RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047772
(498 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 221 bits (566), Expect = 7e-66
Identities = 128/400 (32%), Positives = 207/400 (51%), Gaps = 41/400 (10%)
Query: 54 LPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYLQHFSFLDSFRHTQSGFSLSPK 113
+PE+ ++ GL+VG + S + F YL LD+ G+ + +
Sbjct: 35 VPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFF-LYLLPPIVLDA------GYFMPQR 87
Query: 114 PFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLM--YRLPFVECLMFGALISATDPV 171
FF N G+I+ FA+ GT + + V G+ +Y ++ + ++ L+FG+LISA DPV
Sbjct: 88 NFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147
Query: 172 TVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRT--------------MSLVRSHAS- 216
VL++F+E + LY ++FGES+LNDA+ + LY T + + AS
Sbjct: 148 AVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASF 207
Query: 217 ----SGQNFFMVIVRFLETFV---GSILQNLECCLFVLFPYFSYMLAEGLGLSGIVSILF 269
G V+ FL F+ ++ +E L Y SY+ AE L LSGI++++F
Sbjct: 208 FVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFAETLHLSGILALIF 267
Query: 270 TGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGFIFFS 329
GI MK+Y +N+S SQ + F ++SSL+ET +FI++G + E H W+ F+ +
Sbjct: 268 CGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWA-FVVAT 326
Query: 330 ILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGLRGAMAFALALQSVHDLPE 389
+ F ++ R V + +++ N RP +IP K Q ++Y+GLRGA+AFALAL L E
Sbjct: 327 LSFCVIYRVLGVRTLSWITNEFRPV--EIPYKDQLVIFYAGLRGAVAFALALL----LDE 380
Query: 390 GHGQ---TIFSATTVIVVLTVLLIGGSTGTMLEALQVVGD 426
+ T V+V TV+ GG+ ++E L+V
Sbjct: 381 KIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKG 420
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 151 bits (384), Expect = 8e-41
Identities = 100/431 (23%), Positives = 192/431 (44%), Gaps = 47/431 (10%)
Query: 24 AAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAY 83
+ +L+ ++ L++S + G +L LPE LL+GL+ G IS
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLL-------LPEIPLLLLLGLLGGPPGLN-----LISPD 54
Query: 84 LLLDFEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYL 143
L LD E +L F + F G L + + +I+ A+ + ++ G+L +
Sbjct: 55 LELDPELFLVLFLAILLFA---GGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHW 111
Query: 144 GGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAIS 203
L+ +P + GA++S TDPV V IF+ + + ++ GES+LND + I
Sbjct: 112 -----LLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIV 166
Query: 204 LYRTMSLVRSHASSGQNFFMVIVRFLETFVGSIL-----------------------QNL 240
L++ + + ++ FL +G IL L
Sbjct: 167 LFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLL 225
Query: 241 ECCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKRYTFSNLSENSQR-FVSAFFHLISS 299
E L +L + +Y+LAE LG+SGI++++ G+V+ NLS S R +S+F+ ++
Sbjct: 226 ETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDF 285
Query: 300 LAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIP 359
L +F+ +G + + L + +++ +++AR VF L +P
Sbjct: 286 LLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVF--LSLKGSNLKLRDPLP 343
Query: 360 LKHQQALWYSGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLE 419
+ + L ++G RG ++ ALAL +LP + I ++++ ++L+ G + + +
Sbjct: 344 WRERLFLSWAGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAK 403
Query: 420 ALQVVGDAHDG 430
L+V ++
Sbjct: 404 KLEVSEESALA 414
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 123 bits (310), Expect = 5e-31
Identities = 105/402 (26%), Positives = 176/402 (43%), Gaps = 64/402 (15%)
Query: 33 IMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYL 92
+++L+L+ + G + RR LP +L G+++G L E L
Sbjct: 2 VLLLLLALLAGLLARR---LGLPPVVGLILAGILLGPSGLGLVEPDLDLEVL---AELGL 55
Query: 93 QHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYR 152
FL +G L + N +I+ A+ G + ++ +L LGG
Sbjct: 56 PLLLFL-------AGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGG-----LG 103
Query: 153 LPFVECLMFGALISATDPVTVLSIFQELG-TDMNLYALVFGESVLNDAMAISLYRTMSLV 211
+P +E L+FGA +SAT PV VL+I +E G + L L+ GESVLNDA+A+ L + +
Sbjct: 104 IPLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLAL 163
