Query 047778
Match_columns 135
No_of_seqs 218 out of 1689
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 3.9E-23 8.5E-28 152.5 7.9 84 46-131 204-288 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 5.7E-19 1.2E-23 95.0 2.5 44 73-117 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.6 6.3E-16 1.4E-20 91.6 3.4 46 71-117 18-73 (73)
4 PHA02929 N1R/p28-like protein; 99.6 1.6E-15 3.5E-20 107.8 5.2 78 45-122 146-228 (238)
5 COG5540 RING-finger-containing 99.5 9.5E-15 2.1E-19 105.4 3.9 52 70-122 321-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.5 8.5E-14 1.8E-18 103.0 6.4 56 69-125 284-349 (491)
7 KOG0320 Predicted E3 ubiquitin 99.4 1.7E-13 3.7E-18 92.1 3.4 60 63-124 122-181 (187)
8 PF12861 zf-Apc11: Anaphase-pr 99.4 2.8E-13 6.1E-18 81.2 3.3 53 71-123 20-84 (85)
9 KOG0317 Predicted E3 ubiquitin 99.4 2.1E-13 4.5E-18 98.0 3.1 52 69-124 236-287 (293)
10 PF13920 zf-C3HC4_3: Zinc fing 99.4 4.9E-13 1.1E-17 73.6 3.8 46 72-121 2-48 (50)
11 PLN03208 E3 ubiquitin-protein 99.4 6.1E-13 1.3E-17 91.4 4.5 49 70-122 16-80 (193)
12 KOG0823 Predicted E3 ubiquitin 99.4 3.3E-13 7.3E-18 94.3 3.0 52 69-124 44-98 (230)
13 PF13923 zf-C3HC4_2: Zinc fing 99.4 7.8E-13 1.7E-17 69.1 3.5 39 75-116 1-39 (39)
14 PHA02926 zinc finger-like prot 99.3 1.1E-12 2.3E-17 91.3 3.4 55 70-124 168-233 (242)
15 cd00162 RING RING-finger (Real 99.3 2.2E-12 4.8E-17 68.7 3.6 44 74-120 1-45 (45)
16 PF15227 zf-C3HC4_4: zinc fing 99.2 5.8E-12 1.3E-16 66.7 2.6 38 75-116 1-42 (42)
17 PF14634 zf-RING_5: zinc-RING 99.2 9.8E-12 2.1E-16 66.6 3.2 44 74-118 1-44 (44)
18 KOG0802 E3 ubiquitin ligase [P 99.2 7.4E-12 1.6E-16 99.2 2.6 54 70-124 289-344 (543)
19 COG5194 APC11 Component of SCF 99.2 1.3E-11 2.9E-16 72.3 2.5 54 72-125 20-85 (88)
20 PF00097 zf-C3HC4: Zinc finger 99.2 1.7E-11 3.6E-16 64.6 2.6 39 75-116 1-41 (41)
21 smart00504 Ubox Modified RING 99.1 1.6E-10 3.4E-15 66.3 4.1 46 73-122 2-47 (63)
22 smart00184 RING Ring finger. E 99.1 1.3E-10 2.8E-15 59.7 3.1 38 75-116 1-39 (39)
23 KOG1734 Predicted RING-contain 99.0 8.4E-11 1.8E-15 84.0 1.2 56 69-125 221-285 (328)
24 TIGR00599 rad18 DNA repair pro 99.0 3.1E-10 6.7E-15 86.2 3.8 51 69-123 23-73 (397)
25 KOG1493 Anaphase-promoting com 99.0 4.9E-11 1.1E-15 69.4 -0.6 52 71-122 19-82 (84)
26 KOG2930 SCF ubiquitin ligase, 98.9 2.8E-10 6.1E-15 70.0 1.5 56 70-125 44-112 (114)
27 PF13445 zf-RING_UBOX: RING-ty 98.9 2.1E-09 4.5E-14 57.0 3.2 34 75-110 1-35 (43)
28 COG5574 PEX10 RING-finger-cont 98.9 1.1E-09 2.3E-14 78.2 2.6 51 70-124 213-265 (271)
29 KOG2164 Predicted E3 ubiquitin 98.9 1.2E-09 2.5E-14 84.2 2.7 52 72-127 186-242 (513)
30 KOG0828 Predicted E3 ubiquitin 98.8 4.7E-09 1E-13 80.6 4.9 52 70-122 569-635 (636)
31 smart00744 RINGv The RING-vari 98.7 1.2E-08 2.5E-13 55.7 3.1 42 74-117 1-49 (49)
32 TIGR00570 cdk7 CDK-activating 98.7 2.1E-08 4.5E-13 73.8 4.2 53 72-125 3-58 (309)
33 KOG0287 Postreplication repair 98.6 1.5E-08 3.2E-13 74.8 1.8 50 71-124 22-71 (442)
34 PF11793 FANCL_C: FANCL C-term 98.6 6.9E-09 1.5E-13 60.9 -0.2 52 72-123 2-68 (70)
35 PF04564 U-box: U-box domain; 98.6 4.7E-08 1E-12 57.8 2.8 49 71-123 3-52 (73)
36 KOG2177 Predicted E3 ubiquitin 98.5 3.2E-08 6.8E-13 72.2 1.8 44 70-117 11-54 (386)
37 KOG0804 Cytoplasmic Zn-finger 98.5 4.8E-08 1E-12 74.3 2.2 48 71-121 174-222 (493)
38 COG5432 RAD18 RING-finger-cont 98.5 4.4E-08 9.6E-13 71.0 1.8 49 71-123 24-72 (391)
39 KOG0311 Predicted E3 ubiquitin 98.5 2E-08 4.3E-13 74.4 -0.5 58 70-130 41-99 (381)
40 COG5219 Uncharacterized conser 98.5 3.8E-08 8.3E-13 80.7 0.8 52 70-121 1467-1523(1525)
41 KOG1039 Predicted E3 ubiquitin 98.4 1.5E-07 3.2E-12 70.5 2.8 55 70-124 159-224 (344)
42 KOG4265 Predicted E3 ubiquitin 98.4 2.3E-07 5.1E-12 68.9 3.0 50 70-123 288-338 (349)
43 PF14835 zf-RING_6: zf-RING of 98.4 6.4E-08 1.4E-12 54.9 -0.3 48 72-124 7-54 (65)
44 KOG0827 Predicted E3 ubiquitin 98.3 2.5E-07 5.4E-12 69.5 1.9 49 73-121 5-56 (465)
45 KOG4172 Predicted E3 ubiquitin 98.3 1.6E-07 3.5E-12 51.4 0.5 46 72-121 7-54 (62)
46 KOG1645 RING-finger-containing 98.3 7.6E-07 1.6E-11 67.3 3.5 48 72-119 4-54 (463)
47 KOG0824 Predicted E3 ubiquitin 98.2 7.7E-07 1.7E-11 64.9 2.0 54 72-129 7-61 (324)
48 KOG0825 PHD Zn-finger protein 98.1 4.8E-07 1E-11 73.2 -0.2 51 73-124 124-174 (1134)
49 KOG0978 E3 ubiquitin ligase in 98.1 1.2E-06 2.6E-11 70.7 0.8 47 73-123 644-691 (698)
50 KOG4445 Uncharacterized conser 98.0 2.9E-06 6.4E-11 61.9 2.1 54 71-125 114-190 (368)
51 KOG4159 Predicted E3 ubiquitin 98.0 4.8E-06 1E-10 63.7 3.1 53 68-124 80-132 (398)
52 KOG1785 Tyrosine kinase negati 98.0 2.2E-06 4.8E-11 64.8 1.3 50 73-126 370-421 (563)
53 KOG3970 Predicted E3 ubiquitin 97.9 1E-05 2.2E-10 57.0 3.4 56 69-126 47-110 (299)
54 KOG1428 Inhibitor of type V ad 97.9 9.2E-06 2E-10 69.8 3.0 64 58-122 3472-3545(3738)
55 KOG0297 TNF receptor-associate 97.8 1.1E-05 2.3E-10 62.0 2.5 53 69-124 18-70 (391)
56 PF11789 zf-Nse: Zinc-finger o 97.8 1.2E-05 2.6E-10 45.2 1.9 42 71-115 10-53 (57)
57 PF05883 Baculo_RING: Baculovi 97.7 1.3E-05 2.7E-10 52.3 1.2 35 72-107 26-66 (134)
58 KOG2660 Locus-specific chromos 97.7 1E-05 2.2E-10 59.8 0.4 53 70-125 13-65 (331)
59 KOG1941 Acetylcholine receptor 97.7 1.9E-05 4.1E-10 59.7 1.7 46 72-118 365-413 (518)
60 PF14570 zf-RING_4: RING/Ubox 97.6 4.1E-05 8.9E-10 41.2 2.3 45 75-120 1-47 (48)
61 COG5152 Uncharacterized conser 97.6 2.7E-05 5.8E-10 53.9 1.2 45 73-121 197-241 (259)
62 COG5236 Uncharacterized conser 97.5 8.8E-05 1.9E-09 55.5 3.1 68 51-122 40-109 (493)
63 KOG1571 Predicted E3 ubiquitin 97.4 1.9E-05 4.2E-10 59.0 -1.2 46 70-122 303-348 (355)
64 KOG1952 Transcription factor N 97.4 0.0001 2.2E-09 60.5 2.2 50 71-120 190-246 (950)
65 PHA02825 LAP/PHD finger-like p 97.3 0.0002 4.3E-09 47.9 3.0 54 69-126 5-64 (162)
66 KOG2879 Predicted E3 ubiquitin 97.3 0.00032 7E-09 50.8 4.2 52 68-122 235-288 (298)
67 KOG0826 Predicted E3 ubiquitin 97.3 0.00086 1.9E-08 49.8 6.0 48 69-119 297-344 (357)
68 KOG1814 Predicted E3 ubiquitin 97.3 0.00019 4.1E-09 54.7 2.4 47 72-119 184-238 (445)
69 KOG4692 Predicted E3 ubiquitin 97.2 0.00023 5.1E-09 53.4 2.5 49 70-122 420-468 (489)
70 PF10367 Vps39_2: Vacuolar sor 97.2 0.00014 3E-09 45.6 1.0 33 70-104 76-108 (109)
71 PF12906 RINGv: RING-variant d 97.2 0.00029 6.3E-09 37.9 2.1 40 75-116 1-47 (47)
72 PHA02862 5L protein; Provision 97.2 0.00026 5.6E-09 46.6 2.3 47 73-124 3-56 (156)
73 KOG0801 Predicted E3 ubiquitin 97.2 0.00012 2.6E-09 49.1 0.6 30 70-100 175-204 (205)
74 KOG1813 Predicted E3 ubiquitin 97.1 0.00026 5.7E-09 51.8 1.9 47 73-123 242-288 (313)
75 KOG1002 Nucleotide excision re 97.1 0.00023 4.9E-09 56.0 1.4 49 70-122 534-587 (791)
76 PHA03096 p28-like protein; Pro 97.1 0.00029 6.4E-09 51.9 1.8 36 73-108 179-218 (284)
77 KOG3039 Uncharacterized conser 96.9 0.0011 2.3E-08 47.6 3.5 53 72-124 221-273 (303)
78 COG5175 MOT2 Transcriptional r 96.9 0.00079 1.7E-08 50.4 2.6 53 70-123 12-66 (480)
79 PF14447 Prok-RING_4: Prokaryo 96.8 0.00063 1.4E-08 37.5 1.4 46 72-123 7-52 (55)
80 KOG4275 Predicted E3 ubiquitin 96.8 0.00022 4.8E-09 52.1 -0.7 42 72-121 300-342 (350)
81 KOG4739 Uncharacterized protei 96.7 0.00065 1.4E-08 48.4 1.0 50 74-127 5-54 (233)
82 PF14446 Prok-RING_1: Prokaryo 96.7 0.0028 6.1E-08 34.9 3.2 41 71-115 4-44 (54)
83 KOG3268 Predicted E3 ubiquitin 96.7 0.0014 3E-08 44.8 2.4 32 93-124 189-231 (234)
84 PF08746 zf-RING-like: RING-li 96.6 0.0011 2.5E-08 34.9 1.5 41 75-116 1-43 (43)
85 PF04641 Rtf2: Rtf2 RING-finge 96.6 0.0034 7.3E-08 45.8 4.4 55 69-124 110-164 (260)
86 KOG4185 Predicted E3 ubiquitin 96.6 0.0015 3.3E-08 48.3 2.4 47 73-120 4-54 (296)
87 COG5222 Uncharacterized conser 96.6 0.0016 3.4E-08 48.0 2.4 43 73-118 275-318 (427)
88 KOG1940 Zn-finger protein [Gen 96.1 0.0026 5.6E-08 46.6 1.3 46 72-118 158-204 (276)
