Query 047769
Match_columns 131
No_of_seqs 174 out of 438
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1id3_B Histone H4; nucleosome 100.0 1.2E-44 4.2E-49 259.0 9.7 102 30-131 1-102 (102)
2 1tzy_D Histone H4-VI; histone- 100.0 7.7E-43 2.6E-47 249.2 9.6 103 29-131 1-103 (103)
3 2yfw_B Histone H4, H4; cell cy 100.0 8.2E-43 2.8E-47 249.3 8.7 103 29-131 1-103 (103)
4 2hue_C Histone H4; mini beta s 100.0 1.6E-35 5.4E-40 204.6 8.1 84 48-131 1-84 (84)
5 2l5a_A Histone H3-like centrom 99.9 4.7E-29 1.6E-33 200.4 2.0 84 44-131 152-235 (235)
6 2ly8_A Budding yeast chaperone 99.9 6.2E-27 2.1E-31 172.3 6.4 64 68-131 58-121 (121)
7 3b0c_T CENP-T, centromere prot 99.9 5E-23 1.7E-27 148.9 8.6 73 55-127 5-77 (111)
8 1ku5_A HPHA, archaeal histon; 99.8 3.9E-21 1.3E-25 127.8 8.6 65 56-120 5-69 (70)
9 1f1e_A Histone fold protein; a 99.8 4.3E-19 1.5E-23 135.0 9.1 66 57-122 82-147 (154)
10 1taf_B TFIID TBP associated fa 99.8 8.3E-19 2.9E-23 118.1 8.3 65 56-120 5-69 (70)
11 1f1e_A Histone fold protein; a 99.8 1.4E-18 4.8E-23 132.1 9.6 69 57-125 4-73 (154)
12 1b67_A Protein (histone HMFA); 99.7 3.8E-17 1.3E-21 107.5 8.5 66 57-122 2-67 (68)
13 1taf_A TFIID TBP associated fa 99.7 4.7E-16 1.6E-20 104.1 8.6 62 61-122 5-66 (68)
14 1n1j_A NF-YB; histone-like PAI 99.6 1.7E-15 5.7E-20 105.3 9.6 76 52-127 3-80 (93)
15 3b0b_B CENP-S, centromere prot 99.5 6.8E-15 2.3E-19 106.0 6.3 62 62-123 24-88 (107)
16 4dra_A Centromere protein S; D 99.5 7.1E-15 2.4E-19 106.9 5.9 62 62-123 32-96 (113)
17 3v9r_A MHF1, uncharacterized p 99.4 2.7E-13 9.2E-18 95.0 7.4 60 62-122 17-80 (90)
18 3b0c_W CENP-W, centromere prot 99.4 5.2E-13 1.8E-17 89.9 7.6 66 57-122 4-70 (76)
19 3vh5_A CENP-S; histone fold, c 99.4 3.4E-13 1.2E-17 101.2 6.3 62 62-123 24-88 (140)
20 1jfi_B DR1 protein, transcript 99.4 2.2E-12 7.6E-17 100.1 9.5 74 54-127 12-86 (179)
21 2hue_B Histone H3; mini beta s 99.3 1.1E-11 3.7E-16 84.7 9.4 68 57-124 3-75 (77)
22 2f8n_K Histone H2A type 1; nuc 99.3 7E-12 2.4E-16 94.8 8.4 95 23-121 14-109 (149)
23 2byk_B Chrac-14; nucleosome sl 99.3 8.2E-12 2.8E-16 91.9 8.3 71 55-125 7-79 (128)
24 1tzy_A Histone H2A-IV; histone 99.3 1.3E-11 4.5E-16 91.2 8.9 64 57-120 25-89 (129)
25 1id3_C Histone H2A.1; nucleoso 99.3 1.8E-11 6.3E-16 90.6 8.9 64 57-120 25-89 (131)
26 2f8n_G Core histone macro-H2A. 99.2 4.3E-11 1.5E-15 87.4 8.7 64 57-120 22-86 (120)
27 2nqb_C Histone H2A; nucleosome 99.2 5E-11 1.7E-15 87.4 8.7 64 57-120 23-87 (123)
28 1f66_C Histone H2A.Z; nucleoso 99.2 4.6E-11 1.6E-15 88.1 8.4 91 29-121 1-93 (128)
29 3nqj_A Histone H3-like centrom 99.2 5.5E-11 1.9E-15 82.1 8.1 68 57-124 3-77 (82)
30 2yfv_A Histone H3-like centrom 99.1 3.1E-10 1.1E-14 80.8 8.0 66 55-120 25-98 (100)
31 1tzy_C Histone H3; histone-fol 99.1 6.1E-10 2.1E-14 83.1 9.0 68 57-124 62-134 (136)
32 1n1j_B NF-YC; histone-like PAI 99.1 8.5E-10 2.9E-14 77.3 9.1 68 55-122 17-85 (97)
33 3nqu_A Histone H3-like centrom 99.0 8E-10 2.7E-14 82.9 7.8 68 57-124 61-135 (140)
34 3r45_A Histone H3-like centrom 99.0 7.9E-10 2.7E-14 84.2 6.9 67 57-123 77-150 (156)
35 4gqb_C Histone H4 peptide; TIM 98.8 8.1E-10 2.8E-14 60.2 1.3 24 29-52 1-24 (26)
36 4g92_C HAPE; transcription fac 98.8 3E-08 1E-12 71.8 9.4 67 55-121 39-106 (119)
37 1jfi_A Transcription regulator 98.8 7.3E-09 2.5E-13 72.8 5.9 66 56-121 10-76 (98)
38 2jss_A Chimera of histone H2B. 98.6 1.6E-07 5.4E-12 72.8 7.6 64 57-120 105-170 (192)
39 1tzy_B Histone H2B; histone-fo 98.5 5.6E-07 1.9E-11 66.4 8.9 62 60-121 39-101 (126)
40 2nqb_D Histone H2B; nucleosome 98.5 6.8E-07 2.3E-11 65.7 8.9 62 60-121 36-98 (123)
41 2byk_A Chrac-16; nucleosome sl 98.5 2.8E-07 9.5E-12 68.7 6.5 67 55-121 17-85 (140)
42 1h3o_B Transcription initiatio 98.2 1.1E-05 3.8E-10 54.6 9.0 67 56-122 4-71 (76)
43 2jss_A Chimera of histone H2B. 98.0 3E-05 1E-09 60.0 8.6 62 60-121 6-68 (192)
44 2l5a_A Histone H3-like centrom 97.7 4.6E-05 1.6E-09 61.2 6.2 69 57-125 11-87 (235)
45 4dra_E Centromere protein X; D 97.2 0.0029 9.8E-08 43.5 8.8 66 54-119 9-77 (84)
46 3b0b_C CENP-X, centromere prot 96.8 0.012 4.1E-07 40.0 8.8 65 55-119 6-73 (81)
47 1bh9_B TAFII28; histone fold, 96.6 0.014 4.9E-07 40.1 8.1 66 57-122 16-82 (89)
48 1h3o_A Transcription initiatio 95.0 0.03 1E-06 37.7 4.2 42 63-104 12-53 (75)
49 2ly8_A Budding yeast chaperone 94.5 0.087 3E-06 38.2 6.0 51 58-108 2-60 (121)
50 3v9r_B MHF2, uncharacterized p 93.5 0.21 7.2E-06 34.5 6.1 60 58-117 2-71 (88)
51 3uk6_A RUVB-like 2; hexameric 92.9 0.61 2.1E-05 36.5 8.8 66 55-121 256-329 (368)
52 3ksy_A SOS-1, SON of sevenless 91.5 0.58 2E-05 43.5 8.1 65 57-121 104-168 (1049)
53 3k1j_A LON protease, ATP-depen 90.9 0.94 3.2E-05 39.1 8.4 52 71-122 311-375 (604)
54 3kw6_A 26S protease regulatory 90.2 0.5 1.7E-05 30.1 4.7 43 80-122 27-73 (78)
55 2v1u_A Cell division control p 89.6 2 6.9E-05 33.1 8.6 68 55-122 198-276 (387)
56 3bos_A Putative DNA replicatio 89.6 0.86 2.9E-05 32.7 6.1 56 63-120 183-241 (242)
57 2dzn_B 26S protease regulatory 87.9 0.8 2.7E-05 29.5 4.5 32 91-122 37-68 (82)
58 1g8p_A Magnesium-chelatase 38 87.5 1.7 6E-05 33.4 7.0 48 74-121 267-321 (350)
59 2krk_A 26S protease regulatory 86.5 1.2 4E-05 29.4 4.7 32 91-122 50-81 (86)
60 1in4_A RUVB, holliday junction 86.2 2.4 8.2E-05 33.5 7.2 68 56-124 178-252 (334)
61 2chg_A Replication factor C sm 84.9 2.5 8.5E-05 29.4 6.1 63 55-120 158-224 (226)
62 3vlf_B 26S protease regulatory 84.5 1.2 3.9E-05 29.3 3.9 32 91-122 40-71 (88)
63 2qby_A CDC6 homolog 1, cell di 84.3 8.1 0.00028 29.5 9.3 69 54-122 193-272 (386)
64 2qby_B CDC6 homolog 3, cell di 83.7 5.1 0.00017 31.1 8.0 67 54-122 193-270 (384)
65 3aji_B S6C, proteasome (prosom 83.7 1.4 4.8E-05 28.2 4.0 32 91-122 40-71 (83)
66 1fnn_A CDC6P, cell division co 83.5 4.8 0.00016 31.1 7.7 68 55-122 190-274 (389)
67 2r44_A Uncharacterized protein 82.7 6.4 0.00022 30.4 8.2 48 74-121 226-296 (331)
68 1lv7_A FTSH; alpha/beta domain 79.1 2.5 8.6E-05 31.5 4.5 33 90-122 220-252 (257)
69 2c9o_A RUVB-like 1; hexameric 78.9 8.4 0.00029 31.8 8.1 66 55-121 363-436 (456)
70 3fes_A ATP-dependent CLP endop 77.9 9.8 0.00033 26.5 7.1 35 88-122 83-117 (145)
71 1ich_A TNF-1, tumor necrosis f 77.6 2.5 8.5E-05 30.0 3.8 70 52-124 17-87 (112)
72 1jr3_D DNA polymerase III, del 76.7 3.4 0.00012 32.3 4.8 60 63-123 151-210 (343)
73 3fh2_A Probable ATP-dependent 76.5 12 0.00042 25.9 7.3 35 88-122 83-117 (146)
74 3f9v_A Minichromosome maintena 76.2 1.1 3.7E-05 39.0 2.0 49 74-122 521-587 (595)
75 1wwi_A Hypothetical protein TT 75.6 7.2 0.00024 29.1 6.0 58 58-115 3-60 (148)
76 3pfi_A Holliday junction ATP-d 73.9 14 0.00049 28.3 7.7 67 57-124 183-256 (338)
77 2qz4_A Paraplegin; AAA+, SPG7, 71.5 1.6 5.6E-05 32.1 1.7 60 63-122 186-249 (262)
78 3h4m_A Proteasome-activating n 71.2 5.3 0.00018 29.9 4.5 43 80-122 212-258 (285)
79 1njg_A DNA polymerase III subu 69.4 9.7 0.00033 26.4 5.4 60 55-119 182-248 (250)
80 3f8t_A Predicted ATPase involv 69.0 19 0.00066 31.5 8.1 66 57-122 393-483 (506)
81 1ixz_A ATP-dependent metallopr 65.5 5.9 0.0002 29.4 3.7 46 74-119 203-253 (254)
82 1iy2_A ATP-dependent metallopr 65.1 4.6 0.00016 30.6 3.1 46 74-119 227-277 (278)
83 4b4t_I 26S protease regulatory 64.5 7.5 0.00026 33.3 4.6 47 75-121 371-422 (437)
84 3nbx_X ATPase RAVA; AAA+ ATPas 64.2 20 0.00068 30.6 7.2 59 58-116 209-280 (500)
85 1hqc_A RUVB; extended AAA-ATPa 64.1 12 0.00042 28.2 5.4 68 55-123 165-239 (324)
86 3pvs_A Replication-associated 63.3 19 0.00063 30.1 6.7 68 55-122 162-244 (447)
87 4b4t_J 26S protease regulatory 62.8 8.6 0.00029 32.4 4.6 42 80-121 343-388 (405)
88 2l09_A ASR4154 protein; proto- 62.8 7.8 0.00027 24.9 3.4 23 97-119 27-49 (62)
89 2kru_A Light-independent proto 62.4 8.5 0.00029 24.7 3.5 46 76-122 7-53 (63)
90 1r4v_A Hypothetical protein AQ 62.3 9.3 0.00032 29.1 4.3 60 56-115 25-84 (171)
91 1sxj_D Activator 1 41 kDa subu 62.2 5.1 0.00018 30.7 2.9 63 57-120 191-261 (353)
92 2y1q_A CLPC N-domain, negative 61.1 35 0.0012 23.2 6.9 35 88-122 81-115 (150)
93 1w5s_A Origin recognition comp 59.7 33 0.0011 26.6 7.3 69 54-122 211-293 (412)
94 4b4t_L 26S protease subunit RP 59.1 11 0.00036 32.0 4.5 43 80-122 376-422 (437)
95 4b4t_H 26S protease regulatory 57.5 9.3 0.00032 32.9 4.0 42 80-121 404-449 (467)
96 3mse_B Calcium-dependent prote 57.2 44 0.0015 22.9 8.4 68 57-124 1-70 (180)
97 3u02_A Putative transcription- 54.6 18 0.00062 28.8 5.0 53 78-130 67-138 (252)
98 4b4t_K 26S protease regulatory 52.1 15 0.00053 30.9 4.4 43 80-122 368-414 (428)
99 4b4t_M 26S protease regulatory 51.9 12 0.00039 31.7 3.6 43 80-122 376-422 (434)
100 1ofh_A ATP-dependent HSL prote 51.7 45 0.0015 24.7 6.6 68 55-122 199-299 (310)
101 2i5u_A DNAD domain protein; st 51.5 45 0.0015 21.4 6.8 49 63-111 4-61 (83)
102 2a1j_A DNA repair endonuclease 51.2 13 0.00046 22.9 3.0 35 53-87 7-42 (63)
103 2z4s_A Chromosomal replication 48.0 26 0.00089 28.9 5.1 58 63-122 272-332 (440)
104 3cuq_A Vacuolar-sorting protei 47.9 26 0.0009 27.5 4.9 60 62-122 43-127 (234)
105 3keo_A Redox-sensing transcrip 46.4 12 0.00043 28.7 2.7 62 57-121 6-77 (212)
106 1k6k_A ATP-dependent CLP prote 44.5 29 0.00099 23.5 4.2 32 90-121 83-114 (143)
107 3kxe_C Antitoxin protein PARD- 43.9 69 0.0023 21.3 7.3 67 62-130 17-86 (88)
108 2dhr_A FTSH; AAA+ protein, hex 43.2 21 0.00071 30.5 3.9 49 74-122 218-271 (499)
109 2r62_A Cell division protease 42.5 6.8 0.00023 29.1 0.6 33 90-122 221-253 (268)
110 2chq_A Replication factor C sm 42.0 33 0.0011 25.5 4.4 61 57-120 160-224 (319)
111 1z00_B DNA repair endonuclease 40.9 15 0.0005 24.4 2.0 36 53-88 21-57 (84)
112 1iqp_A RFCS; clamp loader, ext 40.5 49 0.0017 24.6 5.2 61 56-119 167-231 (327)
113 2l09_A ASR4154 protein; proto- 40.4 31 0.0011 22.0 3.5 35 53-87 18-52 (62)
114 2ce7_A Cell division protein F 40.3 32 0.0011 29.2 4.5 34 89-122 223-256 (476)
115 3h87_C Putative uncharacterize 40.3 37 0.0013 22.2 3.9 53 54-120 5-57 (73)
116 3oq9_A Tumor necrosis factor r 39.8 37 0.0013 22.6 4.0 66 56-125 8-74 (86)
117 3zri_A CLPB protein, CLPV; cha 38.8 38 0.0013 24.7 4.2 34 88-121 100-134 (171)
118 1khy_A CLPB protein; alpha hel 38.8 32 0.0011 23.3 3.6 33 88-120 84-116 (148)
119 1uxc_A FRUR (1-57), fructose r 38.7 53 0.0018 20.2 4.4 33 57-89 11-44 (65)
120 2kng_A Protein LSR2; DNA-bindi 38.2 49 0.0017 20.7 4.0 27 60-86 15-46 (55)
121 1qzm_A ATP-dependent protease 38.0 27 0.00094 23.7 3.1 54 57-119 32-89 (94)
122 2dt5_A AT-rich DNA-binding pro 37.9 28 0.00095 26.4 3.5 48 57-107 2-58 (211)
123 1jr3_A DNA polymerase III subu 37.8 40 0.0014 25.7 4.5 60 56-120 176-242 (373)
124 1khy_A CLPB protein; alpha hel 37.0 53 0.0018 22.2 4.6 35 89-123 8-42 (148)
125 2o71_A Death domain-containing 36.7 42 0.0014 23.2 4.0 65 61-129 36-103 (115)
126 2of5_A Death domain-containing 36.3 38 0.0013 23.4 3.7 65 61-129 36-103 (114)
127 3vfd_A Spastin; ATPase, microt 36.2 63 0.0021 25.6 5.5 58 64-122 292-365 (389)
128 3qrx_A Centrin; calcium-bindin 35.9 92 0.0031 20.4 7.7 32 94-125 102-133 (169)
129 3fwb_A Cell division control p 35.8 88 0.003 20.2 7.8 33 93-125 96-128 (161)
130 3ezq_A Tumor necrosis factor r 35.8 28 0.00097 24.5 3.0 66 54-123 14-80 (115)
131 1r6b_X CLPA protein; AAA+, N-t 35.2 1.1E+02 0.0039 26.4 7.3 32 90-121 83-114 (758)
132 3d8b_A Fidgetin-like protein 1 35.1 1E+02 0.0035 24.2 6.6 59 63-122 260-334 (357)
133 2bl0_B Myosin regulatory light 34.6 88 0.003 19.8 5.6 33 93-125 76-108 (145)
134 2y1q_A CLPC N-domain, negative 34.5 66 0.0023 21.8 4.8 35 89-123 8-42 (150)
135 1u5t_A Appears to BE functiona 33.9 1.1E+02 0.0036 24.0 6.3 66 62-129 63-147 (233)
136 3pm8_A PFCDPK2, calcium-depend 33.3 1.2E+02 0.0042 21.1 6.3 67 58-124 22-88 (197)
137 3or8_A Transcription elongatio 33.3 16 0.00054 28.1 1.4 56 74-129 75-135 (197)
138 1l8q_A Chromosomal replication 33.3 27 0.00091 26.8 2.7 56 65-121 177-239 (324)
139 3fes_A ATP-dependent CLP endop 33.0 71 0.0024 21.9 4.8 34 90-123 11-44 (145)
140 2kru_A Light-independent proto 32.6 27 0.00094 22.3 2.2 33 54-86 20-52 (63)
141 2xp1_A SPT6; transcription, IW 32.3 13 0.00044 27.9 0.7 55 74-129 71-127 (178)
142 1k6k_A ATP-dependent CLP prote 31.6 55 0.0019 22.0 3.9 31 89-119 4-34 (143)
143 1sxj_B Activator 1 37 kDa subu 31.6 86 0.0029 23.2 5.3 62 56-120 164-229 (323)
144 1sxj_A Activator 1 95 kDa subu 30.4 43 0.0015 28.0 3.7 62 57-121 208-273 (516)
145 3qqa_A CMER; alpha-helical, he 30.4 1.3E+02 0.0043 20.4 6.3 47 56-102 35-86 (216)
146 3fh2_A Probable ATP-dependent 30.3 67 0.0023 22.0 4.2 34 89-122 9-42 (146)
147 3b9p_A CG5977-PA, isoform A; A 29.2 66 0.0023 23.9 4.3 58 64-122 199-272 (297)
148 2vt3_A REX, redox-sensing tran 29.1 25 0.00087 26.7 1.9 47 57-106 7-62 (215)
149 3zri_A CLPB protein, CLPV; cha 28.1 69 0.0024 23.3 4.1 37 86-122 24-60 (171)
150 2ovk_C Myosin catalytic light 28.0 1.1E+02 0.0036 20.0 4.8 33 93-125 85-117 (159)
151 1bh9_A TAFII18; histone fold, 27.0 1E+02 0.0034 18.1 5.7 39 62-100 5-44 (45)
152 2mys_C Myosin; muscle protein, 27.0 1.2E+02 0.0042 19.1 7.6 65 58-125 41-117 (149)
153 4ds7_A Calmodulin, CAM; protei 26.9 1.2E+02 0.0042 19.1 7.8 33 93-125 84-116 (147)
154 2qac_A Myosin A tail domain in 25.9 1.3E+02 0.0046 19.2 6.2 31 95-125 86-116 (146)
155 3f0c_A TETR-molecule A, transc 25.9 1.3E+02 0.0043 20.4 5.0 47 57-103 28-79 (216)
156 1top_A Troponin C; contractIle 24.7 1.4E+02 0.0049 19.1 7.4 66 57-125 52-128 (162)
157 3k21_A PFCDPK3, calcium-depend 24.5 97 0.0033 21.5 4.3 24 102-125 61-84 (191)
158 1baz_A ARC repressor; transcri 24.4 1.2E+02 0.004 18.0 4.1 9 58-66 14-22 (53)