Query: 212 RSHASSGQNFFMVIVRFLETFVGSIL-------------------QNLECCLFVLFPYFS 252
+ + ++++ FL +G +L + LE L + +
Sbjct: 164 -AGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALALLA 222
Query: 253 YMLAEGLGLSGIVSILFTGIVMKRYTFSN-LSENSQRFVSAFFHLISSLAETFVFIYMGF 311
+LAE LGLSGI+ G+V+ Y F+N LSE + F F F+ +G
Sbjct: 223 ALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLF-------LPLFFVSVGL 275
Query: 312 DIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQQALWYSGL 371
+ + S L + ++ I++ + VF A L+ + L+ + + GL
Sbjct: 276 SLDLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLLG--------LSLREALIVGFGGL 327
Query: 372 -RGAMAFALA---LQSVHDLPEGHGQTIFSATTVIVVLTVLL 409
RGA++ ALA LQ E +++ +V+LT LL
Sbjct: 328 QRGAVSLALAAIGLQLGLIDRE-----LYTLLVAVVLLTTLL 364
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 94.2 bits (234), Expect = 1e-20
Identities = 98/434 (22%), Positives = 169/434 (38%), Gaps = 70/434 (16%)
Query: 33 IMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLDFEFYL 92
I+ LV+ V KF LP A +L GL++G + + L L +L
Sbjct: 3 IIELVMLATAVAV--TVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFL----FL 56
Query: 93 QHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVY--LGGVMFLM 150
F + + NF I A + ++V G + LG
Sbjct: 57 PPLLFEA-------AMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILG------ 103
Query: 151 YRLPFVECLMFGALISATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSL 210
+P L+ GA++S TD V VL F+ + L L+ GES+LND A+ ++ +++
Sbjct: 104 --IPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFA-IAV 160
Query: 211 VRSHASSGQNFFMVIVRFLETFVGSILQNL-------------------ECCLFVLFPYF 251
+ + + F VG I L E L +L P+
Sbjct: 161 AVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFA 220
Query: 252 SYMLAEGLGLSGIVSILFTGIVMKRY--TFSNLSENSQRFVSAFFHLISSLAETFVFIYM 309
++LAE SG+++++ G+++ Y FS +S ++ F+ +I L +FI +
Sbjct: 221 GFLLAERFHFSGVIAVVAAGLILTNYGRDFS-MSPTTRLIALDFWSVIVFLVNGIIFILI 279
Query: 310 GFDIAME-KHSWSHLGFIFFSILFIIVARAANVFSCA-------YLVNLARPAHRQI--P 359
G +W I + +I+A N F +L + ++R +
Sbjct: 280 GVQTPGTIFSAW---KEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKK 336
Query: 360 LKHQQALW-----YSGLRGAMAFALALQSVHDLPEG-----HGQTIFSATTVIVVLTVLL 409
W ++GLRGA+ ALAL + L G + +F A VI+ ++L+
Sbjct: 337 PMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILF-SLLV 395
Query: 410 IGGSTGTMLEALQV 423
G S ++ V
Sbjct: 396 QGISLPIFVKRKFV 409
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 65.1 bits (159), Expect = 3e-11
Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 53/334 (15%)
Query: 106 SGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALI 165
GF F G ++ A G + S +TG+ + L ++E L+ GA++
Sbjct: 75 GGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAY------LLNLDWLEGLLIGAIV 128
Query: 166 SATDPVTVLSIFQELGTDMNLYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNF-FMV 224
+TD V S+ + + + + ES ND MA+ L T++L+ A N +
Sbjct: 129 GSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFL--TITLIELIAGGETNLSWGF 186
Query: 225 IVRFLETF-----VGSILQNLECCLFV-------LFPYF-------SYMLAEGLGLSGIV 265
++ FL+ F +G L L L+P + L +G SGI+
Sbjct: 187 LLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLLIFSLTGAIGGSGIL 246
Query: 266 SILFTGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLGF 325
++ G+++ N ++ + FF ++ LA+ +F+ +G + + +
Sbjct: 247 AVYLAGLLL-----GNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPA 301
Query: 326 IFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLK-HQQALWY---SGLRGAMAFALA- 380
I S+ I VAR VF IP + +++ + GLRGA+ LA
Sbjct: 302 ILLSLWMIFVARPLAVFLGL------------IPFRFNRREKLFVSWVGLRGAVPIILAI 349
Query: 381 LQSVHDLPEGHGQTIFSATTVIVVLTVLLIGGST 414
+ L + + F+ VVL LLI GST
Sbjct: 350 FPMMAGLE--NARLFFNV-AFFVVLVSLLIQGST 380
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 42.9 bits (102), Expect = 3e-04
Identities = 74/343 (21%), Positives = 144/343 (41%), Gaps = 77/343 (22%)
Query: 123 VTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGT 182
++ A G + + +TG+ + +L+ L ++E L+ GA++ +TD V S+ + G
