Query 047772
Match_columns 498
No_of_seqs 226 out of 1706
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 2E-66 4.4E-71 528.9 29.1 413 14-429 22-461 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 1.6E-61 3.4E-66 513.3 38.3 435 35-490 17-479 (559)
3 KOG1966 Sodium/hydrogen exchan 100.0 4.5E-59 9.7E-64 471.7 13.3 440 30-490 45-511 (670)
4 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 1.7E-50 3.6E-55 429.5 38.6 372 33-427 4-413 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 100.0 1.4E-49 3E-54 411.3 36.5 380 26-425 5-409 (429)
6 PRK05326 potassium/proton anti 100.0 2.1E-43 4.5E-48 380.0 39.0 369 28-429 7-398 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 9E-43 1.9E-47 371.6 34.9 369 26-417 12-435 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 2.7E-41 5.9E-46 330.2 28.2 366 29-427 8-394 (574)
9 KOG4505 Na+/H+ antiporter [Ino 100.0 4.4E-33 9.5E-38 263.9 21.3 368 28-417 14-430 (467)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 7.7E-35 1.7E-39 300.3 1.3 353 34-420 3-380 (380)
11 PRK03659 glutathione-regulated 100.0 2.3E-30 4.9E-35 280.0 31.3 395 29-466 7-425 (601)
12 PRK03562 glutathione-regulated 100.0 3.2E-30 7E-35 279.2 29.8 392 28-465 6-424 (621)
13 COG0475 KefB Kef-type K+ trans 100.0 8.7E-29 1.9E-33 254.4 31.0 358 28-422 7-388 (397)
14 PRK10669 putative cation:proto 100.0 1.5E-27 3.3E-32 257.1 31.1 397 29-465 8-441 (558)
15 PLN03159 cation/H(+) antiporte 100.0 9.4E-26 2E-30 250.8 32.5 333 28-382 44-402 (832)
16 TIGR00932 2a37 transporter, mo 99.9 8.1E-26 1.7E-30 222.6 23.0 250 37-313 2-272 (273)
17 COG4651 RosB Kef-type K+ trans 99.7 2.3E-16 4.9E-21 148.9 21.2 347 29-417 8-387 (408)
18 KOG1650 Predicted K+/H+-antipo 99.5 1.4E-13 3.1E-18 151.7 16.6 366 28-422 24-421 (769)
19 PRK14853 nhaA pH-dependent sod 99.1 6.4E-08 1.4E-12 98.8 27.1 250 96-364 68-341 (423)
20 TIGR00773 NhaA Na+/H+ antiport 98.5 1.9E-06 4.2E-11 86.5 15.1 249 96-364 58-322 (373)
21 PRK09560 nhaA pH-dependent sod 97.6 0.0027 5.8E-08 64.3 16.6 250 96-363 65-330 (389)
22 PRK14854 nhaA pH-dependent sod 97.5 0.0018 3.8E-08 65.3 13.6 249 96-364 62-326 (383)
23 PRK14856 nhaA pH-dependent sod 97.5 0.0054 1.2E-07 63.0 17.4 302 96-421 74-430 (438)
24 COG3004 NhaA Na+/H+ antiporter 97.4 0.012 2.5E-07 57.6 17.5 263 101-381 73-350 (390)
25 PRK09561 nhaA pH-dependent sod 97.4 0.0074 1.6E-07 61.1 16.8 250 96-364 65-329 (388)
26 PF06965 Na_H_antiport_1: Na+/ 97.4 0.00073 1.6E-08 68.1 9.2 252 96-364 61-329 (378)
27 PRK14855 nhaA pH-dependent sod 97.3 0.013 2.8E-07 60.1 17.4 245 96-363 69-360 (423)
28 PF03812 KdgT: 2-keto-3-deoxyg 96.3 0.24 5.2E-06 48.7 16.0 206 52-317 8-218 (314)
29 PRK03659 glutathione-regulated 95.7 0.14 3.1E-06 56.1 13.3 71 96-173 268-338 (601)
30 PRK03562 glutathione-regulated 95.6 0.16 3.5E-06 55.9 13.4 70 96-172 271-340 (621)
31 PF05684 DUF819: Protein of un 95.3 4.3 9.3E-05 41.8 27.5 286 52-371 23-332 (378)
32 PF03601 Cons_hypoth698: Conse 95.0 3.1 6.8E-05 41.5 19.0 112 51-178 23-138 (305)
33 PRK10669 putative cation:proto 94.4 0.84 1.8E-05 49.7 14.5 71 96-173 279-349 (558)
34 TIGR00698 conserved hypothetic 94.3 6.8 0.00015 39.6 24.6 142 54-212 31-175 (335)
35 PRK12460 2-keto-3-deoxyglucona 94.2 4.7 0.0001 40.0 17.6 128 52-187 8-135 (312)
36 PLN03159 cation/H(+) antiporte 93.8 0.43 9.2E-06 54.4 11.0 92 96-194 325-421 (832)
37 COG0385 Predicted Na+-dependen 93.7 8.2 0.00018 38.5 20.2 75 96-176 41-115 (319)
38 TIGR00808 malonate_madM malona 93.5 1.5 3.3E-05 40.3 11.7 133 30-177 19-170 (254)
39 PF03956 DUF340: Membrane prot 93.3 0.22 4.7E-06 46.1 6.3 130 58-210 2-136 (191)
40 PF03616 Glt_symporter: Sodium 93.0 3.2 7E-05 42.6 15.0 115 29-160 223-340 (368)
41 COG0475 KefB Kef-type K+ trans 92.9 1.4 3E-05 45.8 12.3 122 32-173 224-346 (397)
42 TIGR00832 acr3 arsenical-resis 92.8 12 0.00026 37.8 20.5 76 97-177 47-122 (328)
43 TIGR03802 Asp_Ala_antiprt aspa 92.6 0.93 2E-05 49.3 11.0 125 38-185 17-148 (562)
44 COG2855 Predicted membrane pro 92.5 1.6 3.5E-05 43.6 11.5 163 29-212 13-178 (334)
45 PF03616 Glt_symporter: Sodium 92.5 14 0.00031 37.9 29.4 137 28-182 8-153 (368)
46 PF05982 DUF897: Domain of unk 92.5 1.6 3.5E-05 43.4 11.4 141 54-210 176-323 (327)
47 PF06826 Asp-Al_Ex: Predicted 92.3 1.6 3.6E-05 39.5 10.5 104 38-155 4-113 (169)
48 TIGR00210 gltS sodium--glutama 92.3 4.7 0.0001 41.8 15.1 165 29-207 221-392 (398)
49 TIGR03082 Gneg_AbrB_dup membra 91.6 9 0.0002 34.1 14.5 128 35-185 3-132 (156)
50 COG2431 Predicted membrane pro 91.4 0.66 1.4E-05 44.7 7.1 90 56-166 108-202 (297)
51 TIGR00783 ccs citrate carrier 90.7 2 4.4E-05 43.3 10.2 127 40-181 192-324 (347)
52 PF03601 Cons_hypoth698: Conse 89.8 7.8 0.00017 38.7 13.5 163 243-424 4-172 (305)
53 PF01758 SBF: Sodium Bile acid 89.7 1.4 3.1E-05 40.5 7.8 106 97-208 2-107 (187)
54 PRK12460 2-keto-3-deoxyglucona 89.5 4.3 9.3E-05 40.3 11.1 60 96-162 195-254 (312)
55 COG0786 GltS Na+/glutamate sym 89.1 29 0.00062 35.6 26.4 133 28-183 10-155 (404)
56 PF03390 2HCT: 2-hydroxycarbox 89.0 4.7 0.0001 41.6 11.4 135 29-181 252-391 (414)
57 TIGR00841 bass bile acid trans 87.9 29 0.00064 34.2 21.5 81 98-187 13-98 (286)
58 PRK04972 putative transporter; 87.6 7.3 0.00016 42.4 12.6 91 29-137 14-107 (558)
59 PRK05326 potassium/proton anti 87.5 5.5 0.00012 43.5 11.7 62 96-164 277-339 (562)
60 TIGR00698 conserved hypothetic 86.9 14 0.0003 37.4 13.2 35 243-277 8-47 (335)
61 COG1346 LrgB Putative effector 85.2 34 0.00075 32.3 14.6 138 29-185 8-147 (230)
62 PF05145 AmoA: Putative ammoni 85.0 10 0.00023 38.1 11.3 112 29-160 154-267 (318)
63 COG0786 GltS Na+/glutamate sym 84.4 16 0.00035 37.3 12.1 163 30-207 225-395 (404)
64 PRK03818 putative transporter; 83.5 11 0.00024 40.9 11.5 107 28-155 7-119 (552)
65 COG3493 CitS Na+/citrate sympo 82.6 16 0.00034 37.2 11.0 139 30-181 266-410 (438)
66 COG0798 ACR3 Arsenite efflux p 82.1 60 0.0013 32.7 21.8 110 96-212 54-164 (342)
67 TIGR00659 conserved hypothetic 80.7 41 0.00089 31.9 12.7 132 36-186 12-145 (226)
68 TIGR00844 c_cpa1 na(+)/h(+) an 80.3 15 0.00033 41.3 11.0 73 244-316 21-93 (810)
69 TIGR00793 kdgT 2-keto-3-deoxyg 80.0 63 0.0014 32.0 13.9 167 96-317 48-218 (314)
70 PRK04288 antiholin-like protei 79.6 45 0.00097 31.8 12.6 137 30-186 11-151 (232)
71 COG2855 Predicted membrane pro 78.5 29 0.00063 34.8 11.4 154 247-424 23-181 (334)
72 COG3180 AbrB Putative ammonia 78.3 44 0.00096 33.8 12.7 108 32-160 190-300 (352)
73 TIGR00210 gltS sodium--glutama 76.6 1E+02 0.0022 32.1 30.6 133 28-182 8-153 (398)
74 PRK05274 2-keto-3-deoxyglucona 75.0 48 0.001 33.4 12.1 120 53-183 11-138 (326)
75 PRK01663 C4-dicarboxylate tran 74.8 1.2E+02 0.0025 32.0 15.4 117 86-212 36-163 (428)
76 PRK11283 gltP glutamate/aspart 74.6 1.1E+02 0.0024 32.2 15.3 27 182-212 147-173 (437)
77 COG2985 Predicted permease [Ge 73.8 25 0.00055 37.0 9.8 83 96-185 62-149 (544)
78 TIGR00946 2a69 he Auxin Efflux 72.9 29 0.00063 34.7 10.2 42 96-137 214-255 (321)
79 TIGR03802 Asp_Ala_antiprt aspa 72.3 30 0.00065 37.7 10.7 108 55-179 416-530 (562)
80 KOG3826 Na+/H+ antiporter [Ino 72.3 5.6 0.00012 37.5 4.3 134 29-176 99-235 (252)
81 COG3329 Predicted permease [Ge 71.4 7.3 0.00016 38.2 5.0 152 44-209 209-366 (372)
82 COG0679 Predicted permeases [G 70.1 1.2E+02 0.0026 30.2 23.2 109 261-382 167-277 (311)
83 PRK04972 putative transporter; 68.6 27 0.00058 38.1 9.3 135 29-180 383-526 (558)
84 TIGR00946 2a69 he Auxin Efflux 66.6 1.4E+02 0.0031 29.7 24.9 110 261-382 181-290 (321)
85 PF00999 Na_H_Exchanger: Sodiu 65.6 3.4 7.5E-05 42.4 1.7 114 40-173 223-339 (380)
86 PF03812 KdgT: 2-keto-3-deoxyg 64.6 26 0.00056 34.8 7.4 45 90-134 194-238 (314)
87 PRK03818 putative transporter; 63.1 31 0.00067 37.5 8.5 127 30-173 372-510 (552)
88 PF13593 DUF4137: SBF-like CPA 62.9 1.7E+02 0.0037 29.3 22.9 33 87-122 28-60 (313)
89 TIGR01625 YidE_YbjL_dupl AspT/ 62.2 63 0.0014 28.8 8.9 112 54-180 21-138 (154)
90 COG0679 Predicted permeases [G 60.4 1.9E+02 0.004 28.9 13.1 87 89-190 196-288 (311)
91 PF03547 Mem_trans: Membrane t 60.0 2E+02 0.0044 29.2 15.9 45 263-312 8-53 (385)
92 PRK10711 hypothetical protein; 59.7 1.6E+02 0.0036 28.0 11.9 130 36-184 13-144 (231)
93 PF04172 LrgB: LrgB-like famil 57.3 82 0.0018 29.7 9.1 67 111-186 69-135 (215)
94 TIGR00400 mgtE Mg2+ transporte 57.0 69 0.0015 33.9 9.7 33 176-209 411-443 (449)
95 PRK09903 putative transporter 54.7 46 0.00099 33.3 7.6 23 96-118 205-227 (314)
96 PF03818 MadM: Malonate/sodium 54.2 67 0.0015 23.5 6.1 40 30-72 18-57 (60)
97 TIGR00793 kdgT 2-keto-3-deoxyg 53.7 94 0.002 30.8 9.1 45 90-134 194-238 (314)
98 COG2985 Predicted permease [Ge 51.7 37 0.0008 35.8 6.3 135 27-180 365-510 (544)
99 COG5336 Uncharacterized protei 51.5 43 0.00093 27.7 5.3 37 32-72 52-88 (116)
100 COG1301 GltP Na+/H+-dicarboxyl 50.9 3.1E+02 0.0068 28.6 16.3 113 88-212 39-157 (415)
101 PRK10263 DNA translocase FtsK; 49.9 1.7E+02 0.0036 35.2 11.7 14 262-275 64-77 (1355)
102 TIGR00932 2a37 transporter, mo 49.1 1.4E+02 0.0031 28.8 10.0 63 249-317 4-66 (273)
103 PF00375 SDF: Sodium:dicarboxy 47.7 2.8E+02 0.0061 28.6 12.3 199 56-270 4-231 (390)
104 PRK09903 putative transporter 44.6 3.3E+02 0.0071 27.0 26.8 108 262-382 173-280 (314)
105 PRK04125 murein hydrolase regu 43.0 2.3E+02 0.005 24.8 9.0 38 105-142 77-114 (141)
106 PRK13027 C4-dicarboxylate tran 42.0 4.3E+02 0.0094 27.7 15.4 212 47-274 2-232 (421)
107 COG3329 Predicted permease [Ge 40.1 3.3E+02 0.0071 27.2 10.3 114 54-185 16-133 (372)
108 KOG1650 Predicted K+/H+-antipo 39.7 92 0.002 35.4 7.7 70 96-173 313-382 (769)
109 TIGR02454 CbiQ_TIGR cobalt ABC 36.9 1.2E+02 0.0026 27.7 6.9 24 165-188 111-134 (198)
110 TIGR00831 a_cpa1 Na+/H+ antipo 36.4 3.3E+02 0.0071 29.5 11.1 33 245-277 6-38 (525)
111 KOG2718 Na+-bile acid cotransp 34.8 1.9E+02 0.004 29.8 8.2 110 96-211 116-225 (371)
112 TIGR00783 ccs citrate carrier 33.5 5.3E+02 0.012 26.3 21.4 208 96-312 28-253 (347)
113 PRK01658 holin-like protein; V 32.5 3.1E+02 0.0068 23.3 9.5 37 106-142 75-111 (122)
114 PF02667 SCFA_trans: Short cha 29.1 7.1E+02 0.015 26.4 14.2 19 363-381 146-164 (453)
115 PF06946 Phage_holin_5: Phage 28.2 2.1E+02 0.0047 23.0 5.8 40 33-74 12-54 (93)
116 PRK05274 2-keto-3-deoxyglucona 27.2 1.4E+02 0.0031 30.1 5.9 38 96-133 202-239 (326)
117 PF03547 Mem_trans: Membrane t 26.5 5.3E+02 0.011 26.2 10.3 54 262-316 244-297 (385)
118 PRK01821 hypothetical protein; 26.2 4.3E+02 0.0093 22.9 8.9 37 106-142 80-116 (133)
119 COG3180 AbrB Putative ammonia 25.8 7.2E+02 0.016 25.3 25.7 143 29-196 8-154 (352)
120 PRK11486 flagellar biosynthesi 25.6 1.8E+02 0.0039 24.9 5.3 18 33-50 26-43 (124)
121 PF03956 DUF340: Membrane prot 24.2 1.8E+02 0.004 26.8 5.7 86 264-366 1-90 (191)
122 COG0805 TatC Sec-independent p 23.7 1.7E+02 0.0037 28.4 5.5 22 152-173 198-219 (255)
123 PF01769 MgtE: Divalent cation 23.3 2.5E+02 0.0055 23.9 6.2 29 176-205 103-131 (135)
124 PF12911 OppC_N: N-terminal TM 23.2 1.1E+02 0.0024 21.5 3.3 22 112-133 9-30 (56)
125 TIGR02230 ATPase_gene1 F0F1-AT 21.4 3.7E+02 0.0081 22.0 6.2 32 37-69 57-89 (100)
126 PF03814 KdpA: Potassium-trans 21.4 1.1E+03 0.023 25.7 11.5 37 243-279 352-398 (552)
127 PRK14855 nhaA pH-dependent sod 20.4 2.6E+02 0.0057 29.2 6.4 65 251-315 10-85 (423)
128 PF06123 CreD: Inner membrane 20.4 6E+02 0.013 26.8 9.1 35 31-69 303-337 (430)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-66 Score=528.93 Aligned_cols=413 Identities=46% Similarity=0.753 Sum_probs=360.6
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCccccc--ccccccChhhh
Q 047772 14 PRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNI--SAYLLLDFEFY 91 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i--~~~~~~~~~~~ 91 (498)
.+++++++|+++++++++++++|+++.+.+|++++.|++++||++..+++|+++|.+.+..+.+..- .+...++||.|
T Consensus 22 ~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~f 101 (575)
T KOG1965|consen 22 SDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLF 101 (575)
T ss_pred cccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHH
Confidence 3567788899999999999999999999999999999999999999999999999877765433221 14467899999
Q ss_pred hhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchH
Q 047772 92 LQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPV 171 (498)
Q Consensus 92 ~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv 171 (498)
+ .+.||||+|++|+++++++++||..++..++++||++++.++|..+|+.+......++++.+|+++||++||||||
T Consensus 102 f---~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPV 178 (575)
T KOG1965|consen 102 F---LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPV 178 (575)
T ss_pred H---HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCch
Confidence 9 9999999999999999999999999999999999999999999999976554457789999999999999999999
Q ss_pred HHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---------------
Q 047772 172 TVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI--------------- 236 (498)
Q Consensus 172 ~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~--------------- 236 (498)
++++|+++++++++++.+++|||++|||++||++..+..+...........+.+..|+..++|+.
T Consensus 179 tvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK 258 (575)
T KOG1965|consen 179 TVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLK 258 (575)
T ss_pred HHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887543333444466777777776665
Q ss_pred ------chhhhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047772 237 ------LQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMG 310 (498)
Q Consensus 237 ------~~~~~~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG 310 (498)
.+..|..+.+.++|.+|++||.+|+||++++++||++++||.++|+++++|...+++|+.+++++|+++|+|+|
T Consensus 259 ~~~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~G 338 (575)
T KOG1965|consen 259 FLYLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLG 338 (575)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCCccchhheeccC-cchhHHHHHHhhhccC
Q 047772 311 FDIA-MEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPA--HRQIPLKHQQALWYSG-LRGAMAFALALQSVHD 386 (498)
Q Consensus 311 ~~l~-~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G-~rG~valala~~~~~~ 386 (498)
+.+. ..+..|....++..+.+.++++|++.+++++++.|+.|+. ..+++.++|.++||+| +||++++|||.....+
T Consensus 339 l~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~ 418 (575)
T KOG1965|consen 339 LSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTD 418 (575)
T ss_pred HHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccc
Confidence 8753 4444454345788888999999999999999999998741 2348999999999999 8999999999875443
Q ss_pred CCccchhhHHhhhhhhehhhHhhhhhcHHHHHHHcccccCCCC
Q 047772 387 LPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGDAHD 429 (498)
Q Consensus 387 ~~~~~~~~i~~~~~~vvl~T~~i~g~~~~~l~~~l~~~~~~~~ 429 (498)
-|...+++++++|+.+|++|+++.|.++.|+++.|..+.+...
T Consensus 419 ~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~ 461 (575)
T KOG1965|consen 419 SPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAA 461 (575)
T ss_pred cccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccc
Confidence 3322468999999999999999999999999999998766544
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=1.6e-61 Score=513.26 Aligned_cols=435 Identities=30% Similarity=0.508 Sum_probs=339.6
Q ss_pred HHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchh
Q 047772 35 MLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKP 114 (498)
Q Consensus 35 lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~ 114 (498)
+..++.+.-++..| +.+++|++++++++|+++|++....+.. +...++|++|+ .++||+|+|++|+++|+++
T Consensus 17 ~~~~~~~~~~~~~~-~~~~lP~s~llil~GlllG~i~~~~~~~----~~~~l~~~lf~---~~~LPpIlFe~g~~l~~~~ 88 (559)
T TIGR00840 17 LASLAKIGFHLTHK-VIRAVPESVLLIVYGLLVGGIIKASPHI----DPPTLDSSYFF---LYLLPPIVLDAGYFMPQRN 88 (559)
T ss_pred HHHHHHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHHHcCCCC----ccCCcCHHHHH---HHHHHHHHHHHHhcCCHHH
Confidence 33344444444433 3567999999999999999865432211 22578999999 9999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-h-hcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhh
Q 047772 115 FFSNFGAIVTFAIFGTFLASMVTGILVYLGGVM-F-LMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFG 192 (498)
Q Consensus 115 l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~g 192 (498)
|++|+++++.+|++|++++++++|..+|+.... . ...++||.+|+++||++|||||+++++++++.++|+++.++++|
T Consensus 89 f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~g 168 (559)
T TIGR00840 89 FFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFG 168 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhheeh
Confidence 999999999999999999999999998842110 0 12467999999999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHccC---CcchHHHHHHHHHHH-----HHHH----hc----------chhhhHHHHHHHHH
Q 047772 193 ESVLNDAMAISLYRTMSLVRSHA---SSGQNFFMVIVRFLE-----TFVG----SI----------LQNLECCLFVLFPY 250 (498)
Q Consensus 193 Es~lnD~~aivl~~~~~~~~~~~---~~~~~~~~~i~~~l~-----~~~g----~~----------~~~~~~~~~l~~~~ 250 (498)
||++||++|+++|.++.++.... .+..++...+..|+. ..+| .+ .+..+..++++++|
T Consensus 169 ESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~y 248 (559)
T TIGR00840 169 ESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISY 248 (559)
T ss_pred hhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999999999999876421 111222222222222 2222 21 12467889999999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHH
Q 047772 251 FSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSI 330 (498)
Q Consensus 251 ~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~~~ 330 (498)
++|.+||.+|.||++|+++||+++++|.+.|.+++++...+.+|+.+++++|+++|+++|+++......|+ +.++++++
T Consensus 249 l~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~-~~~i~~~l 327 (559)
T TIGR00840 249 LSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWN-WAFVVATL 327 (559)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765545565 46677778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhcc-CCCccchhhHHhhhhhhehhhHhh
Q 047772 331 LFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVH-DLPEGHGQTIFSATTVIVVLTVLL 409 (498)
Q Consensus 331 ~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~~-~~~~~~~~~i~~~~~~vvl~T~~i 409 (498)
++++++|++++++++++.|++| +.+++++|+.+++|+|+||++++++|+..+. ..| .++.++++|+.+|++|+++
T Consensus 328 ~~~ll~R~l~V~~~~~~~~~~~--~~~~~~~e~~il~w~GlRGaVa~aLAl~l~~~~~~--~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 328 SFCVIYRVLGVRTLSWITNEFR--PVEIPYKDQLVIFYAGLRGAVAFALALLLDEKIFP--YKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCCCChhhhhheeeeccccHHHHHHHHhCCCCCcc--hHHHHHHHHHeeehHHHHH
Confidence 8899999999999999999886 4688999999999999999999999987543 223 5789999999999999999
Q ss_pred hhhcHHHHHHHcccccCCCCCCCCCcccCCCCCCCC---CCCCCCCcchhHHHHHHhhhhhhHHHhhccccccccccccC
Q 047772 410 IGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAP---YDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHN 486 (498)
Q Consensus 410 ~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~ 486 (498)
||.+++|++|++++++++++++..+ ++.+++..++ ..| ...+| ..+++-.+.|+.+|+||+||++.++.
T Consensus 404 qG~T~~pl~~~L~l~~~~~~~~~~~-e~~~~~~~~~~~~~ie-~~~g~------~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (559)
T TIGR00840 404 QGGTIKPLVEVLKVKKGCISKTKIN-EELHDREFDHLLPGIE-DICGQ------IGHDRAIDKLNGFDIKYLLKPLIRRN 475 (559)
T ss_pred HHhhHHHHHHHhCCCCCccchhhHH-HHHHHHHHHHHHhHHH-HHhhh------cchHHHHHHHHHHhhhhChHhhcCCc
Confidence 9999999999999987665432111 1111111111 000 11111 12233335588899999999999887
Q ss_pred CCCC
Q 047772 487 GDEE 490 (498)
Q Consensus 487 ~~~~ 490 (498)
..++
T Consensus 476 ~~~~ 479 (559)
T TIGR00840 476 SPKS 479 (559)
T ss_pred cccc
Confidence 7665
No 3
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-59 Score=471.68 Aligned_cols=440 Identities=28% Similarity=0.503 Sum_probs=352.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhC
Q 047772 30 LLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFS 109 (498)
Q Consensus 30 l~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~ 109 (498)
.+..++..++.+.-+...+.+ +.+||++.++++|+++|.+........ ...++++.|+ .+.||||++++||.
T Consensus 45 ~lwil~asLaKi~fh~~~~l~-~i~PES~lLI~~Gl~lG~ii~~~~~~~----~~~L~s~vFF---lyLLPPIvlDAGYf 116 (670)
T KOG1966|consen 45 TLWILVASLAKIVFHLMPKLR-KIVPESCLLIILGLVLGGIIKALATIA----PFFLESDVFF---LYLLPPIVLDAGYF 116 (670)
T ss_pred HHHHHHHHHHHhccccccccc-ccCchhHHHHHHHHHHHHHHHhhhccc----cccccccchh---hhhcCHHHhccccc
Confidence 333444445566666665554 359999999999999998766433211 2467889999 99999999999999
Q ss_pred CCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc--CcHHHHHHhccccCCcchHHHHHHHHhhCCChhhH
Q 047772 110 LSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYR--LPFVECLMFGALISATDPVTVLSIFQELGTDMNLY 187 (498)
Q Consensus 110 l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~--~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~ 187 (498)
|+.|.|..|...|+++|++||+.+++.+|..+|.....+ .++ .++.+-++||+++|+.|||||+++++|.++++-++
T Consensus 117 Mp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~g-lf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~Lf 195 (670)
T KOG1966|consen 117 MPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSG-LFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLF 195 (670)
T ss_pred CccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEE
Confidence 999999999999999999999999999999988655433 345 67999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhHHHHHHHHHHHHccCCc---c-------hH-----HHHHHHHHHHHHHHhc-------chhhhHHHH
Q 047772 188 ALVFGESVLNDAMAISLYRTMSLVRSHASS---G-------QN-----FFMVIVRFLETFVGSI-------LQNLECCLF 245 (498)
Q Consensus 188 ~ll~gEs~lnD~~aivl~~~~~~~~~~~~~---~-------~~-----~~~~i~~~l~~~~g~~-------~~~~~~~~~ 245 (498)
.+++|||++||++.+|+|.++.++..-++. . .+ .+..+...+..+++++ .|..++++.
T Consensus 196 I~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrviePvfi 275 (670)
T KOG1966|consen 196 IIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFI 275 (670)
T ss_pred eeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecchhh
Confidence 999999999999999999999998643211 1 11 1122222222333333 356789999
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHH
Q 047772 246 VLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGF 325 (498)
Q Consensus 246 l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~ 325 (498)
+.++|++|+.||.+|+|||+|+.+||+.|.+|...|+++++...++.+.++++...|+++|+++|++.....+.|+ +.+
T Consensus 276 f~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd-~~F 354 (670)
T KOG1966|consen 276 FLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWD-FAF 354 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceee-hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888887 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhc-cCCCccchhhHHhhhhhheh
Q 047772 326 IFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSV-HDLPEGHGQTIFSATTVIVV 404 (498)
Q Consensus 326 ~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~-~~~~~~~~~~i~~~~~~vvl 404 (498)
+.++++.|.+.|++++...+|++|++|. .+++..+|++|+++|+||++|++|..... ..+| ..+.+.++|+.+|.
