Query 047772
Match_columns 498
No_of_seqs 226 out of 1706
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 04:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047772.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047772hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 80.9 4.2 0.00031 33.5 9.4 141 54-209 11-168 (173)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 79.7 10 0.00074 35.6 13.2 148 54-212 2-153 (405)
3 d2nwwa1 f.49.1.1 (A:12-416) Pr 9.1 2.5E+02 0.018 25.1 6.7 46 158-203 259-306 (405)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 6.1 1.2E+02 0.009 17.1 1.6 15 263-277 20-34 (37)
5 d1q90g_ f.23.26.1 (G:) PetG su 4.4 2.1E+02 0.015 15.3 1.7 11 61-71 5-15 (30)
6 d2iuba2 f.17.3.1 (A:286-349) M 3.1 1.7E+02 0.013 18.6 0.8 16 34-49 48-63 (64)
7 d1q90m_ f.23.25.1 (M:) PetM su 2.6 5E+02 0.036 13.9 2.2 14 58-71 13-26 (34)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 2.5 3.3E+02 0.024 13.9 1.2 16 263-278 4-19 (27)
9 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 2.4 1.8E+02 0.013 18.2 0.1 20 166-185 12-31 (57)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 2.3 7.5E+02 0.054 15.2 5.4 26 23-48 6-31 (57)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=80.91 E-value=4.2 Score=33.53 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhhhh----------------CCCchhhHh
Q 047772 54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGF----------------SLSPKPFFS 117 (498)
Q Consensus 54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~G~----------------~l~~~~l~~ 117 (498)
+|=.+..++.|.+.+.+...... .++..... -.++|.++=.+|= +.+.++.+|
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~--------~l~~~~~L---a~fiPli~~~gGN~G~Qs~ti~iR~La~g~i~~~~~~~ 79 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFES--------VLEAVTAL---AFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRR 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT--------TTTTTTSC---CCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHhcCCchHHHHHHHHHHHHHhcccccchhHHH
Confidence 77778888888887765543321 12222223 3566666554442 566777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHH-HHHhhCCChhhHHHHhhhccc
Q 047772 118 NFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLS-IFQELGTDMNLYALVFGESVL 196 (498)
Q Consensus 118 ~~~~i~~la~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~-il~~~~~~~~l~~ll~gEs~l 196 (498)
..++=+..++..-.+..++.+...++.+. ...+.-...++.+..++++. --+.+| ++|++|.++...+--+ .+.+
T Consensus 80 ~l~kE~~vgll~G~~l~~i~~~~~~~~~~--~~l~~vi~~sl~~~~~ia~~-~G~~lPlll~klg~DPA~aS~P~-itti 155 (173)
T d2yvxa3 80 VFLKEMGVGLLLGLTLSFLLVGKVYWDGH--PLLLPVVGVSLVLIVFFANL-VGAMLPFLLRRLGVDPALVSNPL-VATL 155 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSCCGGGSCSTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCChhhhhhhH-HHHH
Confidence 66555555544333333333333432110 01111122233332222222 222334 4489998887644222 3567
Q ss_pred chhhHHHHHHHHH
Q 047772 197 NDAMAISLYRTMS 209 (498)
Q Consensus 197 nD~~aivl~~~~~ 209 (498)
||.+++..|..+.
T Consensus 156 ~Di~g~~iyf~iA 168 (173)
T d2yvxa3 156 SDVTGLLIYLSVA 168 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876554
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=79.73 E-value=10 Score=35.57 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHHhhhccCcccccccccccChhhhhhcccccchHHhhhh---h-hCCCchhhHhhHHHHHHHHHHH
Q 047772 54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQS---G-FSLSPKPFFSNFGAIVTFAIFG 129 (498)
Q Consensus 54 iP~~~~~ll~GiilG~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ilF~~---G-~~l~~~~l~~~~~~i~~la~~g 129 (498)
+..++..+++|+++|...+.....+....+.+.-.+.|.++..+..+|++|.+ | -+++.++.+|...+.+.+-...
T Consensus 2 ~~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~t 81 (405)
T d2nwwa1 2 LQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLT 81 (405)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHH
Confidence 45677888889999876554332222222334445677766655555555543 1 2344456666666666655555
Q ss_pred HHHHHHHHHHHHHHhhHhhhcccCcHHHHHHhccccCCcchHHHHHHHHhhCCChhhHHHHhhhcccchhhHHHHHHHHH
Q 047772 130 TFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMS 209 (498)
Q Consensus 130 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~all~gailsaTdpv~v~~il~~~~~~~~l~~ll~gEs~lnD~~aivl~~~~~ 209 (498)
+.++..+...+.+ .+.++.+.... .-+.-..+.+.......+.+. +|++..+-.. =||.+++++|.++.
