Query 047770
Match_columns 298
No_of_seqs 267 out of 1916
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 100.0 1.2E-29 4.1E-34 198.5 13.4 136 4-146 3-145 (145)
2 2foj_A Ubiquitin carboxyl-term 100.0 3.5E-29 1.2E-33 198.1 13.2 132 160-296 17-154 (155)
3 2foj_A Ubiquitin carboxyl-term 100.0 3E-28 1E-32 192.7 13.7 133 9-148 16-152 (155)
4 4ghu_A TNF receptor-associated 99.9 1.6E-28 5.6E-33 200.9 5.5 140 7-147 35-190 (198)
5 4gjh_A TNF receptor-associated 99.9 3.8E-28 1.3E-32 196.2 7.5 139 6-145 18-174 (178)
6 1lb6_A TNF receptor-associated 99.9 1.5E-27 5.1E-32 189.6 10.7 138 9-146 2-158 (160)
7 3hqi_A Speckle-type POZ protei 99.9 7.2E-27 2.5E-31 205.6 12.9 175 8-194 3-188 (312)
8 3ivv_A Speckle-type POZ protei 99.9 1.1E-26 3.6E-31 181.7 11.5 122 164-291 12-144 (145)
9 1ca9_A TRAF2, protein (TNF rec 99.9 4.1E-27 1.4E-31 192.5 6.5 135 9-144 40-190 (192)
10 2gkw_A TNF receptor-associated 99.9 2.3E-27 8E-32 193.7 4.9 135 9-144 37-187 (192)
11 1d00_A Tumor necrosis factor r 99.9 3.7E-27 1.3E-31 188.9 6.0 136 8-144 15-166 (168)
12 4gjh_A TNF receptor-associated 99.9 1.5E-26 5.1E-31 186.8 7.4 130 160-292 22-175 (178)
13 1ca9_A TRAF2, protein (TNF rec 99.9 2E-26 7E-31 188.4 5.4 129 159-290 40-190 (192)
14 1flk_A TNF receptor associated 99.9 1.1E-26 3.8E-31 194.5 3.8 137 8-145 72-224 (228)
15 4ghu_A TNF receptor-associated 99.9 5.8E-26 2E-30 185.8 7.7 130 160-292 38-189 (198)
16 1lb6_A TNF receptor-associated 99.9 1.1E-25 3.8E-30 178.8 8.6 127 164-292 6-158 (160)
17 2gkw_A TNF receptor-associated 99.9 5E-26 1.7E-30 185.8 6.2 128 161-291 39-188 (192)
18 1d00_A Tumor necrosis factor r 99.9 6.8E-26 2.3E-30 181.6 6.8 128 160-290 17-166 (168)
19 1flk_A TNF receptor associated 99.9 9.3E-25 3.2E-29 182.8 5.9 130 160-292 74-225 (228)
20 2f1z_A Ubiquitin carboxyl-term 99.9 4.1E-23 1.4E-27 193.7 11.3 133 7-146 26-162 (522)
21 3hqi_A Speckle-type POZ protei 99.9 1.1E-22 3.7E-27 178.9 12.9 123 164-292 8-141 (312)
22 2f1z_A Ubiquitin carboxyl-term 99.9 1.6E-22 5.4E-27 189.7 11.9 129 164-295 32-165 (522)
23 4gwm_A Meprin A subunit beta; 99.5 1.2E-12 4.1E-17 122.2 19.7 126 158-290 402-566 (592)
24 4gwm_A Meprin A subunit beta; 99.5 8.3E-14 2.8E-18 130.0 10.9 138 6-150 400-572 (592)
25 3v0r_A Major allergen ALT A 1; 25.2 11 0.00038 27.4 -0.7 32 7-40 7-38 (133)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=1.2e-29 Score=198.52 Aligned_cols=136 Identities=29% Similarity=0.450 Sum_probs=114.6
Q ss_pred cccccCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCe
Q 047770 4 REIRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWS 80 (298)
Q Consensus 4 ~~~~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~ 80 (298)
..|.++..++|+|+|+|||.+++ +.++.++||+|.+||| +|+|++||+|+. .++.+||||||.|.+. +.|+
T Consensus 3 ~~m~~~~~~~~~w~I~~fs~~~~-~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~ 76 (145)
T 3ivv_A 3 GGSGKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSE 76 (145)
T ss_dssp --CCCCCEEEEEEEESSGGGCCC-CTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSE
T ss_pred CCCCcEEEEEEEEEEcCchHHhh-cCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCc
Confidence 56788999999999999999873 5578999999999996 999999999987 3567899999999876 3599
Q ss_pred EEEEEEEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeecccc--c--cceeCCEEEEEEEEEEEec
Q 047770 81 VHVNYKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTL--H--EYLANDTLVLGAEVFVIVS 146 (298)
Q Consensus 81 ~~~~f~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l--~--~~l~dd~l~i~~~i~i~~~ 146 (298)
+.|+|+|+|+||+++..........++|.. ..+|||.+||++++| . +||+||+|+|+|+|+|+++
T Consensus 77 v~a~f~l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 77 VRAKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEEEEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEEEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999999999887433222235688974 589999999999999 3 9999999999999999863
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=3.5e-29 Score=198.09 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=110.4
Q ss_pred CCCceeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCC-CCCCeEEEEEEeccCCCCCC-CCeEEEEEEEEEec
Q 047770 160 DGATTRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAA-GKGEFLALHLMLVDVLDPAP-KRAVFAEFDLLLVD 237 (298)
Q Consensus 160 ~~~~~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~-~~~~~lsv~L~~~~~~~~~~-~~~~~~~f~~~l~~ 237 (298)
+.+ +|+|+|+|||.++ +.++|+.|.++|++|+|++||+|+.. +.++||||||+|... ..+ .|++.|+|+|+|+|
T Consensus 17 ~~~-~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~--~~~~~w~v~a~~~l~l~~ 92 (155)
T 2foj_A 17 SEA-TFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE--SDSTSWSCHAQAVLKIIN 92 (155)
T ss_dssp SEE-EEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT--CCCSSCEEEEEEEEEECC
T ss_pred CCc-EEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC--CCCCCCEEEEEEEEEEEc
Confidence 445 9999999999995 78999999999999999999999764 357899999999643 334 79999999999999
Q ss_pred CCCCCc-ceeeeeeeccccccccccccceeecccccc---CcccCCEEEEEEEEEEEEEeeee
Q 047770 238 QKRHSN-SFKRQYSKWFSAQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFLSVSAVRLL 296 (298)
Q Consensus 238 ~~~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~i~~~~~~~ 296 (298)
| .+.. +..+...+.|.....+|||++||+|++|++ .||+||+|+|+|+|+|.+++|++
T Consensus 93 ~-~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 93 Y-RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp S-SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred C-CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 9 4443 566677788987667899999999999963 39999999999999999999974
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=3e-28 Score=192.74 Aligned_cols=133 Identities=17% Similarity=0.345 Sum_probs=108.4
Q ss_pred CCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEEEE
Q 047770 9 SPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYKLF 88 (298)
Q Consensus 9 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~~~ 88 (298)
...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+..++..+||||||.|... ..+..|++.|+|+|.