159 3bqz_B HTH-type transcriptiona 24.3 1.6E+02 0.0054 19.5 5.5 46 57-102 19-69 (194)
160 2k9i_A Plasmid PRN1, complete 24.1 1E+02 0.0036 17.3 3.7 27 62-93 23-49 (55)
161 2bjv_A PSP operon transcriptio 23.6 46 0.0016 24.5 2.5 50 63-115 194-250 (265)
162 2ygg_A Sodium/hydrogen exchang 23.3 1.6E+02 0.0055 19.2 4.7 44 74-117 3-46 (70)
163 3geu_A Intercellular adhesion 22.6 1.7E+02 0.006 19.3 5.4 46 57-102 20-70 (189)
164 2bl0_C Myosin regulatory light 22.5 1.5E+02 0.0052 18.7 6.9 33 93-125 79-111 (142)
165 3qkx_A Uncharacterized HTH-typ 22.2 1.6E+02 0.0055 19.3 4.9 19 56-74 24-42 (188)
166 1ny5_A Transcriptional regulat 22.2 80 0.0027 25.3 3.8 60 58-120 320-385 (387)
167 2o3f_A Putative HTH-type trans 22.1 95 0.0033 20.8 3.7 21 57-77 50-70 (111)
168 3ff5_A PEX14P, peroxisomal bio 22.0 98 0.0034 19.1 3.3 14 108-121 40-53 (54)
169 3ezq_B Protein FADD; apoptosis 21.1 2.1E+02 0.0072 19.8 6.0 60 61-124 18-78 (122)
170 3sjs_A URE3-BP sequence specif 21.0 2.3E+02 0.0079 20.2 7.5 64 57-125 83-149 (220)
171 2dg8_A Putative TETR-family tr 21.0 2E+02 0.0067 19.3 5.7 43 57-99 26-73 (193)
172 2l8n_A Transcriptional repress 20.9 95 0.0033 19.1 3.2 30 57-88 20-49 (67)
173 1r6b_X CLPA protein; AAA+, N-t 20.7 2.6E+02 0.0089 24.1 7.0 49 74-122 372-433 (758)
174 3ni7_A Bacterial regulatory pr 20.6 99 0.0034 21.9 3.7 19 56-74 23-41 (213)
175 4dhx_B Enhancer of yellow 2 tr 20.5 1.7E+02 0.0057 19.9 4.7 62 60-123 13-75 (101)
176 2ozu_A Histone acetyltransfera 20.2 1.5E+02 0.005 24.1 4.9 61 65-125 172-241 (284)
No 1
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=1.2e-44 Score=258.99 Aligned_cols=102 Identities=91% Similarity=1.395 Sum_probs=78.3
Q ss_pred cCCCCCCccCCCCCCccccccccccccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 047769 30 SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 109 (131)
Q Consensus 30 ~g~gkggkg~gk~g~kR~rKvlrd~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKT 109 (131)
+|+||||||+|++|+|||||+++|+|++||+++|+|||+++|++|||++||+++++++++|+++|++||++||+||+|||
T Consensus 1 ~~~~~~~~g~~~~g~kr~~k~~r~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKT 80 (102)
T 1id3_B 1 SGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT 80 (102)
T ss_dssp -----------------------CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCCCCCCCCCccchHHHHHHhccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHcCCcccccCC
Q 047769 110 VTAMDVVYALKRQGRTLYGFGG 131 (131)
Q Consensus 110 Vt~~DV~~ALkr~G~~lYGF~~ 131 (131)
||++||++||+++|+|||||++
T Consensus 81 Vt~~DV~~ALkr~g~~lYGf~~ 102 (102)
T 1id3_B 81 VTSLDVVYALKRQGRTLYGFGG 102 (102)
T ss_dssp ECHHHHHHHHHHTTCCEESSCC
T ss_pred CcHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999985
No 2
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=100.00 E-value=7.7e-43 Score=249.24 Aligned_cols=103 Identities=98% Similarity=1.462 Sum_probs=82.3
Q ss_pred ccCCCCCCccCCCCCCccccccccccccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 047769 29 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 108 (131)
Q Consensus 29 m~g~gkggkg~gk~g~kR~rKvlrd~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RK 108 (131)
|||+||||||+|++|+|||+|+++|++++||+++|+|||+++|++|||++||++|++++++|+++|++||++||+|++||
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRk 80 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK 80 (103)
T ss_dssp --------------------CCCCCGGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCccccccchhhhcccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHcCCcccccCC
Q 047769 109 TVTAMDVVYALKRQGRTLYGFGG 131 (131)
Q Consensus 109 TVt~~DV~~ALkr~G~~lYGF~~ 131 (131)
|||++||++||+++|+|||||++
T Consensus 81 tIt~~DV~~Alr~~g~~lYGf~~ 103 (103)
T 1tzy_D 81 TVTAMDVVYALKRQGRTLYGFGG 103 (103)
T ss_dssp EECHHHHHHHHHHTTCEEESCCC
T ss_pred cCCHHHHHHHHHHcCCCCcCCCC
Confidence 99999999999999999999986
No 3
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=100.00 E-value=8.2e-43 Score=249.29 Aligned_cols=103 Identities=92% Similarity=1.403 Sum_probs=65.9
Q ss_pred ccCCCCCCccCCCCCCccccccccccccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 047769 29 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 108 (131)
Q Consensus 29 m~g~gkggkg~gk~g~kR~rKvlrd~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RK 108 (131)
|||+||||||+|++|+|||+|+++|++++||+++|+|||+++|++|||++||++|++++++|+++|++||++||+|++||
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRk 80 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRK 80 (103)
T ss_dssp -----------------------------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHcCCcccccCC
Q 047769 109 TVTAMDVVYALKRQGRTLYGFGG 131 (131)
Q Consensus 109 TVt~~DV~~ALkr~G~~lYGF~~ 131 (131)
|||++||++||+++|+|||||++
T Consensus 81 tvt~~DV~~Alr~~g~~lYGf~~ 103 (103)
T 2yfw_B 81 TVTSLDVVYALKRQGRTLYGFGG 103 (103)
T ss_dssp EECHHHHHHHHHHHC--------
T ss_pred cCcHHHHHHHHHHcCCCCcCCCC
Confidence 99999999999999999999985
No 4
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=100.00 E-value=1.6e-35 Score=204.62 Aligned_cols=84 Identities=96% Similarity=1.396 Sum_probs=81.4
Q ss_pred cccccccccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCccc
Q 047769 48 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 127 (131)
Q Consensus 48 rKvlrd~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~lY 127 (131)
+|+++|++++||+++|+|||+++|++|||+++|+++++++++|+++|++||++||+||+|||||++||++||+++|+|||
T Consensus 1 ~~~~r~~~~~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 1 MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp -CCGGGGCCSSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred CccccccCCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 047769 128 GFGG 131 (131)
Q Consensus 128 GF~~ 131 (131)
||++
T Consensus 81 gf~~ 84 (84)
T 2hue_C 81 GFGG 84 (84)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9985
No 5
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.7e-29 Score=200.42 Aligned_cols=84 Identities=71% Similarity=1.061 Sum_probs=80.2
Q ss_pred CccccccccccccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 44 AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 44 ~kR~rKvlrd~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
.+|++++++|.|. |+ |.||||++||+|||++||++++++++.|+++|++||++||+||+|||||++||++||+++|
T Consensus 152 ~~r~~~vLrD~i~-i~---~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 152 RTKYTSVLRDIID-IS---DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp SSTHHHHHHHHHH-HT---CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhc-cc---HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 4689999999998 54 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCC
Q 047769 124 RTLYGFGG 131 (131)
Q Consensus 124 ~~lYGF~~ 131 (131)
+|||||++
T Consensus 228 r~lYGf~~ 235 (235)
T 2l5a_A 228 RTLYGFGG 235 (235)
T ss_dssp HHHTTCCC
T ss_pred CccccCCC
Confidence 99999986
No 6
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.2e-27 Score=172.26 Aligned_cols=64 Identities=81% Similarity=1.210 Sum_probs=63.0
Q ss_pred HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCcccccCC
Q 047769 68 RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131 (131)
Q Consensus 68 rr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~lYGF~~ 131 (131)
+++|++|||+++|++++++++.|+++|++||++||+||+|||||++||++|||+||+|||||+|
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf~~ 121 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 121 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGCCC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999986
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.88 E-value=5e-23 Score=148.88 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=66.1
Q ss_pred ccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCccc
Q 047769 55 IQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 127 (131)
Q Consensus 55 i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~lY 127 (131)
...||+++|+||++++|++|||+++++++++++++|+++|++||+.||+|||||||+++||++||++||+..|
T Consensus 5 d~~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~ 77 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTD 77 (111)
T ss_dssp -----CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBT
T ss_pred CCCCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccc
Confidence 3479999999999999999999999999999999999999999999999999999999999999999997644
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.85 E-value=3.9e-21 Score=127.80 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=63.3
Q ss_pred cccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 56 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
..||+++|+||+|++|+.|+|++++++|+++++.|+++|++||..||+|||||||+++||.+|++
T Consensus 5 ~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999985
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.78 E-value=4.3e-19 Score=134.96 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 57 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.||+++|.||+|++|++|||+++++++++++++|+++|+++|+.||+|++|||||++||.+||++|
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 699999999999999999999999999999999999999999999999999999999999999986
No 10
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.77 E-value=8.3e-19 Score=118.10 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=63.3
Q ss_pred cccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 56 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
..||.++|+++|++.|+.++|+++..+|.+.+++++.+|+++|++|++|+||||+|++||.+||+
T Consensus 5 s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46999999999999999999999999999999999999999999999999999999999999995
No 11
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.77 E-value=1.4e-18 Score=132.12 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=67.0
Q ss_pred ccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 57 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 57 gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
.||+++|.||+|++ |+.|||.+|+++++++++.|+..|+.+|+.||+|+|||||+++||++||..+|+-
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~ 73 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE 73 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc
Confidence 69999999999999 9999999999999999999999999999999999999999999999999998754
No 12
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.71 E-value=3.8e-17 Score=107.52 Aligned_cols=66 Identities=29% Similarity=0.335 Sum_probs=63.9
Q ss_pred ccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 57 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.||+++|+||++..+..|||.+++..+.++++.|+..|..||..+|+|++||||+++||.+|++.+
T Consensus 2 ~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999999999999764
No 13
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.65 E-value=4.7e-16 Score=104.06 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 61 PAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 61 ~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
..|.+|++.+|++++|+++..+|.++++.|..+|++||..|++|||||||+++||.+|++.+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999999999999999999999999753
No 14
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.63 E-value=1.7e-15 Score=105.35 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=68.0
Q ss_pred cccccccchHHHHHHHHhcCc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCccc
Q 047769 52 RDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 127 (131)
Q Consensus 52 rd~i~gIpk~aIrRLArr~Gv--kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~lY 127 (131)
++....||+++|+||++..+. .+||.++...+.++++.|+..+..+|..+|+|++||||+.+||..||+++|+.-|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~ 80 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY 80 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGG
T ss_pred CcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhh
Confidence 344558999999999999975 8999999999999999999999999999999999999999999999998887644
No 15
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.54 E-value=6.8e-15 Score=106.03 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=59.0
Q ss_pred HHHHHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 62 AIRRLARRGGV---KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 62 aIrRLArr~Gv---kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
+|.||+++.|. .++|+++..+|.+++++|+++|+.||..||+|||||||+++||.+|++++.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~ 88 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCH
Confidence 58899999988 799999999999999999999999999999999999999999999999874
No 16
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.54 E-value=7.1e-15 Score=106.94 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=59.4
Q ss_pred HHHHHHHhcCccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 62 AIRRLARRGGVKR---ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 62 aIrRLArr~GvkR---IS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
+|.||++..|.++ +|+++..+|.+.+++|+++|+.|+..||+|||||||+++||.++++++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~ 96 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSN 96 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCH
Confidence 5889999999988 9999999999999999999999999999999999999999999998864
No 17
