Query 047770
Match_columns 298
No_of_seqs 267 out of 1916
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03774 MATH_SPOP Speckle-type 99.9 2.4E-26 5.2E-31 179.4 15.3 130 9-145 2-138 (139)
2 cd03772 MATH_HAUSP Herpesvirus 99.9 2.7E-26 5.9E-31 178.6 14.6 125 164-291 4-134 (137)
3 cd03772 MATH_HAUSP Herpesvirus 99.9 1.3E-25 2.8E-30 174.8 16.5 127 11-145 2-134 (137)
4 cd03775 MATH_Ubp21p Ubiquitin- 99.9 7.8E-26 1.7E-30 175.2 14.5 121 13-142 2-134 (134)
5 cd03776 MATH_TRAF6 Tumor Necro 99.9 8E-26 1.7E-30 178.0 11.0 130 12-142 1-147 (147)
6 cd03777 MATH_TRAF3 Tumor Necro 99.9 3.6E-25 7.7E-30 178.8 14.1 134 8-142 35-184 (186)
7 cd00270 MATH_TRAF_C Tumor Necr 99.9 3.5E-25 7.5E-30 175.0 12.9 129 12-141 1-148 (149)
8 cd03775 MATH_Ubp21p Ubiquitin- 99.9 4.9E-25 1.1E-29 170.7 13.0 120 164-288 2-134 (134)
9 cd03780 MATH_TRAF5 Tumor Necro 99.9 6.7E-25 1.5E-29 171.2 13.5 129 12-141 1-147 (148)
10 cd03781 MATH_TRAF4 Tumor Necro 99.9 7.6E-25 1.6E-29 173.3 13.4 129 12-141 1-153 (154)
11 cd03773 MATH_TRIM37 Tripartite 99.9 1.1E-24 2.3E-29 168.7 12.9 125 9-142 2-130 (132)
12 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.6E-24 3.4E-29 168.3 13.1 129 12-141 1-146 (147)
13 cd03773 MATH_TRIM37 Tripartite 99.9 2.7E-24 5.7E-29 166.5 12.4 124 159-288 2-130 (132)
14 cd03771 MATH_Meprin Meprin fam 99.9 5.8E-24 1.2E-28 168.1 13.5 129 11-141 1-166 (167)
15 cd03778 MATH_TRAF2 Tumor Necro 99.9 1.8E-23 3.9E-28 164.0 13.7 133 8-141 15-163 (164)
16 cd03774 MATH_SPOP Speckle-type 99.9 1.1E-23 2.4E-28 164.3 12.1 122 164-291 6-138 (139)
17 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.6E-23 3.4E-28 163.5 11.8 122 164-287 2-147 (148)
18 cd00270 MATH_TRAF_C Tumor Necr 99.9 7.9E-24 1.7E-28 167.3 9.8 123 164-288 2-149 (149)
19 cd03777 MATH_TRAF3 Tumor Necro 99.9 2.7E-23 5.9E-28 167.8 12.7 126 161-289 38-185 (186)
20 cd03776 MATH_TRAF6 Tumor Necro 99.9 1E-23 2.2E-28 165.9 9.6 123 164-288 2-147 (147)
21 cd03779 MATH_TRAF1 Tumor Necro 99.9 3.1E-23 6.8E-28 161.0 11.4 123 164-288 2-147 (147)
22 cd03771 MATH_Meprin Meprin fam 99.9 4E-23 8.7E-28 163.3 11.1 125 161-288 1-167 (167)
23 cd03781 MATH_TRAF4 Tumor Necro 99.9 8E-23 1.7E-27 161.8 11.3 123 164-288 2-154 (154)
24 cd03778 MATH_TRAF2 Tumor Necro 99.9 4E-22 8.6E-27 156.4 12.6 124 161-287 18-163 (164)
25 cd00121 MATH MATH (meprin and 99.9 7.4E-22 1.6E-26 150.9 13.5 122 164-288 2-126 (126)
26 cd00121 MATH MATH (meprin and 99.9 3.8E-21 8.3E-26 146.9 15.3 122 12-142 1-126 (126)
27 PF00917 MATH: MATH domain; I 99.8 1.7E-20 3.7E-25 142.3 11.4 116 18-143 1-119 (119)
28 PF00917 MATH: MATH domain; I 99.8 7.1E-21 1.5E-25 144.4 8.9 113 169-289 1-119 (119)
29 cd03783 MATH_Meprin_Alpha Mepr 99.8 3.3E-19 7.1E-24 139.2 10.6 131 11-141 1-166 (167)
30 cd03782 MATH_Meprin_Beta Mepri 99.8 3.9E-19 8.5E-24 137.9 10.6 129 11-141 1-166 (167)
31 cd03783 MATH_Meprin_Alpha Mepr 99.8 8.8E-19 1.9E-23 136.8 9.4 124 164-288 3-167 (167)
32 cd03782 MATH_Meprin_Beta Mepri 99.8 1.1E-18 2.5E-23 135.4 9.5 123 164-288 3-167 (167)
33 smart00061 MATH meprin and TRA 99.7 4.5E-17 9.7E-22 118.3 12.0 94 14-121 2-95 (95)
34 smart00061 MATH meprin and TRA 99.7 1E-16 2.3E-21 116.3 9.5 92 165-266 2-95 (95)
35 COG5077 Ubiquitin carboxyl-ter 99.5 4.4E-14 9.6E-19 130.8 5.7 131 7-147 34-174 (1089)
36 COG5077 Ubiquitin carboxyl-ter 99.4 2E-13 4.4E-18 126.5 7.4 128 163-295 39-177 (1089)
37 KOG1987 Speckle-type POZ prote 99.0 2E-10 4.4E-15 101.0 3.5 255 14-290 6-294 (297)
38 KOG1987 Speckle-type POZ prote 98.0 8.8E-05 1.9E-09 65.2 11.0 119 164-294 5-130 (297)
39 KOG1863 Ubiquitin carboxyl-ter 97.8 2.1E-05 4.6E-10 80.3 4.6 126 164-294 28-156 (1093)
40 KOG1863 Ubiquitin carboxyl-ter 97.7 4.5E-05 9.8E-10 77.9 4.6 124 14-148 29-156 (1093)
41 KOG0297 TNF receptor-associate 97.2 0.00027 6E-09 64.3 3.0 85 7-92 275-365 (391)
42 KOG0297 TNF receptor-associate 96.7 0.0013 2.9E-08 59.8 3.0 75 163-238 280-365 (391)
43 PF06565 DUF1126: Repeat of un 20.2 69 0.0015 17.9 1.2 10 275-284 5-14 (33)
No 1
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.94 E-value=2.4e-26 Score=179.42 Aligned_cols=130 Identities=29% Similarity=0.462 Sum_probs=107.7
Q ss_pred CCCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEE
Q 047770 9 SPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNY 85 (298)
Q Consensus 9 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f 85 (298)
+...+|+|+|+|||++.+ +.++.+.|++|.+||+ +|+|++||+|+. +++.+|+||||++.+.. .++++|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f 75 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF 75 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEE
Confidence 567899999999999863 4578999999999984 999999999986 45678999999997643 36799999
Q ss_pred EEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEe
Q 047770 86 KLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIV 145 (298)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~ 145 (298)
+|.|+||+++..........+.|.. ..+|||.+||++++|+ +||+||+|+|+|+|+|++
T Consensus 76 ~~~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 76 KFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEEEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 9999999876322222124567864 5789999999999994 899999999999999975
No 2
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.94 E-value=2.7e-26 Score=178.60 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=105.0
Q ss_pred eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCC--CCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCC
Q 047770 164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAA--GKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRH 241 (298)
Q Consensus 164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~--~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~ 241 (298)
+|+|+|+|||.+ ++.+.|+.|.+||++|+|++||+|... +..+++||||.|... ...+.|++.|+|+|+|+|| ..
T Consensus 4 ~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~-~~~~~w~i~a~~~~~l~~~-~~ 80 (137)
T cd03772 4 TFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLRIINY-KD 80 (137)
T ss_pred EEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCc-CCCCCCeEEEEEEEEEEcC-CC
Confidence 899999999998 578999999999999999999999654 235799999999764 4334899999999999999 43
Q ss_pred -Ccceeeeeeeccccccccccccceeecccccc---CcccCCEEEEEEEEEEEE
Q 047770 242 -SNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFLSVS 291 (298)
Q Consensus 242 -~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~i~~ 291 (298)
+.+......+.|......|||++||+|++|++ .||+||+|+|||+|+|-.