89 PF07800 DUF1644: Protein of u 95.9 0.0085 1.8E-07 40.2 3.0 33 72-107 2-46 (162)
90 KOG2114 Vacuolar assembly/sort 95.7 0.0039 8.4E-08 51.6 0.7 41 72-118 840-880 (933)
91 KOG2034 Vacuolar sorting prote 95.7 0.0054 1.2E-07 51.0 1.5 36 70-107 815-850 (911)
92 KOG3800 Predicted E3 ubiquitin 95.5 0.015 3.2E-07 42.7 3.0 52 74-125 2-55 (300)
93 KOG0309 Conserved WD40 repeat- 95.4 0.0097 2.1E-07 49.0 2.0 23 93-115 1047-1069(1081)
94 KOG1001 Helicase-like transcri 95.2 0.005 1.1E-07 50.5 -0.0 50 73-127 455-506 (674)
95 KOG0298 DEAD box-containing he 95.1 0.007 1.5E-07 52.2 0.6 45 73-120 1154-1198(1394)
96 PF01102 Glycophorin_A: Glycop 95.1 0.02 4.3E-07 37.1 2.5 24 2-25 71-94 (122)
97 COG5220 TFB3 Cdk activating ki 95.1 0.0079 1.7E-07 43.1 0.7 48 71-118 9-61 (314)
98 PF12273 RCR: Chitin synthesis 95.1 0.028 6E-07 36.7 3.1 18 2-19 4-21 (130)
99 KOG0827 Predicted E3 ubiquitin 95.0 0.0011 2.4E-08 50.4 -4.0 49 72-121 196-245 (465)
100 KOG3161 Predicted E3 ubiquitin 95.0 0.0072 1.5E-07 48.8 0.2 43 73-118 12-54 (861)
101 PF03854 zf-P11: P-11 zinc fin 94.9 0.012 2.7E-07 31.4 0.8 30 94-123 18-48 (50)
102 PF05290 Baculo_IE-1: Baculovi 94.7 0.028 6.2E-07 36.7 2.4 54 71-124 79-135 (140)
103 KOG2932 E3 ubiquitin ligase in 94.4 0.016 3.4E-07 43.1 0.7 43 74-121 92-134 (389)
104 KOG1100 Predicted E3 ubiquitin 94.1 0.024 5.1E-07 40.1 1.1 41 75-123 161-202 (207)
105 KOG3053 Uncharacterized conser 94.0 0.026 5.6E-07 40.8 1.2 53 69-122 17-83 (293)
106 KOG1609 Protein involved in mR 94.0 0.033 7.2E-07 41.3 1.8 52 72-124 78-137 (323)
107 KOG1812 Predicted E3 ubiquitin 93.6 0.028 6.1E-07 43.3 0.9 37 71-108 145-182 (384)
108 COG5183 SSM4 Protein involved 93.1 0.1 2.3E-06 43.6 3.4 57 67-124 7-69 (1175)
109 KOG2817 Predicted E3 ubiquitin 93.1 0.084 1.8E-06 40.4 2.7 47 72-119 334-383 (394)
110 KOG3002 Zn finger protein [Gen 93.0 0.076 1.6E-06 39.6 2.3 44 70-121 46-91 (299)
111 PF10272 Tmpp129: Putative tra 92.5 0.079 1.7E-06 40.4 1.9 27 95-121 312-351 (358)
112 KOG4367 Predicted Zn-finger pr 92.2 0.097 2.1E-06 40.8 1.9 34 70-107 2-35 (699)
113 PF07975 C1_4: TFIIH C1-like d 91.7 0.18 3.8E-06 27.5 2.1 43 75-117 2-50 (51)
114 KOG1815 Predicted E3 ubiquitin 90.8 0.16 3.5E-06 39.9 1.9 37 70-109 68-104 (444)
115 KOG3899 Uncharacterized conser 90.8 0.15 3.3E-06 37.7 1.7 29 94-122 325-366 (381)
116 PF10571 UPF0547: Uncharacteri 90.6 0.13 2.8E-06 24.0 0.8 23 74-98 2-24 (26)
117 smart00249 PHD PHD zinc finger 89.0 0.35 7.6E-06 24.8 1.8 31 74-105 1-31 (47)
118 KOG2068 MOT2 transcription fac 88.8 0.54 1.2E-05 35.4 3.3 55 73-128 250-305 (327)
119 PF13901 DUF4206: Domain of un 88.7 0.35 7.7E-06 34.0 2.2 40 72-117 152-196 (202)
120 KOG0825 PHD Zn-finger protein 88.6 0.31 6.7E-06 40.8 2.0 51 72-122 96-155 (1134)
121 KOG4362 Transcriptional regula 88.6 0.12 2.6E-06 42.4 -0.2 48 72-123 21-71 (684)
122 PF02891 zf-MIZ: MIZ/SP-RING z 88.5 0.64 1.4E-05 25.1 2.7 43 73-119 3-50 (50)
123 KOG0269 WD40 repeat-containing 87.9 0.57 1.2E-05 39.0 3.1 40 74-115 781-820 (839)
124 KOG3113 Uncharacterized conser 87.7 0.76 1.7E-05 33.4 3.4 52 72-125 111-162 (293)
125 TIGR00622 ssl1 transcription f 87.3 0.68 1.5E-05 29.5 2.6 46 72-117 55-110 (112)
126 KOG1812 Predicted E3 ubiquitin 86.8 0.38 8.2E-06 37.2 1.5 43 73-116 307-351 (384)
127 KOG1829 Uncharacterized conser 86.7 0.26 5.6E-06 39.9 0.6 43 71-117 510-557 (580)
128 KOG4718 Non-SMC (structural ma 86.1 0.45 9.8E-06 33.6 1.5 44 72-118 181-224 (235)
129 PF14569 zf-UDP: Zinc-binding 86.1 1.4 3E-05 26.2 3.3 55 71-125 8-66 (80)
130 PF00628 PHD: PHD-finger; Int 86.0 0.42 9.1E-06 25.5 1.0 44 74-118 1-50 (51)
131 PF01363 FYVE: FYVE zinc finge 86.0 0.37 7.9E-06 27.6 0.8 38 70-107 7-44 (69)
132 PF12669 P12: Virus attachment 85.9 1.3 2.7E-05 24.8 3.0 9 15-23 17-25 (58)
133 KOG0802 E3 ubiquitin ligase [P 84.8 0.47 1E-05 38.3 1.2 48 70-125 477-524 (543)
134 KOG2066 Vacuolar assembly/sort 84.3 0.39 8.5E-06 40.0 0.6 43 72-116 784-830 (846)
135 PF13719 zinc_ribbon_5: zinc-r 83.3 0.85 1.8E-05 23.0 1.4 26 74-99 4-36 (37)
136 cd00065 FYVE FYVE domain; Zinc 82.7 1.1 2.3E-05 24.5 1.8 35 73-107 3-37 (57)
137 smart00132 LIM Zinc-binding do 82.6 1.7 3.6E-05 21.2 2.4 37 75-121 2-38 (39)
138 PF00412 LIM: LIM domain; Int 82.5 1.3 2.8E-05 24.1 2.1 39 75-123 1-39 (58)
139 PF05393 Hum_adeno_E3A: Human 82.1 1.9 4E-05 26.2 2.7 22 4-25 41-62 (94)
140 smart00064 FYVE Protein presen 81.8 1.6 3.4E-05 24.8 2.4 36 72-107 10-45 (68)
141 PF12273 RCR: Chitin synthesis 81.7 0.82 1.8E-05 29.7 1.2 23 2-24 7-29 (130)
142 KOG3842 Adaptor protein Pellin 81.7 2.3 5E-05 32.1 3.6 52 71-123 340-416 (429)
143 PF06844 DUF1244: Protein of u 81.4 1 2.2E-05 25.8 1.4 11 98-108 12-22 (68)
144 PF14991 MLANA: Protein melan- 80.5 0.44 9.5E-06 30.3 -0.3 20 3-22 30-49 (118)
145 KOG3005 GIY-YIG type nuclease 79.9 1.2 2.7E-05 32.6 1.7 48 73-120 183-242 (276)
146 PF13717 zinc_ribbon_4: zinc-r 79.7 1.4 3.1E-05 22.0 1.5 27 73-99 3-36 (36)
147 PLN02189 cellulose synthase 79.7 2.9 6.2E-05 36.4 4.0 52 71-122 33-88 (1040)
148 KOG3579 Predicted E3 ubiquitin 78.2 1.2 2.7E-05 32.9 1.3 40 71-110 267-306 (352)
149 PF06679 DUF1180: Protein of u 76.1 3.3 7.2E-05 28.2 2.9 21 2-22 101-121 (163)
150 KOG0824 Predicted E3 ubiquitin 76.0 1.2 2.5E-05 33.3 0.7 53 70-125 103-155 (324)
151 PF06906 DUF1272: Protein of u 75.6 6.1 0.00013 21.9 3.3 47 73-123 6-54 (57)
152 PF05545 FixQ: Cbb3-type cytoc 75.4 3 6.6E-05 22.2 2.1 21 3-23 14-34 (49)
153 PF06750 DiS_P_DiS: Bacterial 74.8 10 0.00022 23.2 4.6 38 72-122 33-70 (92)
154 COG4736 CcoQ Cbb3-type cytochr 74.5 4.7 0.0001 22.7 2.7 22 3-24 14-35 (60)
155 KOG3799 Rab3 effector RIM1 and 74.2 0.87 1.9E-05 29.9 -0.3 41 70-118 63-115 (169)
156 PF11057 Cortexin: Cortexin of 73.3 5.5 0.00012 23.4 2.9 24 2-25 33-56 (81)
157 PF15102 TMEM154: TMEM154 prot 73.0 3.5 7.7E-05 27.5 2.3 6 102-107 129-134 (146)
158 PLN02436 cellulose synthase A 72.5 5.8 0.00013 34.7 4.0 52 71-122 35-90 (1094)
159 KOG3039 Uncharacterized conser 72.0 4 8.8E-05 29.7 2.6 33 71-107 42-74 (303)
160 PF10497 zf-4CXXC_R1: Zinc-fin 71.5 7 0.00015 24.6 3.3 25 95-119 37-70 (105)
161 PRK11486 flagellar biosynthesi 71.3 4.9 0.00011 26.1 2.6 22 2-23 22-43 (124)
162 PF06024 DUF912: Nucleopolyhed 70.9 2.2 4.8E-05 26.6 1.0 20 5-24 71-90 (101)
163 KOG2807 RNA polymerase II tran 70.4 5 0.00011 30.4 2.8 46 72-118 330-375 (378)
164 COG5109 Uncharacterized conser 70.0 3.9 8.5E-05 30.9 2.2 45 72-117 336-383 (396)
165 KOG2979 Protein involved in DN 68.6 3.3 7.1E-05 30.2 1.5 40 73-115 177-218 (262)
166 PF07649 C1_3: C1-like domain; 68.5 5.9 0.00013 18.6 2.0 29 74-103 2-30 (30)
167 PF15050 SCIMP: SCIMP protein 68.1 7.2 0.00016 25.2 2.8 9 14-22 30-38 (133)
168 PF05961 Chordopox_A13L: Chord 67.9 15 0.00032 21.1 3.8 11 5-15 9-19 (68)
169 PF05715 zf-piccolo: Piccolo Z 66.9 4.3 9.4E-05 22.8 1.5 14 110-123 2-15 (61)
170 PHA02610 uvsY.-2 hypothetical 66.9 2.6 5.7E-05 22.9 0.6 21 112-133 3-23 (53)
171 PLN02915 cellulose synthase A 66.9 9.9 0.00021 33.3 4.2 52 71-122 14-69 (1044)
172 PF04710 Pellino: Pellino; In 66.1 2 4.2E-05 33.3 0.0 51 71-122 327-402 (416)
173 PLN02195 cellulose synthase A 65.9 9 0.0002 33.2 3.8 51 71-121 5-59 (977)
174 PLN02638 cellulose synthase A 65.5 8.4 0.00018 33.8 3.5 51 71-121 16-70 (1079)
175 KOG2231 Predicted E3 ubiquitin 65.3 6.9 0.00015 32.5 2.9 48 74-125 2-56 (669)
176 smart00647 IBR In Between Ring 65.2 1.7 3.6E-05 24.1 -0.4 21 86-106 38-58 (64)
177 PF12606 RELT: Tumour necrosis 64.7 21 0.00045 19.3 3.9 24 3-26 7-30 (50)
178 PF07191 zinc-ribbons_6: zinc- 63.9 2.4 5.2E-05 24.7 0.1 40 73-121 2-41 (70)
179 PF05084 GRA6: Granule antigen 63.4 10 0.00023 25.8 3.1 24 2-25 154-177 (215)
180 KOG4185 Predicted E3 ubiquitin 63.4 0.9 1.9E-05 33.6 -2.2 48 72-119 207-265 (296)
181 COG3492 Uncharacterized protei 62.9 4.4 9.6E-05 24.8 1.1 11 98-108 43-53 (104)