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.7e-13 Score=95.02 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=53.2
Q ss_pred HHHHHHHhc----CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 62 AIRRLARRG----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 62 aIrRLArr~----GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+|.+|++.. |+ .+|+++..+|.+.++.|+++|++|+..||+|||||||+++||.++++++
T Consensus 17 ~V~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 345555554 55 4999999999999999999999999999999999999999999999876
No 18
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.42 E-value=5.2e-13 Score=89.92 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 57 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 57 gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.+|+++|.||++.. +-.+||.++.+.+.++++.|++.|..+|...|+|++||||+++||..|++..
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 69999999999954 6689999999999999999999999999999999999999999999999864
No 19
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.40 E-value=3.4e-13 Score=101.20 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=55.6
Q ss_pred HHHHHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 62 AIRRLARRGGVK---RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 62 aIrRLArr~Gvk---RIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
+|.+|++..+.. .||+++..+|.+++++|+++|+.|+..||+|||||||+++||.++++++.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~ 88 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCH
Confidence 466777766544 39999999999999999999999999999999999999999999999864
No 20
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.37 E-value=2.2e-12 Score=100.08 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=69.2
Q ss_pred cccccchHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCccc
Q 047769 54 NIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 127 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr~Gv-kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~lY 127 (131)
....||+++|.||++..+. .+||.|+.+.|.++++.|+..|...|...|+|++||||+++||..||+.+|+.-|
T Consensus 12 eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~f 86 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSY 86 (179)
T ss_dssp CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGG
T ss_pred hhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHH
Confidence 3458999999999999985 8999999999999999999999999999999999999999999999999987644
No 21
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.32 E-value=1.1e-11 Score=84.66 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=64.7
Q ss_pred ccchHHHHHHHHhc-----CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 57 GITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 57 gIpk~aIrRLArr~-----GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
-||+.+..||.|.. |-.|+++++..+|.++.|.|+.++.+|+..+|.||||+||++.||.+|.+-.|.
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 48999999999988 889999999999999999999999999999999999999999999999987775
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.30 E-value=7e-12 Score=94.83 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=65.3
Q ss_pred ccccccccCCCCCCccCCCCCCccccccccccccccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047769 23 QYQRKIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTY 101 (131)
Q Consensus 23 ~~~~~~m~g~gkggkg~gk~g~kR~rKvlrd~i~gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~y 101 (131)
......|+|+|+++ |+...|...+..+..+ .||...|.|+++.+ ++.|||++|...|..+||++..+|++.|..+
T Consensus 14 ~~~~~~~~~~~~~~---~~~~~k~~srS~ragL-qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~ 89 (149)
T 2f8n_K 14 LVPRGSMSGRGKQG---GKARAKAKTRSSRAGL-QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNA 89 (149)
T ss_dssp -----------------------CCCHHHHHTC-SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCC---CCCCCCCCCccccCCe-eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799887642 2222222222223333 58999999999997 8999999999999999999999999999999
Q ss_pred HhhCCCceecHHHHHHHHHH
Q 047769 102 TEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 102 aeHA~RKTVt~~DV~~ALkr 121 (131)
|.+++|++|+++||.+|++.
T Consensus 90 A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 90 ARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHTTCSEECHHHHHHHHHH
T ss_pred HHhcCCCcCcHHHHHHHHhc
Confidence 99999999999999999973
No 23
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.30 E-value=8.2e-12 Score=91.93 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=64.1
Q ss_pred ccccchHHHHHHHHhcC--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 55 IQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 55 i~gIpk~aIrRLArr~G--vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
...||.+.|+||++..+ ..+||.++...+..+++.|+..|...|..+|+|++||||+.+||..||+..++.
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 34799999999999765 789999999999999999999999999999999999999999999999998864
No 24
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.28 E-value=1.3e-11 Score=91.16 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 57 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.+|...|.|+++.+ ++.|||+++...|..+||++..+|++.|..+|.|++|++|+++||.+|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 58999999999997 89999999999999999999999999999999999999999999999996
No 25
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.27 E-value=1.8e-11 Score=90.59 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=62.0
Q ss_pred ccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 57 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.+|...|.|+++.. ++.|||+++...|..+||++..+|++.|..+|.|++|++|+++||.+|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 58999999999996 89999999999999999999999999999999999999999999999997
No 26
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.22 E-value=4.3e-11 Score=87.42 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIrRLArr~G-vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.+|...|.|+++.++ +.|||+++...|..+||++..+|++.|..+|+|++|++|+++||.+|++
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 589999999999998 7999999999999999999999999999999999999999999999997
No 27
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.21 E-value=5e-11 Score=87.38 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 57 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.+|...|.|+++.+ ++.|||+++...|..+||++..+|++.|..+|.|++|++|+++||.+|++
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 58999999999997 89999999999999999999999999999999999999999999999997
No 28
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.21 E-value=4.6e-11 Score=88.14 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=64.9
Q ss_pred ccCCCCCCccCCCCCCccccccccccccccchHHHHHHHHhcC-c-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 047769 29 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGG-V-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 106 (131)
Q Consensus 29 m~g~gkggkg~gk~g~kR~rKvlrd~i~gIpk~aIrRLArr~G-v-kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~ 106 (131)
|+| ||+|++.|+...+...+..+..+ -+|...|.|+++..+ . .|||.++...|..+||++..+|++.|..+|.|.+
T Consensus 1 m~~-~~~~~~~~~~~~~~~srS~ragL-qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k 78 (128)
T 1f66_C 1 MAG-GKAGKDSGKAKTKAVSRSQRAGL-QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 78 (128)
T ss_dssp -----------------CCCHHHHHTC-SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCC-CCCCCCCCCcCCCCcCccccCCc-cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 453 45555444433333223223333 589999999999998 4 4999999999999999999999999999999999
Q ss_pred CceecHHHHHHHHHH
Q 047769 107 RKTVTAMDVVYALKR 121 (131)
Q Consensus 107 RKTVt~~DV~~ALkr 121 (131)
+++|+++||.+|++.
T Consensus 79 ~krItprhi~lAI~n 93 (128)
T 1f66_C 79 VKRITPRHLQLAIRG 93 (128)
T ss_dssp CSEECHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHhc
Confidence 999999999999864
No 29
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.20 E-value=5.5e-11 Score=82.05 Aligned_cols=68 Identities=28% Similarity=0.197 Sum_probs=62.6
Q ss_pred ccchHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 57 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 57 gIpk~aIrRLArr~G-------vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
-||+.|..||.|..+ ..|++++|..+|.++.|.|+-++.+|+..+|.||+|+||.+.||.+|.+-.|.
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence 389999999988766 56999999999999999999999999999999999999999999999987775
No 30
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.09 E-value=3.1e-10 Score=80.76 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred ccccchHHHHHHHHhcC--------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 55 IQGITKPAIRRLARRGG--------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 55 i~gIpk~aIrRLArr~G--------vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.--||+.+..||.|..+ .-|++.+|..+|.++.|.|+-++.+|+..+|.||+|+||++.||.+|.+
T Consensus 25 ~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 25 DLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 33699999999998876 5799999999999999999999999999999999999999999999975
No 31
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.07 E-value=6.1e-10 Score=83.11 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=64.5
Q ss_pred ccchHHHHHHHHhc-----CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 57 GITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 57 gIpk~aIrRLArr~-----GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
-||+.++.||.+.. +.-|++.+|..+|.++.|.|+-++.+|+..+|.||+|+||.+.||.+|.+-.|+
T Consensus 62 LIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 58999999999887 889999999999999999999999999999999999999999999999987764
No 32
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.07 E-value=8.5e-10 Score=77.25 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=62.0
Q ss_pred ccccchHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 55 IQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 55 i~gIpk~aIrRLArr~Gv-kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
...+|.+.|+||++..+- .+||.++...+..++|.|+.+++..|...|++++||||+.+||..|++..
T Consensus 17 ~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 17 VQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp ---CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 346999999999999864 89999999999999999999999999999999999999999999999654
No 33
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.02 E-value=8e-10 Score=82.88 Aligned_cols=68 Identities=28% Similarity=0.197 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 57 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 57 gIpk~aIrRLArr~G-------vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
-||+.++.||.+..+ ..|++.+|..+|.++.|.|+-++.+||..+|.||+|+||+..||.+|.+-.|.
T Consensus 61 LIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 61 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp CSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred ccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 589999999988766 57999999999999999999999999999999999999999999999987774
No 34
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.99 E-value=7.9e-10 Score=84.18 Aligned_cols=67 Identities=28% Similarity=0.211 Sum_probs=62.2
Q ss_pred ccchHHHHHHHHhcC-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 57 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 57 gIpk~aIrRLArr~G-------vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
-|++.++.||.+..+ ..|++.+|..+|.+++|.|+-++.+||..+|.||+|+||+..||.+|.+-.|
T Consensus 77 LIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 77 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp CSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 589999999988766 4699999999999999999999999999999999999999999999997655
No 35
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.83 E-value=8.1e-10 Score=60.15 Aligned_cols=24 Identities=88% Similarity=1.358 Sum_probs=21.6
Q ss_pred ccCCCCCCccCCCCCCcccccccc
Q 047769 29 MSGRGKGGKGLGKGGAKRHRKVLR 52 (131)
Q Consensus 29 m~g~gkggkg~gk~g~kR~rKvlr 52 (131)
.||+|||||||||+|+|||||+..
T Consensus 1 ~sgrgkggkglgkggakrhrkv~~ 24 (26)
T 4gqb_C 1 XSGRGKGGKGLGKGGAKRHRKVXX 24 (26)
T ss_pred CCCCCcCCcccCccchhhhccccc
Confidence 379999999999999999999853
No 36
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.81 E-value=3e-08 Score=71.83 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=62.5
Q ss_pred ccccchHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 55 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 55 i~gIpk~aIrRLArr~-GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
.+.+|.+-|+||++.. .+.+||.++...+..+++.|+..|+..|...|+..+||||+.+||..|++.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 3469999999999864 579999999999999999999999999999999999999999999999964
No 37
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.80 E-value=7.3e-09 Score=72.75 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=58.6
Q ss_pred cccchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 56 QGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 56 ~gIpk~aIrRLArr~G-vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
..+|.+-|+||++..+ +.|||.++.-.+..++|.|+.++++.|..+|++.+||||+..||..|++.