T Consensus 81 ~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 81 DEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 34555556678866667899999999999963 399999999999999854
No 3
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.94 E-value=1.3e-25 Score=174.78 Aligned_cols=127 Identities=19% Similarity=0.371 Sum_probs=105.1
Q ss_pred CcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCC-CCCCeEEEEEEEccCCCCCCCCeEEEEEEEEE
Q 047770 11 PAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQD-DGDGYISLYLKIDGCNTCSDNWSVHVNYKLFV 89 (298)
Q Consensus 11 ~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~-~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l 89 (298)
.++++|+|+|||.+ ++.++|++|.+||++|+|++||+|+... +..++|||||.|.+.. ....|++.|+|+|+|
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l 75 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRI 75 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEE
Confidence 57999999999998 4789999999999999999999996521 3458999999998754 344899999999999
Q ss_pred EeCCCC-eeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEe
Q 047770 90 LYKDNE-FLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIV 145 (298)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~ 145 (298)
+||++. ..... ...+.|......|||.+||++++|+ +||+||+|+|+|+|+|-.
T Consensus 76 ~~~~~~~~~~~~--~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 76 INYKDDEPSFSR--RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred EcCCCCcccEEE--eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 999854 22221 1346787666899999999999993 999999999999998743
No 4
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=7.8e-26 Score=175.22 Aligned_cols=121 Identities=26% Similarity=0.579 Sum_probs=102.6
Q ss_pred EEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC----CCCCCeEEEEEEEE
Q 047770 13 HYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT----CSDNWSVHVNYKLF 88 (298)
Q Consensus 13 ~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~----~~~~w~~~~~f~~~ 88 (298)
+|+|+|.|||.+ ++.+.|++|.+|||+|+|.+||+|+. . .+||||||.+.+... .+.+|.+.|+|+|.
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~-~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNS-Q--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCC-C--CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999996 47899999999999999999999986 2 789999999976543 25689999999999
Q ss_pred EEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc--------cceeCCEEEEEEEEE
Q 047770 89 VLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--------EYLANDTLVLGAEVF 142 (298)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~--------~~l~dd~l~i~~~i~ 142 (298)
|+||.++...... ...+.|+....+|||.+||++++|+ |||+||+|+|++.|+
T Consensus 74 l~n~~~~~~~~~~-~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN-VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc-cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999876433222 3568998777899999999999884 899999999999874
No 5
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.93 E-value=8e-26 Score=177.97 Aligned_cols=130 Identities=21% Similarity=0.294 Sum_probs=103.9
Q ss_pred cEEEEEECCcccccC-CCCcce--EEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEEEEE
Q 047770 12 AHYTVELNSYSKLFR-PEKLEI--FESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVHVNY 85 (298)
Q Consensus 12 ~~~~w~I~nfs~~~~-~~~~~~--~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~f 85 (298)
|+|.|+|.+||.++. ++.|+. ++|++|.+ |||+|+|++||||.. ++..+||||||+++++.. ...+|++.|+|
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999998653 455664 88999985 799999999999987 456789999999988654 35679999999
Q ss_pred EEEEEeCCCCeeE----EEecCCeeeeCC-----CCCCccccceeeccccc--cceeCCEEEEEEEEE
Q 047770 86 KLFVLYKDNEFLA----HRAEGPIRRFDH-----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVF 142 (298)
Q Consensus 86 ~~~l~~~~~~~~~----~~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~ 142 (298)
+|.|+||.++... .........|.. ...+|||.+||++++|+ +||+||+|+|+|+|+
T Consensus 80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 9999999865221 111112345752 34679999999999999 899999999999984
No 6
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.93 E-value=3.6e-25 Score=178.76 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=107.3
Q ss_pred cCCCcEEEEEECCcccccC-CCCcc--eEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeE
Q 047770 8 NSPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSV 81 (298)
Q Consensus 8 ~~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~ 81 (298)
....|+|.|+|.+||..+. .+.|+ .++|++|.+| ||+|+|++||||.. .+..+||||||.++++.. ....|++
T Consensus 35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~ 113 (186)
T cd03777 35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 113 (186)
T ss_pred cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCce
Confidence 4557999999999999864 44455 8999999999 99999999999987 456789999999998753 3457999
Q ss_pred EEEEEEEEEeCCCCe----eEEEecCCeeeeC-CC---CCCccccceeeccccc--cceeCCEEEEEEEEE
Q 047770 82 HVNYKLFVLYKDNEF----LAHRAEGPIRRFD-HN---KHEWGFGKFLSLDTLH--EYLANDTLVLGAEVF 142 (298)
Q Consensus 82 ~~~f~~~l~~~~~~~----~~~~~~~~~~~F~-~~---~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~ 142 (298)
.++++|.|++|.+.. ...........|. +. +..||+.+||++++|+ +||+||+|.|+|.|.
T Consensus 114 ~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 114 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred eEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEe
Confidence 999999999997531 1111111234575 32 4579999999999998 899999999999885
No 7
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.93 E-value=3.5e-25 Score=175.02 Aligned_cols=129 Identities=21% Similarity=0.354 Sum_probs=103.7
Q ss_pred cEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEEEEE
Q 047770 12 AHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVHVNY 85 (298)
Q Consensus 12 ~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~f 85 (298)
|+|.|+|.+||.++. .+.++.++|++|.+| ||+|+|++||+|.. ++..+||||||++.++..+ ..+|++.|+|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 689999999999864 245679999999999 99999999999986 3456899999999887543 4679999999
Q ss_pred EEEEEeCCCC--eeE----EEecCCeeeeC-----CCCCCccccceeeccccc--cceeCCEEEEEEEE
Q 047770 86 KLFVLYKDNE--FLA----HRAEGPIRRFD-----HNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEV 141 (298)
Q Consensus 86 ~~~l~~~~~~--~~~----~~~~~~~~~F~-----~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i 141 (298)
+|.|+||.++ ... .......+.|. ....+|||.+||++++|+ +||+||+|+|+|+|
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 9999999874 111 11111233454 135789999999999998 89999999999997
No 8
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.93 E-value=4.9e-25 Score=170.74 Aligned_cols=120 Identities=20% Similarity=0.330 Sum_probs=101.7
Q ss_pred eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCC-----CCCCeEEEEEEEEEecC
Q 047770 164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDP-----APKRAVFAEFDLLLVDQ 238 (298)
Q Consensus 164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~-----~~~~~~~~~f~~~l~~~ 238 (298)
+|+|+|.+||.+ ++.+.|++|.+||++|+|.+||+|... .+|+|+||.+... +. .++|++.|+|+|+|+||
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~-~~~~~~~~~~~~v~a~f~~~l~n~ 77 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPE-EEEKAPLDEDWSVCAQFALVISNP 77 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCc-ccccccCCCCCeEEEEEEEEEEcC
Confidence 799999999996 478999999999999999999999764 6799999999765 33 23899999999999999
Q ss_pred CCCC-cceeeeeeeccccccccccccceeecccccc-------CcccCCEEEEEEEEE
Q 047770 239 KRHS-NSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ-------SDVVGDTLIIELQFL 288 (298)
Q Consensus 239 ~~~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~-------~fl~~D~l~i~~~v~ 288 (298)
.++ .+......+.|.....+|||.+||++++|++ .||+||+|+|+|.|.