T Consensus 355 i~~T~~fc~~~R~lgv~~lt~~~N~fr~--~k~~~~DQfimsyGGLRGAiaF~LV~lid~~~vp--~K~~Fvttti~VIf 430 (670)
T KOG1966|consen 355 ICLTLVFCLIYRAIGVVVLTWFLNKFRM--VKLEFVDQFIMSYGGLRGAIAFGLVVLIDGAKVP--AKNMFVTTTIAVIF 430 (670)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhe--eeccccceeeeecCCcchhhheeEEEEeccccCC--cccceEeeeeEEEe
Confidence 9999999999999999999999999994 78999999999999999999999998755 3344 46889999999999
Q ss_pred hhHhhhhhcHHHHHHHcccccCCCCCCCCCcccCCCCCCCCCCCCCCCcchhHHH--HHHhhhhhhHHHhhccccccccc
Q 047772 405 LTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAPYDEGSTSGNKLKMK--LKEFRKSAASFTALDKNYLTPFF 482 (498)
Q Consensus 405 ~T~~i~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~p~~ 482 (498)
+|+++||.+++|++++|++++++.+++.-. ++...++.+|. .+ ..++. .+.++...++|+.+|+||+||.+
T Consensus 431 FTVflQGiTIkplvk~L~Vk~~~~~~~~m~-e~i~~~~~dhl----m~--gIEDi~G~~gh~~~rdk~~~fn~kylrp~L 503 (670)
T KOG1966|consen 431 FTVFLQGITIKPLVKFLKVKRKNKRDPTMN-EEIYNRLLDHL----MA--GIEDIAGQKGHYYWRDKFERFNNKYLRPLL 503 (670)
T ss_pred eeeeecccchHHHHHHHccccccccCchhh-HHHHHHHHHHH----HH--HHHHHhcccccchhhhhHHHHHhhhchHHH
Confidence 999999999999999999998776543211 11111122110 00 00010 11223333458888999999999
Q ss_pred cccCCCCC
Q 047772 483 TSHNGDEE 490 (498)
Q Consensus 483 ~~~~~~~~ 490 (498)
.++..+++
T Consensus 504 ~r~~~~~~ 511 (670)
T KOG1966|consen 504 MRHRREEK 511 (670)
T ss_pred hhhhhccc
Confidence 99833333
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=1.7e-50 Score=429.48 Aligned_cols=372 Identities=21% Similarity=0.325 Sum_probs=294.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCc
Q 047772 33 IMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSP 112 (498)
Q Consensus 33 ~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~ 112 (498)
..+++.+.....+.+|.| +|.+++++++|+++|+..... ...++|+.++ .++||+++|++|+++|+
T Consensus 4 ~~l~~~~~~~~~l~~r~~---lP~~v~lil~Gi~lg~~~~~~--------~~~~~~~~~~---~~~Lp~lLF~~g~~~~~ 69 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIR---LPYPIALILAGLLLGLAGLLP--------EVPLDREIVL---FLFLPPLLFEAAMNTDL 69 (525)
T ss_pred HHHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHHhccccC--------CCCCCHHHHH---HHHHHHHHHHHHhcCCH
Confidence 344455566678889998 999999999999999764432 1457888888 89999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhh
Q 047772 113 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFG 192 (498)
Q Consensus 113 ~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~g 192 (498)
+++|||+++++.++++++++++++++...| +.+++||..|+++||+++||||+++.+++++.++|+|+.++++|
T Consensus 70 ~~l~~~~~~i~~la~~~vlit~~~v~~~~~------~~~~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~g 143 (525)
T TIGR00831 70 RELRENFRPIALIAFLLVVVTTVVVGFSLN------WILGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEG 143 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhh
Confidence 999999999999999999999999998887 36789999999999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHH---------HHHHHHhc----------chhhhHHHHHHHHHHHH
Q 047772 193 ESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRF---------LETFVGSI----------LQNLECCLFVLFPYFSY 253 (498)
Q Consensus 193 Es~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~---------l~~~~g~~----------~~~~~~~~~l~~~~~~~ 253 (498)
||++||++++++|.++..+..+.. ..+....+..| ++..+|.+ .+..+..++++++|++|
T Consensus 144 ESllND~~alvlf~~~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y 222 (525)
T TIGR00831 144 ESLLNDGAALVVFAIAVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGF 222 (525)
T ss_pred hhhhcchHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999999999988765311 11111111121 22222222 12346788999999999
Q ss_pred HHHHhhccchhHHHHHHHHHhhccccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-cchh----HH---H
Q 047772 254 MLAEGLGLSGIVSILFTGIVMKRYTFS-NLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEK-HSWS----HL---G 324 (498)
Q Consensus 254 ~lae~~g~Sgilav~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~-~~~~----~~---~ 324 (498)
++||.+|.||++|+++||++++|+.++ +.+++.+...+.+|+.+++++|+++|+++|+.++... ..|. .+ .
T Consensus 223 ~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~ 302 (525)
T TIGR00831 223 LLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVI 302 (525)
T ss_pred HHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 999999999999999999999998876 7778888889999999999999999999999986421 1111 00 0
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCCCccchhheeccCcchhHHHHHHhhhccCC----Cccchhh
Q 047772 325 -----FIFFSILFIIVARAANVFSCAYLVNL-ARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDL----PEGHGQT 394 (498)
Q Consensus 325 -----~~~~~~~~~~v~R~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~~~~----~~~~~~~ 394 (498)
..+++...+.+.|++.++. .+.|+ .++.+++.+||++.+++|+|+||++++++|+..+... |-+.++.
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p~r~~ 380 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFPARYE 380 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCchHHH
Confidence 1222333445667654433 23332 2333456789999999999999999999998765332 2235788
Q ss_pred HHhhhhhhehhhHhhhhhcHHHHHHHcccccCC
Q 047772 395 IFSATTVIVVLTVLLIGGSTGTMLEALQVVGDA 427 (498)
Q Consensus 395 i~~~~~~vvl~T~~i~g~~~~~l~~~l~~~~~~ 427 (498)
+...++.+|++|+++||.++|+++|++++++++
T Consensus 381 i~~~~~~vVl~TllvqG~tlp~l~r~l~~~~~~ 413 (525)
T TIGR00831 381 LVFLAAGVILFSLLVQGISLPIFVKRKFVSEHS 413 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCCC
Confidence 999999999999999999999999999987553
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=411.32 Aligned_cols=380 Identities=24% Similarity=0.397 Sum_probs=316.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHh-hhccCcccccccccccChhhhhhcccccchHHhh
Q 047772 26 GVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGAL-ANISNTETNISAYLLLDFEFYLQHFSFLDSFRHT 104 (498)
Q Consensus 26 ~~~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF 104 (498)
...++...+++.++...+.+.+|++ +|++..+++.|++.|+. .+..+. ..+.++|.+. .+++|+++|
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l~---~~~i~~~ll~g~i~g~~~l~~~~~------~~~~~~el~~---~l~l~ilLf 72 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRLL---LPEIPLLLLLGLLGGPPGLNLISP------DLELDPELFL---VLFLAILLF 72 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHhhhhhccccc------cccCChHHHH---HHHHHHHHH
Confidence 3456777788888899999999998 99999999999999964 443322 2466888888 899999999
Q ss_pred hhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCCh
Q 047772 105 QSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDM 184 (498)
Q Consensus 105 ~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~ 184 (498)
++|+++|++++||+++++..+++++++++++.+|+..|+ +.+++|+..|+++||++|||||+++.+++++.++|+
T Consensus 73 ~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~-----l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ 147 (429)
T COG0025 73 AGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHW-----LLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPK 147 (429)
T ss_pred HhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCH
Confidence 999999999999999999999999999999999999993 456899999999999999999999999999999999
Q ss_pred hhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHH---------HHHhc---------c-----hhhh
Q 047772 185 NLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLET---------FVGSI---------L-----QNLE 241 (498)
Q Consensus 185 ~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~---------~~g~~---------~-----~~~~ 241 (498)
|+.++++|||++||++++++|.+..+...++... +.......++.. +.|.. . +..+
T Consensus 148 ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~ 226 (429)
T COG0025 148 RIRTILEGESLLNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLE 226 (429)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHH
Confidence 9999999999999999999999999987642221 122222222222 22222 1 2357
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccch
Q 047772 242 CCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSE-NSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSW 320 (498)
Q Consensus 242 ~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~ 320 (498)
..+++..++.+|.+||.+|.||++|++++|++.+++.+.+.++ +.|.+.+++|+.+++++|.++|+++|.+++......
T Consensus 227 ~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~ 306 (429)
T COG0025 227 TLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA 306 (429)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 7899999999999999999999999999999998555555554 347788999999999999999999999998766544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhccCCCccchhhHHhhhh
Q 047772 321 SHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATT 400 (498)
Q Consensus 321 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~~~~~~~~~~~i~~~~~ 400 (498)
..+..+++....++++|++++++..+..+ ++.++..+++++.+++|+|+||++++++|+..+...+...++.+...++
T Consensus 307 ~~~~~~l~~~~~~~v~R~~~V~~~~~~~~--~~~~~~~~~~~~~~l~w~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~ 384 (429)
T COG0025 307 LGLLGLLVALVAVLLARPLWVFLSLKGSN--LKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLELPGPARELILFIVF 384 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccCCCCHHHHHHHhhcccccHHHHHHHHHchhhccchhhhHHHHHHH
Confidence 44667788888999999999999988654 2333567999999999999999999999998765444334788888999
Q ss_pred hhehhhHhhhhhcHHHHHHHccccc
Q 047772 401 VIVVLTVLLIGGSTGTMLEALQVVG 425 (498)
Q Consensus 401 ~vvl~T~~i~g~~~~~l~~~l~~~~ 425 (498)
.+|++|+++||.+.|++.+++...+
T Consensus 385 ~vIl~Sl~v~g~t~~~l~~~~~~~~ 409 (429)
T COG0025 385 LVILFSLLVQGLTLPPLAKKLEVSE 409 (429)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCc
Confidence 9999999999999999999987643
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=2.1e-43 Score=380.03 Aligned_cols=369 Identities=22% Similarity=0.333 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHh-hhccCcccccccccccChhhhhhcccccchHHhhhh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGAL-ANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQS 106 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~ 106 (498)
.++.++++++++.+++.+.+|++ +|.+++++++|+++||. ++.....+ .+ ..+.+. ++++++++|++
T Consensus 7 ~ll~~~~ll~l~~~~~~l~~r~~---~P~ll~~il~GillGp~~lg~i~~~~-----~~-~~~~i~---~l~L~~iLF~~ 74 (562)
T PRK05326 7 LLLIGALLLLLSILASRLSSRLG---IPSLLLFLAIGMLAGEDGLGGIQFDN-----YP-LAYLVG---NLALAVILFDG 74 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhCccccCCcccCc-----HH-HHHHHH---HHHHHHHHHcC
Confidence 45677788889999999999999 99999999999999973 22221100 00 123555 89999999999
Q ss_pred hhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC--CCh
Q 047772 107 GFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG--TDM 184 (498)
Q Consensus 107 G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~--~~~ 184 (498)
|+++|++.+||++++++.+++.|+++++++++...+ +.++++|..|+++|+++++|||+++.+++++.+ +++
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~------~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~ 148 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAH------WLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKE 148 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcch
Confidence 999999999999999999999999999999888776 467899999999999999999999999999999 999
Q ss_pred hhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHH---HHHHHHH-----HHHHHHhc-------c----hhhhHHHH
Q 047772 185 NLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNF---FMVIVRF-----LETFVGSI-------L----QNLECCLF 245 (498)
Q Consensus 185 ~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~---~~~i~~~-----l~~~~g~~-------~----~~~~~~~~ 245 (498)
++++++++||++||+++++++.++..+...+....++ ...+..+ ++...|.. . ++...+++
T Consensus 149 ~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~ 228 (562)
T PRK05326 149 RVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILV 228 (562)
T ss_pred hHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHH
Confidence 9999999999999999999999888776432211111 1111111 11111111 1 12457788
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHH
Q 047772 246 VLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGF 325 (498)
Q Consensus 246 l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~ 325 (498)
+++++++|++||.+|.||++|+|++|++++|..... ++..+++++.+++++++++|+++|+.++........+..
T Consensus 229 l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~-----~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~ 303 (562)
T PRK05326 229 LAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRH-----RHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPA 303 (562)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999865432 456888999999999999999999998765432112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhc-cCCCccchhhHHhhhhhheh
Q 047772 326 IFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSV-HDLPEGHGQTIFSATTVIVV 404 (498)
Q Consensus 326 ~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~-~~~~~~~~~~i~~~~~~vvl 404 (498)
+++.++.++++|++++++..+ ..++++||+.+++|+|+||++++++|..+. .+.+ ..+.++++++.+|+
T Consensus 304 l~i~~~l~~vaR~l~v~l~~~--------~~~~~~~e~~~i~~~g~RG~v~i~lA~~~~~~~~~--~~~~~~~~~~~vvl 373 (562)
T PRK05326 304 LLLALFLILVARPLAVFLSLL--------PFRFNLREKLFISWVGLRGAVPIVLATFPMMAGLP--NAQLIFNVVFFVVL 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--------cCCCCHhhhheeeeecchhHHHHHHHHHHHHcCCC--chhhhhhhhheeeH
Confidence 334445678999999998765 368899999999999999999999997643 2344 35678899999999
Q ss_pred hhHhhhhhcHHHHHHHcccccCCCC
Q 047772 405 LTVLLIGGSTGTMLEALQVVGDAHD 429 (498)
Q Consensus 405 ~T~~i~g~~~~~l~~~l~~~~~~~~ 429 (498)
+|+++||.+++++.|+++++.+++.
T Consensus 374 ~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 374 VSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred HHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 9999999999999999999766544
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=9e-43 Score=371.65 Aligned_cols=369 Identities=18% Similarity=0.216 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCCcCChHHHHHHHHHHHHHh-hhccCcccccccccccChhhhhhcccccchHHh
Q 047772 26 GVGILLQIMMLVLSFVLGHVLR-RHKFYYLPEASASLLIGLIVGAL-ANISNTETNISAYLLLDFEFYLQHFSFLDSFRH 103 (498)
Q Consensus 26 ~~~il~~~~lL~~~~~~~~l~~-~~~~~~iP~~~~~ll~GiilG~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~il 103 (498)
++.++.++.++++..+++.+++ |.+ +|++++++++|+++||. .+..++.. +.+...+..+ +. +++|++++
T Consensus 12 ~l~~~~lG~~lll~~l~s~~lkeRl~---Ls~~~v~Ll~GiilGP~~l~~idP~~-~g~~d~i~le-It---eIvL~I~L 83 (810)
T TIGR00844 12 HVAYSCVGIFSSIFSLVSLFVKEKLY---IGESMVASIFGLIVGPHCLNWFNPLS-WGNTDSITLE-IS---RILLCLQV 83 (810)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHhhhhhhccCChhh-cccchHHHHH-HH---HHHHHHHH
Confidence 3467778888888888888888 776 99999999999999984 33333221 1100111122 45 79999999
Q ss_pred hhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHH---hh
Q 047772 104 TQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQ---EL 180 (498)
Q Consensus 104 F~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~---~~ 180 (498)
|.+|+++++++++++|+.+..++++++.++++++++++| +++++++|..|+++|||++||||+++.++++ ..
T Consensus 84 Fa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~-----~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~ 158 (810)
T TIGR00844 84 FAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVW-----ILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQ 158 (810)
T ss_pred HHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999888 2458999999999999999999999999998 45
Q ss_pred CCChhhHHHHhhhcccchhhHHHHHHHHHHHHccCC-cc-h--HH--HHHHHH-----HHHHHHHhc----c--------
Q 047772 181 GTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHAS-SG-Q--NF--FMVIVR-----FLETFVGSI----L-------- 237 (498)
Q Consensus 181 ~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~-~~-~--~~--~~~i~~-----~l~~~~g~~----~-------- 237 (498)
++|++++.++.+||++||++|++++.+.+.+..... ++ . .+ ..++.. .++.++|.+ .
T Consensus 159 rvP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~ 238 (810)
T TIGR00844 159 KVPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNI 238 (810)
T ss_pred cCChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 799999999999999999999998887766653211 11 1 11 111111 122222222 1
Q ss_pred --hhhhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 047772 238 --QNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAM 315 (498)
Q Consensus 238 --~~~~~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~ 315 (498)
++....+.+++++.+|.+++.+|.||++|+|+||++++|..+.. .+.....+++.++.+++.++|+++|..++.
T Consensus 239 i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~----~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~ 314 (810)
T TIGR00844 239 IDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFA----QKTHESNVSNVIDVLLNYAYFVYLGSILPW 314 (810)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchh----hhHHHhhHHHHHHHHHHHHHHHHHHHhhCH
Confidence 11235577888999999999999999999999999999876531 122346699999999999999999999865
Q ss_pred ccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhccCCC--
Q 047772 316 EKH-----SWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLP-- 388 (498)
Q Consensus 316 ~~~-----~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~~~~~-- 388 (498)
... .+..|..+++.++++++.|+++++.+..+. +...+|+|+.+++|.|+||+.++..+.......+
T Consensus 315 ~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li------~~~~s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~ 388 (810)
T TIGR00844 315 KDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLI------PDIKSWREAMFIGHFGPIGVGAVFAAILSKSQLESH 388 (810)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccCCCHHHHHHheeeccccHHHHHHHHHHHHhhhcc
Confidence 432 234467778888889999999888765432 3456899999999999999999988766532211
Q ss_pred --c----------c------chhhHHhhhhhhehhhHhhhhhcHHHH
Q 047772 389 --E----------G------HGQTIFSATTVIVVLTVLLIGGSTGTM 417 (498)
Q Consensus 389 --~----------~------~~~~i~~~~~~vvl~T~~i~g~~~~~l 417 (498)
. + ..+.+..+|.++|++|+++||.+.+++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l 435 (810)
T TIGR00844 389 LTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVI 435 (810)
T ss_pred cCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHH
Confidence 1 0 035789999999999999999999876
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-41 Score=330.19 Aligned_cols=366 Identities=20% Similarity=0.282 Sum_probs=302.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcc-cccchHHhhhh
Q 047772 29 ILLQI-MMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHF-SFLDSFRHTQS 106 (498)
Q Consensus 29 il~~~-~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~L~~ilF~~ 106 (498)
+++.. ++.+.+.+.+.+..|++ +|-.+..+.+|++.|.-.- ..+++|..-+.... .++|.+|+|++
T Consensus 8 ill~gsvlvivsif~s~~ssrfG---vP~LllFl~iGm~aG~dGl---------g~I~fdNy~~Ay~vg~lALaiILfdg 75 (574)
T COG3263 8 ILLLGSVLVIVSIFSSLISSRFG---VPLLLLFLSIGMLAGVDGL---------GGIEFDNYPFAYMVGNLALAIILFDG 75 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHHcCCCcc---------cccccCccHHHHHHHHHHHHHHhhcC
Confidence 34444 66677788899999999 9999999999999984110 11233433333222 78999999999
Q ss_pred hhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhh
Q 047772 107 GFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNL 186 (498)
Q Consensus 107 G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l 186 (498)
|+..+++.+|...++.+.++.+|+++++.++|..++ +.++++|.+++++||++.+||.++|.+++++.++++|+
T Consensus 76 G~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~------~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv 149 (574)
T COG3263 76 GFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAA------YLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERV 149 (574)
T ss_pred ccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------HHhccHHHHHHHHHHhhccccHHHHHHHHccCChhhhh
Confidence 999999999999999999999999999999999988 68999999999999999999999999999999999999
Q ss_pred HHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHH---HHHHHHH-HHHHHhc--------------chhhhHHHHHHH
Q 047772 187 YALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFF---MVIVRFL-ETFVGSI--------------LQNLECCLFVLF 248 (498)
Q Consensus 187 ~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~---~~i~~~l-~~~~g~~--------------~~~~~~~~~l~~ 248 (498)
+++++-||.-||.+|+.+...++.+.....++.++. ..+.++. +..+|.. .+...+++.++.
T Consensus 150 ~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~ 229 (574)
T COG3263 150 ASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAG 229 (574)
T ss_pred hhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 999999999999999999888888765433333332 2222321 1222211 234678999999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHH
Q 047772 249 PYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFF 328 (498)
Q Consensus 249 ~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~ 328 (498)
.++.|.+++.+|.||++|+++||++.+|...++ |+.+.++++-++++++...|+.+|+.+...+..-..++.+++
T Consensus 230 ~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~-----r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL 304 (574)
T COG3263 230 GLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRA-----RHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILL 304 (574)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHhCCCcchh-----HHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHH
Confidence 999999999999999999999999999876654 788999999999999999999999998766543234567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhc-cCCCccchhhHHhhhhhhehhhH
Q 047772 329 SILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSV-HDLPEGHGQTIFSATTVIVVLTV 407 (498)
Q Consensus 329 ~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~-~~~~~~~~~~i~~~~~~vvl~T~ 407 (498)
.+..++++|++++|++.. +.+.+++|+.+.+|.|+||++++.+|..+. .+++ ..+.++++.+++|+.|.
T Consensus 305 ~l~mifvaRP~aV~l~l~--------Pfrf~~~Ek~fvSWvGLRGAv~IilAifpm~agle--na~l~FNvAF~VVLvSl 374 (574)
T COG3263 305 SLWMIFVARPLAVFLGLI--------PFRFNRREKLFVSWVGLRGAVPIILAIFPMMAGLE--NARLFFNVAFFVVLVSL 374 (574)
T ss_pred HHHHHHHHhHHHHHHhhc--------ccccCccchheeehhhcccchhhhHhhhHHhcCCc--cceEEeehhHHHHHHHH
Confidence 888899999999998764 357899999999999999999999997654 3455 46899999999999999
Q ss_pred hhhhhcHHHHHHHcccccCC
Q 047772 408 LLIGGSTGTMLEALQVVGDA 427 (498)
Q Consensus 408 ~i~g~~~~~l~~~l~~~~~~ 427 (498)
++||.+.|+..||+++..+.
T Consensus 375 liQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 375 LIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred HHccCcchHHHHhcccccCC
Confidence 99999999999999986554
No 9
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-33 Score=263.88 Aligned_cols=368 Identities=20% Similarity=0.239 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHH-hhhccCcccccccccccChhhhhhcccccchHHhhhh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGA-LANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQS 106 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~ 106 (498)
.+........+..+++.++|++- ++.|+....+.|+++|| ..+..++... .+...+ .+.+. .+.|....|.+
T Consensus 14 al~~~g~F~slF~l~S~yikekL--llgEa~va~itGlI~Gphvlnlfdp~~w-gn~d~i-t~ei~---RvvLcvqvfav 86 (467)
T KOG4505|consen 14 ALAASGGFVSLFGLASLYIKEKL--LLGEATVAVITGLIFGPHVLNLFDPNSW-GNKDYI-TYEIS---RVVLCVQVFAV 86 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhH--hccchHHhhhhheeechhhhhhcCCccc-cCcchh-hhhhh---hhhHhHHHHHH
Confidence 44555556666667777887754 59999999999999999 4555544322 222112 22344 79999999999
Q ss_pred hhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhh----CC
Q 047772 107 GFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQEL----GT 182 (498)
Q Consensus 107 G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~----~~ 182 (498)
+.|++..++.++|++++.+..+.+++.+++.+..+| .+.+++++..+++++++++||||+...++..+- ++
T Consensus 87 a~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy-----~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrv 161 (467)
T KOG4505|consen 87 AMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVY-----ALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRV 161 (467)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhC
Confidence 999999999999999999999999999999999998 357899999999999999999999999999632 48
Q ss_pred ChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCc---chHHH------HH-HHHHHHHHHHhc--------------ch
Q 047772 183 DMNLYALVFGESVLNDAMAISLYRTMSLVRSHASS---GQNFF------MV-IVRFLETFVGSI--------------LQ 238 (498)
Q Consensus 183 ~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~---~~~~~------~~-i~~~l~~~~g~~--------------~~ 238 (498)
|+|+++++..||.+||++|++++...+.+..+... +-.|. .. .+-+++.++|.+ ++
T Consensus 162 PeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~ 241 (467)
T KOG4505|consen 162 PERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDR 241 (467)
T ss_pred hHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999998888887655322 22221 11 112334444443 24
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 047772 239 NLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKH 318 (498)
Q Consensus 239 ~~~~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~ 318 (498)
+....+-+.+++++.++.+.+|.+.++-.|++|+++++.++... +.+..+..+.++.+++..||+|.|..++.+++
T Consensus 242 eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk----~t~~s~v~~viD~lls~sfF~yfGaiipwsqF 317 (467)
T KOG4505|consen 242 ESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSK----KTKESRVSEVIDLLLSLSFFLYFGAIIPWSQF 317 (467)
T ss_pred HHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhh----hhhhccHHHHHHHHHHHHHHHHhccccchhhc
Confidence 45567778899999999999999999999999999999887643 23345677888899999999999999997766
Q ss_pred chh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhccCC----C-
Q 047772 319 SWS-----HLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDL----P- 388 (498)
Q Consensus 319 ~~~-----~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~~~~----~- 388 (498)
+|+ .|..+++.+..++..|+..+++..++.+.+| +|||+.+.+|.|+-|+.|+..|+.....+ |
T Consensus 318 n~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdik------swkEALFvGhFGPIGVgAly~allar~~le~~ep~ 391 (467)
T KOG4505|consen 318 NLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIK------SWKEALFVGHFGPIGVGALYYALLARKELETLEPE 391 (467)
T ss_pred CCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchh------hHHHHHHhccCCCccHHHHHHHHHHHhhhccCCcc
Confidence 544 5788999999999999999998877665544 89999999999999999998887643111 1
Q ss_pred ----cc------chhhHHhhhhhhehhhHhhhhhcHHHH
Q 047772 389 ----EG------HGQTIFSATTVIVVLTVLLIGGSTGTM 417 (498)
Q Consensus 389 ----~~------~~~~i~~~~~~vvl~T~~i~g~~~~~l 417 (498)
+. -.+.+...+..+|+.|+++||.+.+..
T Consensus 392 ~~i~~~e~~~w~li~~iwpivsf~vlsSIiVHG~sv~~~ 430 (467)
T KOG4505|consen 392 KSIYESETVFWTLIEIIWPIVSFTVLSSIIVHGSSVAMY 430 (467)
T ss_pred cccCCccccchhhhhhhhhhhHHHHHHHHHhccchhhHH
Confidence 10 124678888899999999999998854
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=7.7e-35 Score=300.33 Aligned_cols=353 Identities=23% Similarity=0.392 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhc-cCcccccccccccChhhhhhcccccchHHhhhhhhCCCc
Q 047772 34 MMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANI-SNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSP 112 (498)
Q Consensus 34 ~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~ 112 (498)
+++.++.+.+.++||.+ +|++++++++|+++|+.... .++. ....+.+. ++++++++|.+|+|+|.
T Consensus 3 lli~~~~~~~~l~~r~~---iP~~i~~i~~Gi~lg~~~~~~~~~~-------~~~~~~l~---~i~l~~llF~~G~~~d~ 69 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLG---IPSIIGYILVGIVLGPSGLGLLEPD-------NPSFELLA---EIGLAFLLFEAGLELDI 69 (380)
T ss_dssp -------------------------------------------------------S-SSH---HHHS--SSHHHHTTGGG
T ss_pred EEeehHHHHHHHHHHhC---CCHHHHHHHheeehhhhhhhhccch-------hhHHHHHH---HHHHHHHHHHHHHhhcc
Confidence 34455666677899999 99999999999999986543 2211 12344667 89999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHH-hhCCChhhHHHHh
Q 047772 113 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQ-ELGTDMNLYALVF 191 (498)
Q Consensus 113 ~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~-~~~~~~~l~~ll~ 191 (498)
+++||++++.+..++.++.++..+++...++. ....++++.+++++|+++++|||+.+.++++ +.+.+++.++++.
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~ 146 (380)
T PF00999_consen 70 KELRRNWRRALALGLVGFLLPFILVGFLLSFF---LFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLL 146 (380)
T ss_dssp G----------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHT
T ss_pred cccccccccccccccceeeehhhHHHHHHHHh---hccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhh
Confidence 99999999999999999999988867766510 0157899999999999999999999999995 4558999999999
Q ss_pred hhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH---------HHhc----------chhhhHHHHHHHHHHH
Q 047772 192 GESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETF---------VGSI----------LQNLECCLFVLFPYFS 252 (498)
Q Consensus 192 gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~---------~g~~----------~~~~~~~~~l~~~~~~ 252 (498)
+|+.+||.++++++.++...... ....+.......++... .+.+ .++.+...++++++..
T Consensus 147 ~~~~i~d~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (380)
T PF00999_consen 147 SESVINDIIAIILLSILISLAQA-SGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLL 225 (380)
T ss_dssp TTTTTTTTTTTTTT------------------------------------------------------------------
T ss_pred hhchhhccchhhhhhhhhhhhcc-cccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhh
Confidence 99999999999999998887622 11222222222222111 1111 1134578889999999
Q ss_pred HHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc--hhHHHHHHHHH
Q 047772 253 YMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHS--WSHLGFIFFSI 330 (498)
Q Consensus 253 ~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~--~~~~~~~~~~~ 330 (498)
|+++|.+|.|+++++|++|+++++...++ +.+++.+.+++ .+++++||+++|+.++.+... .+.+...+...
T Consensus 226 ~~~a~~~g~s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~ 299 (380)
T PF00999_consen 226 YGLAEILGLSGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLL 299 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhcccccccccccchhhhhhHHHHH
Confidence 99999999999999999999999544332 12223344443 899999999999999866542 55566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCc-chhHHHHHHhhhccC-CCccchhhHHhhhhhhehhhHh
Q 047772 331 LFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL-RGAMAFALALQSVHD-LPEGHGQTIFSATTVIVVLTVL 408 (498)
Q Consensus 331 ~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-rG~valala~~~~~~-~~~~~~~~i~~~~~~vvl~T~~ 408 (498)
+..++.|+++++..++. .+.++|++..+++++. ||.++++++...... .. .+.+...+..++++|++
T Consensus 300 ~~~~~~k~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~---~~~~~~~~~~~vl~t~i 368 (380)
T PF00999_consen 300 IAILLGKFIGVYLASRL--------FGIPWKEALFIGLGMLPRGEVSLALALIALNLGII---SEQMFTIIIAAVLLTII 368 (380)
T ss_dssp -------------------------------HHHHTTTTSS--HHHHHHHHHHHHH------------------------
T ss_pred HHHHHhhhceeehhhhh--------cccccchhHHHHHhhcCccHHHHHHHHHHHhcCCC---CHHHHHHheeeeeeHHH
Confidence 77889999999888774 4789999999999998 999999999775532 22 23448888889999999
Q ss_pred hhhhcHHHHHHH
Q 047772 409 LIGGSTGTMLEA 420 (498)
Q Consensus 409 i~g~~~~~l~~~ 420 (498)
++|.+.++++||
T Consensus 369 i~~~~~~~l~~~ 380 (380)
T PF00999_consen 369 IAGIILSPLLRK 380 (380)
T ss_dssp ------------
T ss_pred HHHHHHHHHhcC
Confidence 999999998876
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.98 E-value=2.3e-30 Score=279.96 Aligned_cols=395 Identities=14% Similarity=0.197 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHh-hhccCcccccccccccChhhhhhcccccchHHhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGAL-ANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSG 107 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G 107 (498)
+..+.+++..+.+...+++|+| +|.+++++++|+++||. ++..+... +-+.+. ++++.+++|..|
T Consensus 7 ~~~~~~~l~~a~~~~~l~~rl~---~p~ilg~ilaGillGP~~lg~i~~~~--------~i~~la---elGvv~LLF~iG 72 (601)
T PRK03659 7 LTAGVLFLFAAVVAVPLAQRLG---IGAVLGYLLAGIAIGPWGLGFISDVD--------EILHFS---ELGVVFLMFIIG 72 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHhccccccCCCcHH--------HHHHHH---HHHHHHHHHHHH
Confidence 4456677778888899999999 99999999999999984 33322110 112455 899999999999
Q ss_pred hCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC-CChhh
Q 047772 108 FSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG-TDMNL 186 (498)
Q Consensus 108 ~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~-~~~~l 186 (498)
+|+|++++|+.++.++.++..++++++++++...+ .++++|..++++|..++.|+++.+.++++|.+ .+++.
T Consensus 73 Lel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~-------~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~ 145 (601)
T PRK03659 73 LELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLM-------LTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSES 145 (601)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 99999999999999999999999998877766554 35889999999999999999999999999999 56678
Q ss_pred HHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHH---HHHHHHHHHHhc--------------chhhhHHHHHHHH
Q 047772 187 YALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMV---IVRFLETFVGSI--------------LQNLECCLFVLFP 249 (498)
Q Consensus 187 ~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~---i~~~l~~~~g~~--------------~~~~~~~~~l~~~ 249 (498)
+++..+..++||..+++++.++..+.........+... +..++..++++. .++.....++.++
T Consensus 146 G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~v 225 (601)
T PRK03659 146 GQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLV 225 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999999998888876665322111122211 111222222211 1244456667777
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHH
Q 047772 250 YFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFS 329 (498)
Q Consensus 250 ~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~~ 329 (498)
+++.+++|.+|+|+++|+|++|+++++... +++.+...+.+..++.++||+.+|+.++.... +..+..++..