T Consensus 10 ~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 10 ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 3689999999999986 48999999999999999999999999999999999999999999999864
No 38
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.56 E-value=1.6e-07 Score=72.83 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=61.1
Q ss_pred ccchHHHHHHHHhc-Cc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 57 GITKPAIRRLARRG-GV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIrRLArr~-Gv-kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.+|...|.|+++.+ +. .|||+++...|..+||++..+|++.|..+|.|++|++|+++||.+|++
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 58999999999997 65 699999999999999999999999999999999999999999999986
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.51 E-value=5.6e-07 Score=66.38 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 60 KPAIRRLARRGGVK-RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 60 k~aIrRLArr~Gvk-RIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
...|.++++..+.. .||..+...+..+++++|+.|+.+|..++.|++|+|||..||-.|.+.
T Consensus 39 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 39 SIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44799999999876 899999999999999999999999999999999999999999999875
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.49 E-value=6.8e-07 Score=65.68 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred hHHHHHHHHhcCcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 60 KPAIRRLARRGGVK-RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 60 k~aIrRLArr~Gvk-RIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
...|.++++..+.. .||..+...+..+++++|+.|+.+|..++.|++|+|||..||..|.+.
T Consensus 36 ~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 36 AIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 46789999999876 899999999999999999999999999999999999999999999875
No 41
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.47 E-value=2.8e-07 Score=68.72 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=51.9
Q ss_pred ccccchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCceecHHHHHHHHHH
Q 047769 55 IQGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYT-EHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 55 i~gIpk~aIrRLArr~G-vkRIS~~ay~el~~vle~fle~I~~dAv~ya-eHA~RKTVt~~DV~~ALkr 121 (131)
...||.+-|+||++..- +.+||.++...+..+++.|+..++..|..+| +..+||||+..||..|+..
T Consensus 17 ~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~ 85 (140)
T 2byk_A 17 ETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 85 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence 34799999999998764 6899999999999999999999999999999 9999999999999999975
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.21 E-value=1.1e-05 Score=54.65 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 56 QGITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 56 ~gIpk~aIrRLArr~G-vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+-++|..+..|.+... -..+.+++-+.+.++...|+++|+..|...|.|-+-.|+.+-||.+.|+|+
T Consensus 4 ~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 3578999999998864 478999999999999999999999999999999999999999999999986
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.98 E-value=3e-05 Score=59.98 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 60 KPAIRRLARRGGV-KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 60 k~aIrRLArr~Gv-kRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
...|.++++..+. ..||.++.+.+..++.++++.|+.+|...+.+.+|+|+|..||..|.+.
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4568999999876 7799999999999999999999999999999999999999999999874
No 44
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=4.6e-05 Score=61.21 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=58.5
Q ss_pred ccchHHHHHHH----HhcC----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 57 GITKPAIRRLA----RRGG----VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 57 gIpk~aIrRLA----rr~G----vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
-|||.|..||. .... --|+...|..+|.++.|.||-.+.+|+..+|-||+|-||..-|+-+|.+-.|..
T Consensus 11 lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 11 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred cccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 46777755554 4332 369999999999999999999999999999999999999999999998777654
No 45
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.20 E-value=0.0029 Score=43.49 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=57.2
Q ss_pred cccccchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 54 NIQGITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr~G---vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
+-..||+..|.||.+..= -.|||+++...+.+.++.|+.+.+..|+..++-.+-.+|+.+|+...+
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 345799999999998432 269999999999999999999999999999998888899999998765
No 46
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.77 E-value=0.012 Score=40.00 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=57.4
Q ss_pred ccccchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 55 IQGITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 55 i~gIpk~aIrRLArr~G---vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
-..||+..|.+|.+..= -.||+++|...+.+.++.|..+.+..|+.-++-.+-..|+.+|+...+
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 45799999999998742 479999999999999999999999999999988888999999998755
No 47
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.56 E-value=0.014 Score=40.15 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CceecHHHHHHHHHHc
Q 047769 57 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR-RKTVTAMDVVYALKRQ 122 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~-RKTVt~~DV~~ALkr~ 122 (131)
.+|++.|+||+...--..+|+++...+..+.+.|+-+|++.|....+.-+ +.-+....|..|.+++
T Consensus 16 ~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp CCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 68999999999887667899999999999999999999999999998765 5589999999998874
No 48
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=94.99 E-value=0.03 Score=37.71 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=36.3
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEH 104 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeH 104 (131)
|..|+.+.|++-+++|+++-+.-+.++++.++++..+..++|
T Consensus 12 i~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 12 ILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 667889999999999999999999999999999999999988
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.087 Score=38.25 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=41.6
Q ss_pred cchHHHHHHHH----hc----CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 047769 58 ITKPAIRRLAR----RG----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK 108 (131)
Q Consensus 58 Ipk~aIrRLAr----r~----GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RK 108 (131)
|||.|..||.| .. .--|+..++..+|.++.|.||-++.+|+.-+|-||.|-
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 56666555554 32 14699999999999999999999999999999999654
No 50
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.21 Score=34.54 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=44.9
Q ss_pred cchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CceecHHHHHH
Q 047769 58 ITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR-------RKTVTAMDVVY 117 (131)
Q Consensus 58 Ipk~aIrRLArr~G---vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~-------RKTVt~~DV~~ 117 (131)
||++.|.||....- -.||+.++...+.+.++.|+++.+..|..-.+-.. ...++.+|...
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEk 71 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLER 71 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHH
Confidence 78999999997432 38999999999999999999998888765555422 24678888654
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.90 E-value=0.61 Score=36.46 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=53.1
Q ss_pred ccccchHHHHHHHH----hcCccccchHHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 55 IQGITKPAIRRLAR----RGGVKRISGLIYEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 55 i~gIpk~aIrRLAr----r~GvkRIS~~ay~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
+..++...+..+++ ..++ .+++++.+.+..... .++.++++.|..+|...++.+|+.+||..|++.
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44556666666655 3454 499999999988775 478899999999999999999999999999975
No 52
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.51 E-value=0.58 Score=43.54 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=59.1
Q ss_pred ccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
-+|..-|.|+++..-..||+..|.--+..++|+...+|++-|-.+|+..+++.|+..++..|++.
T Consensus 104 ~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 104 SLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred cccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 38888999999444468999999999999999999999999999999999999999999999964
No 53
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.93 E-value=0.94 Score=39.09 Aligned_cols=52 Identities=21% Similarity=0.127 Sum_probs=44.8
Q ss_pred CccccchHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 71 GVKRISGLIYEETRGVL-------------KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 71 GvkRIS~~ay~el~~vl-------------e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
....+++++.+.+.+.. ...+.++++.|..+|...++..|+.+||..|+++.
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 34679999999998755 45678999999999999999999999999999763
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=90.23 E-value=0.5 Score=30.08 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 80 YEETRGVLKIF----LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 80 y~el~~vle~f----le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+++|.+..+-| +++++++|..+|-..++..|+.+|+..||++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 44555444433 77899999999999999999999999999873
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.63 E-value=2 Score=33.10 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=54.0
Q ss_pred ccccchHHHHHHHHhc-----CccccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 55 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLK------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 55 i~gIpk~aIrRLArr~-----GvkRIS~~ay~el~~vle------~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+..++...+..++++. .-..+++++.+.+.+... .++.++++.|..+++..++.+|+.+||..|+...
T Consensus 198 l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 198 FPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp BCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4456667777666542 224689999999988887 6778999999999999899999999999998764
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.59 E-value=0.86 Score=32.70 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=40.9
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vle---~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
+..+++..|+ .+++++.+.+.+... ..+.++++.+..++...++ +||.+||..+|+
T Consensus 183 l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 183 LQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 3344444565 589999998887654 4567788888888866554 699999999884
No 57
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=87.93 E-value=0.8 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 91 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 91 le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+++++++|...|-..++..|+.+|+..|+++.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44566677777777788999999999999875
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.54 E-value=1.7 Score=33.40 Aligned_cols=48 Identities=6% Similarity=-0.091 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 74 RISGLIYEETRGVLK-------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 74 RIS~~ay~el~~vle-------~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
.+|+++.+.+.+... .-+.++++.|..+|...+|.+|+.+||..|+..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 699999999887754 467889999999999999999999999998865
No 59
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=86.48 E-value=1.2 Score=29.43 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 91 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 91 le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
|++++++|...|-...+..|+.+|+..||++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56778888888888889999999999999874
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.17 E-value=2.4 Score=33.48 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=48.1
Q ss_pred cccchHHHH----HHHHhcCccccchHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 56 QGITKPAIR----RLARRGGVKRISGLIYEETRGVL---KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 56 ~gIpk~aIr----RLArr~GvkRIS~~ay~el~~vl---e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
...+...+. ++++..|+. +++++.+.+.+.. -..+.++++.+..||.-.++..||.++|..||.....
T Consensus 178 d~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 178 DFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCC
Confidence 344444444 444445654 8888888887542 2456677888888888888889999999999988653
No 61
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.92 E-value=2.5 Score=29.40 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=40.5
Q ss_pred ccccchHHHHHHHH----hcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 55 IQGITKPAIRRLAR----RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 55 i~gIpk~aIrRLAr----r~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
+..++...+..+++ ..|.. +++++.+.+.....--+..+...+...+..+ ++|+.+||..++.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 34556665555543 34654 8899888888765544444444444444444 6899999999885
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=84.48 E-value=1.2 Score=29.34 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 91 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 91 le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+.+++++|..+|-..++..|+.+|+..|+++.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 67788888888888899999999999999874
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.33 E-value=8.1 Score=29.53 Aligned_cols=69 Identities=7% Similarity=-0.012 Sum_probs=52.1
Q ss_pred cccccchHHHHHHHHh----cC-ccccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 54 NIQGITKPAIRRLARR----GG-VKRISGLIYEETRGVLK------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr----~G-vkRIS~~ay~el~~vle------~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.+..++...+..++++ .+ ...+++++.+.+.+... .++.++++.|...++..++.+|+.+||..|+...
T Consensus 193 ~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 193 IFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp EECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 3446677777776654 22 34688999888887766 3566788999999988899999999999888653
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.70 E-value=5.1 Score=31.07 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=50.8
Q ss_pred cccccchHHHHHHHHhc---Cc--cccchHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 54 NIQGITKPAIRRLARRG---GV--KRISGLIYEETRGVLK------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr~---Gv--kRIS~~ay~el~~vle------~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.+..++...+..|++.. +. ..+++++.+.+.+... .++.++++.|..+|+ +..+|+.+||..++...
T Consensus 193 ~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 193 IFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp EECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 34466777787777653 33 4688999988888765 246688888888887 67789999999998764
No 65
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=83.66 E-value=1.4 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 91 LENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 91 le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+++++++|...|-..++..|+.+|+..|+++.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 55678888888888888999999999999875
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.54 E-value=4.8 Score=31.14 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=52.0
Q ss_pred ccccchHHHHHHHHhc----C-ccccchHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCCCceecHHHHHH
Q 047769 55 IQGITKPAIRRLARRG----G-VKRISGLIYEETRGVL------------KIFLENVIRDAVTYTEHARRKTVTAMDVVY 117 (131)
Q Consensus 55 i~gIpk~aIrRLArr~----G-vkRIS~~ay~el~~vl------------e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ 117 (131)
+..++...+..+++.. + -..+++++.+.+.+.. -.++.++++.|...+...+..+|+.+||..
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 269 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 269 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 3456666666665432 1 1368999999988887 356788999999999998999999999999
Q ss_pred HHHHc
Q 047769 118 ALKRQ 122 (131)
Q Consensus 118 ALkr~ 122 (131)
++...
T Consensus 270 ~~~~~ 274 (389)
T 1fnn_A 270 SSKEV 274 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=82.74 E-value=6.4 Score=30.38 Aligned_cols=48 Identities=17% Similarity=-0.029 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 74 RISGLIYEETRGVLK-----------------------IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 74 RIS~~ay~el~~vle-----------------------~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
.+++++.+.+.+... .-+..+++-|..+|...+|..|+.+||..+++.
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 378888887776542 334567888899999999999999999998875
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.06 E-value=2.5 Score=31.47 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 90 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 90 fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
-++++++.|..+|...++.+|+.+|+..|++..
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 577899999999999999999999999999874
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.87 E-value=8.4 Score=31.76 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.6
Q ss_pred ccccchHHHHHHHHh----cCccccchHHHHHHHHHH-H---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 55 IQGITKPAIRRLARR----GGVKRISGLIYEETRGVL-K---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 55 i~gIpk~aIrRLArr----~GvkRIS~~ay~el~~vl-e---~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
...++...+..++++ .|+. +++++.+.+.... . ....++++.|..+|...++.+|+.+||..|+..
T Consensus 363 ~~~~~~~e~~~iL~~~~~~~~~~-~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 363 TMLYTPQEMKQIIKIRAQTEGIN-ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 345566666665543 3543 8999888887765 2 467778888888999899999999999999875
No 70
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=77.93 E-value=9.8 Score=26.46 Aligned_cols=35 Identities=3% Similarity=0.128 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 88 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 88 e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
..-+.++++.|...|...+...|+++++.+||=..
T Consensus 83 s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~ 117 (145)
T 3fes_A 83 SPRSKQILELSGMFANKLKTNYIGTEHILLAIIQE 117 (145)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhC
Confidence 34567899999999999999999999999998554
No 71
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=77.57 E-value=2.5 Score=30.05 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=55.2
Q ss_pred cccccccchHHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 52 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 52 rd~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vl-e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
-+.+..+|...+++++|+.| +|+.-.+++...- ...-|++.+-.....+-.|++.-+.++++.||++.+.
T Consensus 17 ~~i~d~v~~~~WK~~aRkLG---Lse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l 87 (112)
T 1ich_A 17 YAVVENVPPLRWKEFVKRLG---LSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDL 87 (112)
T ss_dssp HHHHHHSCSTTHHHHHHHHT---CCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHcC---CCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhcc
Confidence 44455678888999999999 6676677766433 3466777778888999999999999999999998764
No 72
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=76.67 E-value=3.4 Score=32.26 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=42.1
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
|++.++..|+. |++++.+.+.+.+.-=+..+..+..+.+-.++..+||.+||...+-...
T Consensus 151 l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 151 VAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhh
Confidence 45777778875 9999999998876655555555555555444556899999988765543
No 73
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=76.53 E-value=12 Score=25.90 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 88 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 88 e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
..-+.++++.|..+|...+...|+.+++.+||=..
T Consensus 83 s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 83 TPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 34567899999999999999999999999998543
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=76.23 E-value=1.1 Score=39.05 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 74 RISGLIYEETRGVLKI------------------FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 74 RIS~~ay~el~~vle~------------------fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.+|+++.+.+.+.... -++.+++-|.++|...+|.+|+.+||..|++-.