T Consensus 78 -~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 78 -GDPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred -CCCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 443 3455556788987667899999999999983 299999999999873
No 9
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.93 E-value=6.7e-25 Score=171.17 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=104.8
Q ss_pred cEEEEEECCcccccC-CCCcc--eEEcCcE--EeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEEEEE
Q 047770 12 AHYTVELNSYSKLFR-PEKLE--IFESGLF--EAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVHVNY 85 (298)
Q Consensus 12 ~~~~w~I~nfs~~~~-~~~~~--~~~S~~f--~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~~~f 85 (298)
|++.|+|.+|+.++. .+.|+ .+.|++| .++||+|+|++||||.. .+..+||||||.++++..+ ...|++++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 689999999999864 45566 8999999 89999999999999988 4567899999999986443 4679999999
Q ss_pred EEEEEeCCCCee----EEEecCCeeeeCCC----CCCccccceeeccccc----cceeCCEEEEEEEE
Q 047770 86 KLFVLYKDNEFL----AHRAEGPIRRFDHN----KHEWGFGKFLSLDTLH----EYLANDTLVLGAEV 141 (298)
Q Consensus 86 ~~~l~~~~~~~~----~~~~~~~~~~F~~~----~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i 141 (298)
+|+|++|.+... +...+...+.|... +..||+.+||++++|+ +||+||+|+|+|.|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999975522 22111124568643 4579999999999997 79999999999976
No 10
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.92 E-value=7.6e-25 Score=173.33 Aligned_cols=129 Identities=19% Similarity=0.325 Sum_probs=103.4
Q ss_pred cEEEEEECCcccccCC--C-CcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeEEEEE
Q 047770 12 AHYTVELNSYSKLFRP--E-KLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSVHVNY 85 (298)
Q Consensus 12 ~~~~w~I~nfs~~~~~--~-~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~~~f 85 (298)
|.|.|+|.+||.++.. . .++.+.|++|.+| ||+|+|++||||.. .+..+|||+||+++++..+. ..|+++++|
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6899999999988642 2 4689999999999 99999999999987 45678999999999865433 589999999
Q ss_pred EEEEEeCCCC--e--eEE----EecCCeeeeCC--------CCCCccccceeeccccc--cceeCCEEEEEEEE
Q 047770 86 KLFVLYKDNE--F--LAH----RAEGPIRRFDH--------NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEV 141 (298)
Q Consensus 86 ~~~l~~~~~~--~--~~~----~~~~~~~~F~~--------~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i 141 (298)
+|+|+||.+. . ... ........|.. .+.+||+.+||++++|+ +||+||+|+|+|+|
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 9999999764 1 111 11112344542 34579999999999999 99999999999987
No 11
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=1.1e-24 Score=168.73 Aligned_cols=125 Identities=25% Similarity=0.421 Sum_probs=103.0
Q ss_pred CCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEE
Q 047770 9 SPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLF 88 (298)
Q Consensus 9 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~ 88 (298)
+..++++|+|.|||.+.. .++.++|++|.+|||+|+|.+||+|+. ++..+||||||.+.++. .|.+.++|+|+
T Consensus 2 ~~~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~ 74 (132)
T cd03773 2 PPYDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVE 74 (132)
T ss_pred CCCcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEE
Confidence 457789999999999852 468999999999999999999999987 45678999999997642 36788999999
Q ss_pred EEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc--cceeC--CEEEEEEEEE
Q 047770 89 VLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--EYLAN--DTLVLGAEVF 142 (298)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~--~~l~d--d~l~i~~~i~ 142 (298)
|+||.++...... ...+.|.. ..+|||.+||++++|+ |||.| |+|+|+|.|+
T Consensus 75 llnq~~~~~~~~~-~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 75 MVHQANPTKNIKR-EFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred EEcCCCCccceEE-eccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 9999544222222 24567865 4779999999999997 99999 9999999986
No 12
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.92 E-value=1.6e-24 Score=168.25 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=102.0
Q ss_pred cEEEEEECCcccccC-C--CCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEEEEE
Q 047770 12 AHYTVELNSYSKLFR-P--EKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVHVNY 85 (298)
Q Consensus 12 ~~~~w~I~nfs~~~~-~--~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~~~f 85 (298)
|++.|+|.||++..+ . +....++||+|..+ ||+|+|++||||.. .+..+|+||||+++++.. ....|++++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 689999999997654 2 22347999999875 99999999999988 456889999999998643 34579999999
Q ss_pred EEEEEeCCCCee---EEEecCCeeeeC----CCCCCccccceeeccccc----cceeCCEEEEEEEE
Q 047770 86 KLFVLYKDNEFL---AHRAEGPIRRFD----HNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEV 141 (298)
Q Consensus 86 ~~~l~~~~~~~~---~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i 141 (298)
+|+|++|.+... ........+.|. ..+..||+.+||++++|+ +||+||+++|+|+|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 999999976422 221101135686 344579999999999997 79999999999987
No 13
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=2.7e-24 Score=166.49 Aligned_cols=124 Identities=27% Similarity=0.471 Sum_probs=103.8
Q ss_pred CCCCceeEEEeCCcccCC--CCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEe
Q 047770 159 PDGATTRTWKIPKFSALD--DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLV 236 (298)
Q Consensus 159 p~~~~~~~w~i~~fs~l~--~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~ 236 (298)
|+++ +++|+|.+||.+. ++.+.|+.|.++|++|+|++||+|...+.++|+|+||++..+ . .+.+.++|+|+|+
T Consensus 2 ~~~~-~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~-~---~~~~~~~~~l~ll 76 (132)
T cd03773 2 PPYD-SATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG-L---GEASKYEYRVEMV 76 (132)
T ss_pred CCCc-ccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC-C---CCceeEEEEEEEE
Confidence 7787 9999999999985 368999999999999999999999877678899999998763 1 3678889999999
Q ss_pred cCCCCCcceeeeeeeccccccccccccceeeccccccC-cccC--CEEEEEEEEE
Q 047770 237 DQKRHSNSFKRQYSKWFSAQCYVLGHRKFISLTDLYQS-DVVG--DTLIIELQFL 288 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~-fl~~--D~l~i~~~v~ 288 (298)
||....++......+.|.. ..+|||.+||++++|++. ||+| |+|+|+|.|+
T Consensus 77 nq~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 77 HQANPTKNIKREFASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred cCCCCccceEEeccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 9921223555555677865 457999999999999876 9999 9999999986
No 14
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.91 E-value=5.8e-24 Score=168.06 Aligned_cols=129 Identities=19% Similarity=0.376 Sum_probs=101.7
Q ss_pred CcEEEEEECCccccc-CCCCcceEEcCcE-EeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCe-EEEEEE
Q 047770 11 PAHYTVELNSYSKLF-RPEKLEIFESGLF-EAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWS-VHVNYK 86 (298)
Q Consensus 11 ~~~~~w~I~nfs~~~-~~~~~~~~~S~~f-~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~-~~~~f~ 86 (298)
++.|.|+|.|||.++ +.+.++.++|++| .++||+|+|++||||.. . ..+||||||+++++.. ..++|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 468999999999996 4677889999999 89999999999999998 4 6789999999987644 367899 589999
Q ss_pred EEEEeCCCC-------eeEEEecCCe-------eeeCC-----------------CCCCccccceeeccccc--cceeCC
Q 047770 87 LFVLYKDNE-------FLAHRAEGPI-------RRFDH-----------------NKHEWGFGKFLSLDTLH--EYLAND 133 (298)
Q Consensus 87 ~~l~~~~~~-------~~~~~~~~~~-------~~F~~-----------------~~~~~G~~~fi~~~~l~--~~l~dd 133 (298)
|+|++|... ..+...+... ..|+. .+.+|||.+||++++|. +||+||
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d 158 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD 158 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence 999999742 1111111100 01221 23479999999999999 899999
Q ss_pred EEEEEEEE
Q 047770 134 TLVLGAEV 141 (298)
Q Consensus 134 ~l~i~~~i 141 (298)
+|.|++++
T Consensus 159 tl~i~~~~ 166 (167)
T cd03771 159 DLIILLDF 166 (167)
T ss_pred EEEEEEEe
Confidence 99999886
No 15
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.91 E-value=1.8e-23 Score=163.96 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=105.2
Q ss_pred cCCCcEEEEEECCcccccCC---CCcceEEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeE
Q 047770 8 NSPPAHYTVELNSYSKLFRP---EKLEIFESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSV 81 (298)
Q Consensus 8 ~~~~~~~~w~I~nfs~~~~~---~~~~~~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~ 81 (298)
....|++.|+|.||+++... +....++||+|.. +||+|+|++||||++ .+.+.|||||++++++..++ ++|++
T Consensus 15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf 93 (164)
T cd03778 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF 93 (164)
T ss_pred cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCce
Confidence 45689999999999998642 2234799999976 489999999999987 45677999999999998876 89999
Q ss_pred EEEEEEEEEeCCCCee---EEEecCCeeeeC----CCCCCccccceeeccccc---cceeCCEEEEEEEE
Q 047770 82 HVNYKLFVLYKDNEFL---AHRAEGPIRRFD----HNKHEWGFGKFLSLDTLH---EYLANDTLVLGAEV 141 (298)