T Consensus 226 l~~a~l~~~~Gls~~LGAFlaGl~l~~s~~-------~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l-~~~~~~il~~ 297 (601)
T PRK03659 226 LGSALFMDALGLSMALGTFIAGVLLAESEY-------RHELEIAIEPFKGLLLGLFFISVGMALNLGVL-YTHLLWVLIS 297 (601)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH-HHhHHHHHHH
Confidence 888889999999999999999999997432 44556666667788999999999999887543 2334455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheecc-CcchhHHHHHHhhhc-cC-CCccchhhHHhhhhhhehhh
Q 047772 330 ILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYS-GLRGAMAFALALQSV-HD-LPEGHGQTIFSATTVIVVLT 406 (498)
Q Consensus 330 ~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~rG~valala~~~~-~~-~~~~~~~~i~~~~~~vvl~T 406 (498)
.+..++.|++.+++..+. .+.+++++..++.. ..||..++.++.... .+ ++.+....+..++..++++|
T Consensus 298 ~~~~l~~K~~~~~~~~~~--------~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~t 369 (601)
T PRK03659 298 VVVLVAVKGLVLYLLARL--------YGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTT 369 (601)
T ss_pred HHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 677789999999988775 47788888776643 558888887765432 12 22222223333333333344
Q ss_pred HhhhhhcHHHHHHHcccccCCCCCCCCCcccCCCCCCCC--CCCCCCCcchhHHHHHHhhhh
Q 047772 407 VLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAP--YDEGSTSGNKLKMKLKEFRKS 466 (498)
Q Consensus 407 ~~i~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 466 (498)
.++....-+++.|+++...+ ... . +..++..+| .++.++.++.+.+.+++.+.+
T Consensus 370 P~l~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~ 425 (601)
T PRK03659 370 PLLMKLIDKWLARRLNGPEE--EDE-K---PWVEDDKPQVIIVGFGRFGQVIGRLLMANKMR 425 (601)
T ss_pred HHHHHHhHHHHHHhhccccc--ccc-c---cccccccCCEEEecCchHHHHHHHHHHhCCCC
Confidence 44443333333343321111 000 0 000111223 567888888888887765443
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.97 E-value=3.2e-30 Score=279.18 Aligned_cols=392 Identities=14% Similarity=0.141 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHh-hhccCcccccccccccChhhhhhcccccchHHhhhh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGAL-ANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQS 106 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~ 106 (498)
.+..+.+++..+.+...++||+| +|.+++|+++|+++||. ++..+... +-+.+. ++++.+++|.+
T Consensus 6 ~l~~~~~~l~~a~i~~~l~~rl~---lp~vlgyilaGillGP~~lg~i~~~~--------~i~~la---elGvv~LlF~i 71 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIAVRLG---LGSVLGYLIAGCIIGPWGLRLVTDVE--------SILHFA---EFGVVLMLFVI 71 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHhCcccccCCCCHH--------HHHHHH---HHHHHHHHHHH
Confidence 45677788888899999999999 99999999999999984 33321110 122455 89999999999
Q ss_pred hhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC-CChh
Q 047772 107 GFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG-TDMN 185 (498)
Q Consensus 107 G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~-~~~~ 185 (498)
|+|+|++++|++++.++.++..++++++.+++...+ .++++|..++++|++++.|+++.++++++|.+ .+++
T Consensus 72 GLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~-------~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~ 144 (621)
T PRK03562 72 GLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCM-------LLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQ 144 (621)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 999999999999999999999999988877665544 56889999999999999999999999999998 6888
Q ss_pred hHHHHhhhcccchhhHHHHHHHHHHHHccCCc-c-hHHHH----HHHHHHHHHHHhc--------------chhhhHHHH
Q 047772 186 LYALVFGESVLNDAMAISLYRTMSLVRSHASS-G-QNFFM----VIVRFLETFVGSI--------------LQNLECCLF 245 (498)
Q Consensus 186 l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~-~-~~~~~----~i~~~l~~~~g~~--------------~~~~~~~~~ 245 (498)
.++...+..++||..+++++.++..+...... + ...+. .+..+...++++. .++.....+
T Consensus 145 ~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~ 224 (621)
T PRK03562 145 MGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVA 224 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 99999999999999999998887766432111 1 11111 1111111122111 123445667
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHH
Q 047772 246 VLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGF 325 (498)
Q Consensus 246 l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~ 325 (498)
+.+++++.+++|.+|+|+.+|+|++|+++++... +++.+...+.+..++.++||+.+|+.++..... ..+..
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~-------~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~-~~~~~ 296 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEY-------RHALESDIEPFKGLLLGLFFIAVGMSIDFGTLL-ENPLR 296 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH-HHHHH
Confidence 7888889999999999999999999999996433 455667777777889999999999998875432 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCc-chhHHHHHHhhhc-cC-CCccchhhHHhhhhhh
Q 047772 326 IFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL-RGAMAFALALQSV-HD-LPEGHGQTIFSATTVI 402 (498)
Q Consensus 326 ~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-rG~valala~~~~-~~-~~~~~~~~i~~~~~~v 402 (498)
++..++..++.|+++++..++. .+.+++++..+++... +|..++.++.... .+ ++ +.......++
T Consensus 297 il~~~~~~~~~K~~~~~~~~~~--------~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~----~~~~~~lv~~ 364 (621)
T PRK03562 297 ILILLLGFLAIKIAMLWLLARP--------LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLE----PEWAKLLTLA 364 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCC----HHHHHHHHHH
Confidence 4445556789999999988775 4778888888776543 7777777664322 11 22 3334444445
Q ss_pred ehhhHhhhhhcHHHHHHHcccccCCCCCCCCCcccCCCCCCCC--CCCCCCCcchhHHHHHHhhh
Q 047772 403 VVLTVLLIGGSTGTMLEALQVVGDAHDGHLGENFEGNNGYAAP--YDEGSTSGNKLKMKLKEFRK 465 (498)
Q Consensus 403 vl~T~~i~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 465 (498)
+++|+++.+......-|+...+.... . .++ +. ++..+| .++.++.+|...+.+++.+.
T Consensus 365 v~lS~~~tP~l~~~~~~~~~~~~~~~-~--~~~-~~-~~~~~~vII~G~Gr~G~~va~~L~~~g~ 424 (621)
T PRK03562 365 VALSMAATPLLLVLLDRLEQSRTEEA-R--EAD-EI-DEQQPRVIIAGFGRFGQIVGRLLLSSGV 424 (621)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhc-c--ccc-cc-ccccCcEEEEecChHHHHHHHHHHhCCC
Confidence 55565553332211111111000000 0 000 00 111122 46788888888887776543
No 13
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.7e-29 Score=254.37 Aligned_cols=358 Identities=19% Similarity=0.260 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHH-hhhccCcccccccccccChhhhhhcccccchHHhhhh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGA-LANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQS 106 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~ 106 (498)
.+..+.+++.++.+.++++||.| +|.+++++++|+++|| ......... -.-+.+. ++++.++||.+
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl~---lp~vlg~llaGiilGp~~~~~~~~~~-------~~i~~la---elGvi~LlF~~ 73 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRLG---LPPVLGYLLAGIILGPWGLLLIIESS-------EIIELLA---ELGVVFLLFLI 73 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCcccccccCCch-------HHHHHHH---HHhHHHHHHHH
Confidence 56778888899999999999999 9999999999999998 222221110 0112456 89999999999
Q ss_pred hhCCCchhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC-CCh
Q 047772 107 GFSLSPKPFFSNFGA-IVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG-TDM 184 (498)
Q Consensus 107 G~~l~~~~l~~~~~~-i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~-~~~ 184 (498)
|+|.|.+++||++++ .+..+..+...+..+.....+ . .+++++..++++|++++.||...+.++++|+| .++
T Consensus 74 GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~-~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~ 147 (397)
T COG0475 74 GLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLL-----G-ILGLSLIAALFLGAALALSSTAIVLKILMELGLLKT 147 (397)
T ss_pred HHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHH-----H-HhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999 555555555554333322222 1 47899999999999999999999999999988 788
Q ss_pred hhHHHHhhhcccchhhHHHHHHHHHHHHccCCcch-HHHHHHHH---HH--HHHHHhc-------------chhhhHHHH
Q 047772 185 NLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQ-NFFMVIVR---FL--ETFVGSI-------------LQNLECCLF 245 (498)
Q Consensus 185 ~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~-~~~~~i~~---~l--~~~~g~~-------------~~~~~~~~~ 245 (498)
+.++++.+..+++|..+++++.++..+..++.... .+...+.. +. ....|.. .++.....+
T Consensus 148 ~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~ 227 (397)
T COG0475 148 REGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFV 227 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999876533221 12222211 11 1111211 234567888
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhccccchhHHH
Q 047772 246 VLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISS-LAETFVFIYMGFDIAMEKHSWSHLG 324 (498)
Q Consensus 246 l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~F~~iG~~l~~~~~~~~~~~ 324 (498)
+.+++...+++|.+|.|.++++|.+|+++++..++ +++.++..+.+.+ ++-++||+.+|+.++...... .+.
T Consensus 228 l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~------~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~-~~~ 300 (397)
T COG0475 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYR------KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE-NLL 300 (397)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccc------hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc-cHH
Confidence 99999999999999999999999999999976553 2467777788888 999999999999998775433 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCc-chhHHHHHHhhhccCCCccchhhHHhhhhhhe
Q 047772 325 FIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL-RGAMAFALALQSVHDLPEGHGQTIFSATTVIV 403 (498)
Q Consensus 325 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-rG~valala~~~~~~~~~~~~~~i~~~~~~vv 403 (498)
.++......++.|....+...+.. +.+++++...++..- ||..+++++-.... ....+.++..+..+.
T Consensus 301 ~~l~~~~~~i~~K~~~~~~~~~~~--------g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~---~~i~~~~~~~~v~~s 369 (397)
T COG0475 301 LILLLVALAILGKILGAYLAARLL--------GFSKRLALGIGLLLRQGGEFAFVLAGIALG---SAISEALLTAVVILS 369 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------cCcHHHHHHHHhhhhhhhHHHHHHHHhccc---chhHHHHHHHHHHHH
Confidence 567777888999999999988864 355666666554433 66766666643221 123455555555555
Q ss_pred hhhHhhhhhcHHHHHHHcc
Q 047772 404 VLTVLLIGGSTGTMLEALQ 422 (498)
Q Consensus 404 l~T~~i~g~~~~~l~~~l~ 422 (498)
++++.+.....|.+.|+..
T Consensus 370 mi~t~i~~~~~~~~~~~~~ 388 (397)
T COG0475 370 MITTPILPLLTPILLKRLL 388 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666665556666666543
No 14
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.96 E-value=1.5e-27 Score=257.14 Aligned_cols=397 Identities=15% Similarity=0.118 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhh-hccCcccccccccccChhhhhhcccccchHHhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALA-NISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSG 107 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G 107 (498)
+..+.++++.+.+++.++||+| +|.+++++++|+++||.. +.... ....+.+. ++++.+++|.+|
T Consensus 8 ~~~~~~~l~~a~~~~~l~~rl~---~P~ivg~IlaGillGp~~lg~~~~--------~~~~~~la---~lGli~llF~~G 73 (558)
T PRK10669 8 ITTIVGGLVLAFILGMLANRLR---ISPLVGYLLAGVLAGPFTPGFVAD--------TKLAPELA---ELGVILLMFGVG 73 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHhhCccccccccc--------hHHHHHHH---HHHHHHHHHHhH
Confidence 4455778888999999999999 999999999999999843 22111 11123566 899999999999
Q ss_pred hCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC-CChhh
Q 047772 108 FSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG-TDMNL 186 (498)
Q Consensus 108 ~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~-~~~~l 186 (498)
+|+|+++++|+++.....+..+++++.++. ...+ +.+++++..++++|++++.|+++.+.++++|.| .+++.
T Consensus 74 le~d~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 74 LHFSLKDLMAVKSIAIPGAIAQIAVATLLG-MALS------AVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQR 146 (558)
T ss_pred hcCCHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHH------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 999999999998776666666666655443 3332 356899999999999999999999999999999 78889
Q ss_pred HHHHhhhcccchhhHHHHHHHHHHHHcc---CCcch-H----HHHHHHHHHH-----HHHHhc-----c--------hhh
Q 047772 187 YALVFGESVLNDAMAISLYRTMSLVRSH---ASSGQ-N----FFMVIVRFLE-----TFVGSI-----L--------QNL 240 (498)
Q Consensus 187 ~~ll~gEs~lnD~~aivl~~~~~~~~~~---~~~~~-~----~~~~i~~~l~-----~~~g~~-----~--------~~~ 240 (498)
++++.+.+++||..+++++.++..+... +.... . ....+...+. .+++.. . ++.
T Consensus 147 G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 226 (558)
T PRK10669 147 GQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSREL 226 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 9999999999999999888877665421 11111 1 1111111111 011111 0 122
Q ss_pred hHHHHHHHHHHHH-HHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 047772 241 ECCLFVLFPYFSY-MLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHS 319 (498)
Q Consensus 241 ~~~~~l~~~~~~~-~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~ 319 (498)
.....+.++++.. ..+|.+|+|+++|+|++|+++++... .+...+....+..++.++||+.+|+.++....
T Consensus 227 ~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~-------~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l- 298 (558)
T PRK10669 227 FTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESEL-------SHRAAHDTLPLRDAFAVLFFVSVGMLFDPMIL- 298 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChh-------HHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHH-
Confidence 2333445555443 45699999999999999999986322 12232223345677899999999999876543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCc-chhHHHHHHhhhcc-CCCccchhhHHh
Q 047772 320 WSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL-RGAMAFALALQSVH-DLPEGHGQTIFS 397 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-rG~valala~~~~~-~~~~~~~~~i~~ 397 (498)
++.+..++..++..+++|+++++..++. .+.++|++...+.+-. ||..++.++..... +. ..+..+.
T Consensus 299 ~~~~~~~~~~~~~~~v~K~~~~~~~~~~--------~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gi---i~~~~~~ 367 (558)
T PRK10669 299 IQQPLAVLATLAIIVFGKSLAAFFLVRL--------FGHSRRTALTIAASLAQIGEFAFILAGLGMALNL---LPQAGQN 367 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCChhhHHHHHHHHhcccchHHHHHHHHHhCCC---CCHHHHH
Confidence 2223344445566788999988887775 4678898888876644 88888887765332 11 2345555
Q ss_pred hhhhhehhhHhhhhhcHHHHHHHcccccCCCCCCCCC--cc--cCCCCCCCC--CCCCCCCcchhHHHHHHhhh
Q 047772 398 ATTVIVVLTVLLIGGSTGTMLEALQVVGDAHDGHLGE--NF--EGNNGYAAP--YDEGSTSGNKLKMKLKEFRK 465 (498)
Q Consensus 398 ~~~~vvl~T~~i~g~~~~~l~~~l~~~~~~~~~~~~~--~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 465 (498)
.+..++++|+++.+......-|+.........+...+ ++ +.+++..+| .++.++.++++.+.+++.+.
T Consensus 368 ~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~~~g~ 441 (558)
T PRK10669 368 LVLAGAILSIMLNPVLFTLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLAAGI 441 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhccccccccccccccccccccCCCEEEECCChHHHHHHHHHHHCCC
Confidence 6666667777775554443333322111111110001 00 111111223 45677788888887776543
No 15
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.95 E-value=9.4e-26 Score=250.76 Aligned_cols=333 Identities=15% Similarity=0.178 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhh-hccCc-cccc-ccccccChhhhhhcccccchHHhh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALA-NISNT-ETNI-SAYLLLDFEFYLQHFSFLDSFRHT 104 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~-~~~~~-~~~i-~~~~~~~~~~~~~~~~~~L~~ilF 104 (498)
-++.+.++++++.+++.++||+| +|.+++++++|+++||.. +..+. ...+ +......-+.+. ++++.++||
T Consensus 44 ~llql~lil~~a~l~~~ll~rl~---~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la---~lGlillmF 117 (832)
T PLN03159 44 FILQLTLVVVTTRLLVFILKPFR---QPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMA---NLGLLYFLF 117 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHH---HHHHHHHHH
Confidence 34566788889999999999999 999999999999999943 33211 0000 000000123455 899999999
Q ss_pred hhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc-CcHHHHHHhccccCCcchHHHHHHHHhhC-C
Q 047772 105 QSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYR-LPFVECLMFGALISATDPVTVLSIFQELG-T 182 (498)
Q Consensus 105 ~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~all~gailsaTdpv~v~~il~~~~-~ 182 (498)
.+|+|+|.+.+||+++..+..++.+++++.++...+.++.+. .... .....++++|.++|.|+..++.++++|+| .
T Consensus 118 liGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~--~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll 195 (832)
T PLN03159 118 LVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ--VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLI 195 (832)
T ss_pred HHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcc
Confidence 999999999999999999999999998887665444432110 0000 12345788999999999999999999999 6
Q ss_pred ChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHH-HHHHHHHH---------hc---c------hhhhHH
Q 047772 183 DMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIV-RFLETFVG---------SI---L------QNLECC 243 (498)
Q Consensus 183 ~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~-~~l~~~~g---------~~---~------~~~~~~ 243 (498)
+++.+++..+.+++||.++++++.++..+.............+. ..+...+. .+ . ++....
T Consensus 196 ~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~ 275 (832)
T PLN03159 196 NTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYIC 275 (832)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhH
Confidence 88999999999999999999999888776543222221211111 11100000 00 1 123455
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-hhH
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHS-WSH 322 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~-~~~ 322 (498)
+++++.+++.+++|.+|+|.++|+|++|+++.+. +. .+...+.+-.....++.++||+++|+.++..... ...
T Consensus 276 ~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~-----~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~ 349 (832)
T PLN03159 276 LILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PL-----GVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPAT 349 (832)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-ch-----HHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchH
Confidence 6777778889999999999999999999999852 11 1222344444446788999999999998865432 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCc-chhHHHHHHhh
Q 047772 323 LGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL-RGAMAFALALQ 382 (498)
Q Consensus 323 ~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-rG~valala~~ 382 (498)
+..++++++..+++|+++.++.+++ .++++++...++...- ||.+.++++..
T Consensus 350 ~~~~~~liv~a~~gK~~g~~l~a~~--------~g~~~~eal~lG~lm~~kG~~~Lii~~i 402 (832)
T PLN03159 350 WGLLVLVIIMASAGKIMGTIIIAFF--------YTMPFREGITLGFLMNTKGLVEMIVLNV 402 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4445555666788999988888775 5889999999887754 99999988754
No 16
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.94 E-value=8.1e-26 Score=222.56 Aligned_cols=250 Identities=16% Similarity=0.291 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhh-hccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhh
Q 047772 37 VLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALA-NISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPF 115 (498)
Q Consensus 37 ~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l 115 (498)
+.+.+.+.++||.| +|++++++++|+++||.. +..+.. + .-+.+. ++++.+++|.+|+|+|++++
T Consensus 2 ~~a~~~~~l~~~l~---lP~~v~~il~GillGp~~lg~i~~~-------~-~~~~l~---~igl~~llF~~Gl~~d~~~l 67 (273)
T TIGR00932 2 LAAVLAVPLSRRLG---IPSVLGYLLAGVLIGPSGLGLISNV-------E-GVNHLA---EFGVILLMFLIGLELDLERL 67 (273)
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHHhCcccccCCCCh-------H-HHHHHH---HHHHHHHHHHHHhCCCHHHH
Confidence 45678899999999 999999999999999843 322111 0 112445 89999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCC-ChhhHHHHhhhc
Q 047772 116 FSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGT-DMNLYALVFGES 194 (498)
Q Consensus 116 ~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~-~~~l~~ll~gEs 194 (498)
||++++...++..++++++++++...+ +.+++++..|+++|+++++|||..+.++++|.+. +++.++++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~ 141 (273)
T TIGR00932 68 WKLRKAAFGVGVLQVLVPGVLLGLLLG------HLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGIL 141 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHH
Confidence 999999999999999998667666554 3568999999999999999999999999999994 789999999999
Q ss_pred ccchhhHHHHHHHHHHHHccCCc-chHHHHHHHHHH-H----HHHHh-c------------chhhhHHHHHHHHHHHHHH
Q 047772 195 VLNDAMAISLYRTMSLVRSHASS-GQNFFMVIVRFL-E----TFVGS-I------------LQNLECCLFVLFPYFSYML 255 (498)
Q Consensus 195 ~lnD~~aivl~~~~~~~~~~~~~-~~~~~~~i~~~l-~----~~~g~-~------------~~~~~~~~~l~~~~~~~~l 255 (498)
++||.++++++.+.....++... ...+........ . ..++. . .++.+...++.+.+..+.+
T Consensus 142 ~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 221 (273)
T TIGR00932 142 LFQDIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYF 221 (273)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999998877643211 112211111111 0 01111 1 1134567788888999999
Q ss_pred HHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047772 256 AEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDI 313 (498)
Q Consensus 256 ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l 313 (498)
+|.+|.|+++|+|++|+++++... ++...+..+.+..++.++||+++|+.+
T Consensus 222 a~~~g~s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 222 ADLLGLSMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred HHHhCCcHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 999999999999999999997533 233555566666899999999999875
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.3e-16 Score=148.91 Aligned_cols=347 Identities=17% Similarity=0.183 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhh-hccCcccccccccccChhhhhhcccccchHHhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALA-NISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSG 107 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G 107 (498)
+..+...+.++++.+.+..|.| +|+.++|+++|++.||.. ++...+ .+.+ .+. +++...+||-.|
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlr---lsPLVGyL~AGv~~gpftpGFvad~-------~La~-~LA---elGViLLmFgvG 73 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLR---LSPLVGYLLAGVLAGPFTPGFVADQ-------TLAP-ELA---ELGVILLMFGVG 73 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHhcCCCCCCcccch-------hHHH-HHH---HhhHHHHHHhcc
Confidence 5667788899999999999999 999999999999999854 333221 2223 344 899999999999
Q ss_pred hCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC-CChhh
Q 047772 108 FSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG-TDMNL 186 (498)
Q Consensus 108 ~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~-~~~~l 186 (498)
+.++.+++.....- +++|.+....+....-. |+ ....||++...+++|-++|-.+++..++-++|-+ .+.+-
T Consensus 74 LhfslkdLLavk~i----AipgAl~qia~at~lg~--gL-~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~r 146 (408)
T COG4651 74 LHFSLKDLLAVKAI----AIPGALAQIALATLLGM--GL-SSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQR 146 (408)
T ss_pred hheeHHHHhhHHHH----hcchHHHHHHHHHHHHh--HH-HHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence 99999998764433 45665554443333222 11 1367999999999999999999999999998777 77888
Q ss_pred HHHHhhhcccchhhHHHHHHHHHHHHcc---C-CcchH--------HHHHHHHH-HHHHHHhc-------------chhh
Q 047772 187 YALVFGESVLNDAMAISLYRTMSLVRSH---A-SSGQN--------FFMVIVRF-LETFVGSI-------------LQNL 240 (498)
Q Consensus 187 ~~ll~gEs~lnD~~aivl~~~~~~~~~~---~-~~~~~--------~~~~i~~~-l~~~~g~~-------------~~~~ 240 (498)
+++-.|=-+..|...++......++++- . ..... ..+....+ +..++|-. .|+.
T Consensus 147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrEl 226 (408)
T COG4651 147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSREL 226 (408)
T ss_pred ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 9999999999998777666666555431 1 11111 11111111 11222222 3455
Q ss_pred hHHHHHHHHHHH-HHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 047772 241 ECCLFVLFPYFS-YMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHS 319 (498)
Q Consensus 241 ~~~~~l~~~~~~-~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~ 319 (498)
....++.+++.. |..+|.+|.|..+++|++|++++..... ++..+..-.+.+.+..+||+.+||..+.....
T Consensus 227 f~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~esels-------hraa~~slpLrdaFaVlFFvsVGmlf~P~~l~ 299 (408)
T COG4651 227 FTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELS-------HRAAEDSLPLRDAFAVLFFVSVGMLFDPMILI 299 (408)
T ss_pred HHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhh-------HHHHHhccCHHHHHHHHHHHHhhhhcCcHHhh
Confidence 556666666554 5567889999999999999999854331 22223333466788899999999997654321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheecc----CcchhHHHHHHhhhccCCCccchhhH
Q 047772 320 WSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYS----GLRGAMAFALALQSVHDLPEGHGQTI 395 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----G~rG~valala~~~~~~~~~~~~~~i 395 (498)
+....++.+.+.++..|-+..|...+. .+.+.+....++.+ |..+.+-..++... .-+|+..++.+
T Consensus 300 -~~pl~vlatllii~~gKs~aaf~ivr~--------Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l-~llp~~gr~Lv 369 (408)
T COG4651 300 -QQPLAVLATLLIILFGKSVAAFFIVRA--------FGHPVRTALTISASLAQIGEFSFILAGLGIKL-NLLPEAGRDLV 369 (408)
T ss_pred -cchHHHHHHHHHHHhhhHHHHHHHHHH--------hCCcchHHHHHHHHHHhhhhHHHHHHHHhhhh-ccCcHHHHHHH
Confidence 122344556666777787766655443 24455665555433 44444444444332 22554334444
Q ss_pred HhhhhhhehhhHhhhhhcHHHH
Q 047772 396 FSATTVIVVLTVLLIGGSTGTM 417 (498)
Q Consensus 396 ~~~~~~vvl~T~~i~g~~~~~l 417 (498)
+.. -+.+++.++......
T Consensus 370 lag----ailsIl~nPllf~~~ 387 (408)
T COG4651 370 LAG----AILSILLNPLLFALL 387 (408)
T ss_pred HHH----HHHHHHHhHHHHHHH
Confidence 444 445666655544443
No 18
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.4e-13 Score=151.66 Aligned_cols=366 Identities=16% Similarity=0.152 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccC----hhhhhhcccccchHHh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLD----FEFYLQHFSFLDSFRH 103 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~L~~il 103 (498)
-++.+.+++++..++..++|+.+ +|..+..+++|+++||.....+... ....+..+ -+.+. .++..+.+
T Consensus 24 ~~lq~~~i~~~~~~~~~~l~pl~---qp~~~s~il~Gi~lgps~~g~~~~~-~~~~f~~~s~~~l~~~~---~lg~~~f~ 96 (769)
T KOG1650|consen 24 LLLQIILIIVLSRLLHILLKPLG---QPRVISEILAGIILGPSLLGRIPSY-MNTIFPKSSMIVLELLA---NLGFLFFL 96 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHhcchHhhccChhh-hhcccccchHHHHHHHH---HHHHHHHH
Confidence 45677788888899999999999 9999999999999998543322110 00011111 13444 68889999
Q ss_pred hhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc-C----cHHHHHHhccccCCcchHHHHHHHH
Q 047772 104 TQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYR-L----PFVECLMFGALISATDPVTVLSIFQ 178 (498)
Q Consensus 104 F~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~-~----~~~~all~gailsaTdpv~v~~il~ 178 (498)
|..|+++|.+.++|+.++...+++.+++++.............. .... . ....-...+...+.|+-..+..++.
T Consensus 97 Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~ 175 (769)
T KOG1650|consen 97 FLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDT-KADKEDGALFLPFEILFILSAQSITSFPVLARILA 175 (769)
T ss_pred HHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhcccc-ccccccccccccHHHHHHHHHhhcchhHHHHHHHH
Confidence 99999999999999999999999888888765433333211000 0111 1 1114456667888888888889999
Q ss_pred hhC-CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCc-c-hHHHHHHHHHHHHHHHhc------------------c
Q 047772 179 ELG-TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASS-G-QNFFMVIVRFLETFVGSI------------------L 237 (498)
Q Consensus 179 ~~~-~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~-~-~~~~~~i~~~l~~~~g~~------------------~ 237 (498)
|++ ..++++++....+++||..++.++.....+.+.... . ...+..+.......+... .
T Consensus 176 eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~ 255 (769)
T KOG1650|consen 176 ELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPV 255 (769)
T ss_pred HhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCcc
Confidence 999 677899999999999999999998888887654221 1 122322222222222111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 047772 238 QNLECCLFVLFPYFSYMLAEGLG-LSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAME 316 (498)
Q Consensus 238 ~~~~~~~~l~~~~~~~~lae~~g-~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~ 316 (498)
.+.....++...+.+....+.++ .++++|+|+.|+++-|..+.. ....+.+-.....++.+++|...|+..+..
T Consensus 256 ~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g-----~~L~ekle~~~~~~llPl~~~~~G~k~di~ 330 (769)
T KOG1650|consen 256 SDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLG-----SALIEKLEDLVSGLLLPLYFAISGLKTDIS 330 (769)
T ss_pred ccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchh-----HHHHHHHHHHHHHHHHHHHHHhhccceeHH
Confidence 12345777888888888899887 788999999999998765532 233344445555688899999999987654
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCc-chhHHHHHHhhhccCCCccchhhH
Q 047772 317 KHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL-RGAMAFALALQSVHDLPEGHGQTI 395 (498)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-rG~valala~~~~~~~~~~~~~~i 395 (498)
.. ..|......+....+.+++++...+.. .|+|+++...++.... +|.+.+..-..... .+.+
T Consensus 331 ~i--~~~~~~~~~i~~~~~~K~l~t~~~sl~--------~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~------~~~~ 394 (769)
T KOG1650|consen 331 RI--NKWGALIRTILIFGAVKLLSTLGTSLY--------CKLPLRDSLALGLLMSTKGLVELIVLNTGLD------RKIL 394 (769)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCchhHHHHHHHHHHhhhHHHHHHHHHHhh------cCCc
Confidence 32 125566667777888898888877764 6899999999886655 88887765433211 1122
Q ss_pred HhhhhhhehhhHhhhhhcHHHHHHHcc
Q 047772 396 FSATTVIVVLTVLLIGGSTGTMLEALQ 422 (498)
Q Consensus 396 ~~~~~~vvl~T~~i~g~~~~~l~~~l~ 422 (498)
-..++.+.++..+++...+|++++.+.
T Consensus 395 ~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 395 SDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred ccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 222333333444444444677666654
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.11 E-value=6.4e-08 Score=98.82 Aligned_cols=250 Identities=14% Similarity=0.145 Sum_probs=154.2
Q ss_pred cccchHHhhhhhhCCCch-------hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPK-------PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~-------~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaT 168 (498)
+....+.-|..|+|++.+ ..||...+ ..-++-|+++++++- .. ++..-..+.-=-++-++|
T Consensus 68 DgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy-~~----------~n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 68 DGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIY-VA----------VNLAGGGALRGWAIPTAT 135 (423)
T ss_pred HhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHH-HH----------HhCCchhhhhhhhhhhhh
Confidence 566677788999999654 33333332 234455666654322 21 122112222222677899
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECC 243 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~ 243 (498)
|.+.++.++..+| +|.+++..+.+-+++||..++++..++. ++ +.++...........+... .+.....