182 KOG4323 Polycomb-like PHD Zn-f 61.2 4.1 9E-05 32.3 1.0 60 72-131 168-236 (464)
183 PF06667 PspB: Phage shock pro 60.8 12 0.00027 22.0 2.8 13 11-23 16-28 (75)
184 TIGR02976 phageshock_pspB phag 59.9 20 0.00044 21.1 3.5 8 15-22 20-27 (75)
185 PF07282 OrfB_Zn_ribbon: Putat 59.3 8.8 0.00019 21.7 2.0 35 72-106 28-64 (69)
186 PLN02400 cellulose synthase 58.5 11 0.00024 33.1 3.1 53 71-123 35-91 (1085)
187 PF14311 DUF4379: Domain of un 57.8 6.4 0.00014 21.4 1.1 23 93-116 33-55 (55)
188 COG4647 AcxC Acetone carboxyla 56.0 6.8 0.00015 25.7 1.2 21 76-100 61-81 (165)
189 PRK09458 pspB phage shock prot 55.8 24 0.00052 20.8 3.4 20 6-25 11-30 (75)
190 COG5627 MMS21 DNA repair prote 55.6 6.2 0.00013 28.6 1.0 46 72-120 189-238 (275)
191 PF04216 FdhE: Protein involve 55.5 1.2 2.6E-05 33.0 -2.7 47 71-118 171-219 (290)
192 PF15050 SCIMP: SCIMP protein 55.2 15 0.00032 23.8 2.6 24 5-28 17-40 (133)
193 KOG2071 mRNA cleavage and poly 55.1 6.5 0.00014 32.0 1.2 35 70-106 511-556 (579)
194 PHA03049 IMV membrane protein; 55.0 36 0.00078 19.5 3.8 8 6-13 10-17 (68)
195 PLN02248 cellulose synthase-li 54.4 15 0.00033 32.4 3.2 29 93-121 149-177 (1135)
196 TIGR02736 cbb3_Q_epsi cytochro 54.4 24 0.00053 19.5 3.0 19 2-20 6-24 (56)
197 PRK11088 rrmA 23S rRNA methylt 54.3 9.3 0.0002 27.8 1.8 25 73-98 3-27 (272)
198 KOG1729 FYVE finger containing 54.2 2.1 4.6E-05 31.8 -1.5 37 73-110 215-251 (288)
199 COG3190 FliO Flagellar biogene 54.1 18 0.00038 24.0 2.9 22 2-23 28-49 (137)
200 PF10083 DUF2321: Uncharacteri 53.9 6.6 0.00014 26.5 0.9 45 77-124 9-53 (158)
201 PRK13415 flagella biosynthesis 53.6 15 0.00033 26.2 2.7 23 1-23 71-94 (219)
202 PF10146 zf-C4H2: Zinc finger- 53.5 9.8 0.00021 27.4 1.8 26 98-123 196-221 (230)
203 PF11395 DUF2873: Protein of u 53.2 20 0.00043 18.1 2.3 14 6-19 18-31 (43)
204 PF09943 DUF2175: Uncharacteri 52.2 16 0.00035 22.8 2.4 33 73-107 3-35 (101)
205 TIGR00686 phnA alkylphosphonat 52.0 8.7 0.00019 24.3 1.1 26 73-98 3-29 (109)
206 PRK03564 formate dehydrogenase 51.1 6.6 0.00014 29.6 0.6 47 71-118 186-234 (309)
207 PF15102 TMEM154: TMEM154 prot 51.0 12 0.00025 25.1 1.7 10 6-15 67-76 (146)
208 TIGR03500 FliO_TIGR flagellar 50.9 19 0.00042 20.4 2.5 18 2-19 2-19 (69)
209 PF12191 stn_TNFRSF12A: Tumour 50.8 5.1 0.00011 26.0 0.0 16 7-22 90-105 (129)
210 PF04423 Rad50_zn_hook: Rad50 50.4 5.1 0.00011 21.7 -0.1 10 112-121 22-31 (54)
211 PF13832 zf-HC5HC2H_2: PHD-zin 50.2 14 0.00031 22.9 2.0 33 71-106 54-88 (110)
212 PRK11827 hypothetical protein; 50.0 6.5 0.00014 22.1 0.3 19 105-123 3-21 (60)
213 COG3190 FliO Flagellar biogene 49.5 23 0.00051 23.4 2.9 24 1-24 31-54 (137)
214 PF15106 TMEM156: TMEM156 prot 49.3 18 0.00039 25.8 2.5 22 2-23 181-202 (226)
215 PF05605 zf-Di19: Drought indu 49.3 1.2 2.5E-05 24.3 -2.8 13 72-84 2-14 (54)
216 PF13771 zf-HC5HC2H: PHD-like 48.9 12 0.00027 22.2 1.5 32 72-105 36-68 (90)
217 PF00672 HAMP: HAMP domain; I 48.7 28 0.0006 19.2 2.9 21 2-22 2-22 (70)
218 PF15179 Myc_target_1: Myc tar 48.4 33 0.00072 23.9 3.6 19 4-22 32-50 (197)
219 TIGR01195 oadG_fam sodium pump 48.3 48 0.001 19.8 3.9 15 4-18 18-32 (82)
220 COG3813 Uncharacterized protei 48.0 16 0.00034 21.4 1.7 27 95-123 28-54 (84)
221 KOG1815 Predicted E3 ubiquitin 47.9 5.1 0.00011 31.6 -0.4 37 73-109 227-267 (444)
222 PF02318 FYVE_2: FYVE-type zin 47.8 12 0.00025 23.9 1.3 45 71-118 53-102 (118)
223 KOG4451 Uncharacterized conser 47.3 19 0.00041 26.0 2.4 27 98-124 251-277 (286)
224 PF05502 Dynactin_p62: Dynacti 47.2 11 0.00024 30.2 1.3 43 72-127 26-69 (483)
225 PF11023 DUF2614: Protein of u 47.1 18 0.0004 23.0 2.1 30 91-126 72-101 (114)
226 PF06676 DUF1178: Protein of u 47.0 6.5 0.00014 26.4 0.0 26 94-124 10-46 (148)
227 PF11346 DUF3149: Protein of u 46.9 37 0.0008 17.6 2.9 15 4-18 18-32 (42)
228 COG4847 Uncharacterized protei 46.9 28 0.00062 21.5 2.8 35 72-108 6-40 (103)
229 PF09723 Zn-ribbon_8: Zinc rib 46.7 3 6.6E-05 21.5 -1.3 25 93-118 10-34 (42)
230 PF15176 LRR19-TM: Leucine-ric 46.5 28 0.00061 21.7 2.8 12 3-14 22-33 (102)
231 PF10694 DUF2500: Protein of u 46.4 6.6 0.00014 24.7 0.0 22 2-23 3-24 (110)
232 PF13974 YebO: YebO-like prote 46.4 21 0.00045 21.3 2.1 19 5-23 4-22 (80)
233 PRK05978 hypothetical protein; 46.1 15 0.00031 24.7 1.6 25 96-125 43-67 (148)
234 COG3357 Predicted transcriptio 45.2 9.6 0.00021 23.3 0.6 28 93-124 63-90 (97)
235 PF01102 Glycophorin_A: Glycop 44.4 20 0.00044 23.2 2.0 28 2-29 68-95 (122)
236 PF06682 DUF1183: Protein of u 44.2 46 0.001 25.3 4.1 19 2-20 159-177 (318)
237 PRK10220 hypothetical protein; 44.1 18 0.00038 23.0 1.6 26 73-98 4-30 (111)
238 PF10235 Cript: Microtubule-as 44.0 24 0.00053 21.6 2.2 40 72-124 44-83 (90)
239 PHA02681 ORF089 virion membran 43.7 65 0.0014 19.4 3.9 14 47-60 50-63 (92)
240 PF08274 PhnA_Zn_Ribbon: PhnA 43.4 6.9 0.00015 18.8 -0.2 25 73-97 3-28 (30)
241 PF09125 COX2-transmemb: Cytoc 42.9 37 0.00081 17.0 2.4 16 2-17 18-33 (38)
242 PF14169 YdjO: Cold-inducible 42.8 24 0.00053 19.8 1.9 16 70-85 37-52 (59)
243 PHA02650 hypothetical protein; 42.8 47 0.001 19.8 3.2 18 4-21 55-72 (81)
244 PF02038 ATP1G1_PLM_MAT8: ATP1 41.8 15 0.00032 19.9 0.9 9 5-13 24-32 (50)
245 PF07227 DUF1423: Protein of u 41.6 21 0.00045 28.3 2.0 32 74-106 130-164 (446)
246 PF15353 HECA: Headcase protei 41.5 19 0.00041 22.7 1.5 13 94-106 40-52 (107)
247 PF06160 EzrA: Septation ring 41.5 23 0.0005 28.9 2.4 22 2-23 2-23 (560)
248 PF08374 Protocadherin: Protoc 41.4 32 0.00069 24.6 2.7 11 6-16 51-61 (221)
249 PF15069 FAM163: FAM163 family 41.0 54 0.0012 21.8 3.6 7 72-78 91-97 (143)
250 PF01528 Herpes_glycop: Herpes 40.9 45 0.00098 25.9 3.7 19 5-23 315-333 (374)
251 TIGR01562 FdhE formate dehydro 40.9 7.5 0.00016 29.2 -0.4 41 72-118 184-232 (305)
252 KOG4443 Putative transcription 40.7 16 0.00036 30.3 1.4 49 72-121 18-73 (694)
253 KOG2041 WD40 repeat protein [G 40.3 24 0.00053 30.0 2.3 49 70-122 1129-1186(1189)
254 cd01324 cbb3_Oxidase_CcoQ Cyto 39.9 29 0.00063 18.5 1.9 14 9-22 21-34 (48)
255 PHA02844 putative transmembran 39.8 44 0.00096 19.6 2.7 17 4-20 54-70 (75)
256 PRK05886 yajC preprotein trans 39.5 23 0.00049 22.5 1.6 7 14-20 16-22 (109)
257 PF15345 TMEM51: Transmembrane 39.2 25 0.00055 25.3 2.0 16 3-18 65-80 (233)
258 PF04971 Lysis_S: Lysis protei 38.9 30 0.00065 20.0 1.9 16 10-25 46-61 (68)
259 PF03107 C1_2: C1 domain; Int 38.7 18 0.0004 17.0 0.9 28 74-102 2-29 (30)
260 PF10886 DUF2685: Protein of u 37.5 16 0.00034 20.1 0.6 12 112-123 3-14 (54)
261 TIGR02098 MJ0042_CXXC MJ0042 f 37.1 34 0.00073 16.8 1.8 9 74-82 4-12 (38)
262 PF01485 IBR: IBR domain; Int 37.1 1.6 3.5E-05 24.1 -3.6 34 73-106 19-58 (64)
263 COG4357 Zinc finger domain con 36.1 32 0.00069 21.4 1.8 29 94-123 65-93 (105)
264 KOG3970 Predicted E3 ubiquitin 36.0 69 0.0015 23.2 3.7 25 2-27 255-279 (299)
265 KOG1356 Putative transcription 35.9 18 0.00038 31.0 0.9 50 71-122 228-283 (889)
266 COG1545 Predicted nucleic-acid 35.6 22 0.00047 23.5 1.2 23 90-120 31-53 (140)
267 PF05191 ADK_lid: Adenylate ki 35.5 18 0.0004 18.0 0.6 30 90-121 3-32 (36)
268 COG2835 Uncharacterized conser 35.5 18 0.00039 20.4 0.7 14 111-124 9-22 (60)
269 KOG2789 Putative Zn-finger pro 35.1 19 0.00041 28.2 0.9 32 73-106 75-106 (482)
270 TIGR02115 potass_kdpF K+-trans 35.0 53 0.0012 15.2 2.5 20 4-23 3-22 (26)
271 PF01708 Gemini_mov: Geminivir 34.7 57 0.0012 19.9 2.8 18 3-20 43-60 (91)
272 PF15168 TRIQK: Triple QxxK/R 34.2 55 0.0012 19.3 2.5 16 4-19 56-71 (79)
273 COG2824 PhnA Uncharacterized Z 34.1 24 0.00053 22.3 1.1 13 73-85 4-16 (112)
274 KOG1244 Predicted transcriptio 33.8 7.1 0.00015 28.9 -1.4 47 74-121 283-333 (336)
275 PF03966 Trm112p: Trm112p-like 32.8 30 0.00065 19.6 1.3 9 90-98 55-63 (68)
276 PRK00418 DNA gyrase inhibitor; 32.7 29 0.00064 19.7 1.2 12 111-122 7-18 (62)
