BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047770
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJN|A Chain A, Crystal Structure Of A Putative Zn-Dependent Hydrolase Of
The Metallo- Beta-Lactamase Superfamily (Tm0207) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJN|B Chain B, Crystal Structure Of A Putative Zn-Dependent Hydrolase Of
The Metallo- Beta-Lactamase Superfamily (Tm0207) From
Thermotoga Maritima At 2.00 A Resolution
Length = 220
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 14/180 (7%)
Query: 61 GYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKF 120
G+ L+ +G +D + V Y + + D +H+ FDHN H G F
Sbjct: 19 GHACFALEXEGKTIVTDPFDESVGYPIPNVTADVVTESHQ------HFDHNAHHLVKGNF 72
Query: 121 LSLDTLHEYLANDTLVLGAEVFVIVSTGRKECVSILKNPDGATTRTWKIPKFSALDDNPR 180
+D Y N + G E F S GR+ +I+ +G + + + +
Sbjct: 73 RVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQ 132
Query: 181 FSQAYTVDERKWKLRLYPMG---TAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237
+ +D + L P+G T K L+ V+ P + + +F+LL VD
Sbjct: 133 VEEIGEID-----VLLVPVGGTYTIGPKEAKEVADLLNAKVIIPXHYKTKYLKFNLLPVD 187
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 13 HYTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKI 69
Y +N++S R E E+ +S F +G KW L P G ++ D L +
Sbjct: 13 SYMWTINNFS-FCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 71
Query: 70 DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLS----LDT 125
+C + V +K +L E RF K +WGF KF+ LD
Sbjct: 72 ----SCPKS-EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFIRRDFLLDE 125
Query: 126 LHEYLANDTLVLGAEVFVI 144
+ L +D L L EV V+
Sbjct: 126 ANGLLPDDKLTLFCEVSVV 144
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 13 HYTVELNSYSKLFRPEKLEIFESGLFEAG---NYKWRLVFYPNGNKQDDGDGYISLYLKI 69
Y +N++S R E E+ +S F +G KW L P G ++ D L +
Sbjct: 12 SYMWTINNFS-FCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 70
Query: 70 DGCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLS----LDT 125
+C + V +K +L E RF K +WGF KF+ LD
Sbjct: 71 ----SCPKS-EVRAKFKFSILNAKGEETKAMESQRAYRFVQGK-DWGFKKFIRRDFLLDE 124
Query: 126 LHEYLANDTLVLGAEVFVI 144
+ L +D L L EV V+
Sbjct: 125 ANGLLPDDKLTLFCEVSVV 143
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 42 NYKWRLV----FYPNGNKQDDGDGYISLYLKIDGCNTCSDN--WSVHVNYKLFVL-YKDN 94
N W+++ FYP+ Q + +L+ CN SD+ WS H L ++ Y+D+
Sbjct: 46 NLPWKIMVMPRFYPDRPHQKS----VGFFLQ---CNAESDSTSWSCHAQAVLKIINYRDD 98
Query: 95 EFLAHRAEGPIRRFDHNKHEWGFGKFLS----LDTLHEYLANDTLVLGAEVFV 143
E R + F H +++WGF F++ D ++ +D + EVFV
Sbjct: 99 EKSFSRRISHL--FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFV 147
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 42 NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDN--WSVHVNYKLFVL-YKDNEFLA 98
N W+++ P + +L+ CN SD+ WS H L ++ Y+D+E
Sbjct: 32 NLPWKIMVMPRFYPDRPHQKSVGFFLQ---CNAESDSTSWSCHAQAVLKIINYRDDEKSF 88
Query: 99 HRAEGPIRRFDHNKHEWGFGKFLSLDTLHE----YLANDTLVLGAEVFV 143
R + F H +++WGF F++ + + ++ +D + EVFV
Sbjct: 89 SRRISHL--FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFV 133
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 42 NYKWRLV----FYPNGNKQDDGDGYISLYLKIDGCNTCSDN--WSVHVNYKLFVL-YKDN 94
N W+++ FYP+ Q + +L+ CN SD+ WS H L ++ Y+D+
Sbjct: 44 NLPWKIMVMPRFYPDRPHQKS----VGFFLQ---CNAESDSTSWSCHAQAVLKIINYRDD 96
Query: 95 EFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE----YLANDTLVLGAEVFV 143
E R + F H +++WGF F++ + + ++ +D + EVFV
Sbjct: 97 EKSFSRRISHL--FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFV 145
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 42 NYKWRLV----FYPNGNKQDDGDGYISLYLKIDGCNTCSDN--WSVHVNYKLFVL-YKDN 94
N W+++ FYP+ Q + +L+ CN SD+ WS H L ++ Y+D+
Sbjct: 46 NLPWKIMVMPRFYPDRPHQ----KSVGFFLQ---CNAESDSTSWSCHAQAVLKIINYRDD 98
Query: 95 EFLAHRAEGPIRRFDHNKHEWGFGKFLS----LDTLHEYLANDTLVLGAEVFV 143
E R + F H +++WGF F++ D ++ +D + EVFV
Sbjct: 99 EKSFSRRISHL--FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFV 147
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 42 NYKWRLV----FYPNGNKQDDGDGYISLYLKIDGCNTCSDN--WSVHVNYKLFVL-YKDN 94
N W+++ FYP+ Q + +L+ CN SD+ WS H L ++ Y+D+
Sbjct: 46 NLPWKIMVMPRFYPDRPHQKS----VGFFLQ---CNAESDSTSWSCHAQAVLKIINYRDD 98
Query: 95 EFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLHE----YLANDTLVLGAEVFV 143
E R + F H +++WGF F++ + + ++ +D + EVFV
Sbjct: 99 EKSFSRRISHL--FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFV 147
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 42 NYKWRLV----FYPNGNKQDDGDGYISLYLKIDGCNTCSDN--WSVHVNYKLFVL-YKDN 94
N W+++ FYP+ Q + +L+ CN SD+ WS H L ++ Y+D+
Sbjct: 56 NLPWKIMVMPRFYPDRPHQKS----VGFFLQ---CNAESDSTSWSCHAQAVLKIINYRDD 108
Query: 95 EFLAHRAEGPIRRFDHNKHEWGFGKFLS----LDTLHEYLANDTLVLGAEVFV 143
E R + F H +++WGF F++ D ++ +D + EVFV
Sbjct: 109 EKSFSRRISHL--FFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFV 157
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 71 GCNTCSDNWSVHVNYKLFVLYKDNEFLAHRAEGPI---RRFDHNKHEWGFGKFLSLDTLH 127
G NT +DNW+V + K V +N L R G + +R K + ++ +D
Sbjct: 794 GSNTLTDNWTVSGSGKAEVEGDNNAML--RLTGKVDVSQRLTDLKAGQKYALYVGVDNRS 851
Query: 128 EYLANDTLVLGAEVFVIVSTGRKECVSILKN 158
A+ T+ G +V STG+ SI KN
Sbjct: 852 TGDASVTVTSGGKVLATNSTGK----SIAKN 878
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,625,332
Number of Sequences: 62578
Number of extensions: 428330
Number of successful extensions: 709
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 14
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)