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~---~i~~~~L~~a~~~~~~l~~l~~~~V~~~~ 209 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TS---ELNLEALLLALVPLALFWLLVQKRVRKWW 209 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CC---CCCHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 9999999998877 7899999999999999999999877766 22 2233322222211111111 1112233
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhcccccc-CC-----hhHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhc-
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSN-LS-----ENSQRFVSAFFHLISSLAETFV-FIYMGFDIAM- 315 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~-~~-----~~~~~~~~~~~~~l~~l~~~~~-F~~iG~~l~~- 315 (498)
..+.+.....+..+..|.++.+|.++.|+++-...+.+ .. +..++..+.+.....++.-++| |.-.|+.++.
T Consensus 210 ~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~ 289 (423)
T PRK14853 210 LLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGL 289 (423)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCc
Confidence 33334557778889999999999999999996422211 00 1123333444555568889999 9999999864
Q ss_pred cccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchh
Q 047772 316 EKHSWSHL--GFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQ 364 (498)
Q Consensus 316 ~~~~~~~~--~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 364 (498)
... .+.+ .....+.+.++++|.++++..+++.-+.+ +.+++.+|++-.
T Consensus 290 ~~~-~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~ 341 (423)
T PRK14853 290 SGL-GAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVF 341 (423)
T ss_pred hhH-HHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHH
Confidence 211 0111 25566778899999999999999876654 234455555443
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.54 E-value=1.9e-06 Score=86.49 Aligned_cols=249 Identities=14% Similarity=0.149 Sum_probs=145.9
Q ss_pred cccchHHhhhhhhCCCchhhH---hhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFF---SNFGAI---VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~---~~~~~i---~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaT 168 (498)
+....+.-|..|+|++.+-+. +++|+. ..-|+-|+++++++ | ..++..-.. ..=| ++=.+|
T Consensus 58 DgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i-----y------~~~n~~~~~-~~~GW~IP~AT 125 (373)
T TIGR00773 58 DGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI-----Y------LAFNANDPI-TREGWAIPAAT 125 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH-----H------hheecCCCc-ccCccccccHH
Confidence 566667778899999865432 232322 22334455555432 2 111111000 0011 567889
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECC 243 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~ 243 (498)
|.+-++.++.=+| +|..++..+..-++.||.-|+++-.++. ++ +.++...........+... .+..+..
T Consensus 126 DiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~---~i~~~~L~~a~~~~~~l~~~~~~~v~~~~ 199 (373)
T TIGR00773 126 DIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---TN---DLSMAALLVAAVAIAVLAVLNRCGVRRLG 199 (373)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---CC---CCCHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 9999998887554 9999999999999999999998755554 11 2233332222221111111 1222222
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhccccchh
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHL-ISSLAETFV-FIYMGFDIAMEKHSWS 321 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~-F~~iG~~l~~~~~~~~ 321 (498)
..+......++.....|.+..+|.+++|+++.+..+.. ++-.++.++..+. ..++.-++| |...|+.++....+..
T Consensus 200 ~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~ 277 (373)
T TIGR00773 200 PYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGL 277 (373)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhh
Confidence 22223333333337899999999999999998643322 1122345454444 447788999 9999999854322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchh
Q 047772 322 HLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQ 364 (498)
Q Consensus 322 ~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 364 (498)
.....+.+.+.++++|.++++..+|+.-+.+ +.+++.+|++-.
T Consensus 278 ~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~ 322 (373)
T TIGR00773 278 TSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIF 322 (373)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 1122556677889999999999999887665 234455555433
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.62 E-value=0.0027 Score=64.30 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=141.5
Q ss_pred cccchHHhhhhhhCCCchhhH---hhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFF---SNFGAI---VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~---~~~~~i---~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaT 168 (498)
+....+.-|..|+|++.+-.. ++.|+. ..-|+-|+++++++ | +.++..-. ...=| ++=.+|
T Consensus 65 DgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI-----y------~~~n~g~~-~~~~GWgIPmAT 132 (389)
T PRK09560 65 DGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI-----Y------AAFNYNNP-ETLRGWAIPAAT 132 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH-----H------heeecCCC-cccCccccccHH
Confidence 566677888999999865432 222222 22334455555432 2 11111000 00011 566789
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECC 243 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~ 243 (498)
|.+-++.++.=.| +|..++.-+..=++.||..|+++-.++. ++ +.++...........+... .+.....
T Consensus 133 DIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t~---~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 206 (389)
T PRK09560 133 DIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---TS---DLSLPALALAAIAIAVLFLLNRLGVTKLT 206 (389)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CC---CCCHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 9999999987554 9999999999999999999998755544 11 2333333322222111111 1222333
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCC-hhHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccccchh
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLS-ENSQRFVSAFFHLISSLAETFV-FIYMGFDIAMEKHSWS 321 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~-F~~iG~~l~~~~~~~~ 321 (498)
..+......++.--.-|.++-+|-++.|+++-.+.+.... +..++..+......+++..++| |.=-|+.++.......
T Consensus 207 ~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~ 286 (389)
T PRK09560 207 PYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFANAGVSLAGISLSSL 286 (389)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhc
Confidence 3334455556666667999999999999999763332211 1122333444445555656655 6556666532111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccch
Q 047772 322 HLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQ 363 (498)
Q Consensus 322 ~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~ 363 (498)
.-....-+.+.++++|.++++..+|+.-+++ +.+++.+|++-
T Consensus 287 ~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l 330 (389)
T PRK09560 287 TSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQI 330 (389)
T ss_pred cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 0123445667889999999999999887665 23445555543
No 22
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.52 E-value=0.0018 Score=65.26 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=141.8
Q ss_pred cccchHHhhhhhhCCCchhhH---hhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFF---SNFGAI---VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~---~~~~~i---~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaT 168 (498)
+....+.-|..|+|++.+-.. +++|+. ..-|+-|+++++++ | ..++.+ ....=| ++=.+|
T Consensus 62 DgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlI-----y------~~~n~~--~~~~~GW~IP~AT 128 (383)
T PRK14854 62 DGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLI-----Y------LSINHD--IKVINGWAIPSAT 128 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH-----H------HhhccC--CcccCccccccHH
Confidence 566677778899998765332 222222 22334455555432 2 111111 010111 567889
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHH-hc--c-hhhhH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVG-SI--L-QNLEC 242 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g-~~--~-~~~~~ 242 (498)
|.+-++.++.=+| +|..++..+..-++.||..|+++-.++. ++ +.++...........+. .. . +....
T Consensus 129 DIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~---~i~~~~L~~A~~~~~~l~~~nr~~~v~~~ 202 (383)
T PRK14854 129 DIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TK---SLSLLSLSLGTLFILAMIICNRIFKINRS 202 (383)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CC---CccHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 9999999887554 9999999999999999999998755544 11 23333222222111111 11 1 11222
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccccchh
Q 047772 243 CLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFV-FIYMGFDIAMEKHSWS 321 (498)
Q Consensus 243 ~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-F~~iG~~l~~~~~~~~ 321 (498)
...+......++.-..-|.+.-+|-+..|+++-.......++ .++..+.+.....++.-++| |.=-|+.+.......-
T Consensus 203 ~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~ 281 (383)
T PRK14854 203 SVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSP-ANFMEDSLHPWIIYFILPVFAFANAGISFSGISFSIL 281 (383)
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCH-HHHHHHHhhchHHHhhHHHHHhhcCCeeeccCcHHhh
Confidence 333445555666666789999999999999997643322122 12333444455566666665 6666666532111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchh
Q 047772 322 HLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQ 364 (498)
Q Consensus 322 ~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 364 (498)
.-....-+.+.++++|.++++..+++.-+.+ +.+++.+|++-.
T Consensus 282 ~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~ 326 (383)
T PRK14854 282 FEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLY 326 (383)
T ss_pred cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 0123445667789999999999999876654 234455555443
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.52 E-value=0.0054 Score=63.05 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=159.1
Q ss_pred cccchHHhhhhhhCCCchhhH---hhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFF---SNFGAI---VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~---~~~~~i---~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaT 168 (498)
+....+.-|..|+|++.+-+. +++|+. ..-|+-|+++++++ | +.++.+-. . .=| ++=.+|
T Consensus 74 DgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI-----Y------~~~n~~~~-~-~~GWgIPmAT 140 (438)
T PRK14856 74 DVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI-----Y------FFLNADTP-S-QHGFGIPMAT 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH-----H------hheecCCC-c-cCccccccHH
Confidence 566677788899998765432 222222 22334455555432 2 11111100 0 111 677889
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECC 243 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~ 243 (498)
|.+-++.++.=+| +|..++..+..=++.||.-|+++-.++. + ++.++...+.......+... .+.....
T Consensus 141 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t---~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 214 (438)
T PRK14856 141 DIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---T---TNLKFAWLLGALGVVLVLAVLNRLNVRSLI 214 (438)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C---CCCcHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999987554 8999999999999999999998765554 1 12333333332222221111 1222233
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCC----------------------hh---------------H
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLS----------------------EN---------------S 286 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~----------------------~~---------------~ 286 (498)
..+......++.-..-|.++-+|.++.|+++-.+.+.+.. ++ +
T Consensus 215 ~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (438)
T PRK14856 215 PYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQEILHSIEEKASALQS 294 (438)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchhhhhhhhhhcccccCC
Confidence 3334555566666677899999999999998643222000 00 0
Q ss_pred -HHHHHH-HHHHHHHHHHHHH-HHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCCcc
Q 047772 287 -QRFVSA-FFHLISSLAETFV-FIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARP--AHRQIPLK 361 (498)
Q Consensus 287 -~~~~~~-~~~~l~~l~~~~~-F~~iG~~l~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~--~~~~~~~~ 361 (498)
-++.++ ......++.-++| |.=-|+.++...... .-.....+++.++++|.++++..+++.-+++. .+++++|+
T Consensus 295 pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~ 373 (438)
T PRK14856 295 PLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE-VDKVLLGVILGLCLGKPLGIFLITFISEKLKITARPKGISWW 373 (438)
T ss_pred HHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 012222 2333444555554 555666654221111 01234556678899999999999999877652 34455555
Q ss_pred chhheeccCcchhHHHHHHhhhc-cCCCccchhhHHhhhhhhehhhHhhhhhcHHHHHHHc
Q 047772 362 HQQALWYSGLRGAMAFALALQSV-HDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEAL 421 (498)
Q Consensus 362 ~~~~~~~~G~rG~valala~~~~-~~~~~~~~~~i~~~~~~vvl~T~~i~g~~~~~l~~~l 421 (498)
+-.-.+ .-+.+.+-+++-.. ..+++.+.+ .....=.-|++..++.+...-.++|+.
T Consensus 374 ~l~gv~---~LaGIGFTmSLFIa~LAF~~~~~~-~~~~aKigIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 374 HILGAG---LLAGIGFTMSMFISNLAFTSEHKD-AMEVAKIAILLGSLISGIIGALYLFAL 430 (438)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 433322 23444444443221 123220011 222222334445555555444555544
No 24
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.012 Score=57.57 Aligned_cols=263 Identities=15% Similarity=0.130 Sum_probs=143.8
Q ss_pred HHhhhhhhCCCchhhH---hhHHHHH---HHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHH
Q 047772 101 FRHTQSGFSLSPKPFF---SNFGAIV---TFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVL 174 (498)
Q Consensus 101 ~ilF~~G~~l~~~~l~---~~~~~i~---~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~ 174 (498)
+.-+..|+|++++-+. +++++.. .-|.-|+++++.+ | ..++.+-....===++=++||.+-++
T Consensus 73 vFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y------~~~n~~~p~~~~GWaIP~ATDiAFAl 141 (390)
T COG3004 73 VFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----Y------LALNAGDPATLEGWAIPMATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----h------heeecCChhhhcCcCcccHHHHHHHH
Confidence 4456679999876654 3444432 2233344444332 2 22222222222222778899999999
Q ss_pred HHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHHHHHHHH
Q 047772 175 SIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECCLFVLFP 249 (498)
Q Consensus 175 ~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~~~l~~~ 249 (498)
.++.-+| +|..++.-+..-+++||.-++++-.++.. + ..++.......+...+-.. .+.......+.+.
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~---~Ls~~al~~a~~~i~vL~~lN~~~v~~l~~Y~~~g 215 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---T---DLSMAALGIAALAIAVLAVLNRLGVRRLSPYLLVG 215 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---C---CccHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence 9997555 89999999999999999999887665542 1 2222222222222111111 1112222233333
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccccchhHHHHHHH
Q 047772 250 YFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFV-FIYMGFDIAMEKHSWSHLGFIFF 328 (498)
Q Consensus 250 ~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-F~~iG~~l~~~~~~~~~~~~~~~ 328 (498)
...+..-..-|...-+|-++.|+++--.++...++- ++..+.......|...++| |.=-|+.+.-.+.+-..-...+-
T Consensus 216 viLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl-~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~l~lg 294 (390)
T COG3004 216 VILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPL-ERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSPLTLG 294 (390)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcH-HHHHHHhhhhHHHHHHHHHHHccCCcccccccccccccchHHH
Confidence 333333334566666777777776653333222222 2333444555677777766 77777776422111111233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchhhee-ccCcchhHHHHHHh
Q 047772 329 SILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQALW-YSGLRGAMAFALAL 381 (498)
Q Consensus 329 ~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~G~rG~valala~ 381 (498)
+++.++++|.++++..+|+.-+.+ +.+.+.+|++-.-.+ .+|.-=.+++-++.
T Consensus 295 I~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~ 350 (390)
T COG3004 295 IILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIAS 350 (390)
T ss_pred HHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 667789999999999999876554 345666776544332 44553345555443
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.43 E-value=0.0074 Score=61.05 Aligned_cols=250 Identities=14% Similarity=0.145 Sum_probs=142.5
Q ss_pred cccchHHhhhhhhCCCchhhH---hhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFF---SNFGAI---VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~---~~~~~i---~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaT 168 (498)
+....+.-|..|+|++.+-.. +++|+. ..-|+-|+++++++ | +.++.+-. ...=| ++=.+|
T Consensus 65 DgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli-----y------~~~n~~~~-~~~~GWaIP~AT 132 (388)
T PRK09561 65 DGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI-----Y------LLFNYADP-VTREGWAIPAAT 132 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH-----H------hheecCCC-cccCccccccHH
Confidence 566677888999999865432 222222 22334455555432 2 11111100 00011 567889
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECC 243 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~ 243 (498)
|.+-++.++.=.| +|..++..+..-++.||..|+++-.++.. ++.++...........+... .+.....
T Consensus 133 DIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt------~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 206 (388)
T PRK09561 133 DIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT------SDLSMVSLGVAAVAIAVLAVLNLCGVRRTS 206 (388)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC------CCccHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 9999999886544 89999999999999999999987655541 12333333222221111111 1222233
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccccchhH
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFV-FIYMGFDIAMEKHSWSH 322 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-F~~iG~~l~~~~~~~~~ 322 (498)
..+......++.-..-|.++-+|-+..|+.+-.+.++..++ .++..+......+++..++| |.=-|+.+.........
T Consensus 207 ~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~p-l~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~ 285 (388)
T PRK09561 207 VYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSP-AERLEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLT 285 (388)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCH-HHHHHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhc
Confidence 33344555566666789999999999999997643322121 23333444555566566655 66566665321111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchh
Q 047772 323 LGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQ 364 (498)
Q Consensus 323 ~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 364 (498)
-.....+.+.++++|.++++..+++.-+++ +.+++.+|++-.
T Consensus 286 ~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~ 329 (388)
T PRK09561 286 SPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIY 329 (388)
T ss_pred CcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 123445667789999999999999887665 234455555443
No 26
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.39 E-value=0.00073 Score=68.11 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=128.4
Q ss_pred cccchHHhhhhhhCCCchhh----HhhHHH--HHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcc
Q 047772 96 SFLDSFRHTQSGFSLSPKPF----FSNFGA--IVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATD 169 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l----~~~~~~--i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTd 169 (498)
+....+.-|..|+|++.+-. ++.++. ...-++-|++++++ +| ..++..-.+..-==++=++||
T Consensus 61 DgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iy------l~~n~~~~~~~~GW~IP~ATD 129 (378)
T PF06965_consen 61 DGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IY------LAFNAGGPEAAHGWAIPMATD 129 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HH------GGG--SSTTHHHHTSSSS---
T ss_pred HhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HH------heeecCCCCcCceEEeccccc
Confidence 56777788899999976533 222222 12223345555432 33 222222111111117788999
Q ss_pred hHHHHHHHHhh--CCChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH-Hhc--chhhhHHH
Q 047772 170 PVTVLSIFQEL--GTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFV-GSI--LQNLECCL 244 (498)
Q Consensus 170 pv~v~~il~~~--~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-g~~--~~~~~~~~ 244 (498)
.+-++.++.=. ++|..++..+..=+++||..++++-.++.. + +.++...........+ ..+ .+......
T Consensus 130 IAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~---~i~~~~L~~a~~~~~~l~~l~r~~v~~~~~ 203 (378)
T PF06965_consen 130 IAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D---GISLLWLLLAAAALLLLFVLNRLGVRSLWP 203 (378)
T ss_dssp HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHHHHHHHHHHHTT---THH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C---CCCHHHHHHHHHHHHHHHHHHHCCCceehH
Confidence 99999999744 489999999999999999999988666542 1 2233332222211111 111 12222233
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccC---ChhHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccccch
Q 047772 245 FVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNL---SENSQRFVSAFFHLISSLAETFV-FIYMGFDIAMEKHSW 320 (498)
Q Consensus 245 ~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~-F~~iG~~l~~~~~~~ 320 (498)
.+......++.-..-|.++-+|-++.|+.+-.+.+.+. .+..++..+......+++..++| |.=-|+.++......
T Consensus 204 Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~ 283 (378)
T PF06965_consen 204 YLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGD 283 (378)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---T
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHh
Confidence 33444555666666788899999999999976655431 11222323334444455666655 666677665432211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchh
Q 047772 321 SHLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQ 364 (498)
Q Consensus 321 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~ 364 (498)
..-....-+.+.++++|.++++..+++..+.+ +.+++.+|++-.
T Consensus 284 ~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~ 329 (378)
T PF06965_consen 284 LTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLY 329 (378)
T ss_dssp HHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGT
T ss_pred hhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHH
Confidence 11123344567788999999999988765544 234555565443
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.33 E-value=0.013 Score=60.05 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=138.3
Q ss_pred cccchHHhhhhhhCCCchhhH---hhHHHH---HHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFF---SNFGAI---VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISAT 168 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~---~~~~~i---~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaT 168 (498)
+....+.-|..|+|++.+-+. +++|+. ..-|+-|+++++++ | +.++.+-.. .=| ++=.+|
T Consensus 69 DgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI-----y------~~~n~~~~~--~~GWgIPmAT 135 (423)
T PRK14855 69 DGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL-----Y------TALNAGGPG--ASGWGVPMAT 135 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH-----H------heeecCCCc--cCccccccHH
Confidence 566677788899999865432 222222 22334455555432 2 112111110 111 677899
Q ss_pred chHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc---chhhhHH
Q 047772 169 DPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI---LQNLECC 243 (498)
Q Consensus 169 dpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~---~~~~~~~ 243 (498)
|.+-++.++.=+| +|..++..+..-++.||..|+++-.++. ++ +.++...........+... .+.....
T Consensus 136 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~---~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 209 (423)
T PRK14855 136 DIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TS---GLNLLALLLAALTWALALLAGRLGVTSLK 209 (423)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CC---CCCHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999997554 8999999999999999999998755544 11 2233333222221111111 1222333
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCC------------------------h--------hHHHHHH
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLS------------------------E--------NSQRFVS 291 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~------------------------~--------~~~~~~~ 291 (498)
..+......++.-..-|.++-+|-++.|+++-.+.+++.. + ..++..+
T Consensus 210 ~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh 289 (423)
T PRK14855 210 IYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEH 289 (423)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhhhccccCCHHHHHHH
Confidence 3334555566666677999999999999999653111100 0 0111222
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccch
Q 047772 292 AFFHLISSLAETFV-FIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQ 363 (498)
Q Consensus 292 ~~~~~l~~l~~~~~-F~~iG~~l~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~ 363 (498)
......+++.-++| |.=-|+.+.... .. .....+.+.++++|.++++..+|+.-+++ +.+++++|++-
T Consensus 290 ~L~p~vaf~IlPlFAfaNAGV~l~~~~--~~--pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l 360 (423)
T PRK14855 290 ALHPWSTFLILPVFALFNAGVSVSGGG--LG--TVSLGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLHM 360 (423)
T ss_pred HhhhhHHHhhHHHHHhhcCCeeecCCC--CC--cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 23333444455544 555566653221 22 23455667889999999999999877664 23445555543
No 28
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=96.26 E-value=0.24 Score=48.72 Aligned_cols=206 Identities=11% Similarity=0.089 Sum_probs=116.6
Q ss_pred CcCChHHHHHHHHHHHHHhhhccCccccccc-ccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHH
Q 047772 52 YYLPEASASLLIGLIVGALANISNTETNISA-YLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGT 130 (498)
Q Consensus 52 ~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~ 130 (498)
+|+|. +.+++=+++|.+.+...++. .+ .-.++..++ ....-.+...+|..|-++|.|+..+..++-..+.+.=+
T Consensus 8 ~kiPG--G~mvVPLllgalinTf~P~~--l~~iG~fT~al~-~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~ 82 (314)
T PF03812_consen 8 EKIPG--GMMVVPLLLGALINTFFPNA--LEIIGGFTTALF-TGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKF 82 (314)
T ss_pred ccCCC--ceeHHHHHHHHHHHhcCCCh--hhccCcHHHHHH-cchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHH
Confidence 36884 66666666666554332211 11 012333233 23346778899999999999999988888777776665
Q ss_pred HHHHHHHHHHHHHhhHhhh----cccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHH
Q 047772 131 FLASMVTGILVYLGGVMFL----MYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYR 206 (498)
Q Consensus 131 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~ 206 (498)
.+.+++.-.+.++.|.... ++| ..++.+=+.++.+.+....++.+|+|-+++.... +-.-+||+=.+.+.
T Consensus 83 ~~~~~lgl~~~~~fg~~Gi~~g~f~G---lS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~--~i~sl~~GPf~tMl- 156 (314)
T PF03812_consen 83 IIGALLGLLVGKFFGPEGIQSGFFLG---LSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAF--SILSLNDGPFFTML- 156 (314)
T ss_pred HHHHHHHHHHHHHcCccccccccccc---hHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHH--HHHHhhhhHHHHHH-
Confidence 5554433333332221111 122 3456666888999999999999999866554332 22234554322221
Q ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhH
Q 047772 207 TMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENS 286 (498)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~~~~~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~ 286 (498)
..+.... ....+.. ++...+ =++.|++++|..+
T Consensus 157 -~LG~sG~--a~ip~~~-------------------lv~~ll------------------P~iiG~iLGNLD~------- 189 (314)
T PF03812_consen 157 -ALGASGL--ANIPWMS-------------------LVAALL------------------PIIIGMILGNLDP------- 189 (314)
T ss_pred -HHhhccc--cCCCHHH-------------------HHHHHH------------------HHHHHHHHhcCCH-------
Confidence 1111110 1111111 111111 2456888887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047772 287 QRFVSAFFHLISSLAETFVFIYMGFDIAMEK 317 (498)
Q Consensus 287 ~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~ 317 (498)
..+.+...-..+.-+++-+-+|..++..+
T Consensus 190 --~~r~fl~~~~~~lIPF~~f~lGa~inl~~ 218 (314)
T PF03812_consen 190 --DFRKFLAPGVPILIPFFGFALGAGINLSN 218 (314)
T ss_pred --HHHHHHhcCCCeeeehhhhhhcCCCCHHH
Confidence 25667777777888888888998877654
No 29
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.69 E-value=0.14 Score=56.12 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=51.2
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v 173 (498)
.+++|+.-...|+++|.+.+..++..++.+.+..++.-.+.+.... ...++++.+++.+|..+++....+.
T Consensus 268 ~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~-------~~~g~~~~~al~~g~~L~~~Gef~~ 338 (601)
T PRK03659 268 GLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLA-------RLYGLRSSERMQFAGVLSQGGEFAF 338 (601)
T ss_pred HHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCCHHHHHHHHHHHhccccHHH
Confidence 6788888888899999999998887665554444333333333222 3578999999999999888776554
No 30
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.63 E-value=0.16 Score=55.89 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=49.4
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVT 172 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~ 172 (498)
.+++|+.-...|+++|++.+.+++..++.+.+..++.-.+.+.... ...++++.+++.+|..+++-....
T Consensus 271 ~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~-------~~~g~~~~~a~~~gl~L~~~Gef~ 340 (621)
T PRK03562 271 GLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLA-------RPLGVPRKQRRWFAVLLGQGGEFA 340 (621)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCCHhHHHHHHHHHhccccHH
Confidence 5777888888899999999988877765554433333333333322 357899999999999998765543
No 31
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=95.25 E-value=4.3 Score=41.84 Aligned_cols=286 Identities=13% Similarity=0.145 Sum_probs=133.6
Q ss_pred CcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHH
Q 047772 52 YYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTF 131 (498)
Q Consensus 52 ~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~ 131 (498)
+++|.++..++.|+++.....+.++.. .--.+... .+.+|.-++.-=++.|+|+++|..++.+..=+.+ .
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli~~p~~------s~~y~~v~---~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~ 92 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLIDSPAS------SPVYDFVW---TYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-A 92 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCcCCCCc------chHHHHHH---HHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-H
Confidence 379999999999999987654411110 01123445 6778888888888889999998887755433333 2
Q ss_pred HHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHH
Q 047772 132 LASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLV 211 (498)
Q Consensus 132 i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~ 211 (498)
+++++.+.+.++.-...+..+..-..+.+.|+=+.-+-= -.++-+.+++++. ..-..-..|..++-+-+.++..+
T Consensus 93 ~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N--~~Av~~al~~~~~---~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 93 VGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVN--FVAVAEALGVSDS---LFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhH--HHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333331100001111112234444444444322 2233355677653 22222333444443333333333
Q ss_pred Hcc--------CCcchHHHHHHHHHHHHHHHhcchh---hhHH----HHHHHHHHHHHHHHhh-----ccc----hhHHH
Q 047772 212 RSH--------ASSGQNFFMVIVRFLETFVGSILQN---LECC----LFVLFPYFSYMLAEGL-----GLS----GIVSI 267 (498)
Q Consensus 212 ~~~--------~~~~~~~~~~i~~~l~~~~g~~~~~---~~~~----~~l~~~~~~~~lae~~-----g~S----gilav 267 (498)
... ..+... .+....=...--..-.++ .... +.+.++..+..+++.+ +.+ -++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~ 246 (378)
T PF05684_consen 168 PPFARKFDRWTKADTSS-IEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTV 246 (378)
T ss_pred hhhhHHhhhccCCCccc-cchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 220 000000 000000000000000000 1112 2233344455555554 222 34455
Q ss_pred HHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047772 268 LFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYL 347 (498)
Q Consensus 268 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~ 347 (498)
...|+..+..+..+ .. .--+.+...+--+||..+|...+.....- . +..++..+..+..-.+..+...++
T Consensus 247 tt~~l~~~~~~~~~-------~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-a-p~~~l~~~i~l~iH~~l~l~~~kl 316 (378)
T PF05684_consen 247 TTLGLATSFPPFRK-------LL-RGASELGTFLLYLFFAVIGASADISELLD-A-PSLFLFGFIILAIHLLLMLILGKL 316 (378)
T ss_pred HHHHHHHhccchhh-------cC-CchHHHHHHHHHHHHHHHccccCHHHHHH-h-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677665433321 11 33456667777889999999877654321 1 122222233344444555555554
Q ss_pred HHhhcccCCCCCccchhheeccCc
Q 047772 348 VNLARPAHRQIPLKHQQALWYSGL 371 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~G~ 371 (498)
.|+++.+-.+-+.+..
T Consensus 317 --------~k~~l~~~~vAS~AnI 332 (378)
T PF05684_consen 317 --------FKIDLFELLVASNANI 332 (378)
T ss_pred --------HCCCHHHHHHHhhccc
Confidence 3667777777665555
No 32
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.00 E-value=3.1 Score=41.50 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=69.9
Q ss_pred CCcCChHHHHHHHHHHHHH-hhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHH
Q 047772 51 FYYLPEASASLLIGLIVGA-LANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFG 129 (498)
Q Consensus 51 ~~~iP~~~~~ll~GiilG~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g 129 (498)
.+.++.....+++|++++. ..+.++. ...-.++..+ ..|..=+-.-|.+++..++.+.....+...+..
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~---~~~Gi~~~~k-------~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~ 92 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPAR---FKPGIKFSSK-------KLLRLGIVLLGFRLSFSDILALGWKGLLIIIIV 92 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHH---HHhHHHHHHH-------HHHHHHHHHHCccccHHHHHHhCccHHHHHHHH
Confidence 3458999999999999996 4443221 1111223332 444445555699999999999999877777666
Q ss_pred HHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhcc---ccCCcchHHHHHHHH
Q 047772 130 TFLASMVTGILVYLGGVMFLMYRLPFVECLMFGA---LISATDPVTVLSIFQ 178 (498)
Q Consensus 130 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~ga---ilsaTdpv~v~~il~ 178 (498)
+..+.....++.. -.++++...+.++|+ ++.++.-+++.+++|
T Consensus 93 v~~~~~~~~~lg~------r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~ 138 (305)
T PF03601_consen 93 VILTFLLTYWLGR------RLFGLDRKLAILIAAGTSICGASAIAATAPVIK 138 (305)
T ss_pred HHHHHHHHHHHHH------HHhCCCHHHHHHHHhhcccchHHHHHHHccccc
Confidence 6555544433331 367889888888884 444444444444443
No 33
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.37 E-value=0.84 Score=49.71 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=46.1
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v 173 (498)
.+++|+.-...|+++|.+.+.+++..++.+.+...+.-.+.+.... ...+.++.+++..|..+++......
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~-------~~~g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLV-------RLFGHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCChhhHHHHHHHHhcccchHH
Confidence 5678888888899999999988765444332222222222222111 3568999999999999987655443
No 34
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.28 E-value=6.8 Score=39.60 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHH
Q 047772 54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLA 133 (498)
Q Consensus 54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~ 133 (498)
++..+..++.|+++|..... ........-.++..+.+. .++ +-.-|.+++++++.+...+.+......+..+
T Consensus 31 l~~~~~AillG~~l~n~~~~-~~~~~~~~Gi~f~~k~lL---r~g----IVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~ 102 (335)
T TIGR00698 31 LSALFLAILLGMVAGNTIYP-QRDEEKKRGVLFAKPFLL---RIG----ITLYGFRLTFPYIADVGPNEIVADTLILTST 102 (335)
T ss_pred CcHHHHHHHHHHHHhccccc-cchhhccchHHHHHHHHH---HHH----HHHHCccccHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888999988863311 111111111222333333 333 4445899999999999988777665554444
Q ss_pred HHHHHHHHHHhhHhhhcccCcHHHHHHhc---cccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHH
Q 047772 134 SMVTGILVYLGGVMFLMYRLPFVECLMFG---ALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSL 210 (498)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~all~g---ailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~ 210 (498)
.....++.. -.++++...++++| +++.++.-+++.+++| .+++-.....+--.+=+.+++.+|=.+..