Q Consensus 82 ~~~f~~~l~~~~~~~~---~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i 141 (298)
..+++|+|+||++... +...+.....|. ..+.+|||..|+++++|. +||+||+|.|+|.|
T Consensus 94 ~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred eeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 9999999999976411 111111112352 234579999999999996 89999999999976
No 16
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.91 E-value=1.1e-23 Score=164.29 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=99.8
Q ss_pred eeEEEeCCcccCC---CCCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770 164 TRTWKIPKFSALD---DNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237 (298)
Q Consensus 164 ~~~w~i~~fs~l~---~~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~ 237 (298)
+|+|+|.+||.+. ++.+.|++|.+||+ +|+|++||+|...+..+|+|+||++... . .+++.|+|+|.|+|
T Consensus 6 ~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~-~---~~~v~a~f~~~l~n 81 (139)
T cd03774 6 CYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-P---KSEVRAKFKFSILN 81 (139)
T ss_pred EEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC-C---CCcEEEEEEEEEEe
Confidence 8999999999864 46899999999985 9999999999876667899999998753 1 46799999999999
Q ss_pred CCCCCcce--eeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEE
Q 047770 238 QKRHSNSF--KRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVS 291 (298)
Q Consensus 238 ~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~ 291 (298)
| .+.... .....+.|.. ..+|||.+||++++|+++ ||+||+|+|+|+|+|++
T Consensus 82 ~-~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 82 A-KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred c-CCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 9 443321 2223466754 467999999999999743 99999999999999975
No 17
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.90 E-value=1.6e-23 Score=163.49 Aligned_cols=122 Identities=21% Similarity=0.338 Sum_probs=102.1
Q ss_pred eeEEEeCCcccCC-----CC--Cccccee--eeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770 164 TRTWKIPKFSALD-----DN--PRFSQAY--TVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD 232 (298)
Q Consensus 164 ~~~w~i~~fs~l~-----~~--~~~S~~f--~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~ 232 (298)
.++|+|.+|+.++ ++ .+.|+.| .++||+|+|++||||...+.++|+||||+++++ +.++ .|++.++++
T Consensus 2 ~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g-~~D~~l~wp~~~~~t 80 (148)
T cd03780 2 KLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRG-EFDSLLQWPFRQRVT 80 (148)
T ss_pred EEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecC-ccccccCcceEEEEE
Confidence 6899999999975 23 6999999 899999999999999987788999999999988 6666 999999999
Q ss_pred EEEecCCCCC-cceeee--e---eeccccc----cccccccceeecccccc---CcccCCEEEEEEEE
Q 047770 233 LLLVDQKRHS-NSFKRQ--Y---SKWFSAQ----CYVLGHRKFISLTDLYQ---SDVVGDTLIIELQF 287 (298)
Q Consensus 233 ~~l~~~~~~~-~~~~~~--~---~~~F~~~----~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v 287 (298)
|.|++| ... .++... . ...|+.+ +.+||+++||++++|++ .||.||+++|+|.|
T Consensus 81 fsLlDq-~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQ-SGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECC-CCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999 322 231111 1 3568665 55799999999999986 49999999999987
No 18
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.90 E-value=7.9e-24 Score=167.26 Aligned_cols=123 Identities=25% Similarity=0.377 Sum_probs=100.5
Q ss_pred eeEEEeCCcccCC-------CCCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770 164 TRTWKIPKFSALD-------DNPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD 232 (298)
Q Consensus 164 ~~~w~i~~fs~l~-------~~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~ 232 (298)
+|+|+|.+||.++ .+.+.|+.|.++ |++|+|++||+|..++.++|+||||++.++ ..+. +|++.++|+
T Consensus 2 ~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~-~~d~~~~w~~~~~~~ 80 (149)
T cd00270 2 VLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKG-EYDALLEWPFRGKIT 80 (149)
T ss_pred EEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEecc-CCCccccCCccceEE
Confidence 7999999999974 257899999999 999999999999876677899999999887 5442 899999999
Q ss_pred EEEecCCCCC---cceeeee-----eeccc-----cccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770 233 LLLVDQKRHS---NSFKRQY-----SKWFS-----AQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL 288 (298)
Q Consensus 233 ~~l~~~~~~~---~~~~~~~-----~~~F~-----~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~ 288 (298)
|.|+|| .++ ++..... .+.|. ....+|||.+||++++|+++ ||+||+|+|+|+|.
T Consensus 81 ~~l~d~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQ-SDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECC-CCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999 442 3322221 23454 13467999999999999986 99999999999984
No 19
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.90 E-value=2.7e-23 Score=167.81 Aligned_cols=126 Identities=22% Similarity=0.317 Sum_probs=103.7
Q ss_pred CCceeEEEeCCcccCC-----CC--CcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEE
Q 047770 161 GATTRTWKIPKFSALD-----DN--PRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFA 229 (298)
Q Consensus 161 ~~~~~~w~i~~fs~l~-----~~--~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~ 229 (298)
.+ .|+|+|.+||..+ ++ .+.|+.|.++ ||+|+|++||||.+.+.++|+|+||+++++ +.++ .|++.+
T Consensus 38 ~G-~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~g-e~D~~L~WP~~~ 115 (186)
T cd03777 38 NG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFKQ 115 (186)
T ss_pred ce-EEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecC-CcccccCCceeE
Confidence 45 9999999999864 13 6999999999 999999999999987788999999999988 6665 899999
Q ss_pred EEEEEEecCCCCC-cceeee-----eeeccccc----cccccccceeeccccccC-cccCCEEEEEEEEEE
Q 047770 230 EFDLLLVDQKRHS-NSFKRQ-----YSKWFSAQ----CYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLS 289 (298)
Q Consensus 230 ~f~~~l~~~~~~~-~~~~~~-----~~~~F~~~----~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i 289 (298)
+++|.|++| .+. .+.... ....|..+ +.+||+++||++++|++. ||+||+++|+|.|..
T Consensus 116 ~~tfsLlDQ-~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 116 KVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEcC-CCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 999999999 321 222111 12457532 357999999999999988 999999999998863
No 20
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.90 E-value=1e-23 Score=165.94 Aligned_cols=123 Identities=23% Similarity=0.260 Sum_probs=98.9
Q ss_pred eeEEEeCCcccCC-----CC--Ccccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770 164 TRTWKIPKFSALD-----DN--PRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD 232 (298)
Q Consensus 164 ~~~w~i~~fs~l~-----~~--~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~ 232 (298)
.|+|+|.+||.++ ++ .+.|+.|.+ +||+|+|++||+|...+..+|+|+||++.++ +.+. +|++.++|+
T Consensus 2 ~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~-~~d~~l~wpv~a~~~ 80 (147)
T cd03776 2 IYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQG-ENDSHLDWPFQGTIT 80 (147)
T ss_pred EEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEecc-CCCcccCCcccceeE
Confidence 7999999999754 23 378999985 7999999999999887778899999999886 5433 899999999
Q ss_pred EEEecCCCCC-cceeee-----eeecccc-----ccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770 233 LLLVDQKRHS-NSFKRQ-----YSKWFSA-----QCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL 288 (298)
Q Consensus 233 ~~l~~~~~~~-~~~~~~-----~~~~F~~-----~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~ 288 (298)
|+|+|| .+. +++... ....|.. .+.+|||.+||++++|++. ||+||+|+|+|+|.
T Consensus 81 ~~lldq-~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQ-SEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECC-CcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 999999 432 232211 1245753 2357999999999999987 99999999999984
No 21
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.90 E-value=3.1e-23 Score=160.98 Aligned_cols=123 Identities=24% Similarity=0.275 Sum_probs=99.9
Q ss_pred eeEEEeCCcccCC-----C--CCcccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770 164 TRTWKIPKFSALD-----D--NPRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD 232 (298)
Q Consensus 164 ~~~w~i~~fs~l~-----~--~~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~ 232 (298)
.++|+|.||++.. + ..++|+.|.. .||+|+|++||||.+.+.++|+|+||+++++ +.++ .|++.++++
T Consensus 2 ~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g-~~D~~l~wpv~~~~t 80 (147)
T cd03779 2 TFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKG-EYDALLPWPFRHKVT 80 (147)
T ss_pred eEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecC-CcccccCcceEEEEE
Confidence 6899999999754 1 3689999987 4999999999999987788999999999987 5555 899999999
Q ss_pred EEEecCCCCCccee--eee---eeccc----cccccccccceeecccccc---CcccCCEEEEEEEEE
Q 047770 233 LLLVDQKRHSNSFK--RQY---SKWFS----AQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFL 288 (298)
Q Consensus 233 ~~l~~~~~~~~~~~--~~~---~~~F~----~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~ 288 (298)
|.|++| .+..+.. ... .+.|+ ..+.+||+++||++++|++ .||+||+++|+|+|.