T Consensus 16 ~~~~~~~w~I~nfS~~~-----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~ 89 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK 89 (155)
T ss_dssp CSEEEEEEEESSGGGCC-----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC-----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEE
Confidence 56799999999999984 689999999999999999999997621357899999999654 346679999999999
Q ss_pred EEeCCCCeeEEEecCCeeeeCCCCCCccccceeecccc---c-cceeCCEEEEEEEEEEEecCC
Q 047770 89 VLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTL---H-EYLANDTLVLGAEVFVIVSTG 148 (298)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l---~-~~l~dd~l~i~~~i~i~~~~~ 148 (298)
|+||+++...... ...+.|.....+|||.+||++++| . +||+||+|+|+|+|+|.++++
T Consensus 90 l~~~~~~~~~~~~-~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG 152 (155)
T 2foj_A 90 IINYRDDEKSFSR-RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 152 (155)
T ss_dssp ECCSSCGGGCEEE-EEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBS
T ss_pred EEcCCCCcceEEe-ccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccc
Confidence 9999887322111 256789766789999999999999 4 999999999999999966554
No 4
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=1.6e-28 Score=200.86 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=112.7
Q ss_pred ccCCCcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCe
Q 047770 7 RNSPPAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWS 80 (298)
Q Consensus 7 ~~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~ 80 (298)
..+..|+|.|+|+|||.++. .+.++.++|++|.+| ||+|+|++||||+. .+..+||||||.+.+++.+ ...|+
T Consensus 35 ~~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp 113 (198)
T 4ghu_A 35 TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWP 113 (198)
T ss_dssp TCCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSS
T ss_pred ccccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCce
Confidence 45778999999999999875 456789999999999 99999999999987 4567899999999876543 45799
Q ss_pred EEEEEEEEEEeCCCCe-eEEE---ecCCeeee----CCCCCCccccceeeccccc--cceeCCEEEEEEEEEEEecC
Q 047770 81 VHVNYKLFVLYKDNEF-LAHR---AEGPIRRF----DHNKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIVST 147 (298)
Q Consensus 81 ~~~~f~~~l~~~~~~~-~~~~---~~~~~~~F----~~~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~~~~ 147 (298)
+.|+|+|.|+||.++. .... .......| .....+|||.+||++++|+ +||+||+|+|+|+|+++..+
T Consensus 114 ~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 114 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccCC
Confidence 9999999999998652 2111 00111223 3345689999999999998 99999999999999887654
No 5
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=3.8e-28 Score=196.17 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=112.1
Q ss_pred cccCCCcEEEEEECCcccccC---CCCcceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCC
Q 047770 6 IRNSPPAHYTVELNSYSKLFR---PEKLEIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNW 79 (298)
Q Consensus 6 ~~~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w 79 (298)
...+..|+|+|+|+|||.++. .+.+..++|++|.+| ||+|+|++||+|+. .+..+||||||.|.++.. ....|
T Consensus 18 ~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W 96 (178)
T 4gjh_A 18 EGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQW 96 (178)
T ss_dssp HHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCS
T ss_pred cCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCC
Confidence 356889999999999999874 344558999999999 99999999999987 445789999999987653 24579
Q ss_pred eEEEEEEEEEEeCCCCee-EEE---ecCCeeeeCC----CCCCccccceeeccccc----cceeCCEEEEEEEEEEEe
Q 047770 80 SVHVNYKLFVLYKDNEFL-AHR---AEGPIRRFDH----NKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIV 145 (298)
Q Consensus 80 ~~~~~f~~~l~~~~~~~~-~~~---~~~~~~~F~~----~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~ 145 (298)
++.|+|+|+|+||.++.. ... .+...+.|+. ...+|||.+||++++|+ +||+||+|+|+|+|.|.+
T Consensus 97 ~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 97 PFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp SCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred ceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 999999999999987622 111 1123467763 34689999999999997 899999999999997643
No 6
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.95 E-value=1.5e-27 Score=189.63 Aligned_cols=138 Identities=19% Similarity=0.315 Sum_probs=106.7
Q ss_pred CCCcEEEEEECCcccccC-CCCcc--eEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEE
Q 047770 9 SPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVH 82 (298)
Q Consensus 9 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~ 82 (298)
+..|+|+|+|+|||.++. .+.|+ .++|++|.+| ||+|+|++||||++.+...+||||||.++++..+ ..+|+++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 467999999999999864 34456 8999999999 9999999999998622247899999999876543 4579999
Q ss_pred EEEEEEEEeCCCCee--E----EEecCCeeeeCC-----CCCCccccceeeccccc--cceeCCEEEEEEEEEEEec
Q 047770 83 VNYKLFVLYKDNEFL--A----HRAEGPIRRFDH-----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIVS 146 (298)