Sbjct: 91 LSLATLGVLITAGLTGLFAH-----WLL-GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGL 144
Query: 183 DMN--LYALVFGESVLNDAMAISLYRTMSLVRSHASSGQNFFMVIVRFLETFVGS----- 235
++ + + + ES ND MA+ L T+ + + +G ++ +++ + +G+
Sbjct: 145 NLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLL 204
Query: 236 -------ILQNLECCLFVLFPYF-------SYMLAEGLGLSGIVSILFTGIVMK----RY 277
+L + L+P + L LG SG +++ G+V+ R+
Sbjct: 205 GGWLLVQLLNRIALPAEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRH 264
Query: 278 TFSNLSENSQRFVSAFFHLISSLAETFVFIYMG--------FDIAMEKHSWSHLGFIFFS 329
S L FF ++ LA+ +F+ +G DIA+ + +
Sbjct: 265 RHSILR---------FFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPA--------LLLA 307
Query: 330 ILFIIVARAANVFSCAYLVNLARPAHRQIPLK---HQQAL--WYSGLRGAMAFALA-LQS 383
+ I+VAR VF +P + ++ W GLRGA+ LA
Sbjct: 308 LFLILVARPLAVFLSL------------LPFRFNLREKLFISW-VGLRGAVPIVLATFPM 354
Query: 384 VHDLPEGHGQTIFSATTVIVVLTVLLIGGSTGTMLEALQVVGD 426
+ LP + Q IF+ +V++++LL G + L VV
Sbjct: 355 MAGLP--NAQLIFNVVFFVVLVSLLLQGTTLPWAARKLGVVVP 395
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 36.8 bits (86), Expect = 0.023
Identities = 77/408 (18%), Positives = 143/408 (35%), Gaps = 64/408 (15%)
Query: 29 ILLQI-MMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVGALANISNTETNISAYLLLD 87
ILLQ+ ++L+++ +LG + +R LP LL G+I+G + E++ LL +
Sbjct: 7 ILLQLLILLLVAVILGPLFKRLG---LPPVLGYLLAGIILGPWGLLLIIESSEIIELLAE 63
Query: 88 FEFYLQHFSFLDSFRHTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVM 147
FL G + ++ A + G+L+ LG +
Sbjct: 64 LGVVF--LLFL-------IGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILG 114
Query: 148 FLMYRLPFVECLMFGALISATDPVTVLSIFQELG-TDMNLYALVFGESVLNDAMAISLYR 206
+ L GA ++ + VL I ELG L+ G V +D AI L
Sbjct: 115 L-----SLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLA 169
Query: 207 TMSLVRSHASSGQN-----------FFMVIVRFLETFVGSILQNLE----------CCLF 245
+ + S F +++ + + + + L
Sbjct: 170 IVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLL 229
Query: 246 VLFPYFSYMLAEGLGLSGIVSILFTGIVMKR--YTFSNLSENSQRFVSAFFHLISSLAET 303
++ + LAE LGLS I+ G+++ Y L E + F F +
Sbjct: 230 LVL--GAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLF-----IPLF 282
Query: 304 FVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVARAANVFSCAYLVNLARPAHRQIPLKHQ 363
F+ + M D+ +L I + I+ + + A R + +
Sbjct: 283 FISVGMSLDL---GVLLENLLLILLLVALAILGKILGAY----------LAARLLGFSKR 329
Query: 364 QALWY-SGLRGAMAFALALQSVHDLPEGHGQTIFSATTVIVVLTVLLI 410
AL LR FA L + L + + +A ++ ++T ++
Sbjct: 330 LALGIGLLLRQGGEFAFVLAGIA-LGSAISEALLTAVVILSMITTPIL 376
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 34.1 bits (78), Expect = 0.18
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 135 MVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIFQELGT-----DMNLYAL 189
M +G LV V L+ L F L+ GA I+ATDPV S+ GT +L L
Sbjct: 110 MTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVS--GTFAQKVPGHLRNL 167
Query: 190 VFGESVLNDAMAIS-LYRTMSLVRSHASSGQ--NFFMVIVRFLETFVGSIL 237
+ ES ND +A ++ +M L+ G+ ++ + E GSIL
Sbjct: 168 LSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSIL 218
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 31.9 bits (73), Expect = 0.81
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 104 TQSGFS---LSPKPFFSNFGAIVTFAIFGTFLASMV 136
T GF SP P SNFG + I + LAS+V
Sbjct: 677 TAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLV 712
>gnl|CDD|237114 PRK12488, PRK12488, acetate permease; Provisional.
Length = 549
Score = 29.4 bits (66), Expect = 4.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 132 LASMVTGILVYLGGVMFLMYRLPFVECLMFGALISATDPVTVLSIF 177
+A++ G+L + G+MF + F+ L+ S PV LS+F
Sbjct: 407 IATLGIGLLAVVLGLMFESQNIAFLSGLVLAIAASVNFPVLFLSMF 452
>gnl|CDD|218835 pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This
family consists of several bacterial ABC transporter
proteins which are homologous to the EcsB protein of
Bacillus subtilis. EcsB is thought to encode a
hydrophobic protein with six membrane-spanning helices
in a pattern found in other hydrophobic components of
ABC transporters.