T Consensus 81 fsLlDq-~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQ-NNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECC-CCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 999999 4323321 111 25686 3345799999999999987 499999999999983
No 22
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.89 E-value=4e-23 Score=163.26 Aligned_cols=125 Identities=23% Similarity=0.366 Sum_probs=99.0
Q ss_pred CCceeEEEeCCcccCC-C----CCccccee-eeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCe-EEEEE
Q 047770 161 GATTRTWKIPKFSALD-D----NPRFSQAY-TVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRA-VFAEF 231 (298)
Q Consensus 161 ~~~~~~w~i~~fs~l~-~----~~~~S~~f-~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~-~~~~f 231 (298)
|+ +|+|+|.+||.++ + ..+.|+.| .++||+|+|++||+|... .++|+||||+++++ +.++ +|+ +.+++
T Consensus 1 cp-~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g-~~d~~L~WP~v~a~~ 77 (167)
T cd03771 1 CP-EAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSG-ENDDVLEWPCPNRQA 77 (167)
T ss_pred CC-eEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecC-CccccccCcceeEEE
Confidence 45 8999999999985 2 47899998 999999999999999987 78899999999987 5554 899 58999
Q ss_pred EEEEecCCC---CCcceeeeee------------ecccc-----------------ccccccccceeeccccccC-cccC
Q 047770 232 DLLLVDQKR---HSNSFKRQYS------------KWFSA-----------------QCYVLGHRKFISLTDLYQS-DVVG 278 (298)
Q Consensus 232 ~~~l~~~~~---~~~~~~~~~~------------~~F~~-----------------~~~~~G~~~fi~~~~L~~~-fl~~ 278 (298)
+|+|++|.. ...+...... ..|++ .+.+|||++||++++|+++ ||+|
T Consensus 78 t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~ 157 (167)
T cd03771 78 TMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKG 157 (167)
T ss_pred EEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcC
Confidence 999999931 1123222110 11322 2247999999999999998 9999
Q ss_pred CEEEEEEEEE
Q 047770 279 DTLIIELQFL 288 (298)
Q Consensus 279 D~l~i~~~v~ 288 (298)
|+|.|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999874
No 23
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.89 E-value=8e-23 Score=161.78 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=100.5
Q ss_pred eeEEEeCCcccCC----C---CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEE
Q 047770 164 TRTWKIPKFSALD----D---NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFD 232 (298)
Q Consensus 164 ~~~w~i~~fs~l~----~---~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~ 232 (298)
.|.|+|.+||.++ . +.+.|+.|.++ ||+|+|++||+|...+.++|+|+||+++++ +.++ .|++.++++
T Consensus 2 ~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~g-e~d~~l~wp~~a~~~ 80 (154)
T cd03781 2 TLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPG-EYDNLLEWPFSHRIT 80 (154)
T ss_pred EEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecC-CcccccCCceeeEEE
Confidence 7899999999864 1 46899999999 999999999999887778899999999987 5544 899999999
Q ss_pred EEEecCCCCC--c---ceeee-----eeecccc--------ccccccccceeeccccccC-cccCCEEEEEEEEE
Q 047770 233 LLLVDQKRHS--N---SFKRQ-----YSKWFSA--------QCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFL 288 (298)
Q Consensus 233 ~~l~~~~~~~--~---~~~~~-----~~~~F~~--------~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~ 288 (298)
|+|++| .++ . +.... ....|+. .+.+||+.+||++++|++. ||+||+|+|+|+|.
T Consensus 81 ~~llDq-~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQ-SDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECC-CCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 999999 432 1 22111 1244553 3457999999999999977 99999999999883
No 24
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.88 E-value=4e-22 Score=156.38 Aligned_cols=124 Identities=21% Similarity=0.328 Sum_probs=104.0
Q ss_pred CCceeEEEeCCcccCCC-------CCcccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEE
Q 047770 161 GATTRTWKIPKFSALDD-------NPRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFA 229 (298)
Q Consensus 161 ~~~~~~w~i~~fs~l~~-------~~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~ 229 (298)
.+ +++|+|+||+++.. ..++||.|.. +||+|+|++||+|++.+++.|||+|++++++ +.++ +|++..
T Consensus 18 ~g-~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~G-e~D~~L~WPf~~ 95 (164)
T cd03778 18 DG-VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPFNQ 95 (164)
T ss_pred CC-EEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecC-CcCcccCCceee
Confidence 45 99999999998652 2688888875 5899999999999988889999999999999 7777 999999
Q ss_pred EEEEEEecCCCCCcceeeeee-----ecccc----ccccccccceeeccccccC--cccCCEEEEEEEE
Q 047770 230 EFDLLLVDQKRHSNSFKRQYS-----KWFSA----QCYVLGHRKFISLTDLYQS--DVVGDTLIIELQF 287 (298)
Q Consensus 230 ~f~~~l~~~~~~~~~~~~~~~-----~~F~~----~~~~~G~~~fi~~~~L~~~--fl~~D~l~i~~~v 287 (298)
+++|.|+|| .+.+|+..... ..|++ .+.+||++.|++.++|++. ||+||+|.|+|.|
T Consensus 96 ~itl~llDQ-~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECC-CCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 999999999 56666654432 24533 3457999999999999863 9999999999987
No 25
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.88 E-value=7.4e-22 Score=150.87 Aligned_cols=122 Identities=36% Similarity=0.591 Sum_probs=103.9
Q ss_pred eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC-CCeEEEEEEEEEecCCCCC
Q 047770 164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP-KRAVFAEFDLLLVDQKRHS 242 (298)
Q Consensus 164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~-~~~~~~~f~~~l~~~~~~~ 242 (298)
+|+|+|.+|+...++.+.|+.|.++|++|+|++||+|... ..+++||||+|.+. .... .|++.++|+|+|+++ .++
T Consensus 2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~ 78 (126)
T cd00121 2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKG-ESDLEKWSVRAEFTLKLVNQ-NGG 78 (126)
T ss_pred EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCC-CCCCCCCcEEEEEEEEEECC-CCC
Confidence 7999999999855688999999999999999999999765 57799999999876 4433 799999999999999 446
Q ss_pred cceeeeeeeccc-cccccccccceeeccccccCc-ccCCEEEEEEEEE
Q 047770 243 NSFKRQYSKWFS-AQCYVLGHRKFISLTDLYQSD-VVGDTLIIELQFL 288 (298)
Q Consensus 243 ~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~f-l~~D~l~i~~~v~ 288 (298)
++......+.|. ....+|||++||+|++|++.+ ++||+|+|+|+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 79 KSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred ccceEeccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 666666666663 445789999999999999985 9999999999984
No 26
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.87 E-value=3.8e-21 Score=146.91 Aligned_cols=122 Identities=34% Similarity=0.642 Sum_probs=100.6
Q ss_pred cEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEe
Q 047770 12 AHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLY 91 (298)
Q Consensus 12 ~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~ 91 (298)
++|.|+|.+|+.. .++.++|+.|.++|++|+|.+||+|.. . ..+||||||.|.+.......|++.++|+|+|+|
T Consensus 1 ~~~~~~i~~~~~~----~~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSEL----EGESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCCC----CCcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 4799999999982 268999999999999999999999986 2 678999999998876545679999999999999
Q ss_pred CCCC-eeEEEecCCeeeeC-CCCCCccccceeeccccc-cc-eeCCEEEEEEEEE
Q 047770 92 KDNE-FLAHRAEGPIRRFD-HNKHEWGFGKFLSLDTLH-EY-LANDTLVLGAEVF 142 (298)
Q Consensus 92 ~~~~-~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~l~-~~-l~dd~l~i~~~i~ 142 (298)
+++. ..... ..+.|. ....+|||.+||++++|+ .+ +.||+|+|+|+|.