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 6777777777655321 377899999999999999999999999998754
No 75
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=75.65 E-value=7.2 Score=29.10 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred cchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHH
Q 047769 58 ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 115 (131)
Q Consensus 58 Ipk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV 115 (131)
++-+-+.++.|.+.-=-|..+=.+.+.++++.-+-+++.-|..-|+..+|..|...|+
T Consensus 3 m~~~~~e~lFR~aa~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 5667888999887555577888999999999999999999999999999999988874
No 76
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=73.89 E-value=14 Score=28.30 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=48.4
Q ss_pred ccchHHHHH----HHHhcCccccchHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 57 GITKPAIRR----LARRGGVKRISGLIYEETRGVL---KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 57 gIpk~aIrR----LArr~GvkRIS~~ay~el~~vl---e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
.++...+.. .++..++ .+++++.+.+.... -..+.++++.+..++...+...|+.+|+..++...+.
T Consensus 183 ~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 344444444 4444453 48889888887742 2467788888989999999999999999999987553
No 77
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.51 E-value=1.6 Score=32.14 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHHhcCccccchHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVL----KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vl----e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
++.+++..+...-.....+.+.... -.-+.++++.|...|...++.+|+.+|+..|+++.
T Consensus 186 l~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 186 FEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3344455565432222334555432 24677888999988888889999999999999863
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.20 E-value=5.3 Score=29.92 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=34.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 80 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 80 y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
++++..... .-++++++.|..+|-..++.+|+.+|+..|++..
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455554433 3678899999999999999999999999999863
No 79
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.43 E-value=9.7 Score=26.45 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHH----hcCccccchHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 55 IQGITKPAIRRLAR----RGGVKRISGLIYEETRGVLKI---FLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 55 i~gIpk~aIrRLAr----r~GvkRIS~~ay~el~~vle~---fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
+..++...+..+++ ..|+ .+++++.+.+.+...- ++.++++.|+.++ +.+||.+||..++
T Consensus 182 l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 44566666665554 3353 5888888888776543 4445555554332 3489999998876
No 80
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=69.02 E-value=19 Score=31.46 Aligned_cols=66 Identities=18% Similarity=0.022 Sum_probs=46.2
Q ss_pred ccchHHHHHH---HH-hcCccccchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhCCCceec
Q 047769 57 GITKPAIRRL---AR-RGGVKRISGLIYEETRGVLK---------------------IFLENVIRDAVTYTEHARRKTVT 111 (131)
Q Consensus 57 gIpk~aIrRL---Ar-r~GvkRIS~~ay~el~~vle---------------------~fle~I~~dAv~yaeHA~RKTVt 111 (131)
.++...++++ || ..---.+|+++.+.+.+... .-++.+++-|.++|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 4666666654 34 12234588887766655422 12456888999999999999999
Q ss_pred HHHHHHHHHHc
Q 047769 112 AMDVVYALKRQ 122 (131)
Q Consensus 112 ~~DV~~ALkr~ 122 (131)
.+||..|++-.
T Consensus 473 ~eDV~~Ai~L~ 483 (506)
T 3f8t_A 473 PEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 81
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.53 E-value=5.9 Score=29.36 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=34.9
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 74 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 74 RIS~~a-y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
.+++++ ++.+..... .-+++++++|..+|...++.+|+.+|+..|+
T Consensus 203 ~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 203 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 355554 555555443 3578899999999999899999999999886
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.07 E-value=4.6 Score=30.58 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=34.2
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 74 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 74 RIS~~a-y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
.+++++ ++.+..... .-++++++.|..+|...++.+|+.+|+..|+
T Consensus 227 ~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 355554 445544333 3577889999999999899999999999886
No 83
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.53 E-value=7.5 Score=33.27 Aligned_cols=47 Identities=23% Similarity=0.150 Sum_probs=37.0
Q ss_pred cchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 75 ISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 75 IS~~a-y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
+++++ ++++....+ .-+++++++|..+|-..+|..|+.+|+..|+++
T Consensus 371 l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 371 LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44443 566655433 458899999999999999999999999999986
No 84
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.24 E-value=20 Score=30.62 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.8
Q ss_pred cchHHHHHHHHhcCccccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhCCCceecHHHHH
Q 047769 58 ITKPAIRRLARRGGVKRISGLIYEETRGVLK-------------IFLENVIRDAVTYTEHARRKTVTAMDVV 116 (131)
Q Consensus 58 Ipk~aIrRLArr~GvkRIS~~ay~el~~vle-------------~fle~I~~dAv~yaeHA~RKTVt~~DV~ 116 (131)
++...+..+....---.+++++.+.+.+... ..+..+++-|.++|...+|..|+.+||.
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred ecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 4555555555444334588888887777663 2456688999999999999999999998
No 85
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=64.06 E-value=12 Score=28.24 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=46.7
Q ss_pred ccccchHHHHHHH----HhcCccccchHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 55 IQGITKPAIRRLA----RRGGVKRISGLIYEETRGVL---KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 55 i~gIpk~aIrRLA----rr~GvkRIS~~ay~el~~vl---e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
+..++...+..++ ...|+ .+++++.+.+.... -..+.++++.+..++...+...|+.+|+..++....
T Consensus 165 l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 3344555555444 44454 48999988887763 345667777777777777788999999998887643
No 86
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=63.27 E-value=19 Score=30.08 Aligned_cols=68 Identities=4% Similarity=0.020 Sum_probs=48.5
Q ss_pred ccccchHHHHHHHHhc----------CccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhC--CCceecHHHHHHHH
Q 047769 55 IQGITKPAIRRLARRG----------GVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHA--RRKTVTAMDVVYAL 119 (131)
Q Consensus 55 i~gIpk~aIrRLArr~----------GvkRIS~~ay~el~~vle---~fle~I~~dAv~yaeHA--~RKTVt~~DV~~AL 119 (131)
+..++...+..++++. -...+++++.+.+..... ..+.++++.++.++... +..+||.+||..++
T Consensus 162 l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 162 LKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIA 241 (447)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHH
Confidence 4566777777666543 113489999998887643 34667777788887644 67899999999998
Q ss_pred HHc
Q 047769 120 KRQ 122 (131)
Q Consensus 120 kr~ 122 (131)
.+.
T Consensus 242 ~~~ 244 (447)
T 3pvs_A 242 GER 244 (447)
T ss_dssp TCC
T ss_pred hhh
Confidence 654
No 87
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.81 E-value=8.6 Score=32.44 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 80 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 80 y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
++++.+..+ .-+++++++|..+|-..+|..|+.+|+..|+++
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 555555433 457899999999998899999999999999986
No 88
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=62.80 E-value=7.8 Score=24.85 Aligned_cols=23 Identities=22% Similarity=0.055 Sum_probs=12.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHH
Q 047769 97 DAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 97 dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
....||+..|...||.+.+..|=
T Consensus 27 ~tE~~Are~G~~~IT~ev~~~AK 49 (62)
T 2l09_A 27 RIEQLARQAEQDIVTPELVEQAR 49 (62)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHHHHHcCCCeEcHHHHHHHH
Confidence 34455566666666665554443
No 89
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=62.45 E-value=8.5 Score=24.74 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 76 SGLIYEETRGVLKIFLE-NVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 76 S~~ay~el~~vle~fle-~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
++++-.+|..+= .|++ .|=+....||+..|...||.+.+..|=...
T Consensus 7 t~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 53 (63)
T 2kru_A 7 TAEAEKMLGKVP-FFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHL 53 (63)
T ss_dssp CHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHh
Confidence 445555555432 2333 333445567777788888877766665443
No 90
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=62.32 E-value=9.3 Score=29.12 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=52.9
Q ss_pred cccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHH
Q 047769 56 QGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 115 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV 115 (131)
.-++-+-+.++.|.+.-=-|..+=.+.+.++++.-+-+++.-|..-|...+|..|...|+
T Consensus 25 ~vmg~~kferlFR~aagLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 25 RPKGFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp SCTTHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred hcCChHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 356888999999987555577888999999999999999999999999999999988874
No 91
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.15 E-value=5.1 Score=30.67 Aligned_cols=63 Identities=10% Similarity=-0.019 Sum_probs=38.4
Q ss_pred ccchHHHHHHH----HhcCccccchHHHHHHHHHHHHH---HHHHHHHHHHHHhhCCC-ceecHHHHHHHHH
Q 047769 57 GITKPAIRRLA----RRGGVKRISGLIYEETRGVLKIF---LENVIRDAVTYTEHARR-KTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIrRLA----rr~GvkRIS~~ay~el~~vle~f---le~I~~dAv~yaeHA~R-KTVt~~DV~~ALk 120 (131)
.++...+..++ +..|+ .+++++.+.+.+...-. +.++++.+..++...+. +.||.+||..++.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 45555554444 33555 38999998888765433 33445555555543332 2899999987765
No 92
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=61.08 E-value=35 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 88 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 88 e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
..-+.++++.|...|...+...|+.+.+.+||=..
T Consensus 81 s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 81 TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhC
Confidence 34567788999999999999999999999998543
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.71 E-value=33 Score=26.55 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=52.9
Q ss_pred cccccchHHHHHHHHh----cCc-cccchHHHHHHHHHHH---------HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 54 NIQGITKPAIRRLARR----GGV-KRISGLIYEETRGVLK---------IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr----~Gv-kRIS~~ay~el~~vle---------~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
.+..++...+..+++. .+. ..+++++.+.+.+... .++.++++.|...+...++.+++.+||..++
T Consensus 211 ~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 211 HLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 3556777777777642 222 2478888888888777 4788999999988988899999999999888
Q ss_pred HHc
Q 047769 120 KRQ 122 (131)
Q Consensus 120 kr~ 122 (131)
...
T Consensus 291 ~~~ 293 (412)
T 1w5s_A 291 SEN 293 (412)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 94
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.09 E-value=11 Score=31.99 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=34.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 80 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 80 y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
++++....+ .-+.+++++|..+|-..++..|+.+|+..|+++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 555554333 4588999999999999999999999999999863
No 95
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.50 E-value=9.3 Score=32.94 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=34.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 80 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 80 y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
++.|....+ .-|++++++|..+|-..+|+.|+.+|+..|+++
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 455555433 357899999999998899999999999999986
No 96
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=57.25 E-value=44 Score=22.94 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=39.6
Q ss_pred ccchHHHHHHHHhcCccccchHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 57 GITKPAIRRLARRGGVKRISGLIYEETRGVLK--IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~~ay~el~~vle--~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
||....+++|-+-....++...+...+...+. .--.+-++++-......+--+|+.+++..+|+..|.
T Consensus 1 ~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~ 70 (180)
T 3mse_B 1 GISPNVLNNMKSYMKHSNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGI 70 (180)
T ss_dssp -CCHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCC
Confidence 34455666666666666666666655555443 222223334444444455567999999999887764
No 97
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=54.63 E-value=18 Score=28.75 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhCCCceecHHHHHHHHHHcCCcccccC
Q 047769 78 LIYEETRGVLKIFLENVI-------------------RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 130 (131)
Q Consensus 78 ~ay~el~~vle~fle~I~-------------------~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~lYGF~ 130 (131)
.-.+++.+.+..|+++.. .....|...|.|.-|+.++...++++.|..+++|.
T Consensus 67 ~~~~~l~~~a~~~v~~~s~~~~~~t~PGi~v~~~~~~~~L~~f~~~A~~~vvt~~~A~~~a~~~gi~~~~~~ 138 (252)
T 3u02_A 67 EKIKEVKTLVIRYVRELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTIEEAEHVARKVNAEVYKFK 138 (252)
T ss_dssp GGHHHHHHHHHHHHHHHHTCC-----CCEEEEESSBCHHHHHHHHHHHHSCCCHHHHHHHHHHTTCEEETCC
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCEEEEEeCCCCHHHHHHHHHHHHcccCHHHHHHHHHHCCcEEEecC
Confidence 445666666666666664 56678999999999999999999999998877764
No 98
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.05 E-value=15 Score=30.87 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 80 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 80 y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
++++....+ .-+++++++|..+|-..+|..|+.+|+..|++.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 555655443 3488999999999999999999999999999874
No 99
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.90 E-value=12 Score=31.75 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 80 YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 80 y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
++++....+ .-+++++++|..+|-..++..|+.+|+..||++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 555655433 4588999999999988899999999999999873
No 100
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.73 E-value=45 Score=24.68 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=42.2
Q ss_pred ccccchHHHHHHHHh---------------cCc-cccchHHHHHHHHHHH-----------HHHHHHHHHHHHH-----H
Q 047769 55 IQGITKPAIRRLARR---------------GGV-KRISGLIYEETRGVLK-----------IFLENVIRDAVTY-----T 102 (131)
Q Consensus 55 i~gIpk~aIrRLArr---------------~Gv-kRIS~~ay~el~~vle-----------~fle~I~~dAv~y-----a 102 (131)
+..++...+..|+++ .+. -.+|+++.+.+.+... ..+.++++.++.. +
T Consensus 199 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~ 278 (310)
T 1ofh_A 199 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS 278 (310)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGG
T ss_pred cCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCc
Confidence 335566667677662 443 2699999999887653 2345555555422 2
Q ss_pred hhCCCc-eecHHHHHHHHHHc
Q 047769 103 EHARRK-TVTAMDVVYALKRQ 122 (131)
Q Consensus 103 eHA~RK-TVt~~DV~~ALkr~ 122 (131)
...+.. +|+.+||..+++..
T Consensus 279 ~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 279 DMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp GCTTCEEEECHHHHHHHTCSS
T ss_pred cccCCEEEEeeHHHHHHHHhh
Confidence 223333 69999999999754
No 101
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=51.53 E-value=45 Score=21.38 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHHH---------HHHHHHHHHHHHhhCCCceec
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVLKIF---------LENVIRDAVTYTEHARRKTVT 111 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vle~f---------le~I~~dAv~yaeHA~RKTVt 111 (131)
+-.+.+..|+..+|+-..+.+..-++.| -.+++..|+.+|-..+.....
T Consensus 4 ~~~~~e~~g~g~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~~~ 61 (83)
T 2i5u_A 4 IRSIWENNGFGLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARNYN 61 (83)
T ss_dssp HHHHHHTTTSCSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCCHH
Confidence 4456677776688998999999888888 899999999999776665553
No 102
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=51.20 E-value=13 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.0
Q ss_pred ccccccchHHHHHHHHhcC-ccccchHHHHHHHHHH
Q 047769 53 DNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVL 87 (131)
Q Consensus 53 d~i~gIpk~aIrRLArr~G-vkRIS~~ay~el~~vl 87 (131)
+.|.||.....++|+++.| ++.|...-.++|.+++
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vi 42 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSIL 42 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHc
Confidence 5788999999999999987 5777777777777763
No 103
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=48.01 E-value=26 Score=28.86 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVLK---IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vle---~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
+++.++..|+. +++++.+.+..... .-++++++.+..+|...++ .||.+++..+|+..