T Consensus 103 ~~~~~~~g~------k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~---A~~~~~a~ava~V~lfgt~am~l~P~l~~ 173 (335)
T TIGR00698 103 FFLTVFLGS------SRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK---AEKEKVSVAIAIVVIFGTTGIFLYPSIYH 173 (335)
T ss_pred HHHHHHHHH------HHhCCChhHHHHHHcchhHHHHHHHHHhccccC---CCccceeeeehHHHHHHHHHHHHHHHHHH
Confidence 333322221 24688888888887 4555555555555554 23332222222222233455555544444
Q ss_pred HH
Q 047772 211 VR 212 (498)
Q Consensus 211 ~~ 212 (498)
+.
T Consensus 174 ~l 175 (335)
T TIGR00698 174 YA 175 (335)
T ss_pred HH
Confidence 43
No 35
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.19 E-value=4.7 Score=40.01 Aligned_cols=128 Identities=14% Similarity=0.029 Sum_probs=71.1
Q ss_pred CcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHH
Q 047772 52 YYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTF 131 (498)
Q Consensus 52 ~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~ 131 (498)
+|+|. +++++=+++|.+.+..-++ ..+.-.+...+|-+...-.+...+|..|-++|.|.-.+..++-..+...=+.
T Consensus 8 ~kiPg--g~m~vPl~lga~inTf~P~--~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~ 83 (312)
T PRK12460 8 KKIPG--GMMVVPLLIGALINTFFPQ--ALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLG 83 (312)
T ss_pred ccCCC--ceeHHHHHHHHHHHhccCc--chhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHH
Confidence 35884 5555555555443322211 1112244444443222346778899999999999987777776655544444
Q ss_pred HHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhH
Q 047772 132 LASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLY 187 (498)
Q Consensus 132 i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~ 187 (498)
+.+++.-.+.++.|. -++-=...+.+=+.++.|......++..|+|-+++..
T Consensus 84 ~~~~~g~~~~~~~g~----~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~g 135 (312)
T PRK12460 84 VAIVIGLLVGKFFGA----EGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVG 135 (312)
T ss_pred HHHHHHHHHHHHcCc----ccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhh
Confidence 443332222232111 1121233455557778888888888988888655543
No 36
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.77 E-value=0.43 Score=54.40 Aligned_cols=92 Identities=18% Similarity=0.317 Sum_probs=52.3
Q ss_pred cccchHHhhhhhhCCCchhhHhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNF--GAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~--~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v 173 (498)
.+++|+.....|+++|.+.+.... ..+..+.+..+ +.=++.+.+. ....++|+.+++.+|.++++---+..
T Consensus 325 ~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~-~gK~~g~~l~------a~~~g~~~~eal~lG~lm~~kG~~~L 397 (832)
T PLN03159 325 GLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMAS-AGKIMGTIII------AFFYTMPFREGITLGFLMNTKGLVEM 397 (832)
T ss_pred HHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHH-HHHHHHHHHH------HHHhCCCHHHHHHHHHHHhcccHHHH
Confidence 578888888999999998875422 11111111111 1111222211 14678999999999999999765442
Q ss_pred --HHHHHhhC-CChhhHHHHhhhc
Q 047772 174 --LSIFQELG-TDMNLYALVFGES 194 (498)
Q Consensus 174 --~~il~~~~-~~~~l~~ll~gEs 194 (498)
..+-.+.| ++++.+..+..-+
T Consensus 398 ii~~ig~~~gvi~~~~f~~lVl~a 421 (832)
T PLN03159 398 IVLNVGRDQEVLDDESFAVMVLVA 421 (832)
T ss_pred HHHHHHHhcCccCchhhhHHHHHH
Confidence 23334444 4444444443333
No 37
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=93.73 E-value=8.2 Score=38.54 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=42.9
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLS 175 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~ 175 (498)
..++..|+|.-|+.++.+++++..+.-.... .+...+..+.-.+.+..+ .. ++...-+..|-++..+-|..+.+
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vl-igl~~qfvlmPlla~~~~---~~--~~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVL-IGLAAQFVLMPLLALLLA---KL--FPLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHHHH---HH--cCCCHHHHHhHHheeeCCCchhH
Confidence 5788999999999999999985554433222 233444433333333211 12 22444556666665555555554
Q ss_pred H
Q 047772 176 I 176 (498)
Q Consensus 176 i 176 (498)
.
T Consensus 115 ~ 115 (319)
T COG0385 115 N 115 (319)
T ss_pred H
Confidence 3
No 38
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=93.45 E-value=1.5 Score=40.28 Aligned_cols=133 Identities=15% Similarity=0.246 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcc-cccccccccChhhhhhcc----cccchHHhh
Q 047772 30 LLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTE-TNISAYLLLDFEFYLQHF----SFLDSFRHT 104 (498)
Q Consensus 30 l~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~-~~i~~~~~~~~~~~~~~~----~~~L~~ilF 104 (498)
....++..++.+++..+-|-| +|.+...++.|+++....+..... +.+. |-.+|.... .+.==+-+-
T Consensus 19 a~vG~~m~~s~~lS~~lT~Gr---~hgSAIAI~lGL~lAy~gG~~TgG~kGla-----Di~lfsGiglmGGaMlRDfAIv 90 (254)
T TIGR00808 19 AVVGLMMYVSHLLSKYLTKGK---LHGSAIAITMGLVLAYVGGVYTGGEKGLA-----DIAIFGGFGLMGGAMLRDLAIV 90 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---cchhHHHHHHHHHHHHHcccccCCccccc-----hhhhhcchhhhhhHHHHHHHHH
Confidence 344444455555555444445 999999999999999876543221 1111 111333100 112234466
Q ss_pred hhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcH--------------HHHHHhccccCCcch
Q 047772 105 QSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPF--------------VECLMFGALISATDP 170 (498)
Q Consensus 105 ~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~all~gailsaTdp 170 (498)
..+++.|.++.||....-..--++|+++++++.....+. +++.= ...=.-|+.+.+++.
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a-------fGY~DavS~tTIGAGAvTyIVGPVTGaAiGAsS~ 163 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWA-------FGYRDAVSMTTIGAGAVTYIVGPVTGAAVGASSE 163 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCchhheeeccceEEEEecCccchhccCCcc
Confidence 789999999999999988888888999988777766663 33321 112234566666666
Q ss_pred HHHHHHH
Q 047772 171 VTVLSIF 177 (498)
Q Consensus 171 v~v~~il 177 (498)
+..+++-
T Consensus 164 ViALSIA 170 (254)
T TIGR00808 164 VIALSIA 170 (254)
T ss_pred hHHHHHH
Confidence 6666654
No 39
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.26 E-value=0.22 Score=46.10 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCc-----hhhHhhHHHHHHHHHHHHHH
Q 047772 58 SASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSP-----KPFFSNFGAIVTFAIFGTFL 132 (498)
Q Consensus 58 ~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~-----~~l~~~~~~i~~la~~g~~i 132 (498)
+..+++|+++|....... +.. +... +..|..++|..|.++-. |++++..++.+.+.+ .+++
T Consensus 2 l~~li~Gi~lG~~~~~~~---------~~~-~~~~---~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl-~tIl 67 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPF---------SLI-DKIS---TYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPL-ATIL 67 (191)
T ss_pred eeeHHHHHHHHHHhcccc---------ccc-ccHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHH-HHHH
Confidence 346788999996554320 111 2344 68899999999999854 355666678777775 5556
Q ss_pred HHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHH
Q 047772 133 ASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSL 210 (498)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~ 210 (498)
.+++.+.+.. ...++|+.+++.+|+=..==+-..+ .+.++ ..+.++++-+-.-++=+.+++++.=.+..
T Consensus 68 GSllgg~l~~------~ll~~~~~~~lav~sG~GwYSlsg~--~i~~~-~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 68 GSLLGGLLAS------LLLGLSLKESLAVASGFGWYSLSGV--LITQL-YGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHHHH------HHhcCCHHHHHHHHccCcHHHhHHH--HHHhh-hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665 4559999999999876654333222 23333 23455665555555555666655444443
No 40
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=93.00 E-value=3.2 Score=42.62 Aligned_cols=115 Identities=12% Similarity=0.175 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChh---hhhhcccccchHHhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFE---FYLQHFSFLDSFRHTQ 105 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~L~~ilF~ 105 (498)
+.++.+.+.++..+...+++.. ..+|.-+..++.|+++..+....... ..|.+ .+. .+.|-+.+..
T Consensus 223 l~~i~i~~~~G~~i~~~l~~~~-~~lP~f~~ami~g~ivrn~~~~~~~~-------~id~~~i~~I~---~~sL~~fl~~ 291 (368)
T PF03616_consen 223 LALILIAIGLGYIISALLKKIG-LTLPLFVGAMIVGIIVRNILDKTGKY-------KIDRKTIDRIS---GISLDLFLAM 291 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-cCCchHHHHHHHHHHHHHHHHHhCcc-------cCCHHHHHHHH---HHHHHHHHHH
Confidence 4444555556666666776643 34899999999999998766432211 13332 344 7888888899
Q ss_pred hhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHH
Q 047772 106 SGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLM 160 (498)
Q Consensus 106 ~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all 160 (498)
+=.+++...+.++..+.+.+-+.+++++.+..-++.+ ...+-++..+.+
T Consensus 292 almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~f------r~~gkdydaavm 340 (368)
T PF03616_consen 292 ALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTF------RVMGKDYDAAVM 340 (368)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhCCChhHHHH
Confidence 9999999999999999998877888776655444333 345666655544
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=92.86 E-value=1.4 Score=45.79 Aligned_cols=122 Identities=13% Similarity=0.106 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhccc-ccchHHhhhhhhCC
Q 047772 32 QIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFS-FLDSFRHTQSGFSL 110 (498)
Q Consensus 32 ~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~L~~ilF~~G~~l 110 (498)
+...+.+....+++.+..+ ++.+.+..++|+++.-..... +..+-+-+-+- + +++|+.-...|.++
T Consensus 224 ~~~~l~i~l~~a~l~e~~g---ls~ilGAFlaGl~ls~~~~~~-------~~l~~~i~~~~---~~~fiplFFi~vG~~~ 290 (397)
T COG0475 224 ILFVLLLVLGAAYLAELLG---LSMILGAFLAGLLLSESEYRK-------HELEEKIEPFG---DGLFIPLFFISVGMSL 290 (397)
T ss_pred HHHHHHHHHHHHHHHHHhC---hhHHHHHHHHHHHhcccccch-------HHHHHHHHhHH---hHHHHHHHHHHhhHHc
Confidence 3344444556666777777 778888888888876221110 01111222344 6 88999999999999
Q ss_pred CchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHH
Q 047772 111 SPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 111 ~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v 173 (498)
|.+.+.+++..+..+....+..-........ ...+++...++..|..+.+.-..+.
T Consensus 291 dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~-------~~~g~~~~~~~~~g~~~~~~ge~~~ 346 (397)
T COG0475 291 DLGVLLENLLLILLLVALAILGKILGAYLAA-------RLLGFSKRLALGIGLLLRQGGEFAF 346 (397)
T ss_pred CHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCcHHHHHHHHhhhhhhhHHHH
Confidence 9999999999855555444433333333332 3566888888888888777555444
No 42
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.80 E-value=12 Score=37.80 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=40.2
Q ss_pred ccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHH
Q 047772 97 FLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSI 176 (498)
Q Consensus 97 ~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~i 176 (498)
+++.+++|..|.+++.++++|..++--... .+.+.+.++.=.+.|..+. ..++.+. .+..|-++.+.-|-.+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~-~~~~~qfvi~Plla~~l~~--l~~~~~p--~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLI-LSLFINWIIGPFLMFLLAW--LFLRDLF--EYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHH--HHcCCCH--HHHHHHHHHHhcchHHHHH
Confidence 455679999999999999986655533322 2444444443333332221 2223332 3555555555445444443
Q ss_pred H
Q 047772 177 F 177 (498)
Q Consensus 177 l 177 (498)
.
T Consensus 122 v 122 (328)
T TIGR00832 122 V 122 (328)
T ss_pred H
Confidence 3
No 43
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.61 E-value=0.93 Score=49.31 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCC--cCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCch--
Q 047772 38 LSFVLGHVLRRHKFY--YLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPK-- 113 (498)
Q Consensus 38 ~~~~~~~l~~~~~~~--~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~-- 113 (498)
+...+++.+-|.|+. .+-.+.+.+++|+++|.+.. .+++ .+- ++++...+|..|++.-..
T Consensus 17 l~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~------------~i~~-~v~---~~gl~lFvy~vG~~~Gp~Ff 80 (562)
T TIGR03802 17 LSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI------------QIDP-GVK---AVFFALFIFAIGYEVGPQFF 80 (562)
T ss_pred HHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC------------CCCh-HHH---HHHHHHHHHHhhhccCHHHH
Confidence 334444444444432 35557889999999994311 2233 344 689999999999998854
Q ss_pred -hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCc--HHHHHHhccccCCcchHHHHHHHHhhCCChh
Q 047772 114 -PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLP--FVECLMFGALISATDPVTVLSIFQELGTDMN 185 (498)
Q Consensus 114 -~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~--~~~all~gailsaTdpv~v~~il~~~~~~~~ 185 (498)
.+||...+...+++..++...+++ +.+. ..++++ ....++-||.-+...-.++...+++.+.++.
T Consensus 81 ~~l~~~g~~~~~~a~~~~~~~~~~~-~~~~------~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~~~ 148 (562)
T TIGR03802 81 ASLKKDGLREIILALVFAVSGLITV-YALA------KIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLSPE 148 (562)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH-HHHH------HHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCCcc
Confidence 445555556666655544443333 3222 245554 5556666666555454555555566665544
No 44
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.54 E-value=1.6 Score=43.55 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
+....++...+..++...-..+.. +|.....++.|+++|........ ...-.++.... .|.+=+-.-|+
T Consensus 13 l~l~~~ia~~a~~l~~~~~~~~~~-l~al~lAIllGi~l~~l~~~~~~---~~~GI~fs~k~-------LLr~gIvLlG~ 81 (334)
T COG2855 13 LLLSALIAGLAMLLGAFFFSIHLG-LSALTLAILLGILLGILPQIPAQ---TSAGITFSSKK-------LLRLGIVLLGF 81 (334)
T ss_pred HHHHHHHHHHHHHHhchHHhhhcC-chHHHHHHHHHHHHhccccchhh---hccchhhhHHH-------HHHHHHHHHcc
Confidence 445555556666666655444433 78999999999999954433211 11123444434 44444455689
Q ss_pred CCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhcc---ccCCcchHHHHHHHHhhCCChh
Q 047772 109 SLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGA---LISATDPVTVLSIFQELGTDMN 185 (498)
Q Consensus 109 ~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~ga---ilsaTdpv~v~~il~~~~~~~~ 185 (498)
++++.++.+...+.+..... ++.++++.++.. | -.+++|+..+++.|+ |+.+..-+++.++.+. -+++
T Consensus 82 ~ltl~~i~~~G~~~v~~~~~-~l~~t~~~~~~l---g---~~lgld~~~a~Lia~GssICGasAiaA~~pvika--~~~e 152 (334)
T COG2855 82 RLTLSDIADVGGSGVLIIAI-TLSSTFLFAYFL---G---KLLGLDKKLALLIAAGSSICGASAIAATAPVIKA--EEEE 152 (334)
T ss_pred eeeHHHHHHcCccHHHHHHH-HHHHHHHHHHHH---H---HHhCCCHHHHHHHHccchhhHHHHHHHhCCcCCC--Cccc
Confidence 99999999888886666543 333344443322 2 368999999999984 4455555555555541 2334
Q ss_pred hHHHHhhhcccchhhHHHHHHHHHHHH
Q 047772 186 LYALVFGESVLNDAMAISLYRTMSLVR 212 (498)
Q Consensus 186 l~~ll~gEs~lnD~~aivl~~~~~~~~ 212 (498)
...-+....+++- +++.+|-.+..+.
T Consensus 153 va~aIa~V~lfgt-ia~llyP~l~~~l 178 (334)
T COG2855 153 VAVAIAVVVLFGT-LAMLLYPLLYPLL 178 (334)
T ss_pred cceehhhHHHHHH-HHHHHHHHHHHHh
Confidence 4444444444444 4444444444443
No 45
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.53 E-value=14 Score=37.94 Aligned_cols=137 Identities=20% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhh
Q 047772 28 GILLQIMMLVLSFVLGH---VLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHT 104 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~---l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF 104 (498)
.+.+..++|+++.++.. +++|.. +|+++.-=+.+.++.+..+....- ..++|.. +- ..++.+..=
T Consensus 8 tl~la~ilLliG~~Lr~ki~~lqk~~---IPasvIgGli~~il~~~l~~~~~~-----~~~f~~~-l~---~~lm~~fF~ 75 (368)
T PF03616_consen 8 TLALASILLLIGKFLRAKIPFLQKLF---IPASVIGGLIFAILPLILGGFGGI-----SISFDTS-LQ---DFLMIIFFT 75 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHcc---CCchHHHHHHHHHHHHHHHhcCce-----EEEechh-HH---HHHHHHHHH
Confidence 45566677777766654 556665 998876666666665544422110 1233332 11 222222222
Q ss_pred hhhhCCCchhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhHhhhcccCcHHHHHHhcc--ccCCcchHH-HHHHHHh
Q 047772 105 QSGFSLSPKPFFSNFGAIVTFAIFGTFLAS--MVTGILVYLGGVMFLMYRLPFVECLMFGA--LISATDPVT-VLSIFQE 179 (498)
Q Consensus 105 ~~G~~l~~~~l~~~~~~i~~la~~g~~i~~--~~~~~~~~~~~~~~~~~~~~~~~all~ga--ilsaTdpv~-v~~il~~ 179 (498)
..|+..+.+.+||-++.+..+......+.. -++|..+- ..++++....++.|+ ...-+-+++ .-+++++
T Consensus 76 ~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la------~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~ 149 (368)
T PF03616_consen 76 TIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLA------KLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEE 149 (368)
T ss_pred HHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhCCCchHHHHhccccccCCccHHHHHHHHHHH
Confidence 458888999999988877766554432221 11222111 245666666666664 222233333 3345555
Q ss_pred h-CC
Q 047772 180 L-GT 182 (498)
Q Consensus 180 ~-~~ 182 (498)
. |.
T Consensus 150 ~~G~ 153 (368)
T PF03616_consen 150 LYGW 153 (368)
T ss_pred hcCh
Confidence 4 44
No 46
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=92.50 E-value=1.6 Score=43.37 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCC--CchhhHhhHHHHHHHHHHHHH
Q 047772 54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSL--SPKPFFSNFGAIVTFAIFGTF 131 (498)
Q Consensus 54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l--~~~~l~~~~~~i~~la~~g~~ 131 (498)
....+.+++.|+++|.+.+-... ..++| ++.+.+.-.|++.+.+-|+.- +.+++||..+....+++..=+
T Consensus 176 ~~~sv~LLlGgliIG~~~g~~g~-------~~i~p-f~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pl 247 (327)
T PF05982_consen 176 TNKSVVLLLGGLIIGFLAGPEGV-------ESIKP-FFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPL 247 (327)
T ss_pred cCchHHHHHHHHHHhheeCccch-------hhccc-hhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHH
Confidence 34568899999999976653211 12222 222222578888888888874 356777777777777765544
Q ss_pred HHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhc-----ccchhhHHHHHH
Q 047772 132 LASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGES-----VLNDAMAISLYR 206 (498)
Q Consensus 132 i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs-----~lnD~~aivl~~ 206 (498)
+...+...+. ...+++...+.+++.+.++-+=+++-+.+| ..+|+--..+-.+.| =+|=.+++++|.
T Consensus 248 i~a~ig~~lg-------~~~gls~Gg~~llavLaASASYIAvPAAmR-~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~ 319 (327)
T PF05982_consen 248 INALIGIGLG-------WLLGLSPGGAVLLAVLAASASYIAVPAAMR-AAIPEANPSLYLTASLGITFPFNILIGIPLYY 319 (327)
T ss_pred HHHHHHHHHH-------HHhCCCCccHHHHHHHHhhHhhhhhhHHHH-hhCcccCchHHHHHHHhcccchhHhhccHHHH
Confidence 4443333332 357899999999998888877777755554 446655444444444 367777777776
Q ss_pred HHHH
Q 047772 207 TMSL 210 (498)
Q Consensus 207 ~~~~ 210 (498)
-+..
T Consensus 320 ~la~ 323 (327)
T PF05982_consen 320 ALAQ 323 (327)
T ss_pred HHHH
Confidence 5544
No 47
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.29 E-value=1.6 Score=39.46 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCC---CcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCc--
Q 047772 38 LSFVLGHVLRRHKF---YYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSP-- 112 (498)
Q Consensus 38 ~~~~~~~l~~~~~~---~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~-- 112 (498)
++..++.++-|.++ ..+-...+.++.|+++|.+....+.. . ..-.++.+- +++|...++..|++--.
T Consensus 4 l~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~--~---~~~~~~~l~---~~GL~lFl~~VGl~aG~~F 75 (169)
T PF06826_consen 4 LGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIF--L---PISAPSFLR---QLGLALFLAAVGLSAGPGF 75 (169)
T ss_pred HHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCC--C---CccHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33444555545443 23677779999999999764321110 0 011123455 78888889988888764
Q ss_pred -hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcH
Q 047772 113 -KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPF 155 (498)
Q Consensus 113 -~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (498)
+.+|++..+...+++.-+.++.++.....+ +.+++++
T Consensus 76 ~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~------~~~~l~~ 113 (169)
T PF06826_consen 76 FSSLKRGGLKLLLLGVIITLVPLLIALVIGR------YLFKLNP 113 (169)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHcCCCH
Confidence 456677777777777666666655544443 3566664
No 48
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=92.28 E-value=4.7 Score=41.79 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
+..+.+.+.++..+...+++.+ ..+|.-+..++.|+++..+....+..+ + .+-.-+.+. .+.|-+.+-.+=.
T Consensus 221 l~~i~iai~iG~~i~~~l~~~~-~~lP~fv~am~~giiirni~~~~~~~~-~---~~~~i~~I~---~~sLdlfl~~Alm 292 (398)
T TIGR00210 221 IALIAVCLLVGYELNDLVAKTA-LMLPTFVWCLFVGVILRNPLSFKKFPW-V---AERAVSVIG---NVSLSLFLAIALM 292 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHHHHHhCccc-c---chHHHHHHH---HHHHHHHHHHHHH
Confidence 4455555556666667776532 349999999999999997665432211 1 011223444 7788888888889
Q ss_pred CCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHH----HhccccCCcchH--HHHHHHHhhCC
Q 047772 109 SLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECL----MFGALISATDPV--TVLSIFQELGT 182 (498)
Q Consensus 109 ~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~al----l~gailsaTdpv--~v~~il~~~~~ 182 (498)
++++.++.+++.+.+.+.+.+++++.+..-++.+ ...+-++..|. ..|--+.+|-.+ -.-++-+++|-
T Consensus 293 sL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~f------r~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 293 SLQLWELADLAGPIALILLVQVMFMALYAIFVTF------RLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 9999999999999999999999988766655554 33444444444 344444444333 33345578885
Q ss_pred ChhhHH-HHhhhcccchhhHHHHHHH
Q 047772 183 DMNLYA-LVFGESVLNDAMAISLYRT 207 (498)
Q Consensus 183 ~~~l~~-ll~gEs~lnD~~aivl~~~ 207 (498)
.++-.- +=.--+.+-|..-.++...
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~ 392 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQ 392 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHH
Confidence 444222 2223344555554444333
No 49
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.62 E-value=9 Score=34.13 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchh
Q 047772 35 MLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKP 114 (498)
Q Consensus 35 lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~ 114 (498)
.+.++.+.+.++++.| +|. ..++..++.+...+..... ... -|..+. ..+...+-...|.+++.+.
T Consensus 3 ~~~~~~~~g~l~~~l~---~Pa--~~llG~mi~~~~~~~~~~~-----~~~-~P~~~~---~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 3 LLLVGLAGGLLASLLG---LPA--AWLLGPLLAGAVLSLAGGL-----EIT-LPPWLL---ALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHC---CCc--HHHHHHHHHHHHHHhcCCc-----cCC-CCHHHH---HHHHHHHHHHHHccCCHHH
Confidence 4567788889999999 663 3334444444333322110 011 233555 6788888889999999877
Q ss_pred hHhhHHHHHH--HHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChh
Q 047772 115 FFSNFGAIVT--FAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMN 185 (498)
Q Consensus 115 l~~~~~~i~~--la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~ 185 (498)
+++..+.... .....++..+.+.+...+ ...++++.++++ |..=.. -.....+-+++|.+.+
T Consensus 69 l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~------~~~~~~~~ta~L-a~~PGG--l~~m~~~A~~~gad~~ 132 (156)
T TIGR03082 69 LAELKRLWPAALLSTVLLLALSALLAWLLA------RLTGVDPLTAFL-ATSPGG--ASEMAALAAELGADVA 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCHHHHHH-HhCCch--HHHHHHHHHHhCCCHH
Confidence 7654443332 222233333444444444 467899998875 322222 1222233356666554
No 50
>COG2431 Predicted membrane protein [Function unknown]
Probab=91.38 E-value=0.66 Score=44.66 Aligned_cols=90 Identities=21% Similarity=0.236 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCC---ch--hhHhhHHHHHHHHHHHH
Q 047772 56 EASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLS---PK--PFFSNFGAIVTFAIFGT 130 (498)
Q Consensus 56 ~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~---~~--~l~~~~~~i~~la~~g~ 130 (498)
..++.++.|+++|...+-. .+ .++.-. ++.|..++|..|+++. .. +.+=| |+.+.+++ -+
T Consensus 108 k~~~~vl~g~~~G~l~~~~---------~~-~~~~a~---~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~-i~ 172 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF---------LN-FPENAS---EYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAF-IT 172 (297)
T ss_pred HHHHHHHHHHHHHHHhccc---------cc-CchhHH---HHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHH-HH
Confidence 5677888899998765432 11 133444 7888899999999988 22 22223 44455554 55
Q ss_pred HHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccC
Q 047772 131 FLASMVTGILVYLGGVMFLMYRLPFVECLMFGALIS 166 (498)
Q Consensus 131 ~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gails 166 (498)
+++.+..|.... +..++|+.+++.+++-..
T Consensus 173 ilssliGG~iaa------~~l~lpl~~~lAmasG~G 202 (297)
T COG2431 173 LLSSLIGGLIAA------FLLDLPLTTGLAMASGFG 202 (297)
T ss_pred HHHHHHHHHHHH------HHHhccHHHHHHHHhccc
Confidence 677777777766 567899988888776544
No 51
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=90.75 E-value=2 Score=43.32 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhC-CCchhhHhh
Q 047772 40 FVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFS-LSPKPFFSN 118 (498)
Q Consensus 40 ~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~-l~~~~l~~~ 118 (498)
+.++.+++. ++.+|..+..++.|+++-.....+.. +.+...--..++. .-...+++.-.|+. .|++++.+.
T Consensus 192 y~~g~l~~~--~~~Ih~~v~mII~~vi~k~~gllp~~---i~~~a~~~~~F~~---~~lt~~ll~giGla~t~l~~L~~a 263 (347)
T TIGR00783 192 FMAGGLLKS--FPGIPAYAFMILIAAALKAFGLVPKE---IEEGAKMLSQFIS---KNLTWPLMVGVGVSYIDLDDLVAA 263 (347)
T ss_pred HHHHHHHHh--cccCCHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHH---HHHHHHHHHHcccccCCHHHHHHH
Confidence 344444442 34589999999999998754433221 1110111112344 56778888888988 899999998
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc-CcHHHHHHhccccC---CcchHHHHHHHHhhC
Q 047772 119 F-GAIVTFAIFGTFLASMVTGILVYLGGVMFLMYR-LPFVECLMFGALIS---ATDPVTVLSIFQELG 181 (498)
Q Consensus 119 ~-~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~all~gails---aTdpv~v~~il~~~~ 181 (498)
. .+.+.+.+.++ +...+.+.++- ..++ +|...|+.-|-|.+ -|-=+++++.-+|++
T Consensus 264 ~t~~~vviiv~~V-lg~ii~s~lvG------KllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 264 LSWQFVVICLSVV-VAMILGGAFLG------KLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred hchhHhhhHHHHH-HHHHHHHHHHH------HHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 8 55444444333 33333333222 2445 45555555453433 355566666666666
No 52
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=89.77 E-value=7.8 Score=38.69 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHH----hhccchhHHHHHHHHHhhc-cccccCChhHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcc
Q 047772 243 CLFVLFPYFSYMLAE----GLGLSGIVSILFTGIVMKR-YTFSNLSENSQRFVSAFFHLIS-SLAETFVFIYMGFDIAME 316 (498)
Q Consensus 243 ~~~l~~~~~~~~lae----~~g~Sgilav~~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~F~~iG~~l~~~ 316 (498)
.++++++..++++++ ..+.+..+=+.+.|+.++| ..... +..+.-.+..+ .+++.-+ +++|..++..
T Consensus 4 ~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~------~~~~~Gi~~~~k~~Lr~gI-VLlG~~l~~~ 76 (305)
T PF03601_consen 4 LLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLP------ARFKPGIKFSSKKLLRLGI-VLLGFRLSFS 76 (305)
T ss_pred HHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCc------HHHHhHHHHHHHHHHHHHH-HHHCccccHH
Confidence 466778888888888 3688999999999999998 32211 11122122211 2333322 6778887655
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhhhccCCCccchhhHH
Q 047772 317 KHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIF 396 (498)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~~~~~~~~~~~~~i~ 396 (498)
+..-..+..++...+...+.=....++..++ -|++++....++-+----.++.+.|.... ++.++++.-.
T Consensus 77 ~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~--------~~l~~~~~~Lia~GtsICG~SAi~A~a~~--i~a~~~~~a~ 146 (305)
T PF03601_consen 77 DILALGWKGLLIIIIVVILTFLLTYWLGRRL--------FGLDRKLAILIAAGTSICGASAIAATAPV--IKAKEEDVAY 146 (305)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHhhcccchHHHHHHHccc--ccCCCCceee
Confidence 4211111112222222222222222233232 36677777776644333444444444332 2222223222
Q ss_pred hhhhhhehhhHhhhhhcHHHHHHHcccc
Q 047772 397 SATTVIVVLTVLLIGGSTGTMLEALQVV 424 (498)
Q Consensus 397 ~~~~~vvl~T~~i~g~~~~~l~~~l~~~ 424 (498)
.. ..+.++.++ .=...|.+.+.+++.
