Query 047772
Match_columns 498
No_of_seqs 226 out of 1706
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.5 1.3E-14 4.4E-19 145.9 10.5 267 96-384 65-350 (388)
2 2l0e_A Sodium/hydrogen exchang 98.4 2E-08 6.8E-13 63.2 -0.8 31 154-184 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 98.2 1.5E-07 5.2E-12 56.2 -0.4 26 181-206 1-26 (28)
4 2k3c_A TMIX peptide; membrane 97.6 2.7E-07 9.2E-12 58.3 -7.0 31 248-278 2-32 (33)
5 2kbv_A Sodium/hydrogen exchang 97.1 0.00017 5.8E-09 43.1 1.6 23 361-383 2-24 (28)
6 3zux_A Transporter, ASBTNM; tr 96.7 0.51 1.8E-05 46.3 25.2 25 96-120 46-70 (332)
7 1y4e_A Sodium/hydrogen exchang 96.2 0.00053 1.8E-08 40.5 -0.9 25 86-113 2-26 (27)
8 2nwl_A GLTPH, glutamate sympor 65.2 13 0.00043 37.6 7.3 149 52-212 11-164 (422)
9 2zy9_A Mg2+ transporter MGTE; 34.0 81 0.0028 32.0 7.4 34 176-210 434-467 (473)
10 2l35_A DAP12-NKG2C_TM; immunor 14.6 1.5E+02 0.0052 20.9 3.2 32 241-273 16-47 (63)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.54 E-value=1.3e-14 Score=145.91 Aligned_cols=267 Identities=13% Similarity=0.096 Sum_probs=181.9
Q ss_pred cccchHHhhhhhhCCCchhh----HhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcc
Q 047772 96 SFLDSFRHTQSGFSLSPKPF----FSNFG--AIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATD 169 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l----~~~~~--~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTd 169 (498)
+-++.+.+|..|+|+|.+.+ ++.++ .....++.|+++++++ | ..++.+..++.--+++.++||
T Consensus 65 dglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y------~~~~~~~~~~~~gw~ip~ATd 133 (388)
T 1zcd_A 65 DALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----Y------LAFNYADPITREGWAIPAATD 133 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----H------GGGCCSSTTHHHHTSSSSCCC
T ss_pred hHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----H------HHHhcCChhhhhhhHHHHHHH
Confidence 78889999999999987765 44444 3577777788887654 3 345566666788899999999
Q ss_pred hHHHHHHHHhhC--CChhhHHHHhhhcccchhhHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHhc-----chhhhH
Q 047772 170 PVTVLSIFQELG--TDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSI-----LQNLEC 242 (498)
Q Consensus 170 pv~v~~il~~~~--~~~~l~~ll~gEs~lnD~~aivl~~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~-----~~~~~~ 242 (498)
-+.++.++..++ +|..++..+.+-+++||..++++..++.. ++ .++............-.. .++...
T Consensus 134 IAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~---~~~~~l~~~~~~~~~~~~l~r~~v~~~~~ 207 (388)
T 1zcd_A 134 IAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND---LSMASLGVAAVAIAVLAVLNLCGARRTGV 207 (388)
T ss_dssp HHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC---CCHHHHHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC---ccHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 999999998776 78889999999999999999999888753 21 222221111111111111 222222
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhccccccCChhHHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhcccc-c
Q 047772 243 CLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQRFVSAFFHL-ISSLAETFV-FIYMGFDIAMEKH-S 319 (498)
Q Consensus 243 ~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~-F~~iG~~l~~~~~-~ 319 (498)
.+ .+...+++.++..|.+..+|.|++|+++....+++.++ .++.++..+. ..+++-++| |...|+.++.... .
T Consensus 208 y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~--~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~ 283 (388)
T 1zcd_A 208 YI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSP--AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDG 283 (388)
T ss_dssp HH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCH--HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCT
T ss_pred HH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhh
Confidence 22 22346677789999999999999999998754322222 2334444444 446889999 9999999865321 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCccchhhee-ccCcchhHHHHHHhhhc
Q 047772 320 WSHLGFIFFSILFIIVARAANVFSCAYLVNLAR--PAHRQIPLKHQQALW-YSGLRGAMAFALALQSV 384 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~G~rG~valala~~~~ 384 (498)
... ...+...+.++++|+++++..+++.-+.+ +.+++.+|++..-++ .+|.|+.+++..+....
T Consensus 284 l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf 350 (388)
T 1zcd_A 284 LTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAF 350 (388)
T ss_dssp HHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHS
T ss_pred ccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 111 12223445568999999888888764443 345678888876555 46889999999886643
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.41 E-value=2e-08 Score=63.21 Aligned_cols=31 Identities=42% Similarity=0.742 Sum_probs=28.4
Q ss_pred cHHHHHHhccccCCcchHHHHHHHHhhCCCh
Q 047772 154 PFVECLMFGALISATDPVTVLSIFQELGTDM 184 (498)
Q Consensus 154 ~~~~all~gailsaTdpv~v~~il~~~~~~~ 184 (498)
+|..|+++||++|+|||+++++++|++++|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4667899999999999999999999999886
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=98.20 E-value=1.5e-07 Score=56.19 Aligned_cols=26 Identities=50% Similarity=0.750 Sum_probs=24.0
Q ss_pred CCChhhHHHHhhhcccchhhHHHHHH
Q 047772 181 GTDMNLYALVFGESVLNDAMAISLYR 206 (498)
Q Consensus 181 ~~~~~l~~ll~gEs~lnD~~aivl~~ 206 (498)
++|++++.+++|||++||++++++|.