Q Consensus 83 ~~f~~~l~~~~~~~~--~----~~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~~~ 146 (298)
|+|+|.|+||.++.. . .........|.. ...+|||.+||++++|+ +||+||+|+|+|+|+|+.+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEeec
Confidence 999999999986521 1 111112234542 12379999999999998 8999999999999998764
No 7
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=7.2e-27 Score=205.60 Aligned_cols=175 Identities=24% Similarity=0.371 Sum_probs=132.8
Q ss_pred cCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCe---eEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEE
Q 047770 8 NSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNY---KWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVN 84 (298)
Q Consensus 8 ~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~---~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~ 84 (298)
++.+++|+|+|.|||.++ .+.++.++||+|.+||+ +|+|.+||+|++ +++.+|||+||.|.+++ .|++.|+
T Consensus 3 ~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~ 76 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAK 76 (312)
T ss_dssp EEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEE
T ss_pred ceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEE
Confidence 456789999999999997 55688999999999995 999999999987 45678999999998754 5999999
Q ss_pred EEEEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEecCCcee---eeEeee
Q 047770 85 YKLFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVSTGRKE---CVSILK 157 (298)
Q Consensus 85 f~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~~~~~~---~~~~i~ 157 (298)
|+|+|+||+++..........++|.. ..+|||.+||++++|+ +||+||+|+|+|+|+|++...+.+ ....+.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~ 155 (312)
T 3hqi_A 77 FKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK 155 (312)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCC
T ss_pred EEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccC
Confidence 99999999987433322236688985 4689999999999995 799999999999999997653221 123355
Q ss_pred cCCCCceeEEEeCCcccCC-CCCcccceeeeCCeeEEE
Q 047770 158 NPDGATTRTWKIPKFSALD-DNPRFSQAYTVDERKWKL 194 (298)
Q Consensus 158 ~p~~~~~~~w~i~~fs~l~-~~~~~S~~f~~~g~~w~i 194 (298)
+|++. ...++..+. .+...+.++.++|..+..
T Consensus 156 ~p~~~-----l~~~l~~l~~~~~~~Dv~l~v~~~~f~~ 188 (312)
T 3hqi_A 156 VPECR-----LADELGGLWENSRFTDCCLCVAGQEFQA 188 (312)
T ss_dssp CCCCC-----HHHHHHHHHHTTCSCCEEEEETTEEEEE
T ss_pred CCCch-----HHHHHHHHHhCCCCCceEEEECCEEEeH
Confidence 66655 445555544 355667788888876543
No 8
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.94 E-value=1.1e-26 Score=181.73 Aligned_cols=122 Identities=25% Similarity=0.384 Sum_probs=103.0
Q ss_pred eeEEEeCCcccCC---CCCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770 164 TRTWKIPKFSALD---DNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237 (298)
Q Consensus 164 ~~~w~i~~fs~l~---~~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~ 237 (298)
+|+|+|.|||.++ ++.+.|+.|.++|+ +|+|++||+|+..+.++|+|+||+|.+. +.|++.|+|+|+|+|
T Consensus 12 ~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l~lln 87 (145)
T 3ivv_A 12 SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSILN 87 (145)
T ss_dssp EEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEEEEEC
T ss_pred EEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEEEEEe
Confidence 8999999999987 36899999999986 9999999999876667899999999864 369999999999999
Q ss_pred CCCCCcce--eeeeeeccccccccccccceeecccccc--C-cccCCEEEEEEEEEEEE
Q 047770 238 QKRHSNSF--KRQYSKWFSAQCYVLGHRKFISLTDLYQ--S-DVVGDTLIIELQFLSVS 291 (298)
Q Consensus 238 ~~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~--~-fl~~D~l~i~~~v~i~~ 291 (298)
| .+.++. .....+.|.. ..+|||++||++++|++ . ||+||+|+|+|+|+|++
T Consensus 88 q-~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 88 A-KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp T-TSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred c-CCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 9 444332 2234577864 56899999999999953 3 99999999999999975
No 9
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.93 E-value=4.1e-27 Score=192.52 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=108.7
Q ss_pred CCCcEEEEEECCcccccC-CCCcc--eEEcCcEEe--CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeEE
Q 047770 9 SPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEA--GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSVH 82 (298)
Q Consensus 9 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~--~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~~ 82 (298)
...++|+|+|+|||.++. .+.|+ .++||+|.+ |||+|+|++||+|++ .+..+||||||.+.++..++ ..|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence 678999999999999874 23344 699999999 999999999999987 34678999999998876544 689999
Q ss_pred EEEEEEEEeCCCCeeEEEe---cCCeeeeC----CCCCCccccceeeccccc---cceeCCEEEEEEEEEEE
Q 047770 83 VNYKLFVLYKDNEFLAHRA---EGPIRRFD----HNKHEWGFGKFLSLDTLH---EYLANDTLVLGAEVFVI 144 (298)
Q Consensus 83 ~~f~~~l~~~~~~~~~~~~---~~~~~~F~----~~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i~i~ 144 (298)
|+|+|.|+||+++...... +.....|. ....+|||.+||++++|+ +||+||+|+|+|+|+|.