T Consensus 272 L~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 33444444653 88888888876532 3467778888888887775 69999999999764
No 104
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=47.90 E-value=26 Score=27.54 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHhcCccccchH--HHHHHHHHHHHHHHHHHHHHHHHHh--------------------hC---CCceecHHHHH
Q 047769 62 AIRRLARRGGVKRISGL--IYEETRGVLKIFLENVIRDAVTYTE--------------------HA---RRKTVTAMDVV 116 (131)
Q Consensus 62 aIrRLArr~GvkRIS~~--ay~el~~vle~fle~I~~dAv~yae--------------------HA---~RKTVt~~DV~ 116 (131)
-.+++|-+.||..++.. ...++..+ .+|.-+++...+.+|. .+ .+..|+.+||.
T Consensus 43 ~F~~mc~siGVDPlas~kg~ws~~lG~-gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~ 121 (234)
T 3cuq_A 43 QFQDMCATIGVDPLASGKGFWSEMLGV-GDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLI 121 (234)
T ss_dssp HHHHHHHHHTCCTTSCTTSHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHH
T ss_pred HHHHHHHHcCCCcccCCcchhhhhcCc-chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHH
Confidence 45789999999887744 23333332 4554444444444433 11 12589999999
Q ss_pred HHHHHc
Q 047769 117 YALKRQ 122 (131)
Q Consensus 117 ~ALkr~ 122 (131)
.|++.+
T Consensus 122 rAik~L 127 (234)
T 3cuq_A 122 RAIKKL 127 (234)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 105
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=46.41 E-value=12 Score=28.67 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=43.7
Q ss_pred ccchHHHHHHH---------HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-eecHHHHHHHHHH
Q 047769 57 GITKPAIRRLA---------RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK-TVTAMDVVYALKR 121 (131)
Q Consensus 57 gIpk~aIrRLA---------rr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RK-TVt~~DV~~ALkr 121 (131)
.||+++|+||. ...|+++||.. +|.+.+..=-.+|=+|..-|-+..+|. --++++....++.
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~---ela~~~gv~~~qiRkDls~fg~~G~~g~GY~V~~L~~~i~~ 77 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSK---QIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAE 77 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHH---HHHHHHTSCHHHHHHHHHTTGGGTTTSSSEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHH---HHHHHHCCCHHHHHHHHHHHhhcCCCCCCEEHHHHHHHHHH
Confidence 58999999876 45799999965 556666666778888888888876554 3445555555544
No 106
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=44.47 E-value=29 Score=23.46 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 90 FLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 90 fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
-+.++++.|..+|...+...|+++.+..||=.
T Consensus 83 ~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 83 SFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp HHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45678889999999999999999999999944
No 107
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=43.92 E-value=69 Score=21.28 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=43.7
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHHHH--HHHHHHHHHHHHHhhCCCce-ecHHHHHHHHHHcCCcccccC
Q 047769 62 AIRRLARRGGVKRISGLIYEETRGVLKI--FLENVIRDAVTYTEHARRKT-VTAMDVVYALKRQGRTLYGFG 130 (131)
Q Consensus 62 aIrRLArr~GvkRIS~~ay~el~~vle~--fle~I~~dAv~yaeHA~RKT-Vt~~DV~~ALkr~G~~lYGF~ 130 (131)
.|.....+++....|+-+-+.|+..-+. .++ -++.++.-...++.-. ++.++|..-++..-.. .||+
T Consensus 17 ~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~-~Lr~~l~~G~~Sg~~~~~d~d~v~a~~~~~~~~-~~~~ 86 (88)
T 3kxe_C 17 FIDSQVADGRYGSASEVIRAGLRLLEENEAKLA-ALRAALIEGEESGFIEDFDFDAFIEERSRASAP-QGFH 86 (88)
T ss_dssp HHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTCEESSCCHHHHHHHHHHC--------
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHhh-cccc
Confidence 5788888888888887776666654332 233 3677777777777766 8999999999875433 7775
No 108
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=43.22 E-value=21 Score=30.54 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=36.5
Q ss_pred ccchHH-HHHHHHHHH----HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 74 RISGLI-YEETRGVLK----IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 74 RIS~~a-y~el~~vle----~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.+++++ .+.+..... .-|++++.+|..+|...++..|+.+|+..|+++.
T Consensus 218 ~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 218 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp CCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 455554 444443322 4578899999999988888999999999999874
No 109
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=42.46 E-value=6.8 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 90 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 90 fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
-++++++.|..+|...+++.|+.+|+..|+++.
T Consensus 221 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 221 DLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 577889999999988889999999999988753
No 110
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.04 E-value=33 Score=25.48 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=36.4
Q ss_pred ccchHHHH----HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 57 GITKPAIR----RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 57 gIpk~aIr----RLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.++...+. ++++..|+. +++++.+.+.....--+..++......+.. ...|+.+||..++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHC
Confidence 34544444 444556664 899999888876554444444444444433 23689888876653
No 111
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=40.93 E-value=15 Score=24.39 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.5
Q ss_pred ccccccchHHHHHHHHhcC-ccccchHHHHHHHHHHH
Q 047769 53 DNIQGITKPAIRRLARRGG-VKRISGLIYEETRGVLK 88 (131)
Q Consensus 53 d~i~gIpk~aIrRLArr~G-vkRIS~~ay~el~~vle 88 (131)
+.|.||.....++|+++.| ++.|...-.++|.+++-
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig 57 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 57 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC
Confidence 5688899999999998887 57777777777776633
No 112
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=40.52 E-value=49 Score=24.60 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=36.0
Q ss_pred cccchHHHHHHH----HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 56 QGITKPAIRRLA----RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 56 ~gIpk~aIrRLA----rr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
..++...+..++ +..|+. +++++.+.+.....--+..++......+..+ ..||.+||..++
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVA 231 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 345566555544 445654 8999998888766544444443333333333 368888887654
No 113
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=40.44 E-value=31 Score=21.95 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=27.9
Q ss_pred ccccccchHHHHHHHHhcCccccchHHHHHHHHHH
Q 047769 53 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL 87 (131)
Q Consensus 53 d~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vl 87 (131)
-+.++--+..+.++|+..|+..|+-+++.+..+.+
T Consensus 18 ~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 18 FFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp GGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 34555567778899999999999999988877644
No 114
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=40.33 E-value=32 Score=29.22 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 89 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 89 ~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
.-+++++.+|..+|...++..|+.+|+..|+.+.
T Consensus 223 adL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 223 ADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 3477889999999998899999999999999874
No 115
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=40.28 E-value=37 Score=22.24 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=29.6
Q ss_pred cccccchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 54 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
.|+.+|...+++|-.++-..-.| ++.|+..++..++.. .+. ++|+.|+....+
T Consensus 5 ~IRnvpdev~~~L~~rAa~~G~S----------~~~ylr~~Le~~a~~---~~~-~~~~~~l~r~~~ 57 (73)
T 3h87_C 5 LIRDIPDDVLASLDAIAARLGLS----------RTEYIRRRLAQDAQT---ARV-TVTAADLRRLRG 57 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTCC----------HHHHHHHHHHHHHTS---CCC-CCCHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhcC---Ccc-cccHHHHHHHHH
Confidence 45667777655544333222244 456667766554433 333 788888776554
No 116
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=39.83 E-value=37 Score=22.58 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=44.4
Q ss_pred cccchHHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 56 QGITKPAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkRIS~~ay~el~~vl-e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
.-+|-..+++++|+.| +|+.-.+++...- ..-.|++.+-.....+--| ++-+.++.+.+|+..+..
T Consensus 8 ~~~~~~~wK~~~R~LG---lse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g-~~a~~~~Li~~Lr~~~l~ 74 (86)
T 3oq9_A 8 EDMTIQEAKKFARENN---IKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHG-KSDAYQDLIKGLKKAECR 74 (86)
T ss_dssp HHSCHHHHHHHHHTTT---SCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSC-SSSHHHHHHHHHHHTTCS
T ss_pred HHcCHHHHHHHHHHcC---CCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHccch
Confidence 3567888999999999 5555555554321 2223666666666666554 445889999999987753
No 117
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=38.80 E-value=38 Score=24.70 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHh-hCCCceecHHHHHHHHHH
Q 047769 88 KIFLENVIRDAVTYTE-HARRKTVTAMDVVYALKR 121 (131)
Q Consensus 88 e~fle~I~~dAv~yae-HA~RKTVt~~DV~~ALkr 121 (131)
..-+.+++++|...|. ..|...|+++.+.+||=+
T Consensus 100 S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 100 SPLLVELLQEAWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 3456789999999999 999999999999999843
No 118
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=38.77 E-value=32 Score=23.34 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 88 KIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 88 e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
..-+.++++.|...|...+...|+.+.+.+||=
T Consensus 84 s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 84 SQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 445777888899999998999999999999985
No 119
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=38.67 E-value=53 Score=20.21 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=20.6
Q ss_pred ccchHHHHHHHHhcC-ccccchHHHHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGG-VKRISGLIYEETRGVLKI 89 (131)
Q Consensus 57 gIpk~aIrRLArr~G-vkRIS~~ay~el~~vle~ 89 (131)
|++.++|-+++..-. -.+||++..+.+.+++++
T Consensus 11 GVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~ 44 (65)
T 1uxc_A 11 GVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE 44 (65)
T ss_dssp TSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 677888888876322 016777766666655443
No 120
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=38.20 E-value=49 Score=20.71 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=22.3
Q ss_pred hHHHHHHHHhcCc-----cccchHHHHHHHHH
Q 047769 60 KPAIRRLARRGGV-----KRISGLIYEETRGV 86 (131)
Q Consensus 60 k~aIrRLArr~Gv-----kRIS~~ay~el~~v 86 (131)
..+||..|+..|. -||+.+++++....
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp~~V~eAY~aA 46 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIPADVIDAYHAA 46 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHc
Confidence 5689999999996 58999998877654
No 121
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=38.00 E-value=27 Score=23.65 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=29.7
Q ss_pred ccchHHHHHHH----HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 57 GITKPAIRRLA----RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 57 gIpk~aIrRLA----rr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
.|+..+|..|. |-+||..+...+..-.+.++...+++ +....-+||.+|+.--|
T Consensus 32 ~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~a~~i~~~---------~~~~~v~v~~~~l~~~L 89 (94)
T 1qzm_A 32 TVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLD---------KSLKHIEINGDNLHDYL 89 (94)
T ss_dssp EECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTC---------TTCCCEEECTTTTHHHH
T ss_pred eECHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHc---------CCCCCeeECHHHHHHHc
Confidence 46667766655 44666555544444444433333210 23345689999887665
No 122
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=37.85 E-value=28 Score=26.36 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=33.0
Q ss_pred ccchHHHHHHH---------HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 047769 57 GITKPAIRRLA---------RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARR 107 (131)
Q Consensus 57 gIpk~aIrRLA---------rr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~R 107 (131)
.||+++|+||. ...|+++||.. +|.+.+..=-.+|=+|..-|-...++
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~---~l~~~~~~~~~~iRkdls~~g~~G~~ 58 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSE---QLGGLAQVTAFQVRKDLSYFGSYGTR 58 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHH---HHHHHHTSCHHHHHHHHHHTTCCCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHH---HHHHHhCCCHHHeechHHHHHHhcCC
Confidence 37999999886 45799999965 45555555556666677766555443
No 123
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=37.81 E-value=40 Score=25.75 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=36.4
Q ss_pred cccchHHHHHHH----HhcCccccchHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 56 QGITKPAIRRLA----RRGGVKRISGLIYEETRGVLKI---FLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 56 ~gIpk~aIrRLA----rr~GvkRIS~~ay~el~~vle~---fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
..++...+..++ +..|+ .+++++.+.+.+...- .+.++++.+..|+ ..+|+.+||..++.
T Consensus 176 ~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 176 KALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG----DGQVSTQAVSAMLG 242 (373)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHhC
Confidence 345555555544 44565 4888888887765432 3444455555443 35699998876653
No 124
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=37.00 E-value=53 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 89 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 89 ~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
..+.+++..|...|...+...|+++.+.+||=.+.
T Consensus 8 ~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 8 NKFQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 34567788899999999999999999999985543
No 125
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=36.69 E-value=42 Score=23.25 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC--Cccccc
Q 047769 61 PAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG--RTLYGF 129 (131)
Q Consensus 61 ~aIrRLArr~GvkRIS~~ay~el~~vl-e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G--~~lYGF 129 (131)
...+.|||..| +|+.-.+.+...- ...-+++.+-...+.+-.|+ .-|.+-++.||+..| ..+|.|
T Consensus 36 ~~Wk~LAR~LG---lse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~-~AT~~~L~~AL~~~~l~~~v~~~ 103 (115)
T 2o71_A 36 PEWEPMVLSLG---LSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK-QATFQSLHNGLRAVEVDPSLLLH 103 (115)
T ss_dssp TTHHHHHHHTT---CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHTTCCTHHHHH
T ss_pred hhHHHHHHHcC---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHcCCCHHHHHH
Confidence 45777888877 4555555554321 22334444445566665554 468999999999977 455554
No 126
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=36.27 E-value=38 Score=23.40 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC--Cccccc
Q 047769 61 PAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG--RTLYGF 129 (131)
Q Consensus 61 ~aIrRLArr~GvkRIS~~ay~el~~vl-e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G--~~lYGF 129 (131)
...+.|||..| +|+.-.+.+...- ...-+++.+-...+.+-.|+ .-|.+.++.||+..| ..+|.|
T Consensus 36 ~~Wk~LAR~LG---lse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~-~AT~~~L~~AL~~~~l~~~v~~~ 103 (114)
T 2of5_A 36 PEWEPMVLSLG---LSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK-QATFQSLHNGLRAVEVDPSLLLH 103 (114)
T ss_dssp STHHHHHHTTT---CCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHHHTTCCTHHHHH
T ss_pred hhHHHHHHHcC---CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHcCCCHHHHHH
Confidence 45777888877 5555555544321 22234444444556665554 468999999999977 455654
No 127
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=36.25 E-value=63 Score=25.61 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHHhcCccccchHHHHHHHHHHHH----HHHHHHHHHHHHHhhC------------CCceecHHHHHHHHHHc
Q 047769 64 RRLARRGGVKRISGLIYEETRGVLKI----FLENVIRDAVTYTEHA------------RRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 64 rRLArr~GvkRIS~~ay~el~~vle~----fle~I~~dAv~yaeHA------------~RKTVt~~DV~~ALkr~ 122 (131)
+.+++..+. .++++.++.+.....- -+..++++|...+... ....|+.+|+..+|+..