T Consensus 82 t~iA~~igl~~~~-----~~~pg~~~~~~-~~~~~~~~~~~~~~~~~l~~~-iP~Ni~~al~----~~~~l~vi~fail~ 150 (405)
T d2nwwa1 82 SAFAVTLGIIMAR-----LFNPGAGIHLA-VGGQQFQPHQAPPLVHILLDI-VPTNPFGALA----NGQVLPTIFFAIIL 150 (405)
T ss_dssp HHHHHHHHHHHHH-----HSCSCCCCCCC-CCCCCCCCCCCCCHHHHHGGG-SCSCHHHHHH----SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----Hhcccccccch-hhhccccccccchHHHHHHHh-ccCCHHHHhh----cCCccchhhHHHHH
Confidence 5444333322222 12333221100 001111111222222333333 5665543332 25788888888887
Q ss_pred HHH
Q 047772 210 LVR 212 (498)
Q Consensus 210 ~~~ 212 (498)
+++
T Consensus 151 Gia 153 (405)
T d2nwwa1 151 GIA 153 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 3
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.11 E-value=2.5e+02 Score=25.08 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHhccccCCcchHHHHHHHHhhCCChhhHHHHh--hhcccchhhHHH
Q 047772 158 CLMFGALISATDPVTVLSIFQELGTDMNLYALVF--GESVLNDAMAIS 203 (498)
Q Consensus 158 all~gailsaTdpv~v~~il~~~~~~~~l~~ll~--gEs~lnD~~aiv 203 (498)
...+++.-|+..-...+...||+|+|++..+.+. |.+.=.|+.++.
T Consensus 259 ~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~ 306 (405)
T d2nwwa1 259 LTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALY 306 (405)
T ss_dssp HHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHH
T ss_pred heeeeccccccccHHHHHHHHHcCCCccccceecccchheecccchhH
Confidence 4455555554444445566789999999877664 888888998864
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.13 E-value=1.2e+02 Score=17.11 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHhhcc
Q 047772 263 GIVSILFTGIVMKRY 277 (498)
Q Consensus 263 gilav~~~Gl~~~~~ 277 (498)
|++-+|+.|+.+++|
T Consensus 20 GlLlifvl~vLFssY 34 (37)
T d2axtl1 20 GLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555556555543
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.44 E-value=2.1e+02 Score=15.33 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=6.7
Q ss_pred HHHHHHHHHhh
Q 047772 61 LLIGLIVGALA 71 (498)
Q Consensus 61 ll~GiilG~~~ 71 (498)
++.|+++|.++
T Consensus 5 ll~GivlGlip 15 (30)
T d1q90g_ 5 LLCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHhhHH
Confidence 45677777543
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.15 E-value=1.7e+02 Score=18.63 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 047772 34 MMLVLSFVLGHVLRRH 49 (498)
Q Consensus 34 ~lL~~~~~~~~l~~~~ 49 (498)
+.++++.+...++||+
T Consensus 48 ~~~~~~~~~~~~f~rk 63 (64)
T d2iuba2 48 VMGVIAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3334444444455544
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.64 E-value=5e+02 Score=13.91 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhh
Q 047772 58 SASLLIGLIVGALA 71 (498)
Q Consensus 58 ~~~ll~GiilG~~~ 71 (498)
++.-++|+.+|+.+
T Consensus 13 ig~tl~glaigfvl 26 (34)
T d1q90m_ 13 VGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55667788888643
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.45 E-value=3.3e+02 Score=13.91 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHhhccc
Q 047772 263 GIVSILFTGIVMKRYT 278 (498)
Q Consensus 263 gilav~~~Gl~~~~~~ 278 (498)
|++-+..+|++.+.|.
T Consensus 4 gli~~tl~glf~aayq 19 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHH
Confidence 3444556677766544
No 9
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.36 E-value=1.8e+02 Score=18.16 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=16.1
Q ss_pred CCcchHHHHHHHHhhCCChh
Q 047772 166 SATDPVTVLSIFQELGTDMN 185 (498)
Q Consensus 166 saTdpv~v~~il~~~~~~~~ 185 (498)
.+++|+-+..+.++-.+|++
T Consensus 12 dagspvk~~ql~k~cqVpkk 31 (57)
T d1j75a_ 12 DDGGPVKIGQLVKKCQVPKK 31 (57)
T ss_dssp HHCSCEEHHHHHHHHCSCHH
T ss_pred hcCCchHHHHHHHHHCCCHH
Confidence 46788888888888888876
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.29 E-value=7.5e+02 Score=15.17 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 047772 23 QAAGVGILLQIMMLVLSFVLGHVLRR 48 (498)
Q Consensus 23 ~~~~~~il~~~~lL~~~~~~~~l~~~ 48 (498)
+.....++++.++++++-.+-++.++
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555666667665
Done!