277 TIGR02205 septum_zipA cell div 32.5 38 0.00082 25.3 2.1 19 2-20 5-23 (284)
278 KOG1245 Chromatin remodeling c 32.3 15 0.00033 33.4 0.0 50 70-120 1106-1159(1404)
279 PF13240 zinc_ribbon_2: zinc-r 32.3 5.7 0.00012 17.7 -1.4 6 76-81 3-8 (23)
280 PF03672 UPF0154: Uncharacteri 32.2 88 0.0019 17.8 3.1 9 3-11 3-11 (64)
281 COG4477 EzrA Negative regulato 32.1 53 0.0012 26.8 3.0 22 2-23 5-26 (570)
282 KOG3054 Uncharacterized conser 31.8 58 0.0013 23.9 2.9 6 17-22 21-26 (299)
283 PF09356 Phage_BR0599: Phage c 31.8 66 0.0014 19.0 2.8 25 81-106 40-64 (80)
284 PF10717 ODV-E18: Occlusion-de 31.8 1.2E+02 0.0025 18.4 3.7 14 5-18 31-44 (85)
285 cd00729 rubredoxin_SM Rubredox 31.7 26 0.00057 17.1 0.8 8 111-118 19-26 (34)
286 PF11084 DUF2621: Protein of u 31.7 50 0.0011 21.7 2.3 23 2-24 11-33 (141)
287 PF09451 ATG27: Autophagy-rela 31.4 34 0.00074 25.1 1.7 13 10-22 215-227 (268)
288 PF11118 DUF2627: Protein of u 31.4 55 0.0012 19.4 2.2 22 2-23 45-66 (77)
289 PF04478 Mid2: Mid2 like cell 31.4 14 0.0003 25.0 -0.3 12 12-23 67-78 (154)
290 PRK06531 yajC preprotein trans 31.3 27 0.00059 22.3 1.1 7 98-104 74-80 (113)
291 PF12259 DUF3609: Protein of u 31.3 29 0.00063 26.8 1.4 6 12-17 317-322 (361)
292 PRK05759 F0F1 ATP synthase sub 31.3 53 0.0012 21.6 2.6 17 3-19 9-25 (156)
293 PRK00523 hypothetical protein; 31.3 66 0.0014 18.8 2.5 8 47-54 38-45 (72)
294 PRK01844 hypothetical protein; 31.0 65 0.0014 18.8 2.5 9 14-22 19-27 (72)
295 smart00734 ZnF_Rad18 Rad18-lik 31.0 23 0.00049 16.2 0.5 9 112-120 3-11 (26)
296 PF07423 DUF1510: Protein of u 31.0 31 0.00067 24.7 1.4 15 6-20 21-35 (217)
297 PF11770 GAPT: GRB2-binding ad 30.9 22 0.00047 23.9 0.6 21 3-23 15-35 (158)
298 PRK01741 cell division protein 30.4 55 0.0012 25.0 2.7 23 2-24 6-28 (332)
299 KOG3726 Uncharacterized conser 30.4 27 0.00059 29.2 1.1 41 73-117 655-696 (717)
300 PF06781 UPF0233: Uncharacteri 30.3 58 0.0013 19.8 2.3 21 3-23 37-57 (87)
301 PRK04023 DNA polymerase II lar 30.3 45 0.00098 29.4 2.4 48 70-123 624-676 (1121)
302 smart00531 TFIIE Transcription 30.0 53 0.0011 21.7 2.3 14 111-124 124-137 (147)
303 PF05083 LST1: LST-1 protein; 29.9 1.2E+02 0.0026 17.7 3.7 19 6-24 6-24 (74)
304 PRK01343 zinc-binding protein; 29.9 30 0.00065 19.3 0.9 12 110-121 9-20 (57)
305 PF10265 DUF2217: Uncharacteri 29.8 54 0.0012 26.6 2.7 25 2-26 19-43 (514)
306 COG1862 YajC Preprotein transl 29.6 38 0.00083 21.0 1.5 17 4-20 10-26 (97)
307 PF09538 FYDLN_acid: Protein o 29.6 45 0.00098 21.1 1.8 11 113-123 29-39 (108)
308 COG0675 Transposase and inacti 29.5 43 0.00092 24.6 2.0 33 71-106 308-340 (364)
309 PF09237 GAGA: GAGA factor; I 29.5 16 0.00034 20.0 -0.2 6 113-118 27-32 (54)
310 smart00109 C1 Protein kinase C 29.3 48 0.001 16.7 1.7 33 72-105 11-44 (49)
311 PF13994 PgaD: PgaD-like prote 29.1 1.2E+02 0.0027 19.7 4.0 9 48-56 111-119 (138)
312 PHA02975 hypothetical protein; 29.0 79 0.0017 18.3 2.6 13 6-18 52-64 (69)
313 KOG1512 PHD Zn-finger protein 28.9 24 0.00052 26.4 0.6 30 74-104 316-345 (381)
314 PF15240 Pro-rich: Proline-ric 28.5 47 0.001 23.1 1.9 11 2-12 2-12 (179)
315 PRK14471 F0F1 ATP synthase sub 28.3 64 0.0014 21.6 2.6 17 4-20 14-30 (164)
316 KOG2113 Predicted RNA binding 28.3 49 0.0011 25.2 2.1 43 73-121 344-387 (394)
317 PF00130 C1_1: Phorbol esters/ 28.1 53 0.0011 17.2 1.8 34 71-105 10-45 (53)
318 KOG4430 Topoisomerase I-bindin 28.0 18 0.00039 29.5 -0.2 53 70-122 258-310 (553)
319 COG3763 Uncharacterized protei 28.0 1E+02 0.0022 18.0 2.9 9 14-22 19-27 (71)
320 PRK08476 F0F1 ATP synthase sub 28.0 69 0.0015 21.0 2.6 18 3-20 12-29 (141)
321 COG4858 Uncharacterized membra 28.0 95 0.0021 21.9 3.3 22 4-25 132-153 (226)
322 PF00430 ATP-synt_B: ATP synth 28.0 58 0.0013 20.6 2.2 15 5-19 6-20 (132)
323 PF15145 DUF4577: Domain of un 27.9 56 0.0012 20.9 2.0 23 2-24 68-90 (128)
324 PF03884 DUF329: Domain of unk 27.8 25 0.00055 19.6 0.4 11 112-122 4-14 (57)
325 KOG1538 Uncharacterized conser 27.7 28 0.0006 29.4 0.8 34 88-121 1044-1077(1081)
326 PRK13453 F0F1 ATP synthase sub 27.7 68 0.0015 21.8 2.6 17 4-20 24-40 (173)
327 KOG4268 Uncharacterized conser 27.6 83 0.0018 21.5 2.9 24 2-25 70-93 (189)
328 PHA03286 envelope glycoprotein 27.6 61 0.0013 25.9 2.5 18 6-23 402-419 (492)
329 PF12297 EVC2_like: Ellis van 27.5 69 0.0015 25.3 2.8 23 1-23 70-92 (429)
330 KOG0158 Cytochrome P450 CYP3/C 27.1 99 0.0021 25.1 3.7 31 6-36 8-38 (499)
331 PRK02251 putative septation in 27.0 90 0.0019 19.0 2.7 18 3-20 38-55 (87)
332 PRK11595 DNA utilization prote 26.9 52 0.0011 23.4 2.0 39 73-120 6-44 (227)
333 PF09604 Potass_KdpF: F subuni 26.9 77 0.0017 14.5 3.3 19 3-21 3-21 (25)
334 PF14353 CpXC: CpXC protein 26.9 54 0.0012 20.9 1.9 12 73-84 2-13 (128)
335 PF11694 DUF3290: Protein of u 26.9 86 0.0019 21.0 2.9 6 17-22 36-41 (149)
336 PRK00420 hypothetical protein; 26.8 53 0.0011 21.0 1.8 11 73-83 24-34 (112)
337 PRK13454 F0F1 ATP synthase sub 26.7 72 0.0016 21.9 2.6 14 5-18 38-51 (181)
338 PRK14585 pgaD putative PGA bio 26.3 1.6E+02 0.0035 19.5 4.0 11 47-57 99-109 (137)
339 PF02148 zf-UBP: Zn-finger in 26.2 60 0.0013 18.0 1.8 24 75-101 1-24 (63)
340 PTZ00303 phosphatidylinositol 26.2 44 0.00095 28.9 1.7 35 73-107 461-500 (1374)
341 COG3630 OadG Na+-transporting 26.1 1.4E+02 0.0029 18.1 3.3 17 4-20 21-37 (84)
342 PF11174 DUF2970: Protein of u 25.8 72 0.0016 17.6 2.0 14 3-16 40-53 (56)
343 PF14851 FAM176: FAM176 family 25.7 1.1E+02 0.0025 20.6 3.3 11 3-13 26-36 (153)
344 KOG1973 Chromatin remodeling p 25.6 27 0.00058 25.8 0.3 28 93-120 239-269 (274)
345 KOG0955 PHD finger protein BR1 25.5 33 0.00072 30.3 0.9 37 68-104 215-252 (1051)
346 PF14654 Epiglycanin_C: Mucin, 25.4 1E+02 0.0023 19.2 2.8 18 3-20 26-43 (106)
347 PF06365 CD34_antigen: CD34/Po 25.3 95 0.0021 22.0 3.0 8 17-24 122-129 (202)
348 KOG4577 Transcription factor L 25.3 13 0.00027 27.9 -1.4 30 73-104 93-122 (383)
349 cd00350 rubredoxin_like Rubred 25.1 42 0.00092 16.1 0.9 9 110-118 17-25 (33)
350 PHA03281 envelope glycoprotein 25.1 71 0.0015 26.2 2.6 16 5-20 569-584 (642)
351 PF07204 Orthoreo_P10: Orthore 24.9 71 0.0015 19.7 2.0 13 6-18 52-64 (98)
352 PF10577 UPF0560: Uncharacteri 24.9 83 0.0018 27.0 3.0 21 5-25 283-303 (807)
353 PF06459 RR_TM4-6: Ryanodine R 24.9 81 0.0018 23.4 2.7 18 2-19 175-192 (274)
354 PRK02919 oxaloacetate decarbox 24.7 1.4E+02 0.003 17.9 3.2 17 4-20 21-37 (82)
355 PF09986 DUF2225: Uncharacteri 24.6 53 0.0011 23.3 1.7 13 72-84 5-17 (214)
356 PF07095 IgaA: Intracellular g 24.4 88 0.0019 26.4 3.0 11 15-25 19-29 (705)
357 PF05810 NinF: NinF protein; 24.3 61 0.0013 18.0 1.5 11 98-108 34-44 (58)
358 PRK13460 F0F1 ATP synthase sub 24.1 86 0.0019 21.2 2.6 16 5-20 23-38 (173)
359 PRK00159 putative septation in 23.8 1.1E+02 0.0024 18.6 2.7 18 3-20 37-54 (87)
360 PLN00082 photosystem II reacti 23.7 80 0.0017 18.0 1.9 17 2-18 35-51 (67)
361 PRK14762 membrane protein; Pro 23.5 92 0.002 14.2 2.7 11 4-14 9-19 (27)
362 PF11027 DUF2615: Protein of u 23.4 1.8E+02 0.004 18.2 3.7 18 5-22 58-75 (103)
363 PF12072 DUF3552: Domain of un 23.3 99 0.0021 21.6 2.8 19 3-21 4-22 (201)
364 PF03119 DNA_ligase_ZBD: NAD-d 23.2 29 0.00062 16.2 0.1 10 112-121 1-10 (28)
365 PLN03112 cytochrome P450 famil 23.1 1.5E+02 0.0032 23.5 4.1 22 3-24 7-28 (514)
366 PRK14472 F0F1 ATP synthase sub 23.1 91 0.002 21.1 2.6 15 5-19 25-39 (175)
367 KOG4218 Nuclear hormone recept 22.8 91 0.002 24.2 2.6 14 70-83 13-26 (475)
368 PF05353 Atracotoxin: Delta At 22.8 4.6 0.0001 20.6 -2.8 14 101-114 19-32 (42)
369 PF04226 Transgly_assoc: Trans 22.4 1E+02 0.0022 16.2 2.2 16 2-17 30-45 (48)
370 PRK14584 hmsS hemin storage sy 22.3 1.9E+02 0.0041 19.6 3.8 7 48-54 109-115 (153)
371 COG3115 ZipA Cell division pro 22.3 98 0.0021 23.4 2.7 16 3-18 8-23 (324)
372 PRK13461 F0F1 ATP synthase sub 22.1 1E+02 0.0022 20.5 2.6 16 5-20 12-27 (159)