T Consensus 75 ~~~~~~~~~~---~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEe---ccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 9833 33332 223442 456899999999999999 44 9999999999984
No 27
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.84 E-value=1.7e-20 Score=142.31 Aligned_cols=116 Identities=31% Similarity=0.648 Sum_probs=95.6
Q ss_pred ECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeEEEEEEEEEEeCCCCe
Q 047770 18 LNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSVHVNYKLFVLYKDNEF 96 (298)
Q Consensus 18 I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~~~f~~~l~~~~~~~ 96 (298)
|+|||++.. .+..+.|+.|.++|++|+|.+||+|+ .++||+||.|....... ..|++.+++++.+++++++.
T Consensus 1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 789999972 23344558999999999999999975 67999999999886543 68999999999999998885
Q ss_pred eEEEecCCeeeeCCCCCCccccceeeccccc--cceeCCEEEEEEEEEE
Q 047770 97 LAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFV 143 (298)
Q Consensus 97 ~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i 143 (298)
..... ..+.|+. ..+|||.+||++++|. .|+.||+|+|+|+|+|
T Consensus 74 ~~~~~--~~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRI--KSHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEE--ECEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeee--eeeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 33322 2578975 4899999999999999 4799999999999986
No 28
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.84 E-value=7.1e-21 Score=144.37 Aligned_cols=113 Identities=28% Similarity=0.462 Sum_probs=93.0
Q ss_pred eCCcccCCC--CCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEEEEEEecCCCCCcc
Q 047770 169 IPKFSALDD--NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEFDLLLVDQKRHSNS 244 (298)
Q Consensus 169 i~~fs~l~~--~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f~~~l~~~~~~~~~ 244 (298)
|+|||++.. ..+.|+.+.++|++|+|.+||+|+ ++++++||+|..+ +... +|++.++++++|+++ .+..
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~-~~~~~~~w~~~~~~~~~~~~~--~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKG-ENDSDLEWSIEAEFRFRLLNQ--NGKS 73 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECS-TTGGGSSSSEEEEEEEEEE-T--TSCE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeec-ccccccceeeeEEEEEEEecC--CCCc
Confidence 689999873 334558899999999999999986 5699999999987 5543 899999999999999 3333
Q ss_pred eeeee-eeccccccccccccceeeccccccC-cccCCEEEEEEEEEE
Q 047770 245 FKRQY-SKWFSAQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLS 289 (298)
Q Consensus 245 ~~~~~-~~~F~~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i 289 (298)
..... .+.|... .+|||.+||+|++|+++ |++||+|+|+|+|+|
T Consensus 74 ~~~~~~~~~F~~~-~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIKSHSFNNP-SSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEECEEECTT-SEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeeeeeEEeee-cccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 33333 4788764 57999999999999999 799999999999987
No 29
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.80 E-value=3.3e-19 Score=139.21 Aligned_cols=131 Identities=20% Similarity=0.410 Sum_probs=100.6
Q ss_pred CcEEEEEECCcccccC-CCCcceEEcCcEEeC-CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeE-EEEEE
Q 047770 11 PAHYTVELNSYSKLFR-PEKLEIFESGLFEAG-NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSV-HVNYK 86 (298)
Q Consensus 11 ~~~~~w~I~nfs~~~~-~~~~~~~~S~~f~~~-g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~-~~~f~ 86 (298)
++.+.|+|.||+++.+ ..++..++||+|... ||+.+|++||||+...+.+.|||||+++++++.+ .++|++ .-+.+
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 4578999999999764 235678999999874 9999999999998633567799999999998764 678995 56899
Q ss_pred EEEEeCCCC---ee-E---EEecC--C------eeeeCC--------------CCCCccccceeeccccc--cceeCCEE
Q 047770 87 LFVLYKDNE---FL-A---HRAEG--P------IRRFDH--------------NKHEWGFGKFLSLDTLH--EYLANDTL 135 (298)
Q Consensus 87 ~~l~~~~~~---~~-~---~~~~~--~------~~~F~~--------------~~~~~G~~~fi~~~~l~--~~l~dd~l 135 (298)
|+|+||++. .. . ..... . ...|+. .+.++||..||+++.|. +||+||+|
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl 160 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL 160 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence 999999752 11 0 11100 0 011332 24589999999999998 99999999
Q ss_pred EEEEEE
Q 047770 136 VLGAEV 141 (298)
Q Consensus 136 ~i~~~i 141 (298)
.|.+++
T Consensus 161 fI~~~~ 166 (167)
T cd03783 161 IIFVDF 166 (167)
T ss_pred EEEEec
Confidence 999876
No 30
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.80 E-value=3.9e-19 Score=137.93 Aligned_cols=129 Identities=14% Similarity=0.313 Sum_probs=101.0
Q ss_pred CcEEEEEECCcccccC-CCCcceEEcCcEEe-CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEE-EEEE
Q 047770 11 PAHYTVELNSYSKLFR-PEKLEIFESGLFEA-GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVH-VNYK 86 (298)
Q Consensus 11 ~~~~~w~I~nfs~~~~-~~~~~~~~S~~f~~-~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~-~~f~ 86 (298)
++.+.|+|.||+++.+ .+++..++||+|.. .||+.++++||||.+ . +.+|||||+++++++.+ .++||+. -+.+
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~-~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-D-YPGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-C-CCCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 4679999999999865 45678899999965 699999999999997 3 36799999999998764 6789999 8999
Q ss_pred EEEEeCCCC----ee-EE--EecC---Ce--eee--CC----------C-------CCCccccceeeccccc--cceeCC
Q 047770 87 LFVLYKDNE----FL-AH--RAEG---PI--RRF--DH----------N-------KHEWGFGKFLSLDTLH--EYLAND 133 (298)
Q Consensus 87 ~~l~~~~~~----~~-~~--~~~~---~~--~~F--~~----------~-------~~~~G~~~fi~~~~l~--~~l~dd 133 (298)
|+|+||++. .+ .. ..+. .. ..| +. . +.++||..||++++|. .||+||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 999999752 11 11 1100 01 124 21 1 4689999999999998 999999
Q ss_pred EEEEEEEE
Q 047770 134 TLVLGAEV 141 (298)
Q Consensus 134 ~l~i~~~i 141 (298)
+|.|-+++
T Consensus 159 ~ifi~~~~ 166 (167)
T cd03782 159 DVIFLLTM 166 (167)
T ss_pred eEEEEEec
Confidence 99998775
No 31
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.78 E-value=8.8e-19 Score=136.83 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=98.0
Q ss_pred eeEEEeCCcccCCC-----CCcccceeee-CCeeEEEEEeeCCCCC-CCCCeEEEEEEeccCCCCCC--CCeE-EEEEEE
Q 047770 164 TRTWKIPKFSALDD-----NPRFSQAYTV-DERKWKLRLYPMGTAA-GKGEFLALHLMLVDVLDPAP--KRAV-FAEFDL 233 (298)
Q Consensus 164 ~~~w~i~~fs~l~~-----~~~~S~~f~~-~g~~w~i~~yp~G~~~-~~~~~lsv~L~~~~~~~~~~--~~~~-~~~f~~ 233 (298)
.++|+|+||+++.+ ..++||.|.. .|++.+|++||+|+.. +.+.|+|||++++++ +.++ +|++ .-+++|
T Consensus 3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~G-e~D~~L~WP~~~~~itl 81 (167)
T cd03783 3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSG-ENDAVLEWPALNRQAII 81 (167)
T ss_pred ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecc-cCCCcccCCCcCCEEEE
Confidence 78999999998652 4689999977 5999999999999864 568899999999999 7777 9995 679999
Q ss_pred EEecCCC---CCcceeeee-------------eeccccc--------------cccccccceeeccccccC-cccCCEEE
Q 047770 234 LLVDQKR---HSNSFKRQY-------------SKWFSAQ--------------CYVLGHRKFISLTDLYQS-DVVGDTLI 282 (298)
Q Consensus 234 ~l~~~~~---~~~~~~~~~-------------~~~F~~~--------------~~~~G~~~fi~~~~L~~~-fl~~D~l~ 282 (298)
.|+||.. ...++..+. ...|+++ +.++||+.||++++|+.+ ||+||+|.