T Consensus 292 ~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 292 KNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 344444443 3788888877766544 4455566665554433 45689999999999864
No 128
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=35.93 E-value=92 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 94 VIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 94 I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
-+..+-......+--.|+.+++..+|+..|.+
T Consensus 102 ~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 133 (169)
T 3qrx_A 102 EILKAFRLFDDDNSGTITIKDLRRVAKELGEN 133 (169)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 34444555555666689999999999988754
No 129
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=35.82 E-value=88 Score=20.21 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 93 NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 93 ~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
+-++.+-......+--.|+.+++..+|+..|.+
T Consensus 96 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 128 (161)
T 3fwb_A 96 DEIKRAFQLFDDDHTGKISIKNLRRVAKELGET 128 (161)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCC
Confidence 344555555555666789999999999988754
No 130
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=35.81 E-value=28 Score=24.55 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=44.0
Q ss_pred cccccchHHHHHHHHhcCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 54 NIQGITKPAIRRLARRGGVKRISGLIYEETRGV-LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~v-le~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
....+|-..++++||+.| +|+.-.+++... -..-.|++.+-.....+-.|+ +-+..+.+.+|+..+
T Consensus 14 Iae~m~~~~wK~laR~LG---lse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G~-~aa~~~Li~aLr~~~ 80 (115)
T 3ezq_A 14 IAGVMTLSQVKGFVRKNG---VNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGK-KEAYDTLIKDLKKAN 80 (115)
T ss_dssp HHHTSCHHHHHHHHHHTT---CCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcC---CCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHcc
Confidence 344678899999999999 555556655533 233346666667777766553 347778888887754
No 131
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.17 E-value=1.1e+02 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 90 FLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 90 fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
-+.++++.|...|...+...|+.+++..||=+
T Consensus 83 ~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 83 SFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhc
Confidence 46778899999999999999999999999854
No 132
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=35.13 E-value=1e+02 Score=24.17 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=35.9
Q ss_pred HHHHHHhcCccccchHHHHHHHHHHHH----HHHHHHHHHHHHHhh------------CCCceecHHHHHHHHHHc
Q 047769 63 IRRLARRGGVKRISGLIYEETRGVLKI----FLENVIRDAVTYTEH------------ARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 63 IrRLArr~GvkRIS~~ay~el~~vle~----fle~I~~dAv~yaeH------------A~RKTVt~~DV~~ALkr~ 122 (131)
++.+++..+.. ++++.++.+.....- -+..+++.|...+-. +....|+.+|+..||+..
T Consensus 260 l~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 260 VINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 34455555543 777777777765443 455555555444332 344689999999999874
No 133
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=34.64 E-value=88 Score=19.82 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 93 NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 93 ~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
+.++.+-......+--.|+.+++..+|+..|.+
T Consensus 76 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 108 (145)
T 2bl0_B 76 KEMLDAFRALDKEGNGTIQEAELRQLLLNLGDA 108 (145)
T ss_dssp HHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCC
Confidence 345555555556666789999999999887754
No 134
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=34.48 E-value=66 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 89 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 89 ~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
..+.+++..|...|...+...|+.+.+.+||=.+.
T Consensus 8 ~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 8 ERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 34567778899999999999999999999985543
No 135
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=33.93 E-value=1.1e+02 Score=24.01 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=39.4
Q ss_pred HHHHHHHhcCccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------CCCceecHHHHHHHHHHc
Q 047769 62 AIRRLARRGGVKRIS-GLIYEETRGVLKIFLENVIRDAVTYTEH------------------ARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 62 aIrRLArr~GvkRIS-~~ay~el~~vle~fle~I~~dAv~yaeH------------------A~RKTVt~~DV~~ALkr~ 122 (131)
-..++|-+.||..++ ..--.++.. +.+|.-+++...+.+|.. .++-.|+.+||..|++.+
T Consensus 63 ~F~~mc~siGVDPLa~s~kg~~~lg-~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L 141 (233)
T 1u5t_A 63 KFMHMCSSIGIDPLSLFDRDKHLFT-VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDML 141 (233)
T ss_dssp HHHHHHHHHTCCHHHHTTSSGGGTT-HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccCCccccccC-cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHh
Confidence 457899999998766 110011112 245555555555544432 222489999999999987
Q ss_pred CCccccc
Q 047769 123 GRTLYGF 129 (131)
Q Consensus 123 G~~lYGF 129 (131)
. +|-||
T Consensus 142 ~-~L~gf 147 (233)
T 1u5t_A 142 K-SLECF 147 (233)
T ss_dssp T-TTCCC
T ss_pred h-hccCe
Confidence 4 33566
No 136
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=33.30 E-value=1.2e+02 Score=21.12 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=35.2
Q ss_pred cchHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 58 ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 58 Ipk~aIrRLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
|....+.+|-+-....++...+...+...+..--.+-++++-....-.+--+|+.+++..+|+..|.
T Consensus 22 l~~~~~~~l~~f~~~~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~ 88 (197)
T 3pm8_A 22 LSSTLLKNLKNFKKENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGY 88 (197)
T ss_dssp CCTTHHHHHHHTTTSCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHccHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3444555555444444444444444443332222222333334444556668999999999988764
No 137
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=33.29 E-value=16 Score=28.07 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc-----CCccccc
Q 047769 74 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ-----GRTLYGF 129 (131)
Q Consensus 74 RIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~-----G~~lYGF 129 (131)
.|..+-|+.|-+++..|++.++..+.....|.+=+.-+.+||...|+.. ++..|+|
T Consensus 75 ~i~~~~y~DLDElI~~~V~pm~~~v~el~~h~kf~~g~~~eve~~L~~ek~~nP~~i~Y~f 135 (197)
T 3or8_A 75 VVEGQRYHDLDQIIVEYLQNKIRLLNELTSNEKFKAGTKKEVVKFIEDYSKVNPKKSVYYF 135 (197)
T ss_dssp EETTEEESSHHHHHHHTHHHHHHHHHHHHTSTTEECSCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EECCeEECCHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 4666789999999999999999999999999888888888999888542 2444776
No 138
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=33.26 E-value=27 Score=26.75 Aligned_cols=56 Identities=11% Similarity=-0.036 Sum_probs=31.7
Q ss_pred HHHHhcCccccchHHHHHHHHHH--HHHHHHHHHHHHHHHh----hCCCcee-cHHHHHHHHHH
Q 047769 65 RLARRGGVKRISGLIYEETRGVL--KIFLENVIRDAVTYTE----HARRKTV-TAMDVVYALKR 121 (131)
Q Consensus 65 RLArr~GvkRIS~~ay~el~~vl--e~fle~I~~dAv~yae----HA~RKTV-t~~DV~~ALkr 121 (131)
+.++..|+ .+++++.+.+.... -.-+++++..+..+.+ ..+.+.| |.+||..++..
T Consensus 177 ~~~~~~~~-~l~~~~l~~l~~~~g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 177 EKLKEFNL-ELRKEVIDYLLENTKNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHTTC-CCCHHHHHHHHHHCSSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCCHHHHHHHHHhCCCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 34444455 58888887776654 0123344444444400 1334678 99999888864
No 139
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=32.98 E-value=71 Score=21.88 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 90 FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 90 fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
...+++..|...|...+...|+++.+.+||=.+.
T Consensus 11 ~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 11 RAKKAIDLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 4556777789999999999999999999986543
No 140
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=32.57 E-value=27 Score=22.30 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=26.4
Q ss_pred cccccchHHHHHHHHhcCccccchHHHHHHHHH
Q 047769 54 NIQGITKPAIRRLARRGGVKRISGLIYEETRGV 86 (131)
Q Consensus 54 ~i~gIpk~aIrRLArr~GvkRIS~~ay~el~~v 86 (131)
++++--+..+.++|+..|+..|+-+++.+..+.
T Consensus 20 FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~ 52 (63)
T 2kru_A 20 FVRKKVRKNTDNYAREIGEPVVTADVFRKAKEH 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHH
Confidence 344555677889999999999999998887664
No 141
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=32.27 E-value=13 Score=27.92 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC--Cccccc
Q 047769 74 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG--RTLYGF 129 (131)
Q Consensus 74 RIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G--~~lYGF 129 (131)
.|..+-|+.|.+++..|++.+.+.+-....|.+=+. +.++|...|+..+ ...|.|
T Consensus 71 ~ig~~~fedLDElI~~yv~pm~~~~~~~~~h~kf~~-s~~~~e~~L~~~~p~~~~Y~f 127 (178)
T 2xp1_A 71 TCSNKHFEDIDEVISVYVRPILRNLKSIKAHAKYFN-SPEDAEKLLSSFDGSKVVYAF 127 (178)
T ss_dssp EETTEEESSHHHHHHHTHHHHHHHHHHHHHSTTBCS-CTTTSHHHHHTCCSSSCEEEE
T ss_pred EECCcEECCHHHHHHHHHHHHHHHHHHHHhCCccCC-CHHHHHHHHHHhCCCCceEEE
Confidence 466667889999999999999999998999987555 7888999997762 334766
No 142
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=31.59 E-value=55 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhCCCceecHHHHHHHH
Q 047769 89 IFLENVIRDAVTYTEHARRKTVTAMDVVYAL 119 (131)
Q Consensus 89 ~fle~I~~dAv~yaeHA~RKTVt~~DV~~AL 119 (131)
..+.+++..|...|...+...|+.+.+.+||
T Consensus 4 ~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 4 QELELSLNMAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 3456778888888888888999999988887
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.56 E-value=86 Score=23.17 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=36.2
Q ss_pred cccchHHHHHHHH----hcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 56 QGITKPAIRRLAR----RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 56 ~gIpk~aIrRLAr----r~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
..++...+..+++ ..|+. +++++.+.+.+...-.+..++......+... ..|+.+||..++.
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 3455665555554 45654 8888888887765543433333332222222 4699999987774
No 144
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.43 E-value=43 Score=28.00 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=38.6
Q ss_pred ccchHHHH----HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHH
Q 047769 57 GITKPAIR----RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 121 (131)
Q Consensus 57 gIpk~aIr----RLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr 121 (131)
.++...+. +++...|+. +++++.+.+.+...--+++++..+...+. +.++|+.+||..++..
T Consensus 208 ~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 208 RPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 34544444 445555655 89999888887654434444444433333 4568999999888763
No 145
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=30.37 E-value=1.3e+02 Score=20.37 Aligned_cols=47 Identities=9% Similarity=-0.032 Sum_probs=30.2
Q ss_pred cccchHHHHHHHHhcCcccc-----chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047769 56 QGITKPAIRRLARRGGVKRI-----SGLIYEETRGVLKIFLENVIRDAVTYT 102 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkRI-----S~~ay~el~~vle~fle~I~~dAv~ya 102 (131)
+|+...+|+.||+++|+.+= -++=-+-+..+++.+++++........
T Consensus 35 ~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~ 86 (216)
T 3qqa_A 35 KGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKT 86 (216)
T ss_dssp TCTTTCCHHHHHHHHTTSCCSSSCSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHhCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788889999999997432 123334455666666666665555444
No 146
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=30.26 E-value=67 Score=21.98 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 89 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 89 ~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
..+.+++..|...|...+-..|+++.+.+||=.+
T Consensus 9 ~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 9 DRARRVIVLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 3456677778888999999999999999988654
No 147
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=29.22 E-value=66 Score=23.94 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHhcCccccchHHHHHHHHHHHH----HHHHHHHHHHHHHhhC------------CCceecHHHHHHHHHHc
Q 047769 64 RRLARRGGVKRISGLIYEETRGVLKI----FLENVIRDAVTYTEHA------------RRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 64 rRLArr~GvkRIS~~ay~el~~vle~----fle~I~~dAv~yaeHA------------~RKTVt~~DV~~ALkr~ 122 (131)
+++++..+. .++++.++.+.....- -+..++++|...+-.. ....|+.+|+..|++..
T Consensus 199 ~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 199 NRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 344444443 3677777777765443 4456666665555433 23579999999998764
No 148
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=29.07 E-value=25 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=27.2
Q ss_pred ccchHHHHHHH---------HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 047769 57 GITKPAIRRLA---------RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 106 (131)
Q Consensus 57 gIpk~aIrRLA---------rr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~ 106 (131)
.||+++|+||. ...|+++||..-. .+.+..=-.+|=+|..-|-+..+
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l---~~~~~~~~~~iRkdls~fg~~G~ 62 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAEL---SDAVKVDSATIRRDFSYFGALGK 62 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHH---HHHHCCCHHHHHHHHHHTTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHH---HHHhCCCHHHeechHHHHHHhcC
Confidence 58999999886 4579999997644 44444444555556665544433
No 149
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=28.11 E-value=69 Score=23.25 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHc
Q 047769 86 VLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 86 vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~ 122 (131)
-+.....+++..|...|...+-..|+.+.+.+||=++
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHc
Confidence 3455677788889999999999999999999998554
No 150
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=28.01 E-value=1.1e+02 Score=20.04 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 93 NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 93 ~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
+-++.+-......+--.|+.+++..+|+..|.+
T Consensus 85 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 117 (159)
T 2ovk_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 345556555556677789999999999988754
No 151
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=27.01 E-value=1e+02 Score=18.09 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=30.8
Q ss_pred HHHHHHHhcC-ccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 047769 62 AIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVT 100 (131)
Q Consensus 62 aIrRLArr~G-vkRIS~~ay~el~~vle~fle~I~~dAv~ 100 (131)
.|+.++--.| ...-.++....+.+++.+|+.+++..|..
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667776666 46677788888999999999999988864
No 152
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=26.96 E-value=1.2e+02 Score=19.11 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=36.9
Q ss_pred cchHHHHHHHHhc---Cc--cccchHHHHHHHHHHHHH-------HHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 58 ITKPAIRRLARRG---GV--KRISGLIYEETRGVLKIF-------LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 58 Ipk~aIrRLArr~---Gv--kRIS~~ay~el~~vle~f-------le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
++...+..+.+.. .. ..|+ ++++...+... -.+.++.+-......+.-.|+.+++..+|+..|.+
T Consensus 41 ~~~~~~~~l~~~~~~~d~~~g~i~---~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 117 (149)
T 2mys_C 41 PTNAEINKILGNPSKEEMNAAAIT---FEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEK 117 (149)
T ss_pred CCHHHHHHHHHHhhhccccCCcCc---HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCC
Confidence 4455566665544 22 2333 44444444333 12344555555555666689999999999887754
No 153
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=26.94 E-value=1.2e+02 Score=19.08 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 93 NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 93 ~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
+-+..+-......+.-.|+.+++..+|+..|.+
T Consensus 84 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 116 (147)
T 4ds7_A 84 QELLEAFKVFDKNGDGLISAAELKHVLTSIGEK 116 (147)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCC
Confidence 344555555555667789999999999988754
No 154
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=25.89 E-value=1.3e+02 Score=19.18 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=21.3
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 95 IRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 95 ~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
++.+-....-.+--.|+.+++..+|+..|.+
T Consensus 86 l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 116 (146)
T 2qac_A 86 LIKMFAHFDNNCTGYLTKSQMKNILTTWGDA 116 (146)
T ss_dssp HHHHHHTTCTTCSSEEEHHHHHHHHHHSSSC
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHhCCC
Confidence 3444444444556679999999999887754
No 155
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.88 E-value=1.3e+02 Score=20.45 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=28.2
Q ss_pred ccchHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047769 57 GITKPAIRRLARRGGVKRIS-----GLIYEETRGVLKIFLENVIRDAVTYTE 103 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS-----~~ay~el~~vle~fle~I~~dAv~yae 103 (131)
|+...+|+.||+++|+.+=+ ++=-+-+..+++.+++++.........