373 PF10764 Gin: Inhibitor of sig 21.8 55 0.0012 17.3 1.0 29 74-107 1-29 (46)
374 PF13453 zf-TFIIB: Transcripti 21.6 38 0.00082 17.1 0.3 12 112-123 1-12 (41)
375 PF15025 DUF4524: Domain of un 21.4 73 0.0016 21.4 1.7 16 82-98 14-29 (148)
376 PRK09174 F0F1 ATP synthase sub 21.3 96 0.0021 21.9 2.4 14 5-18 60-73 (204)
377 COG0353 RecR Recombinational D 21.3 80 0.0017 22.3 2.0 22 69-90 63-84 (198)
378 PRK14473 F0F1 ATP synthase sub 21.2 1.1E+02 0.0023 20.5 2.6 16 5-20 15-30 (164)
379 PHA02291 hypothetical protein 21.2 1.2E+02 0.0026 19.2 2.6 19 2-20 8-26 (132)
380 PF03988 DUF347: Repeat of Unk 21.2 1.6E+02 0.0034 16.0 3.3 10 6-15 35-44 (55)
381 cd00029 C1 Protein kinase C co 20.9 68 0.0015 16.3 1.3 33 72-105 11-45 (50)
382 PRK12430 putative bifunctional 20.8 1E+02 0.0022 24.0 2.6 22 2-23 27-48 (379)
383 KOG4056 Translocase of outer m 20.7 1.4E+02 0.0031 19.8 2.9 21 5-25 14-34 (143)
384 PF11857 DUF3377: Domain of un 20.4 75 0.0016 18.7 1.4 12 4-15 40-51 (74)
385 COG1622 CyoA Heme/copper-type 20.3 1.3E+02 0.0028 22.0 3.0 10 103-112 216-225 (247)
386 PRK07353 F0F1 ATP synthase sub 20.1 1.3E+02 0.0028 19.3 2.8 16 5-20 12-27 (140)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.9e-23 Score=152.49 Aligned_cols=84 Identities=27% Similarity=0.645 Sum_probs=72.7
Q ss_pred CCCCCHHHHhhCcceeeecCccCCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC-CcccccccccCCC
Q 047778 46 NNKPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY-SCPICRCNCLFSP 124 (135)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~~ 124 (135)
.+...++.++.++...+....+.... +.|+||||+|+.|+.++.|| |+|.||..||+.||.... .||+||+++....
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 46788899999999999987776555 79999999999999999999 999999999999997664 5999999888777
Q ss_pred CCCCCCC
Q 047778 125 TSTPTSP 131 (135)
Q Consensus 125 ~~~~~~~ 131 (135)
..++..+
T Consensus 282 ~~~~~~e 288 (348)
T KOG4628|consen 282 GSEPVSE 288 (348)
T ss_pred CCCCccC
Confidence 6665544
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.75 E-value=5.7e-19 Score=94.99 Aligned_cols=44 Identities=50% Similarity=1.178 Sum_probs=40.1
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
++|+||+++|..++.+..++ |||.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999889999998 999999999999999899999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.60 E-value=6.3e-16 Score=91.62 Aligned_cols=46 Identities=37% Similarity=0.852 Sum_probs=36.1
Q ss_pred CccccccccccccCC----------CeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 71 AEAECVICLSEFVEG----------DVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~----------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
.++.|+||+++|.+. -.+...+ |||.||..||..|++.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999432 2344444 999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.59 E-value=1.6e-15 Score=107.78 Aligned_cols=78 Identities=22% Similarity=0.504 Sum_probs=58.1
Q ss_pred cCCCCCHHHHhhCcceeeecCcc-CCCCccccccccccccCCC----eEEEcCCCCCcccHHHHHHHHhcCCCccccccc
Q 047778 45 NNNKPSAEAAAAHTLVVYSAGIK-LTGAEAECVICLSEFVEGD----VIQVLERCKHGFHSQCIQKWLYSHYSCPICRCN 119 (135)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 119 (135)
..++..+..+..+|.....-... ....+.+|+||++.+.+++ .+.+++.|+|.||.+||..|+..+.+||+||..
T Consensus 146 ~k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~ 225 (238)
T PHA02929 146 KKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225 (238)
T ss_pred HhcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence 34556777788888776442221 2345689999999987643 234555699999999999999999999999998
Q ss_pred ccC
Q 047778 120 CLF 122 (135)
Q Consensus 120 ~~~ 122 (135)
+..
T Consensus 226 ~~~ 228 (238)
T PHA02929 226 FIS 228 (238)
T ss_pred eeE
Confidence 764
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.5e-15 Score=105.43 Aligned_cols=52 Identities=40% Similarity=0.981 Sum_probs=46.3
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-cCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-SHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 122 (135)
+...+|+|||++|..++.++++| |.|.||..|++.|+. .+..||+||..+.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34578999999999999999999 999999999999996 66789999987753
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.5e-14 Score=103.04 Aligned_cols=56 Identities=32% Similarity=0.810 Sum_probs=45.4
Q ss_pred CCCccccccccccc-cCC---------CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 69 TGAEAECVICLSEF-VEG---------DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 69 ~~~~~~C~ICl~~~-~~~---------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
..+|..|.||++++ ..+ .....+| |||+||.+|+..|++++.+||+||.++.....
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 35678999999994 332 1346788 99999999999999999999999999655443
No 7
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.7e-13 Score=92.13 Aligned_cols=60 Identities=30% Similarity=0.555 Sum_probs=47.0
Q ss_pred ecCccCCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 63 SAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 63 ~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.......+.-..|+|||+.+... +.+.++|||+||..||...++....||+|++.+..+.
T Consensus 122 ~v~~~~~~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 122 DVDPLRKEGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccccccccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 33344445557899999998664 3354579999999999999999999999999877653
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.39 E-value=2.8e-13 Score=81.24 Aligned_cols=53 Identities=40% Similarity=0.854 Sum_probs=40.7
Q ss_pred CccccccccccccC--------CC-eEEEcCCCCCcccHHHHHHHHhc---CCCcccccccccCC
Q 047778 71 AEAECVICLSEFVE--------GD-VIQVLERCKHGFHSQCIQKWLYS---HYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~--------~~-~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~~ 123 (135)
+++.|.||...|+. ++ ...+.-.|+|.||..||..|+.. +..||+||+.+..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 47899999999873 22 22344469999999999999964 45799999987654
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-13 Score=97.98 Aligned_cols=52 Identities=29% Similarity=0.617 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.+....|.+|||...++ ..+| |||+||+.||..|...+..||+||....+..
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34567899999998776 4566 9999999999999998899999999876543
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.38 E-value=4.9e-13 Score=73.59 Aligned_cols=46 Identities=33% Similarity=0.759 Sum_probs=38.9
Q ss_pred ccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCccccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+..|.||++...+ +..+| |||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5789999999654 56777 9999 999999999999999999999875
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.37 E-value=6.1e-13 Score=91.38 Aligned_cols=49 Identities=35% Similarity=0.834 Sum_probs=39.7
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----------------CCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----------------HYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----------------~~~CP~Cr~~~~~ 122 (135)
+++.+|+||++.+.++ .+++ |||.||..||..|+.. ...||+||..+..
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4568899999998776 4455 9999999999999842 2469999998855
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.3e-13 Score=94.29 Aligned_cols=52 Identities=29% Similarity=0.687 Sum_probs=40.9
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc---CCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS---HYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~~~ 124 (135)
.....+|.|||+.-+++ .+. .|||.||+.||.+||.. +..||+||..+....