T Consensus 147 av-a~V~lfg~v-am~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 147 AV-ATVFLFGTV-AMFLYPLLGHALGLS 172 (305)
T ss_pred ee-hHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 22 222222221 222367777787775
No 53
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=89.68 E-value=1.4 Score=40.47 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=49.3
Q ss_pred ccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHH
Q 047772 97 FLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSI 176 (498)
Q Consensus 97 ~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~i 176 (498)
+.+..++|..|++++.+++++.+++.-.+. .+.+...++.-.+.+..+. .. ++....+..|.++.+..|.+..+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~--~~--~~~~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAW--LL--LPLSPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH---HH--TT--HHHHHHHHHHHHS-B-THHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHH--HH--hcCCHHHHHHHHHHhcCCcHHHHH
Confidence 356789999999999999998776644333 2444545544444442210 12 333334555555544444444443
Q ss_pred HHhhCCChhhHHHHhhhcccchhhHHHHHHHH
Q 047772 177 FQELGTDMNLYALVFGESVLNDAMAISLYRTM 208 (498)
Q Consensus 177 l~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~ 208 (498)
.-..-.+.+.. +..+-..+|..+++++.=..
T Consensus 77 ~~t~l~~Gd~~-ls~~lt~istll~~~~~P~~ 107 (187)
T PF01758_consen 77 VFTYLAGGDVA-LSVSLTLISTLLAPFLMPLL 107 (187)
T ss_dssp HHHHHTT--HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcc-cccceeeHHHHHHHHHHHHH
Confidence 32222223322 33333445555555443333
No 54
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=89.49 E-value=4.3 Score=40.26 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=44.8
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG 162 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g 162 (498)
.+.+|+..|.-|.++|++++.+...+.+.+++..++++.... |+.+ ..++.+-..+++.|
T Consensus 195 ~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~----~~i~---rllg~~~~~g~li~ 254 (312)
T PRK12460 195 PLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFN----IFAD---RLVGGTGIAGAAAS 254 (312)
T ss_pred eEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHH----HHHH---HHhCCChhHHHHHH
Confidence 578899999999999999999999998888876655543332 3222 23478877788888
No 55
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=89.14 E-value=29 Score=35.58 Aligned_cols=133 Identities=22% Similarity=0.235 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhcCCCcCChHHHHHHHHHHHHHhhhcc-CcccccccccccCh---hhhhhcccccch
Q 047772 28 GILLQIMMLVLSFVLG---HVLRRHKFYYLPEASASLLIGLIVGALANIS-NTETNISAYLLLDF---EFYLQHFSFLDS 100 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~---~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~-~~~~~i~~~~~~~~---~~~~~~~~~~L~ 100 (498)
.+....++++++.... .++||+. +|+++.-=+...++++..... ..+ .++|. +.|+
T Consensus 10 tl~~a~lllllG~~l~kki~fl~k~~---IPepVvgG~i~ail~~~~~~~~~~~------~~fd~~l~~~fm-------- 72 (404)
T COG0786 10 TLILAILLLLLGRFLVKKIKFLKKYC---IPEPVVGGLIFAILLLLLHGFGGVS------LNFDTSLQDVFM-------- 72 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHcc---CCcchHHHHHHHHHHHHHHhcceEE------EeCCcccccHHH--------
Confidence 3444455555555554 3455565 999988777777777655421 111 22222 2232
Q ss_pred HHhh-hhhhCCCchhhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhHhhhcccCcHHHHHHhccccCC--c-chHHHH
Q 047772 101 FRHT-QSGFSLSPKPFFSNFGAIVTFAIFGTFLASM--VTGILVYLGGVMFLMYRLPFVECLMFGALISA--T-DPVTVL 174 (498)
Q Consensus 101 ~ilF-~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~--~~~~~~~~~~~~~~~~~~~~~~all~gailsa--T-dpv~v~ 174 (498)
.+.| ..|++.+.+.+||-+++...+......+... .++.... ...+.+...+++-|++--. + ..++..
T Consensus 73 liFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la------~~lgidpl~gllagsIsl~GGHGtaAA~~ 146 (404)
T COG0786 73 LIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLA------KLLGLDPLIGLLAGSISLVGGHGTAAAWG 146 (404)
T ss_pred HHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH------HHcCccHHHHHHhcceeecCCCchHHHHH
Confidence 2333 4499999999999999988777655444322 1222221 3567788888888765422 2 234445
Q ss_pred HHHHhhCCC
Q 047772 175 SIFQELGTD 183 (498)
Q Consensus 175 ~il~~~~~~ 183 (498)
+.+++.|.+
T Consensus 147 ~~f~~~G~~ 155 (404)
T COG0786 147 PTFEDLGAE 155 (404)
T ss_pred HHHHhcCCc
Confidence 566666543
No 56
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=89.02 E-value=4.7 Score=41.65 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
+++...+..++.+++.++ + +|....+++.=+++- ..+..+.+ +++-..--.+++. .-..+++|+-.|.
T Consensus 252 llla~~~y~~G~ll~~~i---~---ih~~a~mIi~~~i~K-~~~lvP~~--~e~~a~~~~~f~~---~~lt~~lLvgiGv 319 (414)
T PF03390_consen 252 LLLACSFYILGVLLSKLI---G---IHAYAWMIILVAIVK-AFGLVPES--LEEGAKQWYKFFS---KNLTWPLLVGIGV 319 (414)
T ss_pred HHHHHHHHHHHHHHHHhc---C---CcHHHHHHHHHHHHH-HhCcCCHH--HHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 344444444444444433 4 898888777666654 33332211 1100111122444 7889999999999
Q ss_pred C-CCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhcc-ccC---CcchHHHHHHHHhhC
Q 047772 109 S-LSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGA-LIS---ATDPVTVLSIFQELG 181 (498)
Q Consensus 109 ~-l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~ga-ils---aTdpv~v~~il~~~~ 181 (498)
. +|++++.+.+.....+-+..+++...+.+.+.- ...++-..++-+.+. |.+ -|-=+++++--+|++
T Consensus 320 ~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG------~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 320 AYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVG------KLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred hhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH------HHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 9 999999998877766666666666655555442 355655555544444 433 255566777777776
No 57
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=87.90 E-value=29 Score=34.20 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=44.4
Q ss_pred cchHHhhhhhhCCCchhhHhhHHH--HHHHHH-HHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHH
Q 047772 98 LDSFRHTQSGFSLSPKPFFSNFGA--IVTFAI-FGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVL 174 (498)
Q Consensus 98 ~L~~ilF~~G~~l~~~~l~~~~~~--i~~la~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~ 174 (498)
.+..++|..|.+++.+++++..++ ....++ ...++..++...+.+ .++.+ ..+..|.++.+.-|.++.
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~-------~~~l~--~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAK-------VFKLP--PELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-------HhCCC--HHHHHHHHheeeCCCchH
Confidence 488899999999999999887762 222222 233333333322222 23333 445566655555555554
Q ss_pred HHH--HhhCCChhhH
Q 047772 175 SIF--QELGTDMNLY 187 (498)
Q Consensus 175 ~il--~~~~~~~~l~ 187 (498)
+.. +..|-+.++.
T Consensus 84 s~v~t~~~~gn~~la 98 (286)
T TIGR00841 84 SNVFTYLLKGDMALS 98 (286)
T ss_pred HHHHHHHhCCCHhhh
Confidence 433 3444444443
No 58
>PRK04972 putative transporter; Provisional
Probab=87.63 E-value=7.3 Score=42.38 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
++.+++.+.++.+++.+ |++-..+-...+.+++|+++|.+.. ..++ ... +++|...+|..|+
T Consensus 14 ~~~lf~~i~lG~~lG~i--~~~~~~LG~~~g~L~vgl~~g~~~~------------~~~~-~~~---~~gl~lF~~~vG~ 75 (558)
T PRK04972 14 ILLLFVVLALGLCLGKL--RLGSIQLGNSIGVLVVSLLLGQQHF------------SINT-DAL---NLGFMLFIFCVGV 75 (558)
T ss_pred hHHHHHHHHHHHhhhce--EEeeEecCcchHHHHHHHHHHhCCC------------CCCh-HHH---HHHHHHHHHHHhh
Confidence 34444444444444443 1111236677799999999995321 1222 344 6888889999999
Q ss_pred CCCc---hhhHhhHHHHHHHHHHHHHHHHHHH
Q 047772 109 SLSP---KPFFSNFGAIVTFAIFGTFLASMVT 137 (498)
Q Consensus 109 ~l~~---~~l~~~~~~i~~la~~g~~i~~~~~ 137 (498)
+--. +.+|++..+...+++..+++..++.
T Consensus 76 ~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~ 107 (558)
T PRK04972 76 EAGPNFFSIFFRDGKNYLMLALVMVGSALVIA 107 (558)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8774 4555655666666665555544443
No 59
>PRK05326 potassium/proton antiporter; Reviewed
Probab=87.48 E-value=5.5 Score=43.46 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=36.6
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhhhcccCcHHHHHHhccc
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLA-SMVTGILVYLGGVMFLMYRLPFVECLMFGAL 164 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~-~~~~~~~~~~~~~~~~~~~~~~~~all~gai 164 (498)
.++.+++-+..|+.+|++.+.+.....+.+++..+++. .+.+ ++.. ..+++++.+++.+|-.
T Consensus 277 ~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v-~l~~------~~~~~~~~e~~~i~~~ 339 (562)
T PRK05326 277 WLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAV-FLSL------LPFRFNLREKLFISWV 339 (562)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------ccCCCCHhhhheeeee
Confidence 46667777778999998888766555444443222221 2111 1111 3457888888887753
No 60
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=86.92 E-value=14 Score=37.37 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHh-----hccchhHHHHHHHHHhhcc
Q 047772 243 CLFVLFPYFSYMLAEG-----LGLSGIVSILFTGIVMKRY 277 (498)
Q Consensus 243 ~~~l~~~~~~~~lae~-----~g~Sgilav~~~Gl~~~~~ 277 (498)
.+++.+++.++++++. .+.+..+=+...|++++|.
T Consensus 8 ~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 8 LQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 4556777788888775 4789999999999999984
No 61
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=85.19 E-value=34 Score=32.32 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
++.+.+-++.-.+..++.||.|-+.+-+.....+..+.+=...+.+...+ ..+.+.+.. .+.-...-|..=+
T Consensus 8 ~f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y------~~g~~~i~~--lLgPAtVAlAvPL 79 (230)
T COG1346 8 LFGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDY------MKGGQWINF--LLGPATVALAVPL 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHH------hcccHHHHH--HHHHHHHHHhhHH
Confidence 44455555555666777888874444433333333222222223221110 111112210 1222233344444
Q ss_pred CCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHH--HHHHhccccCCcchHHHHHHHHhhCCChh
Q 047772 109 SLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFV--ECLMFGALISATDPVTVLSIFQELGTDMN 185 (498)
Q Consensus 109 ~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~--~all~gailsaTdpv~v~~il~~~~~~~~ 185 (498)
.=+++.+||||++++.-.+.|..+.......+.. .++++-. .+++ -=|.|.|++. .+-++.|=.+.
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak-------~~g~~~~~~~Sl~---PkSvTTpiAm-~vs~~iGGip~ 147 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAK-------LFGLSPELILSLL---PKSVTTPIAM-EVSESIGGIPA 147 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHhc---ccccccHHHH-HHHHhcCCchH
Confidence 4578999999999998888888877666555554 3444432 2222 1245777765 67777774333
No 62
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=84.98 E-value=10 Score=38.06 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
...+.+++..+...+++.+|.| +|. ..++..++.+...+..... .... |+.+. ..+...+=...|.
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~---iPa--~~llGpml~~a~~~~~~~~-----~~~~-P~~l~---~~aqv~iG~~iG~ 219 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLR---IPA--PWLLGPMLVSAILNLFGGP-----SFSL-PPWLV---NAAQVLIGASIGS 219 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCc--HHHHHHHHHHHHHHHHhCC-----CCCC-CHHHH---HHHHHHHHHHHHc
Confidence 3445666677888999999999 663 3333333333332222100 0122 34555 5777778888999
Q ss_pred CCCchhhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHH
Q 047772 109 SLSPKPFFSNFGAIVTFA--IFGTFLASMVTGILVYLGGVMFLMYRLPFVECLM 160 (498)
Q Consensus 109 ~l~~~~l~~~~~~i~~la--~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all 160 (498)
+++.+.+++..+...... ....+..+...+...+ ...++|+.++++
T Consensus 220 ~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~------~~~~~~~~t~~L 267 (318)
T PF05145_consen 220 RFTRETLRELRRLLPPALLSTLLLLALCALFAWLLS------RLTGIDFLTALL 267 (318)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCHHHHHH
Confidence 999877765544333221 1222233334444443 356888888776
No 63
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=84.39 E-value=16 Score=37.31 Aligned_cols=163 Identities=10% Similarity=0.153 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhC
Q 047772 30 LLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFS 109 (498)
Q Consensus 30 l~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~ 109 (498)
.++.+.+.++......++..+ ..+|.-+..+.+|+++-.+.......+ + ..-.-+.+. .+.|-..+=.+=.+
T Consensus 225 ~~i~i~~~vG~~i~~~l~~~~-~~lP~fv~~lfvgiIvrni~~~~~~~~-v---~~~~v~~ig---~vsL~lflamALmS 296 (404)
T COG0786 225 AIIAICLAVGKIINQLLKSLG-LALPLFVMCLFVGVILRNILDLLKKYR-V---FRRAVDVIG---NVSLSLFLAMALMS 296 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHhHHHHhcccc-c---cHHHHHHHh---hhHHHHHHHHHHHH
Confidence 344444555566666666643 358999999999999987654432211 0 011123444 67777777777778
Q ss_pred CCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHh----ccccCC--cchHHHHHHHHhhCCC
Q 047772 110 LSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMF----GALISA--TDPVTVLSIFQELGTD 183 (498)
Q Consensus 110 l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~----gailsa--Tdpv~v~~il~~~~~~ 183 (498)
+++-++-+.+.+.+.+-.++++...+..-++.+ -..|-++..+.+. |--+.+ |.-+-..++-+++|..
T Consensus 297 lkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtf------r~mG~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S 370 (404)
T COG0786 297 LKLWELADLALPLLVILAVQTIVMALFAIFVTF------RLMGKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPS 370 (404)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH------HHhCcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCCC
Confidence 888888888888888777787776554433333 3556666666662 223333 3333333344566643
Q ss_pred hh--hHHHHhhhcccchhhHHHHHHH
Q 047772 184 MN--LYALVFGESVLNDAMAISLYRT 207 (498)
Q Consensus 184 ~~--l~~ll~gEs~lnD~~aivl~~~ 207 (498)
++ +..=+.| +.+-|.+...+...
T Consensus 371 ~kAf~ivPiVG-Affid~ina~ii~~ 395 (404)
T COG0786 371 HKAFIVVPIVG-AFFIDIINALIITG 395 (404)
T ss_pred ceeeEEeehHH-HHHHHHHHHHHHHH
Confidence 33 2223445 77777776444333
No 64
>PRK03818 putative transporter; Validated
Probab=83.46 E-value=11 Score=40.92 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChh---hhhhcccccchHHhh
Q 047772 28 GILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFE---FYLQHFSFLDSFRHT 104 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~L~~ilF 104 (498)
+++.+++.+.++.+++.+ |-.++ .+- +.+.+++|+++|.+..... ...++. .+- +++|...+|
T Consensus 7 ~~~~l~l~i~lG~~lG~i-~i~g~-~LG-~~g~L~~gl~~G~~~~~~~--------~~~~~~~~~~~~---~~gl~lFv~ 72 (552)
T PRK03818 7 TVSILALVAVVGLWIGNI-KIRGV-GLG-IGGVLFGGIIVGHFVSQFG--------LTLDSDMLHFIQ---EFGLILFVY 72 (552)
T ss_pred HHHHHHHHHHHHHhhcce-EECCC-ccc-cHHHHHHHHHHhccccccC--------cccChHHHHHHH---HHHHHHHHH
Confidence 355555556666555542 11121 233 4788888998885321111 112221 233 789999999
Q ss_pred hhhhCCCch---hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcH
Q 047772 105 QSGFSLSPK---PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPF 155 (498)
Q Consensus 105 ~~G~~l~~~---~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 155 (498)
..|++--.. .+|++..+...+++..+++..++ ++.++ +.+++++
T Consensus 73 ~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~ 119 (552)
T PRK03818 73 TIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV-TAILH------KLFGIPL 119 (552)
T ss_pred HHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHH------HHhCCCH
Confidence 999988754 55566666666666555555444 33333 3456654
No 65
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=82.57 E-value=16 Score=37.15 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=78.1
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh
Q 047772 30 LLQIMMLVLS-FVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF 108 (498)
Q Consensus 30 l~~~~lL~~~-~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~ 108 (498)
.-...++..+ +.+++++.|+- .+|..+.+++.=..+=...+..+.+ +.+-..--.++|. .=..-++|+..|.
T Consensus 266 ~g~G~llA~~lf~~g~il~kf~--~~P~~va~MIil~a~lk~~nlvp~~--i~~GA~~l~~F~s---k~~t~~Lm~giGv 338 (438)
T COG3493 266 MGAGMLLACTLFMAGGILGKFI--GLPGPVAFMIILVAILKAANLVPKE--IEEGAKQLSQFFS---KNLTWPLMAGIGV 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHHH---HhhHHHHHHhhhh
Confidence 3333333333 55666666653 2687774443333222333333221 1110011122444 5566789999999
Q ss_pred C-CCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc-CcHHHHHHhccccCC---cchHHHHHHHHhhC
Q 047772 109 S-LSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYR-LPFVECLMFGALISA---TDPVTVLSIFQELG 181 (498)
Q Consensus 109 ~-l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~-~~~~~all~gailsa---Tdpv~v~~il~~~~ 181 (498)
. .|+++.-+.......+-...+++.....+.+.- .+.+ +|...|..-|.|.+. |-=+++++--++++
T Consensus 339 ~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~g------rl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~ 410 (438)
T COG3493 339 AYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVG------RLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADRME 410 (438)
T ss_pred ccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH------HHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence 8 899999877776666666666666666555443 3445 556666666666654 66677777777766
No 66
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=82.05 E-value=60 Score=32.67 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=57.2
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLS 175 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~ 175 (498)
.+++..+|+--=.++|++++++..+..=.+. +..+.++++.=+.++..+..+ ....| .+..|.++-.-.|-....
T Consensus 54 ai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwii~P~lm~~la~~f-l~~~p---ey~~GlILlglApC~aMV 128 (342)
T COG0798 54 AIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWIIGPLLMFALAWFF-LPDEP---EYRAGLILLGLAPCIAMV 128 (342)
T ss_pred HHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHH-hCCCH---HHHHHHHHHHhhhhHHHH
Confidence 3566667777777889888775444322222 233445544444444332222 23344 445555554444444433
Q ss_pred HH-HhhCCChhhHHHHhhhcccchhhHHHHHHHHHHHH
Q 047772 176 IF-QELGTDMNLYALVFGESVLNDAMAISLYRTMSLVR 212 (498)
Q Consensus 176 il-~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~ 212 (498)
+. .++ .+.-.+.-..--.+||...+++|.....+.
T Consensus 129 ivw~~L--a~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~ 164 (342)
T COG0798 129 IVWSGL--AKGDRELTLVLVAFNSLLQIVLYAPLGKFF 164 (342)
T ss_pred HHHHhh--ccCcHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222 222233334445689999998887766543
No 67
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=80.65 E-value=41 Score=31.95 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHh--hhhhhCCCch
Q 047772 36 LVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRH--TQSGFSLSPK 113 (498)
Q Consensus 36 L~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~il--F~~G~~l~~~ 113 (498)
+..-....++-||.|.+.+++.+...+.-+.+=...+.+..++ .-..+.+ ...|.|-. +..=+.-+++
T Consensus 12 l~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~~i~Y~~Y------~~g~~~l----~~lLgPAtVALAvPLY~~~~ 81 (226)
T TIGR00659 12 LLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLVGIPYESY------MLGGGVI----NDLLGPAVVALAIPLYKQLP 81 (226)
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhCCCHHHH------HHhhHHH----HHhhHHHHHHHHHHHHHhHH
Confidence 3333455567777787777666555553333322333221110 1112222 12232222 2222334678
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhh
Q 047772 114 PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNL 186 (498)
Q Consensus 114 ~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l 186 (498)
.+|||+++++.-...|.+++.+....+.+ .+|.+-....-+ +-=|.|.|.+. ++-++.|-.+.+
T Consensus 82 ~lk~~~~~Il~~~~~G~~~~~~s~~~la~-------~lg~~~~i~~Sl-~pkSvTtpiAm-~vs~~iGG~~sL 145 (226)
T TIGR00659 82 QIKKYWKEIILNVAVGSVIAIISGTLLAL-------LLGLGPEIIASL-LPKSVTTPIAM-HVSEMIGGIPAV 145 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCcCHHHHHHh-hhHHhhHHHHH-HHHHHhCChHHH
Confidence 99999999988777787776655554444 345543222111 11234666655 676776644433
No 68
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=80.25 E-value=15 Score=41.33 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 047772 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAME 316 (498)
Q Consensus 244 ~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~ 316 (498)
+++.+++++.+++|.+.++..+-.+++|++++......+.+..-...+...-.++.+.-.+.-+-.|+.++..
T Consensus 21 ~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~ 93 (810)
T TIGR00844 21 FSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK 93 (810)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4667888999999999999999999999999976544333321101112222255555556566667776644
No 69
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=79.99 E-value=63 Score=32.05 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=92.2
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----hcccCcHHHHHHhccccCCcchH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMF----LMYRLPFVECLMFGALISATDPV 171 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~----~~~~~~~~~all~gailsaTdpv 171 (498)
.-.+...+|..|-++|.|.-.+..++-..+...=+.+.+++.-.+.++.|... +.+| ...+.+=+.++.|...
T Consensus 48 ~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~G---lS~LAiiaA~~nsNgg 124 (314)
T TIGR00793 48 VPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAG---LSTLALVAAMDMTNGG 124 (314)
T ss_pred HHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceec---cHHHHHHHHHhCCcHH
Confidence 45677889999999999987777666555544344443333222223211110 0112 2345555778888999
Q ss_pred HHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Q 047772 172 TVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYF 251 (498)
Q Consensus 172 ~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~~~~~~~~l~~~~~ 251 (498)
...++..|+|-+++..... -.-+||+=-+.+ +.++.... ....+... +.
T Consensus 125 LY~aL~~qyGd~~D~gA~~--i~sl~~GPf~TM--i~LG~sGl--A~ip~~~l-------------------v~------ 173 (314)
T TIGR00793 125 LYASIMQQYGTKEEAGAFV--LMSLESGPLMTM--VILGTAGI--ASFEPHVF-------------------VG------ 173 (314)
T ss_pred HHHHHHHHcCCHhhhhhhh--hhhhccCcHHHH--HHHhhccC--CCCCHHHH-------------------HH------
Confidence 9999999998766554332 223455432211 11111110 01111111 01
Q ss_pred HHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047772 252 SYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEK 317 (498)
Q Consensus 252 ~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~ 317 (498)
.+-=++.|++++|..+ ..+++...-..+.-+++-+-+|..++..+
T Consensus 174 ------------~ilPlliG~ilGNLD~---------~~r~fl~~~~~~lIpFf~FaLGaginl~~ 218 (314)
T TIGR00793 174 ------------AVLPFLVGFALGNLDP---------ELRDFFSKAVQTLIPFFAFALGNTIDLGV 218 (314)
T ss_pred ------------HHHHHHHHHHHhcCCH---------HHHHHhccCCCeeeehhhhhhcCCCCHHH
Confidence 1112456888887644 25666666667777888888998877654
No 70
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=79.63 E-value=45 Score=31.81 Aligned_cols=137 Identities=11% Similarity=0.134 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhh--hh
Q 047772 30 LLQIMMLVLSFVLGHVLRRH-KFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHT--QS 106 (498)
Q Consensus 30 l~~~~lL~~~~~~~~l~~~~-~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF--~~ 106 (498)
+.+.+-+..-.+..++.||. |.+.++..+...+.-+.+=...+.+..+ .....+.+. ..|.|-.- ..
T Consensus 11 ~~l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~~~~i~Y~~------Y~~g~~~l~----~lLgPAtVALAv 80 (232)
T PRK04288 11 FGILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLKLTGISYEE------YNIGGDIIS----FFLEPATIAFAI 80 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHhCCCHHH------HHhhhHHHH----HHHHHHHHHHHH
Confidence 34444444445666777777 7666655544433333222222322111 111222222 33333222 22
Q ss_pred hhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhcc-ccCCcchHHHHHHHHhhCCChh
Q 047772 107 GFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGA-LISATDPVTVLSIFQELGTDMN 185 (498)
Q Consensus 107 G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~ga-ilsaTdpv~v~~il~~~~~~~~ 185 (498)
=+.-+++.+||++++++.-.+.|.+++.+....+.+ .+|.+-. +..+- -=|.|.|++. .+-++.|-.+.
T Consensus 81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~-------~lgl~~~--~~~Sl~pKSVTtPIAm-~is~~iGG~ps 150 (232)
T PRK04288 81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK-------LIQLDNA--VMASMLPQAATTAIAL-PVSAGIGGIKE 150 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCcCHH--HHHHHhhHhhhHHHHH-HHHHHhCCcHH
Confidence 333468899999999998888888877666555554 3444432 11111 1234566555 67677764444
Q ss_pred h
Q 047772 186 L 186 (498)
Q Consensus 186 l 186 (498)
+
T Consensus 151 L 151 (232)
T PRK04288 151 I 151 (232)
T ss_pred H
Confidence 3
No 71
>COG2855 Predicted membrane protein [Function unknown]
Probab=78.51 E-value=29 Score=34.82 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcccc---chhH
Q 047772 247 LFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLI-SSLAETFVFIYMGFDIAMEKH---SWSH 322 (498)
Q Consensus 247 ~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~F~~iG~~l~~~~~---~~~~ 322 (498)
++........+..|++...=+.+.|++++++.+.. .+.+.-.+.- ..+++.- =++.|+.+..++. .++.
T Consensus 23 a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~------~~~~~GI~fs~k~LLr~g-IvLlG~~ltl~~i~~~G~~~ 95 (334)
T COG2855 23 AMLLGAFFFSIHLGLSALTLAILLGILLGILPQIP------AQTSAGITFSSKKLLRLG-IVLLGFRLTLSDIADVGGSG 95 (334)
T ss_pred HHHHhchHHhhhcCchHHHHHHHHHHHHhccccch------hhhccchhhhHHHHHHHH-HHHHcceeeHHHHHHcCccH
Confidence 33334444455677889999999999999665532 1111111111 1122222 2677887765432 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhheecc-CcchhHHHHHHhhhccCCCccchhhHHhhhhh
Q 047772 323 LGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYS-GLRGAMAFALALQSVHDLPEGHGQTIFSATTV 401 (498)
Q Consensus 323 ~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~rG~valala~~~~~~~~~~~~~~i~~~~~~ 401 (498)
+......+..-++..+...++ -+++++....++-+ +.=|+.|.+-. .+. ++.+.++.-..+. .
T Consensus 96 ----v~~~~~~l~~t~~~~~~lg~~--------lgld~~~a~Lia~GssICGasAiaA~-~pv--ika~~~eva~aIa-~ 159 (334)
T COG2855 96 ----VLIIAITLSSTFLFAYFLGKL--------LGLDKKLALLIAAGSSICGASAIAAT-APV--IKAEEEEVAVAIA-V 159 (334)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHccchhhHHHHHHHh-CCc--CCCCccccceehh-h
Confidence 111222222222222222222 36788887776644 34565554433 322 2333344433333 3
Q ss_pred hehhhHhhhhhcHHHHHHHcccc
Q 047772 402 IVVLTVLLIGGSTGTMLEALQVV 424 (498)
Q Consensus 402 vvl~T~~i~g~~~~~l~~~l~~~ 424 (498)
++++.++ .-...|.+..+++++
T Consensus 160 V~lfgti-a~llyP~l~~~l~l~ 181 (334)
T COG2855 160 VVLFGTL-AMLLYPLLYPLLGLS 181 (334)
T ss_pred HHHHHHH-HHHHHHHHHHHhCCC
Confidence 3333332 223368888888754
No 72
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=78.28 E-value=44 Score=33.84 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCC
Q 047772 32 QIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLS 111 (498)
Q Consensus 32 ~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~ 111 (498)
+.+....+.+.+.+.|+.| +|. ..++..++++...+.... + ..+. |..+. .+.-..+--..|.++|
T Consensus 190 ~~~l~~~~~~~g~l~~~lr---~Pa--~~ll~~l~l~a~v~~~~~---~--~~~l-P~wl~---~va~~~iG~~IG~~f~ 255 (352)
T COG3180 190 LLLLILAALLGGLLGKLLR---FPA--PTLLGPLLLGAIVHFGGG---I--TIQL-PAWLL---AVAQALIGALIGSRFD 255 (352)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCc--HHHHHHHHHHHHhhcccc---e--eeeC-CHHHH---HHHHHHHHHHHccccc
Confidence 5556666677888888888 774 556666666655543220 0 0122 33444 4555566677899999
Q ss_pred chhhHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHH
Q 047772 112 PKPFFSNFGA---IVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLM 160 (498)
Q Consensus 112 ~~~l~~~~~~---i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all 160 (498)
...++...+. ++..-+ +.++-+...+.+.+ ...+.|+.++++
T Consensus 256 ~~~l~~~~r~~~~~~v~ii-~l~~~~~~~a~ll~------~~~~i~~~ta~L 300 (352)
T COG3180 256 RSILREAKRLLPAILVSII-ALMAIAAGMAGLLS------WLTGIDLNTAYL 300 (352)
T ss_pred HHHHHHhHhhcchHHHHHH-HHHHHHHHHHHHHH------HhcCCCHHHHHH
Confidence 7776644443 333332 22222333333333 467888888776
No 73
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=76.64 E-value=1e+02 Score=32.12 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhcCCCcCChHHHHHHHH---HHHHHhhhccCcccccccccccChhhhhhcccccchH
Q 047772 28 GILLQIMMLVLSFVLGH---VLRRHKFYYLPEASASLLIG---LIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSF 101 (498)
Q Consensus 28 ~il~~~~lL~~~~~~~~---l~~~~~~~~iP~~~~~ll~G---iilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ 101 (498)
.+.+..++++++..+.. +++|+. +|+++.-=+.+ +.+++..... ...+|.+. - ..++.+
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~---IPapViGGll~al~l~l~~~~~~~--------~~~fd~~l-~---~~lm~~ 72 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFN---IPEPVVGGVLVALALLLIYKIFGT--------EVNFDFSL-R---DPLMLI 72 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHHhccE--------EEEcChhH-H---HHHHHH
Confidence 45566667777766653 566776 89876554443 3334322110 13344332 1 233333
Q ss_pred HhhhhhhCCCchhhHhhHHHHHHHHHHHH---HHHHHHHHHHHHHhhHhhhcccCcHHHHHHhcc--ccCCcchHHHH-H
Q 047772 102 RHTQSGFSLSPKPFFSNFGAIVTFAIFGT---FLASMVTGILVYLGGVMFLMYRLPFVECLMFGA--LISATDPVTVL-S 175 (498)
Q Consensus 102 ilF~~G~~l~~~~l~~~~~~i~~la~~g~---~i~~~~~~~~~~~~~~~~~~~~~~~~~all~ga--ilsaTdpv~v~-~ 175 (498)
.-=..|+.-+.+.+||-.++...+....+ +....+...+. ..++++...+++.|+ ...-+-+++.. +
T Consensus 73 fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la-------~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~ 145 (398)
T TIGR00210 73 FFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMA-------SLLGQAPLMGLLAGSITLSGGHGTGAAWSP 145 (398)
T ss_pred HHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCChHHHHHhhCccCCCCCcHHHHHHH
Confidence 33345888888999998888876665533 23332222222 256888888888653 33344444433 4
Q ss_pred HHHh-hCC
Q 047772 176 IFQE-LGT 182 (498)
Q Consensus 176 il~~-~~~ 182 (498)
.++| +|.