T Consensus 28 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 79 (216)
T 3f0c_A 28 GLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILN 79 (216)
T ss_dssp CSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777899999999985422 111233445566666666555544443
No 156
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=24.70 E-value=1.4e+02 Score=19.14 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=40.1
Q ss_pred ccchHHHHHHHHhcCc---cccchHHHHHHHHHHHHH--------HHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 57 GITKPAIRRLARRGGV---KRISGLIYEETRGVLKIF--------LENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 57 gIpk~aIrRLArr~Gv---kRIS~~ay~el~~vle~f--------le~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
.++...+..+.+.... ..|+ ++++...+... ..+.++.+-......+--.|+.+++..+|+..|.+
T Consensus 52 ~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~ 128 (162)
T 1top_A 52 NPTKEELDAIIEEVDEDGSGTID---FEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEH 128 (162)
T ss_dssp CCCHHHHHHHHHHHCTTSCCEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCCcEe---HHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3456667777665432 3455 44444444333 34445556666656666679999999999887643
No 157
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=24.46 E-value=97 Score=21.51 Aligned_cols=24 Identities=13% Similarity=0.226 Sum_probs=18.0
Q ss_pred HhhCCCceecHHHHHHHHHHcCCc
Q 047769 102 TEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 102 aeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
..-.+--+|+.+++..+|+..|.+
T Consensus 61 ~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 61 LDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HCCCCCCCCcHHHHHHHHHHcCCC
Confidence 344556679999999999887754
No 158
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=24.39 E-value=1.2e+02 Score=17.96 Aligned_cols=9 Identities=0% Similarity=0.102 Sum_probs=4.0
Q ss_pred cchHHHHHH
Q 047769 58 ITKPAIRRL 66 (131)
Q Consensus 58 Ipk~aIrRL 66 (131)
||..--++|
T Consensus 14 lp~eL~~~l 22 (53)
T 1baz_A 14 WPREVLDLV 22 (53)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555443333
No 159
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=24.34 E-value=1.6e+02 Score=19.47 Aligned_cols=46 Identities=7% Similarity=-0.088 Sum_probs=27.6
Q ss_pred ccchHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGGVKRIS-----GLIYEETRGVLKIFLENVIRDAVTYT 102 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS-----~~ay~el~~vle~fle~I~~dAv~ya 102 (131)
|+...+|+.||+++|+.+=+ ++-.+-+..+++.+++++........
T Consensus 19 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~ 69 (194)
T 3bqz_B 19 GYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQ 69 (194)
T ss_dssp TTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777899999999985422 12223344555556555555444433
No 160
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=24.12 E-value=1e+02 Score=17.31 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=15.3
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHHHHHHHH
Q 047769 62 AIRRLARRGGVKRISGLIYEETRGVLKIFLEN 93 (131)
Q Consensus 62 aIrRLArr~GvkRIS~~ay~el~~vle~fle~ 93 (131)
.+..+|+..|+ ..|+- ++++++.|+++
T Consensus 23 ~l~~~a~~~g~-s~s~~----ir~ai~~~l~~ 49 (55)
T 2k9i_A 23 RLMEIAKEKNL-TLSDV----CRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHTC-CHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHH----HHHHHHHHHHH
Confidence 46677777786 45544 34444555543
No 161
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=23.61 E-value=46 Score=24.51 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=33.5
Q ss_pred HHHHHHhcCc---cccchHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCceecHHHH
Q 047769 63 IRRLARRGGV---KRISGLIYEETRGVL----KIFLENVIRDAVTYTEHARRKTVTAMDV 115 (131)
Q Consensus 63 IrRLArr~Gv---kRIS~~ay~el~~vl----e~fle~I~~dAv~yaeHA~RKTVt~~DV 115 (131)
++++++..|. ..+|+++.+.+...- -.-|+++++.++..+. ...|+.+|+
T Consensus 194 l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 194 AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred HHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 4556666676 479999998886431 2356777777776664 346877776
No 162
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=23.31 E-value=1.6e+02 Score=19.16 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHH
Q 047769 74 RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVY 117 (131)
Q Consensus 74 RIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ 117 (131)
++|++=.++++++|..=|-++=+....|..|.=--.-..+.+..
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr~~SYnRHtL~~d~~e~q~~E 46 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQRLRSYNRHTLVADPYEEAWNQ 46 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccccccccCCCCchHHHHHH
Confidence 58889999999999999999999999998886554334444443
No 163
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.59 E-value=1.7e+02 Score=19.34 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGGVKRIS-----GLIYEETRGVLKIFLENVIRDAVTYT 102 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS-----~~ay~el~~vle~fle~I~~dAv~ya 102 (131)
|+...+|+.||+++|+.+=+ ++=.+-+..+++.+++++........
T Consensus 20 G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~ 70 (189)
T 3geu_A 20 GYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQ 70 (189)
T ss_dssp HHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677899999999975421 12233344555555555554444333
No 164
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=22.52 E-value=1.5e+02 Score=18.65 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 93 NVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 93 ~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
+.++.+-......+--.|+.+++..+|+..|.+
T Consensus 79 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 111 (142)
T 2bl0_C 79 DILRQAFRTFDPEGTGYIPKAALQDALLNLGDR 111 (142)
T ss_dssp HHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 344555555555566689999999999887754
No 165
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=22.23 E-value=1.6e+02 Score=19.26 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=15.4
Q ss_pred cccchHHHHHHHHhcCccc
Q 047769 56 QGITKPAIRRLARRGGVKR 74 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkR 74 (131)
+|+...+|+.||+++|+.+
T Consensus 24 ~G~~~~ti~~Ia~~agvs~ 42 (188)
T 3qkx_A 24 EGLNQLSMLKLAKEANVAA 42 (188)
T ss_dssp SCSTTCCHHHHHHHHTCCH
T ss_pred cCcccCCHHHHHHHhCCCc
Confidence 3677788999999999864
No 166
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=22.23 E-value=80 Score=25.34 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=40.5
Q ss_pred cchHHHHHHHHhcCc--cccchHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHH
Q 047769 58 ITKPAIRRLARRGGV--KRISGLIYEETRGVL----KIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 120 (131)
Q Consensus 58 Ipk~aIrRLArr~Gv--kRIS~~ay~el~~vl----e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALk 120 (131)
|...-+++++++.|. ..+|+++.+.|...- -.=|+++++.|+..++. ..|+.+|+-..++
T Consensus 320 l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~---~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 320 LANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG---KFIDRGELSCLVN 385 (387)
T ss_dssp HHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS---SEECHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC---CcCcHHHCcHhhh
Confidence 334456677777664 569999999887431 13467888888887653 4899999865543
No 167
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=22.08 E-value=95 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHhcCccccch
Q 047769 57 GITKPAIRRLARRGGVKRISG 77 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~ 77 (131)
+.+.++|-|+|++.|..-+++
T Consensus 50 ~vS~aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 50 NSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp TCCHHHHHHHHHHTTCSSHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHH
Confidence 678899999999999876554
No 168
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=21.98 E-value=98 Score=19.08 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.2
Q ss_pred ceecHHHHHHHHHH
Q 047769 108 KTVTAMDVVYALKR 121 (131)
Q Consensus 108 KTVt~~DV~~ALkr 121 (131)
|-+|.++|..||+|
T Consensus 40 KGLt~~EI~~Al~r 53 (54)
T 3ff5_A 40 KGLTDEEIDLAFQQ 53 (54)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHc
Confidence 56888888888876
No 169
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=21.12 E-value=2.1e+02 Score=19.76 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCC
Q 047769 61 PAIRRLARRGGVKRISGLIYEETRGVL-KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 124 (131)
Q Consensus 61 ~aIrRLArr~GvkRIS~~ay~el~~vl-e~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~ 124 (131)
...+.|||+.|+ |+.-.+.+...- ...-+++.+-...+.+-.|+ .-|.+..+.||+..++
T Consensus 18 ~~Wk~LAR~LGl---se~dId~Ie~~~p~dl~eq~~~mL~~W~~r~G~-~ATv~~L~~AL~~i~~ 78 (122)
T 3ezq_B 18 KDWRRLARQLKV---SDTKIDSIEDRYPRNLTERVRESLRIWKNTEKE-NATVAHLVGALRSCQM 78 (122)
T ss_dssp TTHHHHHHHTTC---CHHHHHHHHHHCSSCHHHHHHHHHHHHHHHCTT-TCCHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhCC---CHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhCC-CchHHHHHHHHHHCCC
Confidence 567889999885 333344443221 12334455555566665554 3578888888887765
No 170
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=21.05 E-value=2.3e+02 Score=20.18 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHhcC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 57 GITKPAIRRLARRGG---VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 57 gIpk~aIrRLArr~G---vkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
.++...+.++.+... -..|+ +++....+... +-++.+-......+--+|+.+++..+|+..|.+
T Consensus 83 ~~~~~~~~~l~~~~D~d~dg~I~---~~EF~~~~~~~--~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 149 (220)
T 3sjs_A 83 RLSPQTALRMMRIFDTDFNGHIS---FYEFMAMYKFM--ELAYNLFVMNARARSGTLEPHEILPALQQLGFY 149 (220)
T ss_dssp CCCHHHHHHHHHHHCTTCSSCBC---HHHHHHHHHHH--HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHhCCCCCCcCC---HHHHHHHHHHH--HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCC
Confidence 456667777776653 34455 44444443332 335555555666677789999999999988754
No 171
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.05 E-value=2e+02 Score=19.34 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=25.6
Q ss_pred ccchHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGGVKRIS-----GLIYEETRGVLKIFLENVIRDAV 99 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS-----~~ay~el~~vle~fle~I~~dAv 99 (131)
|+...+|+.||+++|+.+=+ ++-.+-+..+++.+++++.....
T Consensus 26 G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~ 73 (193)
T 2dg8_A 26 GIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHIVAVFD 73 (193)
T ss_dssp CGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccHHHHHHHhCCCchhhheeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999999986422 12223344555555555544433
No 172
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=20.93 E-value=95 Score=19.11 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=15.1
Q ss_pred ccchHHHHHHHHhcCccccchHHHHHHHHHHH
Q 047769 57 GITKPAIRRLARRGGVKRISGLIYEETRGVLK 88 (131)
Q Consensus 57 gIpk~aIrRLArr~GvkRIS~~ay~el~~vle 88 (131)
|++.++|-+++.. -..||++..+.+.++++
T Consensus 20 GVS~sTVSr~ln~--~~~vs~~t~~rV~~~a~ 49 (67)
T 2l8n_A 20 KVSTATVSRALMN--PDKVSQATRNRVEKAAR 49 (67)
T ss_dssp TCCHHHHHHTTTC--CCCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Confidence 5555666555532 23466555554444433
No 173
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.70 E-value=2.6e+02 Score=24.13 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=37.1
Q ss_pred ccchHHHHHHHHHHHHH---------HHHHHHHHHHHHhh----CCCceecHHHHHHHHHHc
Q 047769 74 RISGLIYEETRGVLKIF---------LENVIRDAVTYTEH----ARRKTVTAMDVVYALKRQ 122 (131)
Q Consensus 74 RIS~~ay~el~~vle~f---------le~I~~dAv~yaeH----A~RKTVt~~DV~~ALkr~ 122 (131)
.+++++.+.+......| +.+++.+|...+.. .++.+|+.+||..++...
T Consensus 372 ~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 372 RYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 48899998888877765 44666777666655 457889999999998763
No 174
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=20.60 E-value=99 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=15.7
Q ss_pred cccchHHHHHHHHhcCccc
Q 047769 56 QGITKPAIRRLARRGGVKR 74 (131)
Q Consensus 56 ~gIpk~aIrRLArr~GvkR 74 (131)
+|+...+|+.||+++|+.+
T Consensus 23 ~G~~~~tv~~Ia~~agvs~ 41 (213)
T 3ni7_A 23 TSWEAVRLYDIAARLAVSL 41 (213)
T ss_dssp SCSTTCCHHHHHHHTTSCH
T ss_pred cCccccCHHHHHHHhCCCH
Confidence 3778888999999999764
No 175
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.54 E-value=1.7e+02 Score=19.91 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=38.1
Q ss_pred hHHHH-HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceecHHHHHHHHHHcC
Q 047769 60 KPAIR-RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 123 (131)
Q Consensus 60 k~aIr-RLArr~GvkRIS~~ay~el~~vle~fle~I~~dAv~yaeHA~RKTVt~~DV~~ALkr~G 123 (131)
++.|. +|..++--+|++......|.++ -+.++|=.-|-.+.+..|...+|.+|++..+.-++
T Consensus 13 ka~I~~~LveSGe~erL~~lL~~rL~Ec--GW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~A 75 (101)
T 4dhx_B 13 RAAINQKLIETGERERLKELLRAKLIEC--GWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKG 75 (101)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHH
Confidence 44555 5666666677777666666543 23334444444445555788999999988775443
No 176
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=20.23 E-value=1.5e+02 Score=24.12 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHhcCc-----cccchHHHHHHHHHHHHHHHHHHH----HHHHHHhhCCCceecHHHHHHHHHHcCCc
Q 047769 65 RLARRGGV-----KRISGLIYEETRGVLKIFLENVIR----DAVTYTEHARRKTVTAMDVVYALKRQGRT 125 (131)
Q Consensus 65 RLArr~Gv-----kRIS~~ay~el~~vle~fle~I~~----dAv~yaeHA~RKTVt~~DV~~ALkr~G~~ 125 (131)
.|.|+.|. +.+|+.-.-..+.....-+-+.+. +-+...+-+..+-++.+||+.+|+.++..
T Consensus 172 eLSr~Eg~~GsPEkPLSDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l~~l 241 (284)
T 2ozu_A 172 LLSKREGQAGSPEKPLSDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRML 241 (284)
T ss_dssp HHHHHTTCCBEECSSCCHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHTTCC
T ss_pred HHhhhcCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHCCCE
Confidence 45555443 557877666665544443333332 24555666666778999999999998743
Done!