BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047778
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
EC +CL+E +G+ + L RC HGFH++C+ WL SH +CP+CR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 50 SAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS 109
S E+ A ++ + G E C IC SE+V+GDV L C H FH C+ WL
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76
Query: 110 HYSCPICRC 118
+CP+CRC
Sbjct: 77 SGTCPVCRC 85
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
CV+C+ +F +++VL C H FH++C+ KWL ++ +CPICR
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
G+ EC +C ++ G+ ++ L C H FH CI WL H SCP+CR
Sbjct: 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCN 119
+C ICLS EG+ ++ L C H FH C+ +WL ++ CPICR +
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVD 60
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 48 KPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107
K E A V S + E +C+IC F+E + C H F S CI +W+
Sbjct: 29 KEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWM 84
Query: 108 YSHYSCPICR 117
CPICR
Sbjct: 85 KRKIECPICR 94
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 48 KPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107
K E A V S + E +C+IC F+E + C H F S CI +W+
Sbjct: 29 KEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWM 84
Query: 108 YSHYSCPICR 117
CPICR
Sbjct: 85 KRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 48 KPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107
K E A V S + E +C+IC F+E V C H F S CI +W+
Sbjct: 40 KEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWM 95
Query: 108 YSHYSCPICR 117
CPICR
Sbjct: 96 KRKIECPICR 105
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 63 SAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
S +K C +CL +F D + + CKH FH +C+ KWL CP+C
Sbjct: 6 SGKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 63 SAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
S +K E EC IC+ + ++ C H F +CI KW H +CPICR
Sbjct: 6 SGRVKQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 70 GAEAECVICL---SEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
GA C IC+ SE V+ + V C H F SQC++ L + +CP CR
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 63 SAGIKLTGAEAECVICL---SEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
+ G++ +G C IC+ SE V+ + V C H F SQC++ L + +CP CR
Sbjct: 2 TTGLRPSGT-VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
C+ C +E + D + V C H FH+ C+ W+ + CP+C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 66 IKLTGAEAECVICL---SEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
I + C IC+ SE V+ + V C H F SQC++ L + +CP CR
Sbjct: 66 IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 68 LTGAEAECVICL---SEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
+ C IC+ SE V+ + V C H F SQC++ L + +CP CR
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 71 AEAECVICL---SEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117
C IC+ SE V+ + V C H F SQC++ L + +CP CR
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
+ C ICL + V+ + C H H C ++ L Y CP+C
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
++ C ICL + V+ + C H H C ++ L Y CP+C
Sbjct: 4 SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 63 SAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW---LYSHYSCPIC 116
S ++ EA C +CL E +I+ C H F CI +W L + CP+C
Sbjct: 6 SGALENLQVEASCSVCLEYLKEPVIIE----CGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 64 AGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
A +K C IC F ++ ++ +C H + S CI+K+L CP C
Sbjct: 14 AVMKTIDDLLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYS---CPIC 116
EC IC+ F E + L C H QC++K L S + CP C
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 63 SAGIKLT--GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
+ IK+T CV+C F++ I C H F CI ++L + CPIC
Sbjct: 4 TTRIKITELNPHLMCVLCGGYFIDATTII---ECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
CV+C F+ D ++E C H F CI ++L + CPIC
Sbjct: 18 CVLCGGYFI--DATTIIE-CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116
CV+C F++ I C H F CI ++L + CPIC
Sbjct: 14 CVLCGGYFIDATTII---ECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 CKHGFHSQCIQKWLYSHYSCPI 115
C H FH CI +WL + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 48 KPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEG---DVIQVLERCKHGFHSQCIQ 104
K +A A +A +VV + I C+ C + + C H FH CI
Sbjct: 18 KSNASAQSAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 77
Query: 105 KWLYSHYSCPI 115
+WL + CP+
Sbjct: 78 RWLKTRQVCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 31 TPSPSPXXXXXXXXXXXKPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEG---DV 87
TPS + K +A A A +VV + I C+ C + +
Sbjct: 7 TPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATSEEC 66
Query: 88 IQVLERCKHGFHSQCIQKWLYSHYSCPI 115
C H FH CI +WL + CP+
Sbjct: 67 TVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 CKHGFHSQCIQKWLYSHYSCPI 115
C H FH CI +WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 CKHGFHSQCIQKWLYSHYSCPI 115
C H FH CI +WL + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 CKHGFHSQCIQKWLYSHYSCPI 115
C H FH CI +WL + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 94 CKHGFHSQCIQKWLYSHYSCPI 115
C H FH CI +WL + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY 108
C+ + EF+E D+ +VL+ K G I+ +LY
Sbjct: 93 CLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLY 126
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY 108
C+ + EF+E D+ +VL+ K G I+ +LY
Sbjct: 93 CLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLY 126
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 94 CKHGFHSQCIQKWLYSHYSCPICR 117
C H F CI +W+ + +CP+C+
Sbjct: 24 CLHAFCYVCITRWIRQNPTCPLCK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,988,306
Number of Sequences: 62578
Number of extensions: 88359
Number of successful extensions: 255
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 44
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)