T Consensus 146 ~f~e~~G~ 153 (398)
T TIGR00210 146 VFYDNYGF 153 (398)
T ss_pred HHHHHcCc
Confidence 4434 454
No 74
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=75.02 E-value=48 Score=33.40 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=62.3
Q ss_pred cCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHH
Q 047772 53 YLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFL 132 (498)
Q Consensus 53 ~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i 132 (498)
++|. +++++.+++|...+..-++. ...-.+....|-+...-.+...+|..|-++|.|.-.+..++...+.+.=+.+
T Consensus 11 kiPg--g~m~vpl~~g~~i~tf~P~~--~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~ 86 (326)
T PRK05274 11 KIPG--GMMLVPLLLGALINTFAPGA--LYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTLLLTKFAV 86 (326)
T ss_pred cCCc--ceeeHHHHHHHHHHHhCCcc--eeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhHHHHHHHH
Confidence 5784 56777777776544322210 1112344434421112356678899999999998777666655554433333
Q ss_pred HHHHHHHHHHHhhHhhhcccCc--------HHHHHHhccccCCcchHHHHHHHHhhCCC
Q 047772 133 ASMVTGILVYLGGVMFLMYRLP--------FVECLMFGALISATDPVTVLSIFQELGTD 183 (498)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~--------~~~all~gailsaTdpv~v~~il~~~~~~ 183 (498)
.++ .+++.. -..+-. -...+-..+.+..+|+......+.+++-+
T Consensus 87 ~~~-~~~~~~------~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~ 138 (326)
T PRK05274 87 AAL-VGVIAG------KFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTK 138 (326)
T ss_pred HHH-HHHHhh------hcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 322 222221 112211 12234444666667776666666666544
No 75
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=74.81 E-value=1.2e+02 Score=31.98 Aligned_cols=117 Identities=6% Similarity=-0.021 Sum_probs=56.4
Q ss_pred cChhhhhhcccccchHHhhh-hh---hCC-CchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcH--HHH
Q 047772 86 LDFEFYLQHFSFLDSFRHTQ-SG---FSL-SPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPF--VEC 158 (498)
Q Consensus 86 ~~~~~~~~~~~~~L~~ilF~-~G---~~l-~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~--~~a 158 (498)
.-.+.|.++.....+|++|. .- .++ |.+++.|...+.+.+-...+.+.+++.-.+... +-++-.. ...
T Consensus 36 ~iG~iFl~lLkm~VvPLVf~Sii~gI~~l~~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l-----~~pg~g~~~~~~ 110 (428)
T PRK01663 36 PLGDGFIKLIKMIIAPIIFCTVVTGIAGMGDMKKVGRVGGKALLYFEIVSTIALIIGLIVVNV-----VQPGAGMNIDPA 110 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCcCcccc
Confidence 33457776665555555553 21 234 667788877776666555555544333222221 2232111 000
Q ss_pred HH----hccccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHHH
Q 047772 159 LM----FGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVR 212 (498)
Q Consensus 159 ll----~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~ 212 (498)
.. ...-....++......+.+. +|.+..+-+. =++.+++++|.++.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~-iP~Nif~ala----~gnvL~vIvFai~~GiA 163 (428)
T PRK01663 111 TLDAKAVAQYAAQAHEQGTVDFLMDI-IPTTVVGAFA----SGDILQVLLFAVLFGFA 163 (428)
T ss_pred cccchhhcccccccccccHHHHHHHH-CCCchHHHHh----cCChHHHHHHHHHHHHH
Confidence 00 00000011111233444444 6766544432 24789999999998764
No 76
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=74.58 E-value=1.1e+02 Score=32.19 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=18.5
Q ss_pred CChhhHHHHhhhcccchhhHHHHHHHHHHHH
Q 047772 182 TDMNLYALVFGESVLNDAMAISLYRTMSLVR 212 (498)
Q Consensus 182 ~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~ 212 (498)
+|++..+-.. =++.+++++|.++.+++
T Consensus 147 iP~N~~~ala----~gn~L~vIiFai~~GiA 173 (437)
T PRK11283 147 IPTNIFASMA----KGEMLPIIFFSVLFGLG 173 (437)
T ss_pred cCCChHHHHh----cCChHHHHHHHHHHHHH
Confidence 6666544322 35789999999998875
No 77
>COG2985 Predicted permease [General function prediction only]
Probab=73.82 E-value=25 Score=36.96 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=58.3
Q ss_pred cccchHHhhhhhhCCCc---hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCc--HHHHHHhccccCCcch
Q 047772 96 SFLDSFRHTQSGFSLSP---KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLP--FVECLMFGALISATDP 170 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~---~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~--~~~all~gailsaTdp 170 (498)
+++|...+|..|++--+ ..+||..++-..++++-+ ++.....+..+ ..+++| .....+=||+-+...-
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alliv-i~~~~~a~~l~------k~~~~~~~~~~Gm~sGAlTsTP~L 134 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV-IAALLLAWVLH------KLFGIDLGLIAGMFSGALTSTPGL 134 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHH------hhcCCCHHHhhhhhcccccCCchh
Confidence 68888888899988764 567788888777776553 33333333332 245554 5567778888888888
Q ss_pred HHHHHHHHhhCCChh
Q 047772 171 VTVLSIFQELGTDMN 185 (498)
Q Consensus 171 v~v~~il~~~~~~~~ 185 (498)
+++..++++.+.|..
T Consensus 135 ~aa~~~L~~lg~~~~ 149 (544)
T COG2985 135 GAAQDILRELGAPSQ 149 (544)
T ss_pred HHHHHHHHhhccchh
Confidence 889999999988755
No 78
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=72.89 E-value=29 Score=34.75 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=32.1
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVT 137 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~ 137 (498)
....|..|+..|..++.++.++.++.+....+.=.++..++.
T Consensus 214 ~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~ 255 (321)
T TIGR00946 214 GATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVM 255 (321)
T ss_pred HHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888777776666555554544444
No 79
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=72.30 E-value=30 Score=37.73 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHHhhhccCcccccccccccChh---hhhhcccccchHHhhhhhhCCCc---hhhHhhHHHHHHHHHH
Q 047772 55 PEASASLLIGLIVGALANISNTETNISAYLLLDFE---FYLQHFSFLDSFRHTQSGFSLSP---KPFFSNFGAIVTFAIF 128 (498)
Q Consensus 55 P~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~L~~ilF~~G~~l~~---~~l~~~~~~i~~la~~ 128 (498)
-...+.+++|+++|.+....+. ...+++. .+- +++|...++..|++--. +.++++..+.+.+++.
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~------~~~~p~~a~~~l~---~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~ 486 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPT------FGNIPSSASWLLK---DLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIV 486 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCc------ceecCHHHHHHHH---HHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 3456778888888864321110 0112221 333 78888888888887664 4556667777777776
Q ss_pred HHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCC-cchHHHHHHHHh
Q 047772 129 GTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISA-TDPVTVLSIFQE 179 (498)
Q Consensus 129 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsa-Tdpv~v~~il~~ 179 (498)
-++++.++..+..+ +.+++++. .+.|++..+ |+|.+.....+.
T Consensus 487 ~~~~~~~~~~~~~~------~~~~~~~~--~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 487 VTILPLIITMLIGK------YVLKYDPA--LLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHHHH------HHhCCCHH--HHHHHhhccCCCcHHHHHHHHh
Confidence 66666665555553 35677654 556665544 666555444443
No 80
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=72.28 E-value=5.6 Score=37.52 Aligned_cols=134 Identities=11% Similarity=0.135 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYY---LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQ 105 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~---iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~ 105 (498)
+....++...+...+.+.+-.+.+. +|...+.+++|.++=.+...... .......+ ... .+.+-++.-.
T Consensus 99 l~~~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~----~~~~iv~s-~l~---t~a~~I~~ik 170 (252)
T KOG3826|consen 99 LFGLIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGA----VCAPIVVS-PLR---TVALTIIKIK 170 (252)
T ss_pred eEeeehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhc----eeeeeeeh-hhh---hccchHHHHH
Confidence 4445566677788888888877322 34478888888554322211100 00001111 223 6788889999
Q ss_pred hhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHH
Q 047772 106 SGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSI 176 (498)
Q Consensus 106 ~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~i 176 (498)
+|++++.|.+++.......+++....+.+-.-....+ +..+.||..+++.|.++.+..+...-+-
T Consensus 171 ~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~------~~l~~~ii~~~l~g~v~~~i~~~~~r~~ 235 (252)
T KOG3826|consen 171 AGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSH------FLLAGPIIWAFLLGIVIGSILWRFPRPD 235 (252)
T ss_pred hhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHH------HHhccchHHHhccccceeeeecCCcccc
Confidence 9999999999999988888887766666555555555 5678999999999999998777655433
No 81
>COG3329 Predicted permease [General function prediction only]
Probab=71.36 E-value=7.3 Score=38.22 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=85.0
Q ss_pred HHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHHH
Q 047772 44 HVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIV 123 (498)
Q Consensus 44 ~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~ 123 (498)
.+++.-- +...+.+++.|+++|.+.+-...+ ..+ .+-. -.+ +-.|++.+..-|++- +|++++.++.-.
T Consensus 209 ell~Esf---lnpal~lllggl~iGlitGe~g~~--vl~--~F~~-~lF---qGvL~lflL~MGm~A-~rrl~elrk~g~ 276 (372)
T COG3329 209 ELLQESF---LNPALVLLLGGLAIGLITGEQGES--VLK--PFFD-PLF---QGVLCLFLLDMGMTA-GRRLKELRKVGQ 276 (372)
T ss_pred HHHHHHH---cCchHHHHHHHHHHhheeccCchh--hhh--hhhH-HHH---HHHHHHHHHHHhHHH-HHHHHHHHhcCc
Confidence 4444443 666788899999999776532211 111 1111 133 567788888888775 344554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHh-hhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhcc-----cc
Q 047772 124 TFAIFGTFLASMVTGILVYLGGVM-FLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESV-----LN 197 (498)
Q Consensus 124 ~la~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~-----ln 197 (498)
.+-+.+.+.+. +-|.+....|+. .+..|++.....+++.+.++.+=+++-+. .+..+|+--.++-.|.|+ +|
T Consensus 277 ~~v~fgllaPi-l~g~ig~~lg~~a~y~tgfs~g~~vllAVlaaSaSyIa~Paa-lR~~iPeAnPs~yl~~Slgvtfpfn 354 (372)
T COG3329 277 GLVLFGLLAPI-LHGFIGLLLGMIAGYPTGFSDGGVVLLAVLAASASYIAVPAA-LRLAIPEANPSLYLGASLGVTFPFN 354 (372)
T ss_pred ceehHHHHHHH-HHHHHHHHHHHHhcccccCCCcchHHHHHHhcchhhccccHH-HhccCCCCCCcceeehhhcccccee
Confidence 44444544432 333333222221 23445555556777766666555555344 466777766666666653 78
Q ss_pred hhhHHHHHHHHH
Q 047772 198 DAMAISLYRTMS 209 (498)
Q Consensus 198 D~~aivl~~~~~ 209 (498)
=.++|++|.-+.
T Consensus 355 i~igIPLyi~~A 366 (372)
T COG3329 355 ITIGIPLYIELA 366 (372)
T ss_pred eeechHHHHHHH
Confidence 888888884433
No 82
>COG0679 Predicted permeases [General function prediction only]
Probab=70.06 E-value=1.2e+02 Score=30.20 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 047772 261 LSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAAN 340 (498)
Q Consensus 261 ~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~~~~~~~v~R~~~ 340 (498)
-++.+-+.+.|+.++..+.+. .+...+..+.++...-++..+.+|+.+......+.....+......-.+.-++.
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~l-----P~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~ 241 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISL-----PAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLV 241 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHH
Confidence 467777888888888554432 124677778888888999999999999764332332223322222233444444
Q ss_pred HHHHHHHHHhhcccCCCCCccc--hhheeccCcchhHHHHHHhh
Q 047772 341 VFSCAYLVNLARPAHRQIPLKH--QQALWYSGLRGAMAFALALQ 382 (498)
Q Consensus 341 v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~rG~valala~~ 382 (498)
.+...++. +++..+ ..++.-+.|.+..+..+|..
T Consensus 242 ~~~~~~~~--------~l~~~~~~v~vl~~a~P~A~~~~v~a~~ 277 (311)
T COG0679 242 ALLVAKLL--------GLSGLALQVLVLLSAMPTAVNAYVLARQ 277 (311)
T ss_pred HHHHHHHc--------CCChHHHHHHHHHhhCcHHhHHHHHHHH
Confidence 55554442 233322 23333366788888888865
No 83
>PRK04972 putative transporter; Provisional
Probab=68.58 E-value=27 Score=38.10 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-C-CcCChHHHHHHHHHHHHHhhhccCcccccccccccCh--h-hhhhcccccchHHh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHK-F-YYLPEASASLLIGLIVGALANISNTETNISAYLLLDF--E-FYLQHFSFLDSFRH 103 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~-~-~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~~L~~il 103 (498)
+..+.+-++++.+++.+--+.+ . ..+-...+.++.|+++|.+-...+.. ..+.+ . .+- +++|...+
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~------~~~p~~a~~~l~---~~GL~lFl 453 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTF------GYIPQGALNMVK---EFGLMVFM 453 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCc------eeeCHHHHHHHH---HHhHHHHH
Confidence 4555556666666665422211 0 01334678899999999644332211 11121 1 333 78887777
Q ss_pred hhhhhCCCc---hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCC-cchHHHHHHHHh
Q 047772 104 TQSGFSLSP---KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISA-TDPVTVLSIFQE 179 (498)
Q Consensus 104 F~~G~~l~~---~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsa-Tdpv~v~~il~~ 179 (498)
...|++--. +.++++..+.+..+...++++.++..++.+ +.+++++. .+.|++..+ |+|.+.....+.
T Consensus 454 a~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~------~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 454 AGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGA------YVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 777776543 455666777777777777777666655554 46777775 566766555 676666555444
Q ss_pred h
Q 047772 180 L 180 (498)
Q Consensus 180 ~ 180 (498)
.
T Consensus 526 ~ 526 (558)
T PRK04972 526 A 526 (558)
T ss_pred c
Confidence 3
No 84
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=66.61 E-value=1.4e+02 Score=29.70 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=63.9
Q ss_pred cchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 047772 261 LSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAAN 340 (498)
Q Consensus 261 ~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~~~~~~~v~R~~~ 340 (498)
.++++-+.++|+.++-.+.+ ++ ....+..+.+.....++--+.+|+.+...... ..+.........-++.-++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-lP----~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~-~~~~~~~~~~~~klil~P~i 254 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-MP----GLILKSISILSGATTPMALFSLGLALSPRKIK-LGVRDAILALIVRFLVQPAV 254 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-Cc----HHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc-cChHHHHHHHHHHHHHHHHH
Confidence 46777777888888754432 21 34677788888888899999999887644321 11222222333333333333
Q ss_pred HHHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhh
Q 047772 341 VFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQ 382 (498)
Q Consensus 341 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~ 382 (498)
++...+.. +-.-..+...++..+.|-+..+..+|..
T Consensus 255 ~~~~~~~~------~l~~~~~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 255 MAGISKLI------GLRGLELSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHh------CCChHHHHHHHHHHcCChhhHHHHHHHH
Confidence 34443332 1111334455566677788888888865
No 85
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=65.64 E-value=3.4 Score=42.36 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhCCCchhh---H
Q 047772 40 FVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPF---F 116 (498)
Q Consensus 40 ~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~l~~~~l---~ 116 (498)
.....+.++.+ .+..++.+++|++++ +... .+...+ ..++ .-. .++.|......|.++|.+.+ .
T Consensus 223 ~~~~~~a~~~g---~s~~l~af~~Gl~~~---~~~~-~~~~~~--~l~~-~~~---~~~~~lfF~~iG~~~~~~~l~~~~ 289 (380)
T PF00999_consen 223 LLLYGLAEILG---LSGILGAFIAGLILS---NSPF-AERLEE--KLES-FWY---GFFIPLFFVFIGMSLDFSSLFNSP 289 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcccccccc---ccccceeeeeehccc---cccc-cchhhh--cccc-hhh---HHHhhHHhhhhcccccccccccch
Confidence 33355566667 788888888888887 1111 111111 1111 222 57778888889999999888 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHH
Q 047772 117 SNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 117 ~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v 173 (498)
+.+.....+.+.....-.+.+.... ...+.++.+++..|....+-..+..
T Consensus 290 ~~~~~~~~~~~~~~~~k~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~l 339 (380)
T PF00999_consen 290 SVIILVLLLLIAILLGKFIGVYLAS-------RLFGIPWKEALFIGLGMLPRGEVSL 339 (380)
T ss_dssp ----------------------------------------HHHHTTTTSS--HHHHH
T ss_pred hhhhhHHHHHHHHHHhhhceeehhh-------hhcccccchhHHHHHhhcCccHHHH
Confidence 4444444444333333333322222 2458999999999988875444433
No 86
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=64.64 E-value=26 Score=34.79 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=35.2
Q ss_pred hhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHH
Q 047772 90 FYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLAS 134 (498)
Q Consensus 90 ~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~ 134 (498)
++.+...+.+|+.-|.-|-.+|++...|..-+-.++++..++++.
T Consensus 194 fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg 238 (314)
T PF03812_consen 194 FLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTG 238 (314)
T ss_pred HHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 333333689999999999999999999999888888766555543
No 87
>PRK03818 putative transporter; Validated
Probab=63.11 E-value=31 Score=37.55 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCC------hHHHHHHHHHHHHHhhhccCcccccccccccC-hhhhhhcccccchHH
Q 047772 30 LLQIMMLVLSFVLGHVLRRHKFYYLP------EASASLLIGLIVGALANISNTETNISAYLLLD-FEFYLQHFSFLDSFR 102 (498)
Q Consensus 30 l~~~~lL~~~~~~~~l~~~~~~~~iP------~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~L~~i 102 (498)
..+.+.++++.+++.+ +++++-+| ...+.++.|+++|.+-...+.... .... +..+- +++|...
T Consensus 372 ~~l~l~I~lg~llG~i--~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~~~~~----~p~~a~~~l~---~~GL~lF 442 (552)
T PRK03818 372 LPVFIGIGLGVLLGSI--PFFIPGFPAALKLGLAGGPLIVALILGRIGSIGKLYWF----MPPSANLALR---ELGIVLF 442 (552)
T ss_pred HHHHHHHHHHHhhcee--eEecCCCccceeeecchHHHHHHHHHHhccCCCCceee----cCHHHHHHHH---HHhHHHH
Confidence 4444455555555544 23322222 256789999999954332110000 0111 12333 6888888
Q ss_pred hhhhhhCCCch---hhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCC-cchHHH
Q 047772 103 HTQSGFSLSPK---PFFS-NFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISA-TDPVTV 173 (498)
Q Consensus 103 lF~~G~~l~~~---~l~~-~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsa-Tdpv~v 173 (498)
+...|++--.. .+++ +....+.++...++++.++..++.+ +.+++++. .+.|++..+ |+|.+.
T Consensus 443 la~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~------~~~~~~~~--~~~G~~aG~~t~tp~l 510 (552)
T PRK03818 443 LAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILAR------MLAKMNYL--TLCGMLAGSMTDPPAL 510 (552)
T ss_pred HHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH------HHHcCCHH--HHHHHHhccCCCcHHH
Confidence 88888776543 3333 3556666666666666555554444 35677764 556666554 555544
No 88
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=62.89 E-value=1.7e+02 Score=29.27 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=24.6
Q ss_pred ChhhhhhcccccchHHhhhhhhCCCchhhHhhHHHH
Q 047772 87 DFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAI 122 (498)
Q Consensus 87 ~~~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i 122 (498)
++|... .+++..+.|..|++++.+++++..+..
T Consensus 28 ~~~~~~---~~~v~~iFf~~Gl~L~~~~l~~~~~~~ 60 (313)
T PF13593_consen 28 KPEYVI---KYGVALIFFISGLSLPTEELKAALRNW 60 (313)
T ss_pred chhhhH---HHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence 334455 677888899999999999998655543
No 89
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=62.20 E-value=63 Score=28.75 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHHhhhccCccccccccccc-ChhhhhhcccccchHHhhhhhhCCCch---hhHhhH-HHHHHHHHH
Q 047772 54 LPEASASLLIGLIVGALANISNTETNISAYLLL-DFEFYLQHFSFLDSFRHTQSGFSLSPK---PFFSNF-GAIVTFAIF 128 (498)
Q Consensus 54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~L~~ilF~~G~~l~~~---~l~~~~-~~i~~la~~ 128 (498)
+-...+.+++|+++|.+-...+.... ... .++.+- +++|...++..|++--.+ .++++. ...+.++..
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~----~p~~~~~~l~---~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~ 93 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWY----IPFSANLFIR---EFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGAL 93 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCccee----cChhHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 33477899999999965321110000 011 122344 789988999888887643 344433 122333333
Q ss_pred HHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCC-cchHHHHHHHHhh
Q 047772 129 GTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISA-TDPVTVLSIFQEL 180 (498)
Q Consensus 129 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsa-Tdpv~v~~il~~~ 180 (498)
.+++..+++.+..+ ..+++++ ....|++..+ |+|.+.-+..+..
T Consensus 94 v~~~~~~~~~~~~~------~~~~~~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 94 ITVVPTLLVAVALI------KLLRINY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHH------HHhCCCH--HHHHHHHhccccChHHHHHHHHHh
Confidence 44444444433333 3567765 3555655444 5555544444433
No 90
>COG0679 Predicted permeases [General function prediction only]
Probab=60.38 E-value=1.9e+02 Score=28.88 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=53.5
Q ss_pred hhhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhHhhhcccCcHH---HHHHhccc
Q 047772 89 EFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIF-GTFLASMVTGILVYLGGVMFLMYRLPFV---ECLMFGAL 164 (498)
Q Consensus 89 ~~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~---~all~gai 164 (498)
+.+. ....|..++..|..++.+..++...+....+.. -.++..+++....+ .++++-. ...+.+
T Consensus 196 ~~l~---~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~-------~~~l~~~~~~v~vl~~-- 263 (311)
T COG0679 196 DLLA---SAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAK-------LLGLSGLALQVLVLLS-- 263 (311)
T ss_pred HHHH---HhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHH-------HcCCChHHHHHHHHHh--
Confidence 3455 789999999999999998787777776666654 35555555555444 3444433 344443
Q ss_pred cCCcchHHHHH--HHHhhCCChhhHHHH
Q 047772 165 ISATDPVTVLS--IFQELGTDMNLYALV 190 (498)
Q Consensus 165 lsaTdpv~v~~--il~~~~~~~~l~~ll 190 (498)
.-|.++.. +-++++.++++....
T Consensus 264 ---a~P~A~~~~v~a~~~~~~~~laa~~ 288 (311)
T COG0679 264 ---AMPTAVNAYVLARQYGGDPRLAAST 288 (311)
T ss_pred ---hCcHHhHHHHHHHHhCCChHHHHHH
Confidence 23333333 336777777654433
No 91
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=60.04 E-value=2e+02 Score=29.24 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q 047772 263 GIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAET-FVFIYMGFD 312 (498)
Q Consensus 263 gilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~F~~iG~~ 312 (498)
+++.+...|.+.++.+. ++++. .+...+..-+++.+ ++|.-++-.
T Consensus 8 ~i~~ii~~G~~~~~~~~--l~~~~---~~~ls~lv~~~~lP~liF~~i~~~ 53 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGI--LDPEA---SKGLSKLVFNVFLPALIFSSIANT 53 (385)
T ss_pred HHHHHHHHHHHHHHhCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567778888886533 33333 33334444444444 446655554
No 92
>PRK10711 hypothetical protein; Provisional
Probab=59.68 E-value=1.6e+02 Score=28.03 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHh--hhhhhCCCch
Q 047772 36 LVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRH--TQSGFSLSPK 113 (498)
Q Consensus 36 L~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~il--F~~G~~l~~~ 113 (498)
+..-.+..++.||.|.+.+++.....+.-+.+=...+.+... ..-..+.+. ..|.|-. |..=+.-+++
T Consensus 13 l~~y~~~~~l~~k~~~~~l~Pll~s~~~ii~~L~~~~i~Y~~------Y~~g~~~l~----~lLgPAtVALAvPLY~q~~ 82 (231)
T PRK10711 13 LIVFFAARKLAARFKFPLLNPLLVAMVVIIPFLLLTGIPYEH------YFKGSEVLN----DLLQPAVVALAFPLYEQLH 82 (231)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHhCCCHHH------HHhccHHHH----hhhhHHHHHHHHHHHHhHH
Confidence 334455566777777666665554443333322233322111 111122222 3333322 2233334678
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCCh
Q 047772 114 PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDM 184 (498)
Q Consensus 114 ~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~ 184 (498)
.+||++++++.--..|.+++......+.+ .++.+-....-+ +-=|.|.|.+. ++-++.|-.+
T Consensus 83 ~lk~~~~~I~~~~~vG~~v~i~s~~~l~~-------~lg~~~~~~~Sl-~pkSVTtPIAm-~is~~iGG~~ 144 (231)
T PRK10711 83 QIRARWKSIISICFIGSVVAMVTGTAVAL-------WMGATPEIAASI-LPKSVTTPIAM-AVGGSIGGIP 144 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCcCHHHHHHH-hhhhhhHHHHH-HHHHHhCCcH
Confidence 99999999988777788776655555544 344443211111 11234666655 6667766444
No 93
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=57.27 E-value=82 Score=29.71 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=40.7
Q ss_pred CchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhh
Q 047772 111 SPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNL 186 (498)
Q Consensus 111 ~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l 186 (498)
+++.+|||+++++.-.+.|.+++.+....+.+ .++.+-....-+ +-=|-|.|.+. ++-++.|-.+.+
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~-------~lgl~~~~~~Sl-~pkSVTtpiAi-~is~~iGG~~sL 135 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLAR-------LLGLSPEIILSL-APKSVTTPIAI-EISEQIGGIPSL 135 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCcCHHHHHHH-HHHHhhHHHHH-HHHHHhCChHHH
Confidence 57899999999998888888887766655555 344443222211 11234555554 666666644433
No 94
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=57.03 E-value=69 Score=33.87 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHhhCCChhhHHHHhhhcccchhhHHHHHHHHH
Q 047772 176 IFQELGTDMNLYALVFGESVLNDAMAISLYRTMS 209 (498)
Q Consensus 176 il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~ 209 (498)
+++++|.++...+.-. .+.++|.+++++|..+.
T Consensus 411 ~~~k~~~DPa~~s~p~-itt~~D~~g~~~~~~~a 443 (449)
T TIGR00400 411 VAKLLKLDPALMSGPL-ITTIADALTLIIYFNIA 443 (449)
T ss_pred HHHHcCCChhhhhhhH-HHHHHHHHHHHHHHHHH
Confidence 4478888887654333 24568888887765544
No 95
>PRK09903 putative transporter YfdV; Provisional
Probab=54.73 E-value=46 Score=33.25 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=18.8
Q ss_pred cccchHHhhhhhhCCCchhhHhh
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSN 118 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~ 118 (498)
....|.-||..|..+..+.++++
T Consensus 205 ~~~~PlaL~~iG~~L~~~~~~~~ 227 (314)
T PRK09903 205 KANSGVAVFAAGLTLAAHKFEFS 227 (314)
T ss_pred HHHHHHHHHHHHHHHhhcccccc
Confidence 78899999999999877766544
No 96
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=54.15 E-value=67 Score=23.52 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhh
Q 047772 30 LLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALAN 72 (498)
Q Consensus 30 l~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~ 72 (498)
.+..++..++..++.-+-|-| +|.+...++.|+++..+.+
T Consensus 18 a~vG~~m~~S~~lS~~LT~Gr---ihGSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 18 AVVGIIMWVSYWLSKKLTRGR---IHGSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHHHHcc
Confidence 344455555555554444445 9999999999999986544
No 97
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=53.70 E-value=94 Score=30.85 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=34.3
Q ss_pred hhhhcccccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHH
Q 047772 90 FYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLAS 134 (498)
Q Consensus 90 ~~~~~~~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~ 134 (498)
++.+...+..|+.-|.-|-.+|++...|-..+-.++++..++++.
T Consensus 194 fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG 238 (314)
T TIGR00793 194 FFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTG 238 (314)
T ss_pred HhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHh
Confidence 333333689999999999999999999988887777765554443
No 98
>COG2985 Predicted permease [General function prediction only]
Probab=51.69 E-value=37 Score=35.78 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-----cCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchH
Q 047772 27 VGILLQIMMLVLSFVLGHVLRRHKFY-----YLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSF 101 (498)
Q Consensus 27 ~~il~~~~lL~~~~~~~~l~~~~~~~-----~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ 101 (498)
+.++-+++.+.++.+++.+ .+.++ ++-...+.++.|+++|.+-...+. ....++.......+++ +
T Consensus 365 ~~lLp~~ig~~LGvllGsI--p~~~pg~~s~~LG~aGGpLivaLiLG~ig~iGpl------~w~mP~~An~~lrelG--l 434 (544)
T COG2985 365 VDLLPFAIGLGLGVLLGSI--PFPLPGPGSFKLGNAGGPLIVALILGFIGAIGPL------TWFMPPGALLALRELG--L 434 (544)
T ss_pred eccHHHHHHHHHHHhheee--EeccCCCceEeecccccHHHHHHHHHHhcccCce------EEEcChhHHHHHHHHH--H
Confidence 3567777777777777765 22211 133567888999999875543211 0112221111111344 3
Q ss_pred HhhhhhhCCCc-----hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCC-cchHHHHH
Q 047772 102 RHTQSGFSLSP-----KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISA-TDPVTVLS 175 (498)
Q Consensus 102 ilF~~G~~l~~-----~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsa-Tdpv~v~~ 175 (498)
-+|.+|..++. +.+-....++..++.+-++++.+.++++.+ +..+++| ..+.|++..+ |||.+. +
T Consensus 435 ~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~------~v~kmn~--~~l~G~laGs~T~ppaL-a 505 (544)
T COG2985 435 ALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGR------YVLKMNW--LLLCGALAGSMTDPPAL-A 505 (544)
T ss_pred HHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHH------HHHhccH--HHHhhHHhcCCCChHHH-H
Confidence 45666666553 233355566777777777777766666665 4566777 5566766655 888765 5
Q ss_pred HHHhh
Q 047772 176 IFQEL 180 (498)
Q Consensus 176 il~~~ 180 (498)
..++.