T Consensus 119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEec
Confidence 9999999999887221111 11223464 124689999999999996 89999999999999874
No 10
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=2.3e-27 Score=193.67 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=108.9
Q ss_pred CCCcEEEEEECCcccccC-CCCcc--eEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeEE
Q 047770 9 SPPAHYTVELNSYSKLFR-PEKLE--IFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSVH 82 (298)
Q Consensus 9 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~~ 82 (298)
...++|.|+|.|||.++. .+.|+ .++|++|.+| ||+|+|++||||++ .+..+||||||.++++..+ ..+|++.
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~ 115 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 115 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEE
Confidence 478999999999999873 33455 6999999999 99999999999987 3567899999999876543 4579999
Q ss_pred EEEEEEEEeCCCCee-EE---EecCCeeeeCC----CCCCccccceeeccccc--cceeCCEEEEEEEEEEE
Q 047770 83 VNYKLFVLYKDNEFL-AH---RAEGPIRRFDH----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVI 144 (298)
Q Consensus 83 ~~f~~~l~~~~~~~~-~~---~~~~~~~~F~~----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~ 144 (298)
|+|+|+|+||.++.. .. ......+.|.. .+.+|||.+||++++|+ +||+||+|+|+|+|.+.
T Consensus 116 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~ 187 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTS 187 (192)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcC
Confidence 999999999987722 11 11112356753 23689999999999998 99999999999999764
No 11
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=3.7e-27 Score=188.95 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=108.4
Q ss_pred cCCCcEEEEEECCcccccCC-CCcc--eEEcCcEE--eCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCC-CCCeE
Q 047770 8 NSPPAHYTVELNSYSKLFRP-EKLE--IFESGLFE--AGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCS-DNWSV 81 (298)
Q Consensus 8 ~~~~~~~~w~I~nfs~~~~~-~~~~--~~~S~~f~--~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~-~~w~~ 81 (298)
....++|+|+|+|||.++.. ..++ .++||+|. +|||+|+|++||+|+. .+..+||||||.+.++..++ .+|++
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~ 93 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPF 93 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCce
Confidence 45789999999999998742 3344 49999996 7899999999999987 34578999999998865543 68999
Q ss_pred EEEEEEEEEeCCCCeeEEEe---cCCeeeeCC----CCCCccccceeeccccc---cceeCCEEEEEEEEEEE
Q 047770 82 HVNYKLFVLYKDNEFLAHRA---EGPIRRFDH----NKHEWGFGKFLSLDTLH---EYLANDTLVLGAEVFVI 144 (298)
Q Consensus 82 ~~~f~~~l~~~~~~~~~~~~---~~~~~~F~~----~~~~~G~~~fi~~~~l~---~~l~dd~l~i~~~i~i~ 144 (298)
.|+|+|+|+||++....... +...+.|.. ...+|||.+||++++|+ +||+||+|+|+|+|+|.
T Consensus 94 ~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 94 NQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEec
Confidence 99999999999886322111 011235642 35789999999999998 79999999999999763
No 12
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=186.77 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=106.8
Q ss_pred CCCceeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770 160 DGATTRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF 228 (298)
Q Consensus 160 ~~~~~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~ 228 (298)
..+ +|+|+|.|||.+++ ..+.|+.|.++ |++|+|++||+|+..+.++|+|+||+|.++ +.+. .|++.
T Consensus 22 ~~g-~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-~~d~~l~W~v~ 99 (178)
T 4gjh_A 22 YSG-KLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRG-EFDSLLQWPFR 99 (178)
T ss_dssp SSS-EEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCC-TTGGGSCSSCC
T ss_pred cce-EEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecC-CCCcccCCceE
Confidence 355 99999999998752 27999999999 999999999999877667899999999876 4432 79999
Q ss_pred EEEEEEEecCCCCC-cceeee-----eeecccc----ccccccccceeecccccc--C-cccCCEEEEEEEEEEEEE
Q 047770 229 AEFDLLLVDQKRHS-NSFKRQ-----YSKWFSA----QCYVLGHRKFISLTDLYQ--S-DVVGDTLIIELQFLSVSA 292 (298)
Q Consensus 229 ~~f~~~l~~~~~~~-~~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~--~-fl~~D~l~i~~~v~i~~~ 292 (298)
++|+|.|+|| .+. .+...+ ..+.|.. .+.+|||++||++++|++ . ||+||+|+|+|+|+|.++
T Consensus 100 a~~~l~Lldq-~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 100 QRVTLMLLDQ-SGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CEEEEEECCT-TSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcC-CCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 9999999999 433 344332 3467763 346899999999999997 3 999999999999988654
No 13
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.92 E-value=2e-26 Score=188.39 Aligned_cols=129 Identities=20% Similarity=0.311 Sum_probs=105.8
Q ss_pred CCCCceeEEEeCCcccCCC-----C--Ccccceeee--CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeE
Q 047770 159 PDGATTRTWKIPKFSALDD-----N--PRFSQAYTV--DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAV 227 (298)
Q Consensus 159 p~~~~~~~w~i~~fs~l~~-----~--~~~S~~f~~--~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~ 227 (298)
+..+ +|+|+|.|||.+++ + .++|+.|.+ +|++|+|++||+|++.+.++|+|+||+|.++ +.++ .|++
T Consensus 40 ~~~g-~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-~~~~~~~W~~ 117 (192)
T 1ca9_A 40 TYDG-VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPF 117 (192)
T ss_dssp CSSS-EEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSC
T ss_pred ccCc-eEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccC-CCCCcCCCce
Confidence 4456 99999999999763 1 599999999 9999999999999876667899999999887 5543 8999
Q ss_pred EEEEEEEEecCCCCCcceeeeee-----ecccc----ccccccccceeeccccc-cC-cccCCEEEEEEEEEEE
Q 047770 228 FAEFDLLLVDQKRHSNSFKRQYS-----KWFSA----QCYVLGHRKFISLTDLY-QS-DVVGDTLIIELQFLSV 290 (298)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~~~~-----~~F~~----~~~~~G~~~fi~~~~L~-~~-fl~~D~l~i~~~v~i~ 290 (298)
.++|+|.|+|| .+.++...... ..|.. .+.+|||++||++++|+ +. ||+||+|+|+|+|+|.
