Query 047775
Match_columns 386
No_of_seqs 270 out of 2282
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 04:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 6.3E-08 2.2E-12 78.7 6.8 70 309-378 35-105 (137)
2 3b5d_A Multidrug transporter E 98.4 1.6E-06 5.5E-11 67.9 9.2 70 309-378 35-105 (110)
3 3b5d_A Multidrug transporter E 98.2 1.8E-06 6.3E-11 67.5 5.5 68 145-212 37-105 (110)
4 2i68_A Protein EMRE; transmemb 98.1 1.3E-06 4.4E-11 71.0 3.2 68 145-212 37-105 (137)
5 2l2t_A Receptor tyrosine-prote 29.7 36 0.0012 21.1 2.3 19 366-384 25-43 (44)
6 2ks1_B Epidermal growth factor 23.9 51 0.0017 20.4 2.3 12 367-378 27-38 (44)
7 2jp3_A FXYD domain-containing 11.7 1.8E+02 0.006 19.7 2.7 18 361-378 23-40 (67)
8 2knc_A Integrin alpha-IIB; tra 10.8 82 0.0028 20.4 0.9 33 36-68 11-43 (54)
9 2zxe_G FXYD10, phospholemman-l 9.4 2.1E+02 0.0072 19.7 2.5 17 361-377 25-41 (74)
10 2l8s_A Integrin alpha-1; trans 9.3 1.1E+02 0.0039 19.7 1.1 24 45-68 17-40 (54)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.61 E-value=6.3e-08 Score=78.74 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-hhhhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhccc
Q 047775 309 NGFVGSVLSDYFWALCVVWTTPLVATLG-MSLTIPLAMVADMVIHGRHYSAIYILGSAQVFAGFVIVNVSD 378 (386)
Q Consensus 309 ~~i~~s~l~~~l~~~~~~~~~~~~~s~~-~~l~~p~a~i~~~i~~ge~~~~~~~~G~~lIi~g~~l~~~~~ 378 (386)
.+++++++++++|.+++++.++..+... ..+.+.++++++++++||++++.+++|.++|++|++++++.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5566789999999999999999999888 788844499999999999999999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.38 E-value=1.6e-06 Score=67.86 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-hhhhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhccc
Q 047775 309 NGFVGSVLSDYFWALCVVWTTPLVATLG-MSLTIPLAMVADMVIHGRHYSAIYILGSAQVFAGFVIVNVSD 378 (386)
Q Consensus 309 ~~i~~s~l~~~l~~~~~~~~~~~~~s~~-~~l~~p~a~i~~~i~~ge~~~~~~~~G~~lIi~g~~l~~~~~ 378 (386)
.++++..+++.++.+++++.+...+... ..+.+.++++++++++||+++..+++|.++|+.|+++.+..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4455688999999999999999988777 678833499999999999999999999999999999998765
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.18 E-value=1.8e-06 Score=67.53 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHh-hcccHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 047775 145 APIWFVTEYFSNAALARTSVASTTVL-SSTSGLFTLFIGAFMGQDTLNVAKVVAVLVSMAGVAMTTLGK 212 (386)
Q Consensus 145 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lls~~~~~ek~~~~~~~~v~l~~~Gv~lv~~~~ 212 (386)
...+..+.+++..++++.+.+.+..+ .++.|+++.++++++++|++++.|++|+.+.++|++++...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33556677889999999999999988 799999999999999999999999999999999999886543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=1.3e-06 Score=70.98 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHh-hcccHHHHHHHHHHhccccchHHHHHHHHHhhhceEEEEecC
Q 047775 145 APIWFVTEYFSNAALARTSVASTTVL-SSTSGLFTLFIGAFMGQDTLNVAKVVAVLVSMAGVAMTTLGK 212 (386)
Q Consensus 145 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lls~~~~~ek~~~~~~~~v~l~~~Gv~lv~~~~ 212 (386)
.+.+.++.++++.++++.+++.+..+ .++.|+++.++++++++|++++.+++|+++.++|++++...+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33556778899999999999999998 899999999999999999999999999999999999987543
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.70 E-value=36 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=8.1
Q ss_pred HHHHHHHHHhccchhhhcc
Q 047775 366 QVFAGFVIVNVSDRLSKKL 384 (386)
Q Consensus 366 lIi~g~~l~~~~~~~~~~~ 384 (386)
++..+..++.+.++.++|+
T Consensus 25 ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHhhhhhhhhcc
Confidence 3444444444444444443
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.90 E-value=51 Score=20.41 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=4.5
Q ss_pred HHHHHHHHhccc
Q 047775 367 VFAGFVIVNVSD 378 (386)
Q Consensus 367 Ii~g~~l~~~~~ 378 (386)
+..++.++.+.+
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333333333333
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.68 E-value=1.8e+02 Score=19.69 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhccc
Q 047775 361 ILGSAQVFAGFVIVNVSD 378 (386)
Q Consensus 361 ~~G~~lIi~g~~l~~~~~ 378 (386)
++++++.++|++++..++
T Consensus 23 ifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 445566677766665443
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.82 E-value=82 Score=20.42 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=15.4
Q ss_pred cEEeeeecchhHHHHHHHHHHHHHHHHHhhhcc
Q 047775 36 PFAVTYLGASLMVVYLPVAFLKDWFCNLLKRRS 68 (386)
Q Consensus 36 P~~~~~~~~~~~~i~lp~~~~~~~~~~~~~~~~ 68 (386)
|+-+.........+++.+.....|.+..+||++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 433333333444444443333346667776553
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=9.42 E-value=2.1e+02 Score=19.71 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 047775 361 ILGSAQVFAGFVIVNVS 377 (386)
Q Consensus 361 ~~G~~lIi~g~~l~~~~ 377 (386)
++++++.++|++++..+
T Consensus 25 ifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 44566677776666544
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.30 E-value=1.1e+02 Score=19.75 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcc
Q 047775 45 SLMVVYLPVAFLKDWFCNLLKRRS 68 (386)
Q Consensus 45 ~~~~i~lp~~~~~~~~~~~~~~~~ 68 (386)
.+..+++.+.....|.+..+||++
T Consensus 17 l~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCcccCCC
Confidence 334444433333346667776554
Done!