T Consensus 506 ~and~ 510 (544)
T COG2985 506 FANDA 510 (544)
T ss_pred HHhhc
Confidence 55444
No 99
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.51 E-value=43 Score=27.71 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHHhhh
Q 047772 32 QIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALAN 72 (498)
Q Consensus 32 ~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~~~~ 72 (498)
++.-.+++..++|++.|+ .....+.+++++++|...+
T Consensus 52 fIsGilVGa~iG~llD~~----agTsPwglIv~lllGf~AG 88 (116)
T COG5336 52 FISGILVGAGIGWLLDKF----AGTSPWGLIVFLLLGFGAG 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHH
Confidence 344455667788888876 3333444555555554443
No 100
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=50.93 E-value=3.1e+02 Score=28.65 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=57.1
Q ss_pred hhhhhhcccccchHHhhhh-hh---C-CCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc
Q 047772 88 FEFYLQHFSFLDSFRHTQS-GF---S-LSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG 162 (498)
Q Consensus 88 ~~~~~~~~~~~L~~ilF~~-G~---~-l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g 162 (498)
.+.|.++..+.++|++|.+ .. + -|.+.+.|..++.+.+-...+.+. +++|+.+-. .+.+|.+.... ..
T Consensus 39 g~~Fi~Likmii~PlVf~tlv~gIa~~~~~k~~gr~g~ktl~yf~~tt~~A-~~iGl~~~~----~~~Pg~g~~~~--~~ 111 (415)
T COG1301 39 GDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLA-IAIGLVVAN----VLQPGAGINID--PA 111 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HcCCCCCCCcC--cc
Confidence 4577766666666666654 11 1 346777777777776665544443 344443321 13444221100 00
Q ss_pred cccCCcc-hHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHHH
Q 047772 163 ALISATD-PVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVR 212 (498)
Q Consensus 163 ailsaTd-pv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~ 212 (498)
..-++.. +......+.+. +|+....-. .| ||.+.+++|.++.+.+
T Consensus 112 ~~~~~~~~~~~~~~~l~~i-iP~ni~~a~-a~---g~vLqil~fail~G~a 157 (415)
T COG1301 112 TLDTGAESEVSILDFLLDI-IPTNIFGAL-AE---GNVLQILFFAILFGLA 157 (415)
T ss_pred ccCCcccccchHHHHHHhh-cCCChHhHh-cC---CChHHHHHHHHHHHHH
Confidence 0001111 11134444444 677765522 22 4999999999998875
No 101
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.91 E-value=1.7e+02 Score=35.21 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHhh
Q 047772 262 SGIVSILFTGIVMK 275 (498)
Q Consensus 262 Sgilav~~~Gl~~~ 275 (498)
-|.+|++++.+++.
T Consensus 64 ~GiVGA~LAD~L~~ 77 (1355)
T PRK10263 64 GGMPGAWLADTLFF 77 (1355)
T ss_pred cchHHHHHHHHHHH
Confidence 36666666655443
No 102
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=49.07 E-value=1.4e+02 Score=28.83 Aligned_cols=63 Identities=13% Similarity=0.383 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 047772 249 PYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEK 317 (498)
Q Consensus 249 ~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~ 317 (498)
+...-.+++.++.+.+++-..+|++++.......++ .+..+.++.+.-.++....|+.++.+.
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~------~~~~~~l~~igl~~llF~~Gl~~d~~~ 66 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN------VEGVNHLAEFGVILLMFLIGLELDLER 66 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC------hHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 344456788899999999999999999654332211 124566777777888888999887653
No 103
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=47.66 E-value=2.8e+02 Score=28.56 Aligned_cols=199 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhhC-----CCchhhHhhHHHHHHHHHHHH
Q 047772 56 EASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFS-----LSPKPFFSNFGAIVTFAIFGT 130 (498)
Q Consensus 56 ~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~~-----l~~~~l~~~~~~i~~la~~g~ 130 (498)
.++..++.|+++|.. ...+....+.....+.|.+..+...+|++|.+=.. -|.++.+|-.++.+.+-...+
T Consensus 4 ~ilia~vlGi~~G~~----~~~~~~~~~l~~~G~lfi~ll~~~v~PLVf~sii~gi~~l~~~~~~g~i~~~~i~~~~~~t 79 (390)
T PF00375_consen 4 QILIAIVLGILLGLI----DFSPEAAQWLSFPGDLFIRLLKMLVLPLVFSSIISGIASLGDAKKLGRIGGRTILYFLLTT 79 (390)
T ss_dssp HHHHHHHHHHHHHHH----TTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHT-TTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHH
Q 047772 131 FLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTM 208 (498)
Q Consensus 131 ~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~ 208 (498)
.+...+.....+ .+.++ .............+.....++.+... +|++..+... =++.++++.|+++
T Consensus 80 ~~A~~ig~~~~~-----~~~pg---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Ni~~a~~----~~~~L~ivvfai~ 147 (390)
T PF00375_consen 80 LLAAAIGLLVAL-----LFQPG---ASGVRASSAVSSISSSESPSLLDFLRNLIPSNIFEAFA----NGNILGIVVFAIL 147 (390)
T ss_dssp HHHHHHHHHHHH-----HS-SS----TTS-SSTTSS--------SSHHHHHCTS-SSHHHHHH----SS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhe-----eeCCC---ccccccccccccccccccccchhhhccccCCcHHHhhh----hcccchhhhHHHH
Q ss_pred HHHH-----ccCCcchHHHHHHHHHHHHHHHhc-----------------chhhhHHHHHHHHHHHHHHHHhhccchhHH
Q 047772 209 SLVR-----SHASSGQNFFMVIVRFLETFVGSI-----------------LQNLECCLFVLFPYFSYMLAEGLGLSGIVS 266 (498)
Q Consensus 209 ~~~~-----~~~~~~~~~~~~i~~~l~~~~g~~-----------------~~~~~~~~~l~~~~~~~~lae~~g~Sgila 266 (498)
.+.+ .....-..+...+.......+..+ ..+.+....++.-.++.+++-.++.-.++.
T Consensus 148 ~G~al~~~~~~~~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~p 227 (390)
T PF00375_consen 148 FGVALGRLGEKGKPLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLP 227 (390)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHH
Q 047772 267 ILFT 270 (498)
Q Consensus 267 v~~~ 270 (498)
....
T Consensus 228 l~~~ 231 (390)
T PF00375_consen 228 LILF 231 (390)
T ss_dssp HHHH
T ss_pred HHHh
No 104
>PRK09903 putative transporter YfdV; Provisional
Probab=44.63 E-value=3.3e+02 Score=27.05 Aligned_cols=108 Identities=9% Similarity=0.069 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 047772 262 SGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANV 341 (498)
Q Consensus 262 Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~~~~~~~~~~~v~R~~~v 341 (498)
++.+-+.++|++++-.+. +++ +...+..+.++....++--+.+|+.+.......+ ... ....+.-++.-++.+
T Consensus 173 nP~iia~~~gl~~~l~~i-~lP----~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~-~~~~~~Kli~~P~i~ 245 (314)
T PRK09903 173 EPVVWAPVLATILVLVGV-KIP----AAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEI-AYNTFLKLILMPLAL 245 (314)
T ss_pred chHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHH-HHHHHHHHHHHHHHH
Confidence 466666777777664432 222 3467777788888888889999999854432211 111 122222333334444
Q ss_pred HHHHHHHHhhcccCCCCCccchhheeccCcchhHHHHHHhh
Q 047772 342 FSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQ 382 (498)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~rG~valala~~ 382 (498)
+...+..+ -.-..+...++.-+.|-+..+..+|..
T Consensus 246 ~~~~~~~~------l~~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 246 LLVGMACH------LNSEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHHcC------CCcHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44333321 111233444555667788888888865
No 105
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=43.03 E-value=2.3e+02 Score=24.83 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=30.8
Q ss_pred hhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047772 105 QSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVY 142 (498)
Q Consensus 105 ~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~ 142 (498)
..|.=..++.+++++.+++...+++|+++.+++|....
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~ 114 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQ 114 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555568899999999999999999998888887665
No 106
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=41.96 E-value=4.3e+02 Score=27.67 Aligned_cols=212 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HhcCCCcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhh----hCC-CchhhHhhHHH
Q 047772 47 RRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSG----FSL-SPKPFFSNFGA 121 (498)
Q Consensus 47 ~~~~~~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G----~~l-~~~~l~~~~~~ 121 (498)
||+-......++..+++|+++|..... ...+.+.-.+.|.++.....+|++|.+= .++ |.+++.|-..+
T Consensus 2 ~~~~~~l~~~i~igl~lGi~~G~~~~~------~~~~l~~iG~iFl~lLkm~VvPlVf~sii~gI~~l~~~~~~grig~~ 75 (421)
T PRK13027 2 KKFLRSLFGQVVIALVLGVALGAFFPH------FAESLKPLGDGFIKLIKMLIGPIVFCVVVSGIAGAGDLKKVGRVGLK 75 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhcchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHH-------HHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhc
Q 047772 122 IVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFV-------ECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGES 194 (498)
Q Consensus 122 i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs 194 (498)
.+.+-...+.+..++...+.+ .+-++-... ..-.-+.--.++++......+.+. +|.+..+-+.
T Consensus 76 ~~~~f~~tt~ia~~igl~~~~-----~~~pg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-iP~Nif~ala--- 146 (421)
T PRK13027 76 AVIYFEVMTTIALVIGLVLAY-----LTGPGVGMNIDLRSLDAASLAGYAKNAQSLKGTAGFLLKL-IPTTAVDAFA--- 146 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhCCCCCccccccccchhhhhhhcccccccccHHHHHHHH-CccchHHHhh---
Q ss_pred ccchhhHHHHHHHHHHHH-----ccCCcchHHHHHHHHHHHHHHHhc--chhhhHHHHHHHHHHHHHHHHhhccchhHHH
Q 047772 195 VLNDAMAISLYRTMSLVR-----SHASSGQNFFMVIVRFLETFVGSI--LQNLECCLFVLFPYFSYMLAEGLGLSGIVSI 267 (498)
Q Consensus 195 ~lnD~~aivl~~~~~~~~-----~~~~~~~~~~~~i~~~l~~~~g~~--~~~~~~~~~l~~~~~~~~lae~~g~Sgilav 267 (498)
=+|.+++++|.++.+++ +....-..+++.+...+.-....+ ....-..-.++-....+.......+.-.+.+
T Consensus 147 -~gn~L~vIvFAi~~GiAl~~~~e~~~~l~~~~~~~~~~~~kii~~im~laPigVfaliA~~~~~~g~~~l~~l~~~l~~ 225 (421)
T PRK13027 147 -KGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELSHVLFRIMGFIIKLAPLGVLGAIAFTTGKYGVGSLKQLGMLVAV 225 (421)
T ss_pred -cCChHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 047772 268 LFTGIVM 274 (498)
Q Consensus 268 ~~~Gl~~ 274 (498)
+..+..+
T Consensus 226 ~~~~~~i 232 (421)
T PRK13027 226 FYLTCFV 232 (421)
T ss_pred HHHHHHH
No 107
>COG3329 Predicted permease [General function prediction only]
Probab=40.09 E-value=3.3e+02 Score=27.17 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcc-cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHH
Q 047772 54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHF-SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFL 132 (498)
Q Consensus 54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i 132 (498)
+.+.+..++.|+++...-.- .++ |+.+.+.. .+.|--|=|.+|.+++.+.+-....+ ...++.+
T Consensus 16 ~sP~llFf~~Gmlia~~ksd----------l~i-P~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~----~~~~~aL 80 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSD----------LEI-PEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLP----VALGVAL 80 (372)
T ss_pred ccchHHHHHHHHHHHHHhcc----------ccC-chHHHHHHHHHHHHHHhcccceeeecCCcchhHHH----HHHHHHH
Confidence 56678888889988643211 111 22222111 45666777888888877666554444 4445555
Q ss_pred HHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHH---HHHHHHhhCCChh
Q 047772 133 ASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVT---VLSIFQELGTDMN 185 (498)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~---v~~il~~~~~~~~ 185 (498)
.++++...-+.. ...++.+..++...|+...+++-+. .++.+++.|..-+
T Consensus 81 ~~li~~ia~f~l---~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giaye 133 (372)
T COG3329 81 GFLIVFIAYFLL---RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYE 133 (372)
T ss_pred HHHHHHHHHHHH---HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHH
Confidence 444433322211 1255777778777777766666543 3456677775443
No 108
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=39.70 E-value=92 Score=35.43 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=46.4
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v 173 (498)
.+++|.-.-..|++.|.+.+.+ +........... ...++.+...- +..++|+.+++.+|.+++.---+..
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~-~~K~l~t~~~s------l~~k~p~~~~l~l~~lm~~kgl~el 382 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFG-AVKLLSTLGTS------LYCKLPLRDSLALGLLMSTKGLVEL 382 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHH------HHhcCchhHHHHHHHHHHhhhHHHH
Confidence 6899999999999999999988 333222222222 22222222222 3578999999999999987655544
No 109
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=36.90 E-value=1.2e+02 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=18.8
Q ss_pred cCCcchHHHHHHHHhhCCChhhHH
Q 047772 165 ISATDPVTVLSIFQELGTDMNLYA 188 (498)
Q Consensus 165 lsaTdpv~v~~il~~~~~~~~l~~ 188 (498)
...|+|.-....+++.|+|+++..
T Consensus 111 ~~TT~~~~l~~~l~~l~~P~~~~~ 134 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVPPLLVE 134 (198)
T ss_pred HHcCCHHHHHHHHHHcCCCHHHHH
Confidence 446888888888999999987644
No 110
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=36.41 E-value=3.3e+02 Score=29.46 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHhhcc
Q 047772 245 FVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRY 277 (498)
Q Consensus 245 ~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~ 277 (498)
.+..+.....+++.++....++-+++|++++..
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~ 38 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLA 38 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhc
Confidence 344455556778889999999999999999964
No 111
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=34.76 E-value=1.9e+02 Score=29.76 Aligned_cols=110 Identities=14% Similarity=0.039 Sum_probs=66.8
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLS 175 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~ 175 (498)
..++-..++.-|.+.|.+.+++.+++...+++ |.+....+--...+..+ ....+|...+ ..+.+.+...|.-..+
T Consensus 116 ~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l-G~v~q~~i~pl~~f~~~---~~~~lP~~~~-ag~~Lvtc~~p~g~~~ 190 (371)
T KOG2718|consen 116 PPGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL-GFVPQYLIMPLLGFLLS---KVLLLPAALA-AGLLLVTCVSPGGGGN 190 (371)
T ss_pred ccHHHHHHHHHhcCccHHHHhhHhhCCcceee-hHHHHHHHHHHHHHhhh---hHhhCCcccc-ceeEEEEeccCCcchh
Confidence 45677889999999999999988888776664 33332222222222110 1234444433 6677778888877766
Q ss_pred HHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHHH
Q 047772 176 IFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLV 211 (498)
Q Consensus 176 il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~~ 211 (498)
.+... .++.-..+...++..+-..++++.-.....
T Consensus 191 ~~~~~-~~~g~v~lsilmT~~stv~avi~~pl~s~~ 225 (371)
T KOG2718|consen 191 YLTSK-RLPGDVTLSILMTTISTVLAVILTPLLSIL 225 (371)
T ss_pred hheee-cCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66443 344555666667777777776655444433
No 112
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=33.52 E-value=5.3e+02 Score=26.25 Aligned_cols=208 Identities=12% Similarity=0.184 Sum_probs=103.5
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccc--cCCcchHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGAL--ISATDPVTV 173 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gai--lsaTdpv~v 173 (498)
++++..++--+=+.||++-+.|...+.+-..+.+++...++.+..- ..+|+++.+++++=++ ++-=-=.-+
T Consensus 28 ~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG-------~l~G~~~~~~~~~i~lPIm~GG~GaGa 100 (347)
T TIGR00783 28 YLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVG-------TLFGLGFDHSLMYIVMPIMAGGVGAGI 100 (347)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCHhHhhheeeehhcCCCcccch
Confidence 7888889989999999999999998888777777766554444333 4678888888775211 000000000
Q ss_pred HHH---HH-hhCCC-hhhHHHHhhhcccchhhHHHHHHHHHHHHcc-C-Ccc-hHHHH-----HHHHHHHHHHHhc-chh
Q 047772 174 LSI---FQ-ELGTD-MNLYALVFGESVLNDAMAISLYRTMSLVRSH-A-SSG-QNFFM-----VIVRFLETFVGSI-LQN 239 (498)
Q Consensus 174 ~~i---l~-~~~~~-~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~-~-~~~-~~~~~-----~i~~~l~~~~g~~-~~~ 239 (498)
+|. -+ -.+.+ +.....+.-...+-+.+||+.-..+-.+... + -++ ..+.. ....--..--.-. .++
T Consensus 101 vPLS~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~~ 180 (347)
T TIGR00783 101 VPLSIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVKL 180 (347)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHHH
Confidence 111 11 22322 3355555556666666776665555443211 0 000 00000 0000000000000 000
Q ss_pred hhHHHHHHHHHHHHH-HHHhh-ccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047772 240 LECCLFVLFPYFSYM-LAEGL-GLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFD 312 (498)
Q Consensus 240 ~~~~~~l~~~~~~~~-lae~~-g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~ 312 (498)
.-.-+.+++++.... +.+.+ +.++..-+.+.|.+.+..+. ++++.++..+.+.+.+..-+...+++-+|+.
T Consensus 181 ~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gl--lp~~i~~~a~~~~~F~~~~lt~~ll~giGla 253 (347)
T TIGR00783 181 MGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGL--VPKEIEEGAKMLSQFISKNLTWPLMVGVGVS 253 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 111122222222221 22233 56888889999999886554 3445455555555555555555555555655
No 113
>PRK01658 holin-like protein; Validated
Probab=32.49 E-value=3.1e+02 Score=23.28 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=30.5
Q ss_pred hhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047772 106 SGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVY 142 (498)
Q Consensus 106 ~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~ 142 (498)
.|.=-..+.+++++.+++...+.+|++...++|....
T Consensus 75 VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~ 111 (122)
T PRK01658 75 VGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQ 111 (122)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567899999999999999999998888887665
No 114
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=29.10 E-value=7.1e+02 Score=26.35 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=13.5
Q ss_pred hhheeccCcchhHHHHHHh
Q 047772 363 QQALWYSGLRGAMAFALAL 381 (498)
Q Consensus 363 ~~~~~~~G~rG~valala~ 381 (498)
..+.|..|+-|.+++..|.
T Consensus 146 g~~vWh~GlSgS~pL~~At 164 (453)
T PF02667_consen 146 GFVVWHGGLSGSAPLLVAT 164 (453)
T ss_pred HHHHHhccccchhHHHhcC
Confidence 3445566888888888875
No 115
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.16 E-value=2.1e+02 Score=23.03 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhcCC---CcCChHHHHHHHHHHHHHhhhcc
Q 047772 33 IMMLVLSFVLGHVLRRHKF---YYLPEASASLLIGLIVGALANIS 74 (498)
Q Consensus 33 ~~lL~~~~~~~~l~~~~~~---~~iP~~~~~ll~GiilG~~~~~~ 74 (498)
.++.++..++....||.+. +++| ...+++|+++|.+....
T Consensus 12 t~~~ii~~~lVq~IkkT~~v~~K~iP--lIs~viGilLG~~~~~~ 54 (93)
T PF06946_consen 12 TFLSIITPALVQAIKKTKVVPNKWIP--LISVVIGILLGAAAYPL 54 (93)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchhh--HHHHHHHHHHHHHhhhc
Confidence 3444445556677777542 3566 67788899999766543
No 116
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=27.16 E-value=1.4e+02 Score=30.08 Aligned_cols=38 Identities=8% Similarity=-0.036 Sum_probs=30.2
Q ss_pred cccchHHhhhhhhCCCchhhHhhHHHHHHHHHHHHHHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLA 133 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~~i~~la~~g~~i~ 133 (498)
.+.||+-.|.-|..+++++..+...+-..+++..++++
T Consensus 202 ~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t 239 (326)
T PRK05274 202 PVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVT 239 (326)
T ss_pred EEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhcc
Confidence 57899999999999999999888887777766544444
No 117
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.52 E-value=5.3e+02 Score=26.16 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 047772 262 SGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAME 316 (498)
Q Consensus 262 Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~ 316 (498)
++.+-+.+.|++++-..... +-.....+....+.+....-++-.+.+|..+...
T Consensus 244 nP~~~a~~lgli~~~~~~~~-~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~ 297 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLR-PLFFPSFITDSLSYLGAAAVPLALFVLGASLARG 297 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 66777777777776543321 0000145677888888888889999999988643
No 118
>PRK01821 hypothetical protein; Provisional
Probab=26.24 E-value=4.3e+02 Score=22.86 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhhCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047772 106 SGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVY 142 (498)
Q Consensus 106 ~G~~l~~~~l~~~~~~i~~la~~g~~i~~~~~~~~~~ 142 (498)
.|.=-..+.+++++.++....+++|+++.+++|....
T Consensus 80 VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~ 116 (133)
T PRK01821 80 VGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSH 116 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554557889999999999999999998888887664
No 119
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=25.84 E-value=7.2e+02 Score=25.34 Aligned_cols=143 Identities=25% Similarity=0.245 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCChHHH-HHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhh
Q 047772 29 ILLQIMMLVLSFVLGHVLRRHKFYYLPEASA-SLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSG 107 (498)
Q Consensus 29 il~~~~lL~~~~~~~~l~~~~~~~~iP~~~~-~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G 107 (498)
....+..++++...++++...++| .|...+ .++.|++.+..... .. .|..++ ..+-..+=-..|
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vP-a~~mlG~~l~a~~v~~~~~~~----------l~-~P~~l~---~~~q~ilG~~ig 72 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVP-AAWMLGAPLLAGIVAGLRGLT----------LP-LPRGLF---KAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhcccc----------cc-CChHHH---HHHHHHHHHHHh
Confidence 456677788888999999999832 233444 44555555522111 11 233555 566666777788
Q ss_pred hCCCchh---hHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCCh
Q 047772 108 FSLSPKP---FFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDM 184 (498)
Q Consensus 108 ~~l~~~~---l~~~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~ 184 (498)
.++..+. +++||..+....+ .++....+.+.+.. -.-++|-.+|++=. +|=-..+...+-+|+|.+.
T Consensus 73 ~~~t~s~l~~l~~~w~~~~~v~~-~tl~~s~l~g~ll~------r~~~~~~~Ta~~gs---~PGgas~m~~iA~d~gAd~ 142 (352)
T COG3180 73 ASLTPSVLDTLKSNWPIVLVVLL-LTLLSSILLGWLLK------RFSILPGNTAFLGS---SPGGASAMVSIAQDYGADL 142 (352)
T ss_pred hhcCHHHHHHHHHcccHHHHHHH-HHHHHHHHHHHHHH------HhcCCCcchhhHhc---CCchHHHHHHHHHHhCCCh
Confidence 8888654 4566666555554 33444444444433 12257767776522 1222223334448999988
Q ss_pred hhHHHHhhhccc
Q 047772 185 NLYALVFGESVL 196 (498)
Q Consensus 185 ~l~~ll~gEs~l 196 (498)
+.......--++
T Consensus 143 ~~VAl~Q~lRvl 154 (352)
T COG3180 143 RLVALMQYLRVL 154 (352)
T ss_pred hHHHHHHHHHHH
Confidence 876666554443
No 120
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=25.55 E-value=1.8e+02 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 047772 33 IMMLVLSFVLGHVLRRHK 50 (498)
Q Consensus 33 ~~lL~~~~~~~~l~~~~~ 50 (498)
++++.+.+.+.|++||++
T Consensus 26 ~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 26 IGIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 344455567789999987
No 121
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=24.24 E-value=1.8e+02 Score=26.80 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhHHH----HHHHHHHHHHHHHHH
Q 047772 264 IVSILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLG----FIFFSILFIIVARAA 339 (498)
Q Consensus 264 ilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~~~~~~~~~~----~~~~~~~~~~v~R~~ 339 (498)
+++++++|++.++..+.+.+ ..-+..++.+ -+.-+.+|+.+..++..++... -.+.+-+..+++=.+
T Consensus 1 Il~~li~Gi~lG~~~~~~~~--------~~~~~~~~~L-~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSll 71 (191)
T PF03956_consen 1 ILIALILGILLGYFLRPPFS--------LIDKISTYAL-YLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLL 71 (191)
T ss_pred CeeeHHHHHHHHHHhccccc--------ccccHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35678899999876664311 1112222333 3334567888765432222221 233344444555555
Q ss_pred HHHHHHHHHHhhcccCCCCCccchhhe
Q 047772 340 NVFSCAYLVNLARPAHRQIPLKHQQAL 366 (498)
Q Consensus 340 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (498)
+.+...++. +.+++|...+
T Consensus 72 gg~l~~~ll--------~~~~~~~lav 90 (191)
T PF03956_consen 72 GGLLASLLL--------GLSLKESLAV 90 (191)
T ss_pred HHHHHHHHh--------cCCHHHHHHH
Confidence 555555543 4566666554
No 122
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=23.75 E-value=1.7e+02 Score=28.41 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=17.7
Q ss_pred cCcHHHHHHhccccCCcchHHH
Q 047772 152 RLPFVECLMFGALISATDPVTV 173 (498)
Q Consensus 152 ~~~~~~all~gailsaTdpv~v 173 (498)
.+-+..++.+|++++|+||..-
T Consensus 198 r~~iv~~fViaaviTPpd~~sq 219 (255)
T COG0805 198 RYAIVAAFVIAAIITPPDVLSQ 219 (255)
T ss_pred CeeeehHHHHHHHcCCCchHHH
Confidence 4556789999999999998543
No 123
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=23.27 E-value=2.5e+02 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=16.4
Q ss_pred HHHhhCCChhhHHHHhhhcccchhhHHHHH
Q 047772 176 IFQELGTDMNLYALVFGESVLNDAMAISLY 205 (498)
Q Consensus 176 il~~~~~~~~l~~ll~gEs~lnD~~aivl~ 205 (498)
++++.|.+++....-. .+.+.|.++..++
T Consensus 103 ~~~k~g~DPd~~~~P~-iTtl~Di~g~~~l 131 (135)
T PF01769_consen 103 ILWKIGLDPDNASIPL-ITTLGDILGTLIL 131 (135)
T ss_dssp HHHHTT--GGGS-STT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCchHhHHHH-HHHHHHHHHHHHH
Confidence 3478888877544322 3456888887766
No 124
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=23.20 E-value=1.1e+02 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=14.0
Q ss_pred chhhHhhHHHHHHHHHHHHHHH
Q 047772 112 PKPFFSNFGAIVTFAIFGTFLA 133 (498)
Q Consensus 112 ~~~l~~~~~~i~~la~~g~~i~ 133 (498)
+++|+||...++.+.++..++.
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHH
Confidence 5778888877666665544443
No 125
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.44 E-value=3.7e+02 Score=22.02 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=15.8
Q ss_pred HHHHHHHHHH-HhcCCCcCChHHHHHHHHHHHHH
Q 047772 37 VLSFVLGHVL-RRHKFYYLPEASASLLIGLIVGA 69 (498)
Q Consensus 37 ~~~~~~~~l~-~~~~~~~iP~~~~~ll~GiilG~ 69 (498)
+++..++..+ +++... ..-.+.++++|+++|.
T Consensus 57 l~G~~lG~WLD~~~~t~-~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSP-FSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHH
Confidence 3444444444 444311 1335566677777774
No 126
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=21.41 E-value=1.1e+03 Score=25.71 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhccch----------hHHHHHHHHHhhcccc
Q 047772 243 CLFVLFPYFSYMLAEGLGLSG----------IVSILFTGIVMKRYTF 279 (498)
Q Consensus 243 ~~~l~~~~~~~~lae~~g~Sg----------ilav~~~Gl~~~~~~~ 279 (498)
-+.-.+++..-.+.|.+|.-| ++++|+||+++++..+
T Consensus 352 PlgG~~~l~~M~L~evfGGvG~Gl~~ml~~~il~VFiaGLMVGRTPE 398 (552)
T PF03814_consen 352 PLGGMVPLFNMMLGEVFGGVGSGLYGMLMYVILTVFIAGLMVGRTPE 398 (552)
T ss_pred chhHHHHHHHHHhCCcCCCcchhHHHHHHHHHHHHHHHhHhcCCChH
Confidence 344455555566666666544 6899999999997654
No 127
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.43 E-value=2.6e+02 Score=29.20 Aligned_cols=65 Identities=9% Similarity=0.110 Sum_probs=40.1
Q ss_pred HHHHHHHhhccchhHHHHHHHHHhhccccccCChh-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 047772 251 FSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSEN-----------SQRFVSAFFHLISSLAETFVFIYMGFDIAM 315 (498)
Q Consensus 251 ~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~F~~iG~~l~~ 315 (498)
--|.=.|..+.--++.+.+.+++.+|..+...-++ ..+......+.+.+.+.++||..+|+++..
T Consensus 10 ~~fl~~e~~~gilLl~a~~~Ali~ANSp~~~~Y~~~~~~~~~~~~~~~~l~~sl~~wINDgLMaiFFf~VGLEIKr 85 (423)
T PRK14855 10 QRFVESEAFAGLLLVGTAVAAFIWANSPWREGYFTLQHTHLALSLGGWSLDLSLEHWVNDGLMAVFFLLVGLEIKR 85 (423)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHcCCcHHHHHHHHcCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666777777888877654211000 001112445668899999999999999863
No 128
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.39 E-value=6e+02 Score=26.75 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHHHHH
Q 047772 31 LQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGA 69 (498)
Q Consensus 31 ~~~~lL~~~~~~~~l~~~~~~~~iP~~~~~ll~GiilG~ 69 (498)
+++.+-++++++-.+++|.+ +| ++=|+++|+.+..
T Consensus 303 LFI~LTF~~fflfE~~~~~~---iH-piQY~LVGlAl~l 337 (430)
T PF06123_consen 303 LFIGLTFLAFFLFELLSKLR---IH-PIQYLLVGLALVL 337 (430)
T ss_pred HHHHHHHHHHHHHHHHhcCc---cc-HHHHHHHHHHHHH
Confidence 33444455567777778888 43 3678999998875
Done!