T Consensus 118 ~a~~~l~lldq-~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 118 NQKVTLMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp CCCEEEEECCT-TSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCT
T ss_pred EEEEEEEEECC-CCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEec
Confidence 99999999999 45445433322 34642 34589999999999998 44 9999999999999885
No 14
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=1.1e-26 Score=194.51 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=109.7
Q ss_pred cCCCcEEEEEECCcccccC-CCCc--ceEEcCcEEeC--CeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCC-CCCCeE
Q 047770 8 NSPPAHYTVELNSYSKLFR-PEKL--EIFESGLFEAG--NYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTC-SDNWSV 81 (298)
Q Consensus 8 ~~~~~~~~w~I~nfs~~~~-~~~~--~~~~S~~f~~~--g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~-~~~w~~ 81 (298)
.+..|+|.|+|.|||.++. .+.| ..++|++|.+| ||+|+|++||||++ .+..+||||||.++++..+ ...|++
T Consensus 72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~ 150 (228)
T 1flk_A 72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 150 (228)
T ss_dssp CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSC
T ss_pred cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcE
Confidence 3578999999999999864 2233 48999999999 99999999999987 4567899999999876553 457999
Q ss_pred EEEEEEEEEeCCCCee-EEE---ecCCeeeeCC----CCCCccccceeeccccc--cceeCCEEEEEEEEEEEe
Q 047770 82 HVNYKLFVLYKDNEFL-AHR---AEGPIRRFDH----NKHEWGFGKFLSLDTLH--EYLANDTLVLGAEVFVIV 145 (298)
Q Consensus 82 ~~~f~~~l~~~~~~~~-~~~---~~~~~~~F~~----~~~~~G~~~fi~~~~l~--~~l~dd~l~i~~~i~i~~ 145 (298)
.|+|+|+|+||.+... ... .+...+.|.. .+.+|||.+||++++|+ +||+||+|+|+|+|.+.+
T Consensus 151 ~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 151 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEccc
Confidence 9999999999987732 211 1112345642 24689999999999998 999999999999998754
No 15
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.92 E-value=5.8e-26 Score=185.75 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=106.6
Q ss_pred CCCceeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770 160 DGATTRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF 228 (298)
Q Consensus 160 ~~~~~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~ 228 (298)
..+ .|+|+|.|||.+++ +.+.|+.|.++ |++|+|++||+|++.+.++|||+||++.++ +.++ .|++.
T Consensus 38 ~~g-~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g-~~D~~l~wp~~ 115 (198)
T 4ghu_A 38 YNG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFK 115 (198)
T ss_dssp SSS-EEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCC
T ss_pred ccc-EEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCC-ccCCCCCceEE
Confidence 355 99999999998753 57999999999 999999999999877678899999999887 5543 89999
Q ss_pred EEEEEEEecCCCCC-cceeeee-----eecc----ccccccccccceeeccccccC-cccCCEEEEEEEEEEEEE
Q 047770 229 AEFDLLLVDQKRHS-NSFKRQY-----SKWF----SAQCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVSA 292 (298)
Q Consensus 229 ~~f~~~l~~~~~~~-~~~~~~~-----~~~F----~~~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~~ 292 (298)
++|+|.|+|| .+. .+...+. ...| ...+.+|||++||++++|++. ||+||+|+|+|+|+|+..
T Consensus 116 a~~~l~Lldq-~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 116 QKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp CCEEEEECCC-STTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcC-CCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEeccC
Confidence 9999999999 433 3443322 1234 334568999999999999977 999999999999998654
No 16
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.92 E-value=1.1e-25 Score=178.79 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=100.3
Q ss_pred eeEEEeCCcccCCC-----C--CcccceeeeC--CeeEEEEEeeCCCCCC-CCCeEEEEEEeccCCCCCC--CCeEEEEE
Q 047770 164 TRTWKIPKFSALDD-----N--PRFSQAYTVD--ERKWKLRLYPMGTAAG-KGEFLALHLMLVDVLDPAP--KRAVFAEF 231 (298)
Q Consensus 164 ~~~w~i~~fs~l~~-----~--~~~S~~f~~~--g~~w~i~~yp~G~~~~-~~~~lsv~L~~~~~~~~~~--~~~~~~~f 231 (298)
+|+|+|+|||.+++ + .+.|+.|.++ |++|+|++||+|++.+ .++|+|+||++.++ +.++ +|++.++|
T Consensus 6 ~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~-~~d~~l~wp~~a~~ 84 (160)
T 1lb6_A 6 IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQG-EYDSHLPWPFQGTI 84 (160)
T ss_dssp EEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECC-TTGGGSCSSCCSEE
T ss_pred EEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeec-CCCccCCCceeeeE
Confidence 89999999998752 3 7899999999 9999999999998654 37899999999876 5543 79999999
Q ss_pred EEEEecCCCCCc---ceeeee-----eeccccc-----cccccccceeeccccccC-cccCCEEEEEEEEEEEEE
Q 047770 232 DLLLVDQKRHSN---SFKRQY-----SKWFSAQ-----CYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVSA 292 (298)
Q Consensus 232 ~~~l~~~~~~~~---~~~~~~-----~~~F~~~-----~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~~ 292 (298)
+|.|+|| .+.. +..... ...|... ..+|||++||++++|++. ||+||+|+|+|+|+|+..