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlf 161 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLI 161 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEE
Confidence 9999931 111221110 1125443 348999999999999998 99999999
Q ss_pred EEEEEE
Q 047770 283 IELQFL 288 (298)
Q Consensus 283 i~~~v~ 288 (298)
|.++++
T Consensus 162 I~~~~~ 167 (167)
T cd03783 162 IFVDFE 167 (167)
T ss_pred EEEecC
Confidence 998863
No 32
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.78 E-value=1.1e-18 Score=135.36 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=98.5
Q ss_pred eeEEEeCCcccCCC-----CCcccceeee-CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE-EEEEEE
Q 047770 164 TRTWKIPKFSALDD-----NPRFSQAYTV-DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF-AEFDLL 234 (298)
Q Consensus 164 ~~~w~i~~fs~l~~-----~~~~S~~f~~-~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~-~~f~~~ 234 (298)
.++|+|+||+++.. ..++||.|.. .||+.++++||||.+.+ +.|||||++++++ +.++ +|++. -+++|.
T Consensus 3 ~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~G-e~D~~L~WPf~~~qit~~ 80 (167)
T cd03782 3 EHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSG-PNDDQLQWPCPWQQATMM 80 (167)
T ss_pred cEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEecc-CCCccccCCCcCCeEEEE
Confidence 78999999998652 4688887754 79999999999999875 6799999999999 7777 99998 899999
Q ss_pred EecCCC---CCcceee--eee--------ecc--ccc-----------------cccccccceeeccccccC-cccCCEE
Q 047770 235 LVDQKR---HSNSFKR--QYS--------KWF--SAQ-----------------CYVLGHRKFISLTDLYQS-DVVGDTL 281 (298)
Q Consensus 235 l~~~~~---~~~~~~~--~~~--------~~F--~~~-----------------~~~~G~~~fi~~~~L~~~-fl~~D~l 281 (298)
|+||.. ...|+.. +.. ..| .++ +.++|++.||++++|+.+ ||+||++
T Consensus 81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~i 160 (167)
T cd03782 81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDDV 160 (167)
T ss_pred EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCeE
Confidence 999931 1124333 111 134 332 568999999999999998 9999999
Q ss_pred EEEEEEE
Q 047770 282 IIELQFL 288 (298)
Q Consensus 282 ~i~~~v~ 288 (298)
.|-++++
T Consensus 161 fi~~~~e 167 (167)
T cd03782 161 IFLLTME 167 (167)
T ss_pred EEEEecC
Confidence 9988763
No 33
>smart00061 MATH meprin and TRAF homology.
Probab=99.74 E-value=4.5e-17 Score=118.28 Aligned_cols=94 Identities=28% Similarity=0.516 Sum_probs=79.4
Q ss_pred EEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEeCC
Q 047770 14 YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKD 93 (298)
Q Consensus 14 ~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~~~ 93 (298)
++|.|+||+.+. .++.++|++|.++|++|+|.+||+ .+|||+||.|.+....+..|++.|+|+++|+|++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999884 278999999999999999999998 4699999999887655558999999999999998
Q ss_pred CCeeEEEecCCeeeeCCCCCCcccccee
Q 047770 94 NEFLAHRAEGPIRRFDHNKHEWGFGKFL 121 (298)
Q Consensus 94 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi 121 (298)
++.... ...+.|.. ..+|||.+||
T Consensus 72 ~~~~~~---~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK---KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee---eeeEEEcC-CCccceeeEC
Confidence 874422 25688986 6889999886
No 34
>smart00061 MATH meprin and TRAF homology.
Probab=99.70 E-value=1e-16 Score=116.30 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=77.4
Q ss_pred eEEEeCCcccCC-CCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC-CCeEEEEEEEEEecCCCCC
Q 047770 165 RTWKIPKFSALD-DNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP-KRAVFAEFDLLLVDQKRHS 242 (298)
Q Consensus 165 ~~w~i~~fs~l~-~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~-~~~~~~~f~~~l~~~~~~~ 242 (298)
++|.|++|+.+. ++.+.|+.|.++|++|+|.+||+ ++|+|+||.|.+. ...+ +|++.|+|+|+|+|| ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~-~~~~~~w~v~a~~~~~l~~~--~~ 72 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKE-ECDSRKWSIEAEFTLKLVSQ--NG 72 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCC-cCCCCCeEEEEEEEEEEEeC--CC
Confidence 579999999985 47899999999999999999998 4599999999876 5554 899999999999999 44
Q ss_pred cceeeeeeecccccccccccccee
Q 047770 243 NSFKRQYSKWFSAQCYVLGHRKFI 266 (298)
Q Consensus 243 ~~~~~~~~~~F~~~~~~~G~~~fi 266 (298)
+...+...+.|.. ..+|||.+||
T Consensus 73 ~~~~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 73 KSLSKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CEEeeeeeEEEcC-CCccceeeEC
Confidence 4445556788876 6789999886
No 35
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.4e-14 Score=130.77 Aligned_cols=131 Identities=22% Similarity=0.445 Sum_probs=106.2
Q ss_pred ccCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC--C-CCCCeEEE
Q 047770 7 RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT--C-SDNWSVHV 83 (298)
Q Consensus 7 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~--~-~~~w~~~~ 83 (298)
-+.....++|+|++|+.+. ...+||+|.+||+.|+|.++|+|+.+ ...||||....... . ...|.|+|
T Consensus 34 Ee~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq----~~~sVyLe~~pqe~e~~~gk~~~cca 104 (1089)
T COG5077 34 EELLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ----CNVSVYLEYEPQELEETGGKYYDCCA 104 (1089)
T ss_pred HHHhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc----cccEEEEEeccchhhhhcCcchhhhh
Confidence 3455678999999999995 47899999999999999999999872 22999999875431 1 23499999
Q ss_pred EEEEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc-------cceeCCEEEEEEEEEEEecC
Q 047770 84 NYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH-------EYLANDTLVLGAEVFVIVST 147 (298)
Q Consensus 84 ~f~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~-------~~l~dd~l~i~~~i~i~~~~ 147 (298)
+|.|.|-|+..+..... ...-|+|+....+||+..|+.+..|. .|+.+|++.|++.|+|++.+
T Consensus 105 qFaf~Is~p~~pti~~i-N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 105 QFAFDISNPKYPTIEYI-NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred heeeecCCCCCCchhhh-hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 99999999877621111 12558999888999999999998886 68999999999999999885
No 36
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2e-13 Score=126.50 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=105.6
Q ss_pred ceeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCC-C--CCCCCeEEEEEEEEEecCC
Q 047770 163 TTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVL-D--PAPKRAVFAEFDLLLVDQK 239 (298)
Q Consensus 163 ~~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~-~--~~~~~~~~~~f~~~l~~~~ 239 (298)
..++|+|++++.+. +...||.|.+||+.|+|.++|.|+... -+||||.....+ + ....|.|+|+|.|.|-|+
T Consensus 39 ~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p- 113 (1089)
T COG5077 39 MSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDISNP- 113 (1089)
T ss_pred cccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecCCC-
Confidence 58999999999987 478999999999999999999998542 289999986541 1 111599999999999999
Q ss_pred CCCc-ceeeeeeeccccccccccccceeeccccccC------cccCCEEEEEEEEEEEEE-eee
Q 047770 240 RHSN-SFKRQYSKWFSAQCYVLGHRKFISLTDLYQS------DVVGDTLIIELQFLSVSA-VRL 295 (298)
Q Consensus 240 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~------fl~~D~l~i~~~v~i~~~-~~~ 295 (298)
+.+. ....+..|+|.....+|||.+|+.+..|..+ |+.+|++.|.+.|.|.+. ||.
T Consensus 114 ~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGV 177 (1089)
T COG5077 114 KYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGV 177 (1089)
T ss_pred CCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccc
Confidence 4432 4455677999888889999999999988763 999999999999999987 554
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.00 E-value=2e-10 Score=100.99 Aligned_cols=255 Identities=23% Similarity=0.342 Sum_probs=168.2
Q ss_pred EEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEeCC
Q 047770 14 YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKD 93 (298)
Q Consensus 14 ~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~~~ 93 (298)
+.|.+.+++... ..++|..|..+|..|++.+||.|+ ++|.|+.+.... +|.+.+.+.|.++|+.
T Consensus 6 ~~~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~ 69 (297)
T KOG1987|consen 6 FTWVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQK 69 (297)
T ss_pred cceeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCC
Confidence 338899988773 678999999999999999999864 789999988653 6999999999999998
Q ss_pred CC-e-eEEEecCCeeee--CCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCCceeeeEe--------ee
Q 047770 94 NE-F-LAHRAEGPIRRF--DHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTGRKECVSI--------LK 157 (298)
Q Consensus 94 ~~-~-~~~~~~~~~~~F--~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~~~~~~~~--------i~ 157 (298)
.. + ...+. ....| ......||+..+++...+. ||+.++.+.+-+...|++...+.+.... ..