T Consensus 44 ~~~~FdCNICLd~akdP---VvT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCC---EEe-ecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 45678999999997665 333 39999999999999943 345999999876553
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.36 E-value=7.8e-13 Score=69.06 Aligned_cols=39 Identities=41% Similarity=1.020 Sum_probs=32.0
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccc
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 116 (135)
|+||++.+.+ .+..++ |||.||.+|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 345565 99999999999999888899998
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.32 E-value=1.1e-12 Score=91.35 Aligned_cols=55 Identities=31% Similarity=0.652 Sum_probs=42.0
Q ss_pred CCccccccccccccCC-----CeEEEcCCCCCcccHHHHHHHHhcC------CCcccccccccCCC
Q 047778 70 GAEAECVICLSEFVEG-----DVIQVLERCKHGFHSQCIQKWLYSH------YSCPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~-----~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~Cr~~~~~~~ 124 (135)
..+.+|+||||...++ ....+|++|+|.||..||..|...+ .+||+||..+....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 4568999999986432 2345677799999999999998642 35999999876544
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.31 E-value=2.2e-12 Score=68.73 Aligned_cols=44 Identities=48% Similarity=1.078 Sum_probs=35.9
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNC 120 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~ 120 (135)
+|+||++.+. +.+...+ |||.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 3344555 9999999999999976 67799998764
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.24 E-value=5.8e-12 Score=66.69 Aligned_cols=38 Identities=37% Similarity=0.932 Sum_probs=28.7
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC----CCcccc
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH----YSCPIC 116 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~C 116 (135)
|+||++.|.++ ..++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999887 5676 99999999999999543 359987
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.22 E-value=9.8e-12 Score=66.55 Aligned_cols=44 Identities=32% Similarity=0.755 Sum_probs=36.9
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
.|+||++.|.+.....+++ |||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999995555666776 9999999999998856678999985
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.4e-12 Score=99.24 Aligned_cols=54 Identities=31% Similarity=0.728 Sum_probs=45.9
Q ss_pred CCccccccccccccCCCe--EEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 70 GAEAECVICLSEFVEGDV--IQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~--~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
..+..|+||+|.+..+.. ...++ |||+||..|+..|+++..+||+||..+....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 347889999999988654 67888 9999999999999999999999999554443
No 19
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.18 E-value=1.3e-11 Score=72.33 Aligned_cols=54 Identities=30% Similarity=0.706 Sum_probs=41.2
Q ss_pred ccccccccccccC-----------C-CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 72 EAECVICLSEFVE-----------G-DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 72 ~~~C~ICl~~~~~-----------~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
-+.|+||...|.+ + +...+.-.|+|.||.+||..||..+..||++|+.......
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~ 85 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADG 85 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEecc
Confidence 3678888777643 2 2333444599999999999999999999999998876543
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.17 E-value=1.7e-11 Score=64.60 Aligned_cols=39 Identities=41% Similarity=1.126 Sum_probs=32.6
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHh--cCCCcccc
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY--SHYSCPIC 116 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~C 116 (135)
|+||++.+.++ ..+++ |||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998765 24666 999999999999997 45569987
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.08 E-value=1.6e-10 Score=66.34 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=40.2
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|+||++.+.++ .+++ |||+|+..||..|+..+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 5799999999886 4556 99999999999999888899999988754
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.07 E-value=1.3e-10 Score=59.74 Aligned_cols=38 Identities=50% Similarity=1.130 Sum_probs=31.4
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHh-cCCCcccc
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-SHYSCPIC 116 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~C 116 (135)
|+||++.. .....++ |||.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 3456676 999999999999997 56679987
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.4e-11 Score=83.95 Aligned_cols=56 Identities=23% Similarity=0.545 Sum_probs=45.8
Q ss_pred CCCccccccccccccCCC-------eEEEcCCCCCcccHHHHHHHH--hcCCCcccccccccCCCC
Q 047778 69 TGAEAECVICLSEFVEGD-------VIQVLERCKHGFHSQCIQKWL--YSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~-------~~~~l~~C~H~fh~~Ci~~wl--~~~~~CP~Cr~~~~~~~~ 125 (135)
..++..|+||-..+.... ..-.|. |+|+||+.||..|- .++.+||.||..+..++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 346789999999887654 455676 99999999999996 667889999998887654
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=3.1e-10 Score=86.25 Aligned_cols=51 Identities=31% Similarity=0.613 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.+....|+||++.|.++ .+++ |||.||..||..|+.....||+||..+...
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 34567999999999776 3455 999999999999998878899999987654
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.9e-11 Score=69.40 Aligned_cols=52 Identities=40% Similarity=0.880 Sum_probs=38.8
Q ss_pred CccccccccccccC--------C-CeEEEcCCCCCcccHHHHHHHHhc---CCCcccccccccC
Q 047778 71 AEAECVICLSEFVE--------G-DVIQVLERCKHGFHSQCIQKWLYS---HYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~--------~-~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~ 122 (135)
.++.|.||.-+|.. + +...++-.|.|.||..||..|+.. +..||+||+.+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 45599999999864 2 223344469999999999999944 3459999998754
No 26
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.8e-10 Score=69.97 Aligned_cols=56 Identities=25% Similarity=0.648 Sum_probs=43.1
Q ss_pred CCccccccccccccC-------------CCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 70 GAEAECVICLSEFVE-------------GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~-------------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
..-+.|+||...+.+ ++....--.|+|.||..||..||+.+..||+|-+......+
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~qr~ 112 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQRY 112 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEeec
Confidence 345789999876532 33344444699999999999999999999999888776543
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.88 E-value=2.1e-09 Score=56.96 Aligned_cols=34 Identities=35% Similarity=0.663 Sum_probs=21.3
Q ss_pred cccccccccCCC-eEEEcCCCCCcccHHHHHHHHhcC
Q 047778 75 CVICLSEFVEGD-VIQVLERCKHGFHSQCIQKWLYSH 110 (135)
Q Consensus 75 C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~ 110 (135)
|+||.+ |.+.+ ...+|+ |||+|+.+|+..++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 76644 457788 99999999999999643
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.1e-09 Score=78.16 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=40.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHH-HHhcCCC-cccccccccCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQK-WLYSHYS-CPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~-wl~~~~~-CP~Cr~~~~~~~ 124 (135)
..+..|+||++....+ ...+ |||+||..||.. |-.++.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3467899999997665 5555 999999999999 8766655 999999876553
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-09 Score=84.22 Aligned_cols=52 Identities=31% Similarity=0.616 Sum_probs=40.5
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC-----CCcccccccccCCCCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH-----YSCPICRCNCLFSPTST 127 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~CP~Cr~~~~~~~~~~ 127 (135)
+..|||||++...+ .++.|||+||..||.++|... ..||+||..+..+...+
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 67899999997654 444599999999999998543 35999999887754433
No 30
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.7e-09 Score=80.63 Aligned_cols=52 Identities=31% Similarity=0.774 Sum_probs=39.2
Q ss_pred CCccccccccccccCC--------------CeEEEcCCCCCcccHHHHHHHHh-cCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEG--------------DVIQVLERCKHGFHSQCIQKWLY-SHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~--------------~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 122 (135)
....+|+|||.+++-- ....+.| |.|+||..|+..|.. .+..||+||+++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456899999987431 0122445 999999999999997 55689999998753
No 31
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.73 E-value=1.2e-08 Score=55.70 Aligned_cols=42 Identities=29% Similarity=0.793 Sum_probs=31.7
Q ss_pred ccccccccccCCCeEEEcCCCC-----CcccHHHHHHHHhc--CCCccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCK-----HGFHSQCIQKWLYS--HYSCPICR 117 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr 117 (135)
.|.||++. .+++...+.| |. |.+|..|+..|+.. +.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999993 3344455677 75 89999999999944 44799995
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=2.1e-08 Score=73.79 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=39.1
Q ss_pred cccccccccc-ccCCC-eEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCCCC
Q 047778 72 EAECVICLSE-FVEGD-VIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 72 ~~~C~ICl~~-~~~~~-~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~~~ 125 (135)
+..||+|... |..++ .+.+.+ |||.||..|++..+ .....||.|+..+....-
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 4689999996 44444 233344 99999999999976 445579999988776543
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.61 E-value=1.5e-08 Score=74.81 Aligned_cols=50 Identities=32% Similarity=0.595 Sum_probs=42.4
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.-..|.||.+.|..+ .+.| |+|.||.-||..+|..+..||.|+..+.++.
T Consensus 22 ~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 345799999999876 4455 9999999999999999999999998876653
No 34
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.60 E-value=6.9e-09 Score=60.86 Aligned_cols=52 Identities=33% Similarity=0.708 Sum_probs=24.8
Q ss_pred ccccccccccccCCC-e-EEEc--CCCCCcccHHHHHHHHhc---C--------CCcccccccccCC
Q 047778 72 EAECVICLSEFVEGD-V-IQVL--ERCKHGFHSQCIQKWLYS---H--------YSCPICRCNCLFS 123 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~-~-~~~l--~~C~H~fh~~Ci~~wl~~---~--------~~CP~Cr~~~~~~ 123 (135)
+.+|.||++.+.+++ . ..+. +.|+..||..|+..||.. . ..||.|+.++..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999999876332 2 2222 369999999999999942 1 1499999987654
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.57 E-value=4.7e-08 Score=57.78 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=37.7
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 123 (135)
++..|+|+.+-|.++ .+++ +||.|...+|..|+.. +.+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 457899999999887 4566 9999999999999977 78899999887754
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.2e-08 Score=72.16 Aligned_cols=44 Identities=39% Similarity=0.841 Sum_probs=38.8
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
.+...|+||++.|..+ .+++ |||.||..|+..++.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 4668999999999988 6777 999999999999988556799999
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.51 E-value=4.8e-08 Score=74.35 Aligned_cols=48 Identities=33% Similarity=0.826 Sum_probs=38.2
Q ss_pred CccccccccccccCCC-eEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGD-VIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+-.+|+||||.++... .+.... |.|.||..|+..|. ..+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 4578999999997654 334444 99999999999995 468999997655
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.51 E-value=4.4e-08 Score=71.00 Aligned_cols=49 Identities=31% Similarity=0.552 Sum_probs=41.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.-..|-||-+.|..+ .++.|||.||.-||...|..+..||+||.+..+.
T Consensus 24 s~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 346799999998775 4445999999999999999999999999876654
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2e-08 Score=74.41 Aligned_cols=58 Identities=28% Similarity=0.496 Sum_probs=48.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCCCCCCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFSPTSTPTS 130 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~~~~~~~~ 130 (135)
..+..|+|||+-+... ++.+.|.|-||.+||..-+ ..+..||.||+.+..+....+.|
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCc
Confidence 4567899999998664 4555799999999999888 45678999999999988877765
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.47 E-value=3.8e-08 Score=80.73 Aligned_cols=52 Identities=33% Similarity=0.793 Sum_probs=38.1
Q ss_pred CCccccccccccccCCC-e--EEEcCCCCCcccHHHHHHHHh--cCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGD-V--IQVLERCKHGFHSQCIQKWLY--SHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~-~--~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~~ 121 (135)
++-++|+||+..+..-+ . -...+.|.|.||..|+..|+. .+.+||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34578999999876211 1 123345899999999999994 4567999997764
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-07 Score=70.53 Aligned_cols=55 Identities=36% Similarity=0.804 Sum_probs=41.8
Q ss_pred CCccccccccccccCCC----eEEEcCCCCCcccHHHHHHHH--hc-----CCCcccccccccCCC
Q 047778 70 GAEAECVICLSEFVEGD----VIQVLERCKHGFHSQCIQKWL--YS-----HYSCPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl--~~-----~~~CP~Cr~~~~~~~ 124 (135)
..+.+|.||++...+.. ....+|+|.|.||..||..|- .+ .+.||.||.......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 44789999999875532 134567899999999999997 33 467999998765543
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.3e-07 Score=68.94 Aligned_cols=50 Identities=40% Similarity=0.707 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
++..+|.|||++-.+ +.+|| |.|. .|..|.+..--....||+||+++...
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 446789999999544 57898 9995 99999999766778899999988654
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.36 E-value=6.4e-08 Score=54.95 Aligned_cols=48 Identities=29% Similarity=0.655 Sum_probs=24.6
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
-..|++|.+-+..+ ..+..|.|+||..||..-+. ..||+|+.+.....