T Consensus 85 ~l~lldq-~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 85 RLTILDQ-SEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEECCC-SCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC---
T ss_pred EEEEEcC-CCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEeec
Confidence 9999999 4321 222221 1235431 237999999999999977 999999999999999754
No 17
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.92 E-value=5e-26 Score=185.78 Aligned_cols=128 Identities=21% Similarity=0.322 Sum_probs=105.9
Q ss_pred CCceeEEEeCCcccCC-----CC--CcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEEE
Q 047770 161 GATTRTWKIPKFSALD-----DN--PRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVFA 229 (298)
Q Consensus 161 ~~~~~~w~i~~fs~l~-----~~--~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~~ 229 (298)
.+ +|+|+|.|||.++ ++ .+.|+.|.++ |++|+|++||+|++.+.++|+|+||++.++ +.++ .|++.+
T Consensus 39 ~g-~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~-~~d~~l~wp~~a 116 (192)
T 2gkw_A 39 NG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFKQ 116 (192)
T ss_dssp SS-EEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCCC
T ss_pred Cc-EEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecC-CCCccCCCcEEE
Confidence 45 9999999999976 22 5999999999 999999999999876678899999999877 5544 899999
Q ss_pred EEEEEEecCCCCC-cceeeeee-----eccccc----cccccccceeeccccccC-cccCCEEEEEEEEEEEE
Q 047770 230 EFDLLLVDQKRHS-NSFKRQYS-----KWFSAQ----CYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVS 291 (298)
Q Consensus 230 ~f~~~l~~~~~~~-~~~~~~~~-----~~F~~~----~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~ 291 (298)
+|+|.|+|| .+. +++..... +.|..+ +.+|||++||++++|++. ||+||+|+|+|+|+|.+
T Consensus 117 ~~~l~lldq-~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 117 KVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CEEEEECCC-STTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECC-CCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcCC
Confidence 999999999 443 34433322 567543 367999999999999887 99999999999998743
No 18
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.92 E-value=6.8e-26 Score=181.56 Aligned_cols=128 Identities=21% Similarity=0.307 Sum_probs=104.9
Q ss_pred CCCceeEEEeCCcccCCC-----C--Ccccceee--eCCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770 160 DGATTRTWKIPKFSALDD-----N--PRFSQAYT--VDERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF 228 (298)
Q Consensus 160 ~~~~~~~w~i~~fs~l~~-----~--~~~S~~f~--~~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~ 228 (298)
..+ +|+|+|.|||.+++ + .+.|+.|. ++|++|+|++||+|+..+.++|+|+||+|.++ +.++ +|++.
T Consensus 17 ~~g-~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-~~~~~~~w~~~ 94 (168)
T 1d00_A 17 YDG-VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKG-PNDALLRWPFN 94 (168)
T ss_dssp SSS-EEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECC-TTGGGSCSSCC
T ss_pred cCC-EEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecC-CCCccCCCceE
Confidence 345 99999999999762 2 38999995 79999999999999876667899999999886 5553 89999
Q ss_pred EEEEEEEecCCCCCcceeeee-----eecccc----ccccccccceeeccccccC--cccCCEEEEEEEEEEE
Q 047770 229 AEFDLLLVDQKRHSNSFKRQY-----SKWFSA----QCYVLGHRKFISLTDLYQS--DVVGDTLIIELQFLSV 290 (298)
Q Consensus 229 ~~f~~~l~~~~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~--fl~~D~l~i~~~v~i~ 290 (298)
++|+|+|+|| .+.++..... .+.|.. .+.+|||++||++++|+++ ||+||+|+|+|+|+|.
T Consensus 95 ~~~~l~ll~q-~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 95 QKVTLMLLDQ-NNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCEEEEECCT-TSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEECC-CCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEec
Confidence 9999999999 4544444332 235753 3468999999999999984 9999999999999874
No 19
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.90 E-value=9.3e-25 Score=182.83 Aligned_cols=130 Identities=22% Similarity=0.303 Sum_probs=106.7
Q ss_pred CCCceeEEEeCCcccCCC-------CCcccceeeeC--CeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeEE
Q 047770 160 DGATTRTWKIPKFSALDD-------NPRFSQAYTVD--ERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAVF 228 (298)
Q Consensus 160 ~~~~~~~w~i~~fs~l~~-------~~~~S~~f~~~--g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~~ 228 (298)
..+ +|+|+|.|||.++. ..+.|+.|.++ |++|+|++||+|++.+.++|+|+||++.++ +.++ .|++.
T Consensus 74 ~~g-~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~-~~d~~l~Wp~~ 151 (228)
T 1flk_A 74 YNG-VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRG-EYDALLPWPFK 151 (228)
T ss_dssp SSS-EEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCC-TTTTSSCSSCC
T ss_pred cCc-EEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecC-CccccCCCcEE
Confidence 355 99999999998752 27999999999 999999999999877678999999999877 5544 89999
Q ss_pred EEEEEEEecCCCCCc-ceeeee-----eecccc----ccccccccceeeccccccC-cccCCEEEEEEEEEEEEE
Q 047770 229 AEFDLLLVDQKRHSN-SFKRQY-----SKWFSA----QCYVLGHRKFISLTDLYQS-DVVGDTLIIELQFLSVSA 292 (298)
Q Consensus 229 ~~f~~~l~~~~~~~~-~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~-fl~~D~l~i~~~v~i~~~ 292 (298)
++|+|.|+|| .+.+ +..... .+.|.. .+.+|||++||++++|++. ||+||+|+|+|+|+|.+.