T Consensus 70 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~ 147 (297)
T KOG1987|consen 70 SEKYLSTVEE--GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEE 147 (297)
T ss_pred Ccceeeeeee--eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchhcccccccccc
Confidence 76 3 44311 22333 3335789998888887776 9999988888887777777654432211 22
Q ss_pred cCCC----CceeEEEeCCcccCCC----CCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC---CCe
Q 047770 158 NPDG----ATTRTWKIPKFSALDD----NPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP---KRA 226 (298)
Q Consensus 158 ~p~~----~~~~~w~i~~fs~l~~----~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~---~~~ 226 (298)
.++. . .|+|.+.+++.... ....+..|..++..|++.++|.|.+..+...++.+|+.... .... .-.
T Consensus 148 ~~~~~~~~~-~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 225 (297)
T KOG1987|consen 148 KPEVLEALN-GFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASN-YDLKEAKSAL 225 (297)
T ss_pred chhhHhhhc-eEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhch-hHHHHHHHHH
Confidence 3444 5 99999999998763 26677889999999999999998766556678888876652 1111 222
Q ss_pred EEEEEEEEEecCCCCC--cce--eeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEE
Q 047770 227 VFAEFDLLLVDQKRHS--NSF--KRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSV 290 (298)
Q Consensus 227 ~~~~f~~~l~~~~~~~--~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~ 290 (298)
+.+......+|+ ... ++. .+............+ ..++.++.++... +++++++.+++...++
T Consensus 226 ~~~~~~~~~ld~-l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (297)
T KOG1987|consen 226 TYVIAAGFKLDW-LEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL 294 (297)
T ss_pred HHHHhccchHhH-HHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence 334444445666 332 121 111111111111112 3345555444333 6667777777765543
No 38
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.96 E-value=8.8e-05 Score=65.22 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=89.6
Q ss_pred eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCCCc
Q 047770 164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSN 243 (298)
Q Consensus 164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~ 243 (298)
++.|.+.+++... ..++|..+..++..|++.+||.|+ +++.|+.+... . +|.+.+++.+.+.|+ ...+
T Consensus 5 ~~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~---~~~~~~~~~l~v~n~-~~~~ 72 (297)
T KOG1987|consen 5 KFTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDS-P---GWERYAKLRLTVVNQ-KSEK 72 (297)
T ss_pred ccceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccC-C---CcceeEEEEEEEccC-CCcc
Confidence 4457888888765 667888899999999999999875 79999988764 2 599999999999999 4443
Q ss_pred c-eee-eeeeccccc--cccccccceeeccccccC---cccCCEEEEEEEEEEEEEee
Q 047770 244 S-FKR-QYSKWFSAQ--CYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSAVR 294 (298)
Q Consensus 244 ~-~~~-~~~~~F~~~--~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~~~ 294 (298)
. ... .....|... ...||+...++...+.+. |+.++.+++-+.+.|.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 73 YLSTVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred eeeeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 3 322 234444333 357999888888777664 88888888888877776544
No 39
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.1e-05 Score=80.27 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=101.5
Q ss_pred eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCCCc
Q 047770 164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHSN 243 (298)
Q Consensus 164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~ 243 (298)
..+|...+...+.. ...++.|..++.+|++.+.|++.. ...+++|+.+... ...+.|.+++++.+.++|...+..
T Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPS-QSLKSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred cccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccC-CCCcceEecchhhhccccCCCCch
Confidence 34455555555443 677889999999999999999873 4579999999876 444569999999999999412333
Q ss_pred ceeeeeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEEEee
Q 047770 244 SFKRQYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSAVR 294 (298)
Q Consensus 244 ~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~~~ 294 (298)
+..+...|.|.....+||+..|+.++++.++ |+.+|++.++++|.+..-++
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 156 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS 156 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence 5667788999888889999999999999887 99999999999999976554
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=4.5e-05 Score=77.90 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=97.9
Q ss_pred EEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEEEEeCC
Q 047770 14 YTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLFVLYKD 93 (298)
Q Consensus 14 ~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~l~~~~ 93 (298)
..|...+..... ....||.|..++.+|++.+.|+++. ...+++|+.+...... ..|.+.+++.+.+.|..
T Consensus 29 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~ 98 (1093)
T KOG1863|consen 29 TTIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTI 98 (1093)
T ss_pred ccccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccCC
Confidence 335555544443 3678999999999999999999874 5679999999988765 45999999999999943
Q ss_pred CCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCC
Q 047770 94 NEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTG 148 (298)
Q Consensus 94 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~ 148 (298)
++..... ....|.|.....+||+.+|+.+.++. +|+.+|++.+++.|.+.....
T Consensus 99 ~~~~~~~-~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 156 (1093)
T KOG1863|consen 99 DNLPDPE-KAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS 156 (1093)
T ss_pred CCchhhh-hhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence 3321111 13678999888999999999999887 999999999999999876654
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.17 E-value=0.00027 Score=64.27 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=70.9
Q ss_pred ccCCCcEEEEEECCcccccC---CCCcceEEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCe
Q 047770 7 RNSPPAHYTVELNSYSKLFR---PEKLEIFESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWS 80 (298)
Q Consensus 7 ~~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~ 80 (298)
...-.|+..|+|.+++..+. .+.+..++|++|.. .||..+.++|-||+. .+.+.++|+|+.++.+..+ ...|+
T Consensus 275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wp 353 (391)
T KOG0297|consen 275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWP 353 (391)
T ss_pred hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccC
Confidence 34457899999999965543 34467899999975 699999999999997 5667899999999998764 56799
Q ss_pred EEEEEEEEEEeC
Q 047770 81 VHVNYKLFVLYK 92 (298)
Q Consensus 81 ~~~~f~~~l~~~ 92 (298)
.+-+.++.+++|
T Consensus 354 f~~~v~~~l~dq 365 (391)
T KOG0297|consen 354 FRQKVTLMLLDQ 365 (391)
T ss_pred CCCceEEEEecc
Confidence 999999999999
No 42
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.65 E-value=0.0013 Score=59.82 Aligned_cols=75 Identities=28% Similarity=0.423 Sum_probs=65.5
Q ss_pred ceeEEEeCCcccCC-------CCCcccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEEEE
Q 047770 163 TTRTWKIPKFSALD-------DNPRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFAEF 231 (298)
Q Consensus 163 ~~~~w~i~~fs~l~-------~~~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~~f 231 (298)
....|+|.+++..+ ...+.|+.|.. .|++.+.++|-+|++.+.+.++|+|+...++ +.++ .|++.-+.
T Consensus 280 g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~g-e~d~~l~wpf~~~v 358 (391)
T KOG0297|consen 280 GTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRG-EYDALLPWPFRQKV 358 (391)
T ss_pred CEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeeccc-CcccccccCCCCce
Confidence 38899999996543 24677887765 7999999999999998889999999999999 7777 99999999
Q ss_pred EEEEecC
Q 047770 232 DLLLVDQ 238 (298)
Q Consensus 232 ~~~l~~~ 238 (298)
++.+++|
T Consensus 359 ~~~l~dq 365 (391)
T KOG0297|consen 359 TLMLLDQ 365 (391)
T ss_pred EEEEecc
Confidence 9999999
No 43
>PF06565 DUF1126: Repeat of unknown function (DUF1126); InterPro: IPR010554 This group contains several eukaryote specific repeats of around 35 residues in length. The function of this family is unknown.; PDB: 2Z14_A 2Z13_A.
Probab=20.16 E-value=69 Score=17.89 Aligned_cols=10 Identities=30% Similarity=0.252 Sum_probs=8.3
Q ss_pred cccCCEEEEE
Q 047770 275 DVVGDTLIIE 284 (298)
Q Consensus 275 fl~~D~l~i~ 284 (298)
||.||++.|.
T Consensus 5 ~L~DdTi~I~ 14 (33)
T PF06565_consen 5 YLADDTISIF 14 (33)
T ss_dssp ETTTTEEEEE
T ss_pred EccCCCEEEE
Confidence 7899998874
Done!