T Consensus 7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 35799999998775 33456999999999988654 45999998876543
No 44
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.5e-07 Score=69.46 Aligned_cols=49 Identities=31% Similarity=0.800 Sum_probs=35.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC---CCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH---YSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~ 121 (135)
..|.||.+-+.....+...-.|||+||..|+.+|+..- ..||+|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 47999955444444454444599999999999999542 46999984433
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.6e-07 Score=51.37 Aligned_cols=46 Identities=35% Similarity=0.640 Sum_probs=35.1
Q ss_pred ccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHh-cCCCccccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLY-SHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~-~~~~CP~Cr~~~~ 121 (135)
+++|.||+|.-.+. ++-.|||. .|.+|-.+-++ .+..||+||.++.
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 37999999986553 33349996 88999776654 6778999999874
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.6e-07 Score=67.29 Aligned_cols=48 Identities=38% Similarity=0.839 Sum_probs=37.0
Q ss_pred ccccccccccccCC-CeEEEcCCCCCcccHHHHHHHHhc--CCCccccccc
Q 047778 72 EAECVICLSEFVEG-DVIQVLERCKHGFHSQCIQKWLYS--HYSCPICRCN 119 (135)
Q Consensus 72 ~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~ 119 (135)
...|+||++.+... +.-.+.+.|||.|..+||+.|+.+ ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 46899999999754 444445569999999999999952 2359999754
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=7.7e-07 Score=64.85 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=42.6
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccCCCCCCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFSPTSTPT 129 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~ 129 (135)
..+|+||+....-+ ..++ |+|.||.-||..-..+ ..+|++||.++....-..++
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ps 61 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPS 61 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcchh
Confidence 57999999986554 4565 9999999999887754 45699999999877655544
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.12 E-value=4.8e-07 Score=73.20 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=42.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
..|++|+..+.++......+ |+|.||..||..|-+...+||+||..+....
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 45888888887766555565 9999999999999999999999998765443
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.2e-06 Score=70.66 Aligned_cols=47 Identities=23% Similarity=0.668 Sum_probs=38.3
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFS 123 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 123 (135)
..|+.|-..+.+- +++.|||+||..|+...+ .+...||.|-..+...
T Consensus 644 LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4699999887763 555699999999999998 5667899998877544
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.02 E-value=2.9e-06 Score=61.90 Aligned_cols=54 Identities=30% Similarity=0.728 Sum_probs=43.8
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-----------------------CCCcccccccccCCCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-----------------------HYSCPICRCNCLFSPT 125 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----------------------~~~CP~Cr~~~~~~~~ 125 (135)
....|.|||.-|.+++.+.+.+ |.|.||..|+..+|.. ...||+||..+.....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 3467999999999999888888 9999999999887731 1249999998776543
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.8e-06 Score=63.72 Aligned_cols=53 Identities=28% Similarity=0.622 Sum_probs=43.8
Q ss_pred CCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 68 LTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 68 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
....+.+|.||+.-+..+ .++| |||.||..||+.-+..+..||.||..+....
T Consensus 80 ~~~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVELP 132 (398)
T ss_pred cccchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCcccccccccch
Confidence 335678999999988776 4556 9999999999998887788999999888643
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.00 E-value=2.2e-06 Score=64.82 Aligned_cols=50 Identities=24% Similarity=0.676 Sum_probs=39.3
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHh--cCCCcccccccccCCCCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY--SHYSCPICRCNCLFSPTS 126 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~~~~~ 126 (135)
..|-||-|. +..+..-| |||..|..|+..|-. ...+||.||..+....+.
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 359999887 34467777 999999999999972 256899999988765544
No 53
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1e-05 Score=56.97 Aligned_cols=56 Identities=23% Similarity=0.616 Sum_probs=45.8
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc--------CCCcccccccccCCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS--------HYSCPICRCNCLFSPTS 126 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~~~~~~~~ 126 (135)
++....|.+|-..+..++.+++. |-|+||++|+..|-.+ ...||.|...+....-.
T Consensus 47 sDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred cCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 45567899999999999999876 9999999999999732 23599999988766543
No 54
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.88 E-value=9.2e-06 Score=69.82 Aligned_cols=64 Identities=28% Similarity=0.598 Sum_probs=46.8
Q ss_pred cceeeecCccCCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC----------CcccccccccC
Q 047778 58 TLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY----------SCPICRCNCLF 122 (135)
Q Consensus 58 ~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----------~CP~Cr~~~~~ 122 (135)
|-...+++....+.++.|.||+.+--.....+.|. |+|+||..|...-|.+.. +||+|+.+++.
T Consensus 3472 PCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3472 PCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 33444444455567889999998865555566776 999999999987665432 59999998764
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.83 E-value=1.1e-05 Score=62.04 Aligned_cols=53 Identities=26% Similarity=0.566 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
..++..|++|+..+.++-.. . .|||.||..|+..|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhh
Confidence 45668899999999887221 2 49999999999999988899999988776544
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.82 E-value=1.2e-05 Score=45.17 Aligned_cols=42 Identities=24% Similarity=0.638 Sum_probs=27.2
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc--CCCccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS--HYSCPI 115 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~ 115 (135)
....|+|.+..|.++ ++.. .|||+|-.+.|..|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 357899999999876 4444 49999999999999943 345998
No 57
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.73 E-value=1.3e-05 Score=52.29 Aligned_cols=35 Identities=23% Similarity=0.566 Sum_probs=29.6
Q ss_pred ccccccccccccCCCeEEEcCCCC------CcccHHHHHHHH
Q 047778 72 EAECVICLSEFVEGDVIQVLERCK------HGFHSQCIQKWL 107 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~------H~fh~~Ci~~wl 107 (135)
..+|.||++.+.+.+.+..++ || |.||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 578999999998866677777 76 789999999994
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.69 E-value=1e-05 Score=59.75 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=43.7
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
....+|.+|-..|.+.. +.+.|-|.||..||...|..+..||+|...+....+
T Consensus 13 n~~itC~LC~GYliDAT---TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT---TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ccceehhhccceeecch---hHHHHHHHHHHHHHHHHHHHhccCCccceeccCccc
Confidence 45678999999998863 333599999999999999989999999887776543
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.67 E-value=1.9e-05 Score=59.71 Aligned_cols=46 Identities=37% Similarity=0.728 Sum_probs=38.1
Q ss_pred cccccccccccc-CCCeEEEcCCCCCcccHHHHHHHHhcCC--Ccccccc
Q 047778 72 EAECVICLSEFV-EGDVIQVLERCKHGFHSQCIQKWLYSHY--SCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~ 118 (135)
+..|..|-+.+. .++.+..+| |.|+||..|+...|.++. +||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456999999885 356788898 999999999999996554 6999983
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.65 E-value=4.1e-05 Score=41.21 Aligned_cols=45 Identities=27% Similarity=0.466 Sum_probs=22.6
Q ss_pred cccccccccCCC-eEEEcCCCCCcccHHHHHHHHh-cCCCcccccccc
Q 047778 75 CVICLSEFVEGD-VIQVLERCKHGFHSQCIQKWLY-SHYSCPICRCNC 120 (135)
Q Consensus 75 C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~ 120 (135)
|++|.+++...+ .+.-- .||+.++..|...-+. .+..||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 33334 4999999999888775 467899999875
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.58 E-value=2.7e-05 Score=53.90 Aligned_cols=45 Identities=24% Similarity=0.534 Sum_probs=37.6
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|.||-++|..+ +.+.|||.||..|...-++....|-+|-....
T Consensus 197 F~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4799999999886 44459999999999998888889999976544
No 62
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.50 E-value=8.8e-05 Score=55.46 Aligned_cols=68 Identities=21% Similarity=0.411 Sum_probs=48.7
Q ss_pred HHHHhhCcceeeecCccCCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHH--HhcCCCcccccccccC
Q 047778 51 AEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW--LYSHYSCPICRCNCLF 122 (135)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w--l~~~~~CP~Cr~~~~~ 122 (135)
+..+...|..+....++..++...|-||-+.+.- +.++| |+|..|--|.... |...+.||+||.....
T Consensus 40 KNnlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 40 KNNLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3344445555555555666677889999988644 46777 9999999998654 4667889999986543
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=1.9e-05 Score=58.98 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=33.5
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...+.|.||+++..+ ...+| |||+-| |..-.. ...+||+||+.+..
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 345789999999765 46777 999866 665542 34569999987653
No 64
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.37 E-value=0.0001 Score=60.52 Aligned_cols=50 Identities=32% Similarity=0.763 Sum_probs=38.2
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-------CCCcccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-------HYSCPICRCNC 120 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~ 120 (135)
+..+|.||++.+.....+-....|-|+||..||..|-.. ...||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 456799999999876655444459999999999999842 23599997443
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.34 E-value=0.0002 Score=47.95 Aligned_cols=54 Identities=26% Similarity=0.585 Sum_probs=38.0
Q ss_pred CCCccccccccccccCCCeEEEcC-CCCC---cccHHHHHHHHhc--CCCcccccccccCCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLE-RCKH---GFHSQCIQKWLYS--HYSCPICRCNCLFSPTS 126 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~-~C~H---~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~~~ 126 (135)
...+..|-||.++-.+ . ..| .|.. ..|.+|+..|+.. ..+|++|+.++......
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~ 64 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNY 64 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEec
Confidence 3456799999988432 2 234 2444 5799999999943 45699999988766433
No 66
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00032 Score=50.83 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=38.6
Q ss_pred CCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh--cCCCcccccccccC
Q 047778 68 LTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY--SHYSCPICRCNCLF 122 (135)
Q Consensus 68 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 122 (135)
..+.+.+|++|-+.-..+ .... .|||+||.-||..-+. .+.+||.|-.++..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCC--eeec-cccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 345678999999885544 2233 4999999999988763 44689999887763
No 67
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00086 Score=49.81 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=37.7
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCN 119 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 119 (135)
......|++|+....++..+ .--|-+||..||..++.+...||+=-.+
T Consensus 297 ~~~~~~CpvClk~r~Nptvl---~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVL---EVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCCceE---EecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34567899999998776333 2269999999999999999999985443
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00019 Score=54.70 Aligned_cols=47 Identities=26% Similarity=0.700 Sum_probs=37.7
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc--------CCCccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS--------HYSCPICRCN 119 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~ 119 (135)
-..|.||+++.........+| |+|+||..|...++.. ...||-++..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 467999999987767888888 9999999999999832 2248877654
No 69
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00023 Score=53.36 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
.++..|+||...-.. ....| |+|.-|..||.+-+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~---Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN---AVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccch---hhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467789999886333 34555 99999999999999999999999987763
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.20 E-value=0.00014 Score=45.64 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=26.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQ 104 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 104 (135)
+++..|++|-..+.. ....+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 445789999999977 4566777 99999999975
No 71
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.20 E-value=0.00029 Score=37.93 Aligned_cols=40 Identities=30% Similarity=0.837 Sum_probs=26.3
Q ss_pred cccccccccCCCeEEEcCCCC--C---cccHHHHHHHHh--cCCCcccc
Q 047778 75 CVICLSEFVEGDVIQVLERCK--H---GFHSQCIQKWLY--SHYSCPIC 116 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~--~~~~CP~C 116 (135)
|-||++.-...+ ..+.| |+ = ..|.+|+..|+. ++.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999876655 33455 54 3 689999999995 45669887
No 72
>PHA02862 5L protein; Provisional
Probab=97.20 E-value=0.00026 Score=46.64 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=34.9
Q ss_pred cccccccccccCCCeEEEcCCCC-----CcccHHHHHHHHhc--CCCcccccccccCCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCK-----HGFHSQCIQKWLYS--HYSCPICRCNCLFSP 124 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 124 (135)
+.|-||+++-++. ..| |. -.-|.+|+.+|++. +..|++|+.++..+.
T Consensus 3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 5799999985332 344 54 46999999999943 456999999876543
No 73
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00012 Score=49.14 Aligned_cols=30 Identities=40% Similarity=0.821 Sum_probs=26.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHS 100 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~ 100 (135)
.+..+|.||||++..++.+..|| |-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 44568999999999999999999 9999986
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00026 Score=51.75 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=39.4
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
+.|-||...|..+ +.+.|+|.||..|...-++....|.+|-+.+...