T Consensus 152 a~~~l~lldq-~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 152 QKVTLMLMDQ-GSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CCEEEEECCC-SSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEEcC-CCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEcccc
Confidence 9999999999 4433 443321 235652 3458999999999999987 999999999999988653
No 20
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=193.67 Aligned_cols=133 Identities=17% Similarity=0.318 Sum_probs=106.9
Q ss_pred ccCCCcEEEEEECCcccccCCCCcceEEcCcEEeCCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCCCCCCCeEEEEEE
Q 047770 7 RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEAGNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNTCSDNWSVHVNYK 86 (298)
Q Consensus 7 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~~~~~w~~~~~f~ 86 (298)
.....++|+|+|+|||.++ +.++|++|.+||++|+|.+||+|+..+.+.+||||||.+.+. ..+..|.+.|+|+
T Consensus 26 ~~~~~~~~~w~I~nfS~~~-----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~ 99 (522)
T 2f1z_A 26 SWRSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAV 99 (522)
T ss_dssp CCCSEEEEEEEESSCTTCC-----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEE
T ss_pred cccCCcEEEEEECChhhcC-----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEE
Confidence 3466889999999999986 289999999999999999999997533367899999999877 3577899999999
Q ss_pred EEEEeCCCCeeEEEecCCeeeeCCCCCCccccceeeccccc----cceeCCEEEEEEEEEEEec
Q 047770 87 LFVLYKDNEFLAHRAEGPIRRFDHNKHEWGFGKFLSLDTLH----EYLANDTLVLGAEVFVIVS 146 (298)
Q Consensus 87 ~~l~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~----~~l~dd~l~i~~~i~i~~~ 146 (298)
|.|+|+.++...... ...++|.....+|||.+||++++|. +||+||+++|+|+|++..+
T Consensus 100 l~l~n~~~~~~~~~~-~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p 162 (522)
T 2f1z_A 100 LKIINYRDDEKSFSR-RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 162 (522)
T ss_dssp EEECCTTCGGGCEEE-ECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred EEEEcCCCCccceec-cceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccc
Confidence 999999876322221 2568897666889999999999993 9999999999999999644
No 21
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.88 E-value=1.1e-22 Score=178.91 Aligned_cols=123 Identities=25% Similarity=0.367 Sum_probs=99.9
Q ss_pred eeEEEeCCcccCC---CCCcccceeeeCCe---eEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEec
Q 047770 164 TRTWKIPKFSALD---DNPRFSQAYTVDER---KWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVD 237 (298)
Q Consensus 164 ~~~w~i~~fs~l~---~~~~~S~~f~~~g~---~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~ 237 (298)
+|+|+|+|||.++ ++.+.|+.|.+||+ +|+|++||+|.+...++|+|+||+|... +.|++.++|+|+|+|
T Consensus 8 ~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l~~ 83 (312)
T 3hqi_A 8 SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSILN 83 (312)
T ss_dssp EEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEEEC
T ss_pred EEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEEEe
Confidence 8999999999986 47899999999985 9999999999877678899999999865 268999999999999
Q ss_pred CCCCCcceee--eeeeccccccccccccceeeccccccC---cccCCEEEEEEEEEEEEE
Q 047770 238 QKRHSNSFKR--QYSKWFSAQCYVLGHRKFISLTDLYQS---DVVGDTLIIELQFLSVSA 292 (298)
Q Consensus 238 ~~~~~~~~~~--~~~~~F~~~~~~~G~~~fi~~~~L~~~---fl~~D~l~i~~~v~i~~~ 292 (298)
| .+...... ...+.|.. +.+|||++||+|++|+++ ||+||+++|+|+|+|++.
T Consensus 84 ~-~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 84 A-KGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp T-TSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred C-CCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9 44333222 34567865 457999999999999764 999999999999999953
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=189.71 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=105.6
Q ss_pred eeEEEeCCcccCCCCCcccceeeeCCeeEEEEEeeCCCCCC-CCCeEEEEEEeccCCCCCCCCeEEEEEEEEEecCCCCC
Q 047770 164 TRTWKIPKFSALDDNPRFSQAYTVDERKWKLRLYPMGTAAG-KGEFLALHLMLVDVLDPAPKRAVFAEFDLLLVDQKRHS 242 (298)
Q Consensus 164 ~~~w~i~~fs~l~~~~~~S~~f~~~g~~w~i~~yp~G~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~f~~~l~~~~~~~ 242 (298)
+|+|+|+|||.+++ .+.|++|.+||++|+|.+||+|+... .++|+|+||.|.+. ...++|.+.|+|+|.|+|+ .++
T Consensus 32 ~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~-~~~ 108 (522)
T 2f1z_A 32 TFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY-RDD 108 (522)
T ss_dssp EEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT-TCG
T ss_pred EEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC-CCC
Confidence 99999999999875 89999999999999999999997543 56899999999875 4334899999999999999 444
Q ss_pred -cceeeeeeeccccccccccccceeecccccc---CcccCCEEEEEEEEEEEEEeee
Q 047770 243 -NSFKRQYSKWFSAQCYVLGHRKFISLTDLYQ---SDVVGDTLIIELQFLSVSAVRL 295 (298)
Q Consensus 243 -~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~---~fl~~D~l~i~~~v~i~~~~~~ 295 (298)
.+..+...+.|.....+|||++||+|++|.+ .||+||+++|+|+|+|...+|+
T Consensus 109 ~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~ 165 (522)