T Consensus 1 ~V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 1 HINELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CCSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCCceEEEEEEeeeeecccEEEEEEe
Confidence 47899999999999999999999875
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=97.60 E-value=2.7e-07 Score=58.27 Aligned_cols=31 Identities=35% Similarity=0.643 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHhhccc
Q 047772 248 FPYFSYMLAEGLGLSGIVSILFTGIVMKRYT 278 (498)
Q Consensus 248 ~~~~~~~lae~~g~Sgilav~~~Gl~~~~~~ 278 (498)
++|++|.+||.+|+||++|+++||++++++.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999999874
No 5
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=97.11 E-value=0.00017 Score=43.13 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=20.7
Q ss_pred cchhheeccCcchhHHHHHHhhh
Q 047772 361 KHQQALWYSGLRGAMAFALALQS 383 (498)
Q Consensus 361 ~~~~~~~~~G~rG~valala~~~ 383 (498)
++|.+++|+|+||+++++|++..
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l 24 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLL 24 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHH
T ss_pred CceeEEEeecchHHHHHHHHHhc
Confidence 58899999999999999999763
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.72 E-value=0.51 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.0
Q ss_pred cccchHHhhhhhhCCCchhhHhhHH
Q 047772 96 SFLDSFRHTQSGFSLSPKPFFSNFG 120 (498)
Q Consensus 96 ~~~L~~ilF~~G~~l~~~~l~~~~~ 120 (498)
..++..++|..|.+++.+++++..+
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~ 70 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFK 70 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4688899999999999999994433
No 7
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=96.16 E-value=0.00053 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.9
Q ss_pred cChhhhhhcccccchHHhhhhhhCCCch
Q 047772 86 LDFEFYLQHFSFLDSFRHTQSGFSLSPK 113 (498)
Q Consensus 86 ~~~~~~~~~~~~~L~~ilF~~G~~l~~~ 113 (498)
+++++|+ .+.||+|+|++|+.++.|
T Consensus 2 ~~~~~FF---~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFF---LFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSH---HHHSCCSSHHHHTTGGGG
T ss_pred Cccceee---eeccCccEeeccccccCC
Confidence 4677898 999999999999999765
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=65.22 E-value=13 Score=37.57 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=71.3
Q ss_pred CcCChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhh---h-hCCCchhhHhhHHHHHHHHH
Q 047772 52 YYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQS---G-FSLSPKPFFSNFGAIVTFAI 127 (498)
Q Consensus 52 ~~iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~---G-~~l~~~~l~~~~~~i~~la~ 127 (498)
.....++..+++|+++|......+.......+...-.+.|.++.....+|++|.+ | -+++.++..|-.++.+.+-.
T Consensus 11 ~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~ 90 (422)
T 2nwl_A 11 PVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYL 90 (422)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 3456778888888888865432100000011233334677766655666666542 2 23445667777666666666
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhc-cccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHH
Q 047772 128 FGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG-ALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYR 206 (498)
Q Consensus 128 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~g-ailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~ 206 (498)
..+++..++ |+.... .+.++.... +--. ..-..+++......+.+. +|++..+-... +|.+.+++|+
T Consensus 91 ~tt~iA~~i-gl~~~~----~~~pg~g~~--~~~~~~~~~~~~~~~~~~~l~~~-iP~N~~~a~a~----~~~L~vivfa 158 (422)
T 2nwl_A 91 LTSAFAVTL-GIIMAR----LFNPGAGIH--LAVGGQQFQPHQAPPLVHILLDI-VPTNPFGALAN----GQVLPTIFFA 158 (422)
T ss_dssp HHHHHHHHH-HHHHHH----HSCCCCSCC--CCCCCCCC-----CCTHHHHGGG-SCSCHHHHHHT----CCHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHH----HhCCCcccc--ccccccccccccCCcHHHHHHHH-HhhChHHHHhh----hchHHHHHHH
Confidence 666554433 333321 123332210 0000 000001111122344333 56554332211 5689999998
Q ss_pred HHHHHH
Q 047772 207 TMSLVR 212 (498)
Q Consensus 207 ~~~~~~ 212 (498)
++.+++
T Consensus 159 i~~Gia 164 (422)
T 2nwl_A 159 IILGIA 164 (422)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888774
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=33.97 E-value=81 Score=32.02 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=22.9
Q ss_pred HHHhhCCChhhHHHHhhhcccchhhHHHHHHHHHH
Q 047772 176 IFQELGTDMNLYALVFGESVLNDAMAISLYRTMSL 210 (498)
Q Consensus 176 il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~~ 210 (498)
+++++|.++.+.+--+ -+.++|.+++.+|..+..
T Consensus 434 ~~~~~~~DPa~~s~p~-itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 434 LLRRLGVDPALVSNPL-VATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp HHHHHTCCGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccccccch-HHHHHHHHHHHHHHHHHH
Confidence 4489999888654333 245789999877755443
No 10
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=14.57 E-value=1.5e+02 Score=20.91 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 047772 241 ECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIV 273 (498)
Q Consensus 241 ~~~~~l~~~~~~~~lae~~g~Sgilav~~~Gl~ 273 (498)
+.+.++.++.+.|+.|.. +..|+++....+++
T Consensus 16 DIi~TllLal~VY~~A~~-~~a~~lgi~c~~l~ 47 (63)
T 2l35_A 16 DLVLTVLIALAVYFLGRL-GTAEVLGIISIVLV 47 (63)
T ss_dssp HHHHHHHHHHHHHHHCCS-SSCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc-chhhhhhhhhHHHH
Confidence 457788899999999876 77888888877775
Done!