Length = 385
Score = 29.1 bits (66), Expect = 4.9
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 244 LFVLFPYFSYMLAEGLGLSGIVSILFTGIVMK----RYTFSNLSENSQRFVSAFFHLISS 299
+L P + GL + V +L +++K + L + LI +
Sbjct: 116 AILLLPL--LLKILGLSILQYVLLLLFLLLLKAWNLLLKWRILYLVEGKRWDLLIRLILN 173
Query: 300 LAETFVFIYMGFDIAMEKHSWSHLGFIFFSILFIIVAR 337
+ +Y+ F +A + + F+ ++ +++ R
Sbjct: 174 ----LLLLYLLFLLAP---LLAAILFLILLVVLLLLLR 204
>gnl|CDD|205867 pfam13691, Lactamase_B_4, Family description. This is family of
tRNase Z enzymes, that are closely related structurally
to the Lactamase_B family members. tRNase Z is the
endonuclease that is involved in tRNA 3'-end maturation
through removal of the 3'-trailer sequences from tRNA
precursors. The fission yeast Schizosaccharomyces pombe
contains two candidate tRNase Zs encoded by two
essential genes. The first is targeted to the nucleus
and has an SV40 nuclear localisation signal at its
N-terminus, consisting of four consecutive arginine and
lysine residues between residues 208 and 211 (KKRK) that
is critical for the NLS function. The second is targeted
to the mitochondria, with an N-terminal mitochondrial
targeting signal within the first 38 residues.
Length = 63
Score = 26.8 bits (60), Expect = 5.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 275 KRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEKHSWSHLG 324
KRY F N+ E +QR ++ +S L + F+ K SWS++G
Sbjct: 22 KRYLFGNVGEGTQRALNERKVRLSKLEDIFL---------TGKVSWSNIG 62
>gnl|CDD|214436 MTH00151, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 565
Score = 29.4 bits (67), Expect = 5.5
Identities = 42/238 (17%), Positives = 77/238 (32%), Gaps = 48/238 (20%)
Query: 106 SGFSLSPKPFFSNF---GAIVTFAIFGTFLASMVTGILVYLGGVMFLMYRLPFVECLMFG 162
S SL PF S F I+ ++ S++ +L+++G + +Y CL++G
Sbjct: 342 SSLSLCGAPFLSGFYSKDLILESSLMSP--TSLLMVLLMFVGVGLTALYSARLSFCLVWG 399
Query: 163 ALISATD------------PVTVLSI--------FQELGTDMNLYALVFGESVLNDAMAI 202
++ S++ P+ +LS+ Q L + + + I
Sbjct: 400 SMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYL----KLLI 455
Query: 203 SLYRTMSLVRSHASSGQNFFMVIVRFLETFVGSILQNLECCLFVLFPYFSYMLAEGLGLS 262
+ L S F + L F S ++ L P S L
Sbjct: 456 GFVILLGLFLSFGFWDSGFSSSKMVKLSFFFSS--------MWFLSPLSSQPLKSLSLKL 507
Query: 263 GIVSILF-----------TGIVMKRYTFSNLSENSQRFVSAFFHLISSLAETFVFIYM 309
S+ G+ +FS L+E+ FF + L F+ +
Sbjct: 508 SNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGLILLLVLFLVVIS 565
>gnl|CDD|220963 pfam11067, DUF2868, Protein of unknown function (DUF2868). Some
members in this family of proteins with unknown function
are annotated as putative membrane proteins. However,
this cannot be confirmed.
Length = 318
Score = 28.5 bits (64), Expect = 8.0
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 16/118 (13%)
Query: 329 SILFIIVARAANVFSCAYLVNLA-RPAHRQIPLKHQ--------QALWYSGLRGAMAFAL 379
+ + A+ A A L A Q+ + Q LW + L GA+ L
Sbjct: 1 RLWLWLSAKLARDARAALLAPALRAWAGLQLRGRLQRWLLGRLSHLLWLAFLLGALLTLL 60
Query: 380 ALQSVHDLPEGHGQTIFSATTVIVVLTVL-----LIGGS--TGTMLEALQVVGDAHDG 430
L D G T+ SA + L L+G + + A + A
Sbjct: 61 LLLLTRDYAFGWETTLLSADAFHTLTQALAWPPSLLGFAVPDAEQIAASRFGRSAVGD 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.409
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,038,612
Number of extensions: 2660745
Number of successful extensions: 4686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4577
Number of HSP's successfully gapped: 260
Length of query: 498
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 397
Effective length of database: 6,457,848
Effective search space: 2563765656
Effective search space used: 2563765656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)