Query 047775
Match_columns 386
No_of_seqs 270 out of 2282
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 04:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047775.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047775hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 18.3 58 0.0042 16.0 2.8 19 231-249 3-21 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 17.9 2.7E+02 0.02 23.5 9.9 43 233-277 283-326 (383)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 3.3 3.8E+02 0.028 14.0 2.6 20 228-247 16-35 (37)
4 d1iwga8 f.35.1.1 (A:513-566,A: 2.8 9.5E+02 0.069 17.6 8.6 38 332-369 82-122 (222)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 2.8 1.1E+03 0.08 18.3 19.9 12 163-174 283-294 (447)
6 d1uptb_ a.193.1.1 (B:) Golgi a 2.5 4.8E+02 0.035 15.4 2.2 21 180-200 12-32 (58)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 2.4 4.4E+02 0.032 12.8 2.6 7 184-190 21-27 (30)
8 d2yvxa3 f.57.1.1 (A:276-448) M 1.5 1.4E+03 0.1 16.1 7.6 25 232-256 46-70 (173)
9 d1pv7a_ f.38.1.2 (A:) Lactose 1.5 1.6E+03 0.12 16.5 10.4 18 24-41 29-47 (417)
10 d1rh5b_ f.23.28.1 (B:) Preprot 1.2 1.1E+03 0.08 13.5 3.1 19 232-250 31-49 (56)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.32 E-value=58 Score=15.95 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 047775 231 VGDLFGLLSAMSYGLFTVL 249 (386)
Q Consensus 231 ~G~~l~l~aa~~~a~~~v~ 249 (386)
+|.+.+-++.++||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5778888888999888643
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=17.90 E-value=2.7e+02 Score=23.53 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=22.3
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
Q 047775 233 DLFGLL-SAMSYGLFTVLLKKFCGEEGEKIDVQKLFGYIGLFTLVA 277 (386)
Q Consensus 233 ~~l~l~-aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (386)
.+..++ +.+++-.+..+.+|+. -+++.+....=+..|+.+.+.
T Consensus 283 ~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vHg~~Gi~G~l~ 326 (383)
T d1u7ga_ 283 LIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVHGVCGIVGCIM 326 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhhcc--cccccceEeehhhhHHHHHHH
Confidence 344444 3445555555544543 245666555555566666653
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.35 E-value=3.8e+02 Score=14.04 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.0
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 047775 228 RSLVGDLFGLLSAMSYGLFT 247 (386)
Q Consensus 228 ~~~~G~~l~l~aa~~~a~~~ 247 (386)
...+|.++.+.-++.++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34578888888888887764
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.81 E-value=9.5e+02 Score=17.64 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=24.3
Q ss_pred HHHHHhhhhHHHH---HHHHHHHcCCcchHHHHHHHHHHHH
Q 047775 332 VATLGMSLTIPLA---MVADMVIHGRHYSAIYILGSAQVFA 369 (386)
Q Consensus 332 ~~s~~~~l~~p~a---~i~~~i~~ge~~~~~~~~G~~lIi~ 369 (386)
..++...+.+|++ ++....+.|..++....+|.++.+.
T Consensus 82 ~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 82 SIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp SHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3344444555664 4455667899999988888776443
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.77 E-value=1.1e+03 Score=18.28 Aligned_cols=12 Identities=0% Similarity=-0.164 Sum_probs=5.2
Q ss_pred chhhHHHhhccc
Q 047775 163 SVASTTVLSSTS 174 (386)
Q Consensus 163 ~~~~~~~i~~~~ 174 (386)
+....+.+....
T Consensus 283 ~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 283 ALDKSSWAYFLY 294 (447)
T ss_dssp CHHHHHHHHHHH
T ss_pred ccchhhhhhhcc
Confidence 444444444433
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.52 E-value=4.8e+02 Score=15.35 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=15.0
Q ss_pred HHHHHhccccchHHHHHHHHH
Q 047775 180 FIGAFMGQDTLNVAKVVAVLV 200 (386)
Q Consensus 180 lls~~~~~ek~~~~~~~~v~l 200 (386)
++-+...+|..+..|+++.++
T Consensus 12 LfeYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 12 LFEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHcCcchhHHHHHHHHHH
Confidence 445556788888888887765
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.42 E-value=4.4e+02 Score=12.81 Aligned_cols=7 Identities=0% Similarity=-0.026 Sum_probs=3.4
Q ss_pred Hhccccc
Q 047775 184 FMGQDTL 190 (386)
Q Consensus 184 ~~~~ek~ 190 (386)
++++|++
T Consensus 21 iffrepp 27 (30)
T d2axtt1 21 IFFREPP 27 (30)
T ss_dssp HHTSCCC
T ss_pred HHhcCCC
Confidence 3445554
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=1.53 E-value=1.4e+03 Score=16.09 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCC
Q 047775 232 GDLFGLLSAMSYGLFTVLLKKFCGE 256 (386)
Q Consensus 232 G~~l~l~aa~~~a~~~v~~k~~~~~ 256 (386)
-.+....+-..-=...+..|.+..+
T Consensus 46 Pli~~~gGN~G~Qs~ti~iR~La~g 70 (173)
T d2yvxa3 46 PVLLGTGGNTGNQSATLIIRALATR 70 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcc
Confidence 4444444444433344555655543
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.47 E-value=1.6e+03 Score=16.46 Aligned_cols=18 Identities=0% Similarity=-0.385 Sum_probs=7.8
Q ss_pred HHHHHHHhc-CCCcEEeee
Q 047775 24 EVTQDIFSD-YKQPFAVTY 41 (386)
Q Consensus 24 ~~~~~~~~~-~~~P~~~~~ 41 (386)
.+..++.++ +.++..+..
T Consensus 29 ~l~~~l~~~~g~s~~~~g~ 47 (417)
T d1pv7a_ 29 FFPIWLHDINHISKSDTGI 47 (417)
T ss_dssp HHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHH
Confidence 344444443 445544333
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.24 E-value=1.1e+03 Score=13.55 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 047775 232 GDLFGLLSAMSYGLFTVLL 250 (386)
Q Consensus 232 G~~l~l~aa~~~a~~~v~~ 250 (386)
|..+.+.+.+.|.++.+..
T Consensus 31 ~iG~~i~G~IGf~I~li~~ 49 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIHVPAT 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Done!