T 2f1z_A 109 EKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 165 (522)
T ss_dssp GGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred ccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence 3566677788987677899999999999943 2999999999999999765553
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.50 E-value=1.2e-12 Score=122.21 Aligned_cols=126 Identities=15% Similarity=0.222 Sum_probs=98.2
Q ss_pred cCCCCceeEEEeCCcccCCC---CCcccceeee-CCeeEEEEEeeCCCCCCCCCeEEEEEEeccCCCCCC--CCeE-EEE
Q 047770 158 NPDGATTRTWKIPKFSALDD---NPRFSQAYTV-DERKWKLRLYPMGTAAGKGEFLALHLMLVDVLDPAP--KRAV-FAE 230 (298)
Q Consensus 158 ~p~~~~~~~w~i~~fs~l~~---~~~~S~~f~~-~g~~w~i~~yp~G~~~~~~~~lsv~L~~~~~~~~~~--~~~~-~~~ 230 (298)
.-+|+ .+.|.|+||+++.. ..++||.|.. .||+++|.+||++ ..++|+|++|..+ +++. .|++ +-+
T Consensus 402 ~G~CP-~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG-~~D~~L~WP~~~~q 474 (592)
T 4gwm_A 402 ETRCP-HHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISG-ANDDQLQWPCPWQQ 474 (592)
T ss_dssp SSCCC-SEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECC-TTGGGSCSSCCSEE
T ss_pred eCCCC-CCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecC-CCCCCccCCCCCCE
Confidence 34688 99999999999873 5788998865 7999999999975 4599999999999 6766 9999 688
Q ss_pred EEEEEecCCCCCc---ceeeeee-----------eccc-----------------cccccccccceeeccccccC-cccC
Q 047770 231 FDLLLVDQKRHSN---SFKRQYS-----------KWFS-----------------AQCYVLGHRKFISLTDLYQS-DVVG 278 (298)
Q Consensus 231 f~~~l~~~~~~~~---~~~~~~~-----------~~F~-----------------~~~~~~G~~~fi~~~~L~~~-fl~~ 278 (298)
++|.|++|..+.+ +..+... ..|. .++.+|||+.||+++.|+++ ||+|
T Consensus 475 ~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fiK~ 554 (592)
T 4gwm_A 475 ATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKG 554 (592)
T ss_dssp EEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSSBT
T ss_pred EEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcccC
Confidence 9999999942221 2222211 1122 12357999999999999988 9999
Q ss_pred CEEEEEEEEEEE
Q 047770 279 DTLIIELQFLSV 290 (298)
Q Consensus 279 D~l~i~~~v~i~ 290 (298)
|+|+|.+.|+-+
T Consensus 555 d~~~i~~~~eD~ 566 (592)
T 4gwm_A 555 DDVYILLTVEDI 566 (592)
T ss_dssp TBEEEEEEEEEC
T ss_pred CeEEEEEEEEeC
Confidence 999999999754
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.49 E-value=8.3e-14 Score=130.02 Aligned_cols=138 Identities=10% Similarity=0.185 Sum_probs=106.1
Q ss_pred cccCCCcEEEEEECCcccccCCCCcceEEcCcEEe-CCeeEEEEEEeCCCCCCCCCCeEEEEEEEccCCC-CCCCCeEE-
Q 047770 6 IRNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEA-GNYKWRLVFYPNGNKQDDGDGYISLYLKIDGCNT-CSDNWSVH- 82 (298)
Q Consensus 6 ~~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~-~g~~W~l~~yp~g~~~~~~~~~lSv~L~~~~~~~-~~~~w~~~- 82 (298)
+.+..+..+.|+|.||+++.. .++..++||+|.. .||.++|.+||++ ..|+|||++|+++.. ..++||+.
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~-~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~ 472 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIG-SPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW 472 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTT-CTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred EeeCCCCCCceeecCHHHhhc-CCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence 467788899999999999974 3467899999975 5999999999864 469999999999755 46889994
Q ss_pred EEEEEEEEeCCCCeeE-------EEecC------Ce------------eeeCC-----CCCCccccceeeccccc--cce
Q 047770 83 VNYKLFVLYKDNEFLA-------HRAEG------PI------------RRFDH-----NKHEWGFGKFLSLDTLH--EYL 130 (298)
Q Consensus 83 ~~f~~~l~~~~~~~~~-------~~~~~------~~------------~~F~~-----~~~~~G~~~fi~~~~l~--~~l 130 (298)
-+++|+|++|+..... ...+. .. ..|.. .+.+|||..||+++.|. +||
T Consensus 473 ~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fi 552 (592)
T 4gwm_A 473 QQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFI 552 (592)
T ss_dssp EEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSS
T ss_pred CEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcc
Confidence 7899999999866111 11000 00 01111 12358999999999999 999
Q ss_pred eCCEEEEEEEEEEEecCCce
Q 047770 131 ANDTLVLGAEVFVIVSTGRK 150 (298)
Q Consensus 131 ~dd~l~i~~~i~i~~~~~~~ 150 (298)
+||+|.|.++|.-+....+.
T Consensus 553 K~d~~~i~~~~eD~~~l~~~ 572 (592)
T 4gwm_A 553 KGDDVYILLTVEDISHLNST 572 (592)
T ss_dssp BTTBEEEEEEEEECGGGSSC
T ss_pred cCCeEEEEEEEEeCcccccc
Confidence 99999999999988776543
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=25.23 E-value=11 Score=27.45 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=22.2
Q ss_pred ccCCCcEEEEEECCcccccCCCCcceEEcCcEEe
Q 047770 7 RNSPPAHYTVELNSYSKLFRPEKLEIFESGLFEA 40 (298)
Q Consensus 7 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~ 40 (298)
+.+..|-+.|+|.+|+..+. .|..+.|-.|.+
T Consensus 7 pv~~~gd~vwkIs~F~~RKp--eGty~nsvsFnI 38 (133)
T 3v0r_A 7 PVTTEGDYVWKISEFYGRKP--EGTYYNSLGFNI 38 (133)
T ss_dssp SSCCCCTTEEEEEEEEEEET--TSSSCSEEEEEE
T ss_pred ccccCCceEEEeeeeeeEcC--CCCceeeEEEEE
Confidence 34556788899999998863 456666666654
Done!