T Consensus 242 f~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccc----hhhcCCceeehhhhccccccCCcceecccccccc
Confidence 4599999999887 4445999999999999888888999998776543
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.09 E-value=0.00023 Score=56.03 Aligned_cols=49 Identities=24% Similarity=0.634 Sum_probs=37.0
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-----hcCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-----YSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~~~ 122 (135)
.++.+|.+|.++-++. .... |.|.||.-||..+. ..+-+||+|-..+..
T Consensus 534 k~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 4567899999986553 3444 99999999998887 234679999765543
No 76
>PHA03096 p28-like protein; Provisional
Probab=97.07 E-value=0.00029 Score=51.87 Aligned_cols=36 Identities=31% Similarity=0.652 Sum_probs=29.1
Q ss_pred cccccccccccCC----CeEEEcCCCCCcccHHHHHHHHh
Q 047778 73 AECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLY 108 (135)
Q Consensus 73 ~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~ 108 (135)
..|.||++..... ..-..|+.|.|.||..|+..|-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 6899999986542 23457788999999999999984
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0011 Score=47.59 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=45.5
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
...|++|.+.+.+.-...+|..|||+|+.+|+...+..-..||+|-.++.+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 35699999999988777777789999999999999888889999988776653
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.87 E-value=0.00079 Score=50.35 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=37.9
Q ss_pred CCccccccccccccCCCe-EEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDV-IQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 123 (135)
++++.|++|+|+++..+. ..-.+ ||-..|.-|+..-- .-+..||-||..+.+.
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 455679999999987654 33454 99888888865543 2356799999877654
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.84 E-value=0.00063 Score=37.53 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=33.0
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
...|-.|...-.. -.++| |||+.+..|.+.+ +-+.||+|-.++...
T Consensus 7 ~~~~~~~~~~~~~---~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK---GTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc---ccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 3456666555323 35777 9999999998875 556799998887654
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00022 Score=52.12 Aligned_cols=42 Identities=31% Similarity=0.660 Sum_probs=31.7
Q ss_pred ccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCccccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+..|+|||+.- .....|+ |||. -|..|-... ..||+||+-+.
T Consensus 300 ~~LC~ICmDaP---~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC---cceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 66799999984 4457887 9994 788885543 47999998654
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00065 Score=48.43 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCC
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTST 127 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (135)
.|--|.---. ++...++. |+|+||..|...-. ...||+||.++-...-..
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeeeeeccc
Confidence 4666655433 55665555 99999999987632 238999999865544433
No 82
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=96.69 E-value=0.0028 Score=34.92 Aligned_cols=41 Identities=29% Similarity=0.642 Sum_probs=33.2
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPI 115 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~ 115 (135)
....|.+|-+.|.+++.+.+.|.||-.+|.+|.+. ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 45689999999998888888889999999999654 345544
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0014 Score=44.83 Aligned_cols=32 Identities=28% Similarity=0.737 Sum_probs=25.7
Q ss_pred CCCCcccHHHHHHHHhcC-----------CCcccccccccCCC
Q 047778 93 RCKHGFHSQCIQKWLYSH-----------YSCPICRCNCLFSP 124 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~~ 124 (135)
.||.-||.-|+..||+.- ..||.|..++..+.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 499999999999999431 14999998887654
No 84
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.65 E-value=0.0011 Score=34.91 Aligned_cols=41 Identities=24% Similarity=0.683 Sum_probs=22.7
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC--Ccccc
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY--SCPIC 116 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~C 116 (135)
|.+|.+-...|...... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777777666433322 3888999999999996555 69987
No 85
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.63 E-value=0.0034 Score=45.82 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
......|||...+|........+-.|||+|...++... .....||+|-.++....
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence 34567899999999655555555459999999999996 33567999988877543
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0015 Score=48.29 Aligned_cols=47 Identities=34% Similarity=0.759 Sum_probs=37.6
Q ss_pred cccccccccccCCC---eEEEcCCCCCcccHHHHHHHHhcCC-Ccccccccc
Q 047778 73 AECVICLSEFVEGD---VIQVLERCKHGFHSQCIQKWLYSHY-SCPICRCNC 120 (135)
Q Consensus 73 ~~C~ICl~~~~~~~---~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~ 120 (135)
..|-||-++|...+ ..+.+. |||.|+..|+...+.+.. .||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998753 345565 999999999999875443 599999986
No 87
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.58 E-value=0.0016 Score=48.01 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=33.3
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-cCCCcccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-SHYSCPICRC 118 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~ 118 (135)
..|+.|..-+.++ ...+.|+|.||.+||..-|. .-..||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 5699998887665 23356999999999998774 4457999944
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.12 E-value=0.0026 Score=46.59 Aligned_cols=46 Identities=35% Similarity=0.739 Sum_probs=37.6
Q ss_pred ccccccccccccCCC-eEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 72 EAECVICLSEFVEGD-VIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
...|+||.+.+.... .+..++ |||..|..|+......+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 345999999887655 345666 9999999999998866689999987
No 89
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.93 E-value=0.0085 Score=40.23 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=21.6
Q ss_pred ccccccccccccCCCeEEEcC------C-----CCC-cccHHHHHHHH
Q 047778 72 EAECVICLSEFVEGDVIQVLE------R-----CKH-GFHSQCIQKWL 107 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~------~-----C~H-~fh~~Ci~~wl 107 (135)
+..|+||||--.+. .+|- + |+- .-|.+|++++-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 56899999985553 2222 1 332 36889999985
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.0039 Score=51.64 Aligned_cols=41 Identities=24% Similarity=0.570 Sum_probs=32.1
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
...|..|-..++-+ .+.-.|||.||.+|+. .+...||-|+.
T Consensus 840 ~skCs~C~~~LdlP---~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP---FVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccc---eeeeecccHHHHHhhc---cCcccCCccch
Confidence 46899999988765 2322499999999998 35567999986
No 91
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.0054 Score=51.01 Aligned_cols=36 Identities=22% Similarity=0.561 Sum_probs=28.2
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
+.++.|.+|.-.+... ...+.| |||.||.+|+..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 5678999999987653 444666 99999999997654
No 92
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.015 Score=42.74 Aligned_cols=52 Identities=17% Similarity=0.500 Sum_probs=36.6
Q ss_pred cccccccc-ccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccCCCC
Q 047778 74 ECVICLSE-FVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFSPT 125 (135)
Q Consensus 74 ~C~ICl~~-~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (135)
.|++|-.. |.+++...+...|+|..|.+|++.-+.. ...||.|-..+-...-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 58888775 4455544333359999999999999854 4569999766544433
No 93
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.0097 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.834 Sum_probs=21.5
Q ss_pred CCCCcccHHHHHHHHhcCCCccc
Q 047778 93 RCKHGFHSQCIQKWLYSHYSCPI 115 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~CP~ 115 (135)
.|+|+.|.+|...|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999999999997
No 94
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.23 E-value=0.005 Score=50.52 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=36.5
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc--CCCcccccccccCCCCCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS--HYSCPICRCNCLFSPTST 127 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~~~~ 127 (135)
..|.||++ . +...... |+|.||.+|+..-+.. ...||.||..+.......
T Consensus 455 ~~c~ic~~-~---~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-c---ccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 68999999 2 3334444 9999999999988743 235999998776654433
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.15 E-value=0.007 Score=52.23 Aligned_cols=45 Identities=33% Similarity=0.727 Sum_probs=37.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNC 120 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (135)
..|.||++.+.+...+. .|||.+|..|+..|+..+..||+|+...
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 47999999987533232 3999999999999999999999998543
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.12 E-value=0.02 Score=37.05 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
|++++.++++++++.|+++|++.+
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567777888888887777776655
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.11 E-value=0.0079 Score=43.09 Aligned_cols=48 Identities=23% Similarity=0.629 Sum_probs=36.0
Q ss_pred Ccccccccccc-ccCCC-eEEEcCCCCCcccHHHHHHHHhcCC-Ccc--cccc
Q 047778 71 AEAECVICLSE-FVEGD-VIQVLERCKHGFHSQCIQKWLYSHY-SCP--ICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~-~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP--~Cr~ 118 (135)
.+..||||..+ |-+++ .+.+.|.|-|..|.+|++.-|.... .|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45689999876 44555 4455667999999999999996554 599 6744
No 98
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=95.06 E-value=0.028 Score=36.72 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047778 2 FCALTCALALNTAIRCFL 19 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~ 19 (135)
|++++++++|++++.+++
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 333433333333333333
No 99
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.0011 Score=50.36 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=40.4
Q ss_pred ccccccccccccCC-CeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 72 EAECVICLSEFVEG-DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
...|+||.+.+... +.+..+- |||.+|.+|+..||.....||.|+..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 45799999998765 4555554 9999999999999988788999998764
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.0072 Score=48.85 Aligned_cols=43 Identities=33% Similarity=0.618 Sum_probs=32.9
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
..|.||+..|......-+...|||..|..|+..-. +.+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 46999999988765444555699999999998854 46888 544
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.86 E-value=0.012 Score=31.38 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=21.7
Q ss_pred CC-CcccHHHHHHHHhcCCCcccccccccCC
Q 047778 94 CK-HGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 94 C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
|+ |..|..|+...+.++..||+|..++..+
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 75 9999999999999999999999887653
No 102
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.73 E-value=0.028 Score=36.66 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=39.0
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh---cCCCcccccccccCCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY---SHYSCPICRCNCLFSP 124 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~~ 124 (135)
.-.+|-||.|.-.+..-+.--.-||-..|.-|....|+ ....||+|+.++-.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 44689999998655433333335999999999887764 3557999998877654
No 103
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.016 Score=43.07 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=29.1
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
.|--|--.+. ..-++.| |.|+||.+|... ..-+.||.|-..+.
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 3666644432 2236777 999999999765 33467999976554
No 104
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.024 Score=40.07 Aligned_cols=41 Identities=29% Similarity=0.618 Sum_probs=31.1
Q ss_pred cccccccccCCCeEEEcCCCCC-cccHHHHHHHHhcCCCcccccccccCC
Q 047778 75 CVICLSEFVEGDVIQVLERCKH-GFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
|-.|-+. +..|.++| |.| .+|..|-.. -..||+|+......
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhce
Confidence 7788776 66788898 998 589999654 35699998876543
No 105
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=0.026 Score=40.84 Aligned_cols=53 Identities=25% Similarity=0.661 Sum_probs=36.3
Q ss_pred CCCccccccccccccCCCeE-EEcCCCC-----CcccHHHHHHHHhcCC--------CcccccccccC
Q 047778 69 TGAEAECVICLSEFVEGDVI-QVLERCK-----HGFHSQCIQKWLYSHY--------SCPICRCNCLF 122 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~-~~l~~C~-----H~fh~~Ci~~wl~~~~--------~CP~Cr~~~~~ 122 (135)
.+.+..|=||+..=++...- -+-| |. |..|..|+..|+..+. +||.|+..+.-
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 35567899999985554322 2344 53 7899999999993221 49999886653
No 106
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.97 E-value=0.033 Score=41.28 Aligned_cols=52 Identities=25% Similarity=0.598 Sum_probs=36.8
Q ss_pred ccccccccccccCCCe-EEEcCCCC-----CcccHHHHHHHHh--cCCCcccccccccCCC
Q 047778 72 EAECVICLSEFVEGDV-IQVLERCK-----HGFHSQCIQKWLY--SHYSCPICRCNCLFSP 124 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~-~~~l~~C~-----H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~~~ 124 (135)
+..|-||+++...... ....| |. ...|..|+..|+. ++..|.+|........
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~ 137 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG 137 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence 4689999998654321 23444 65 4589999999995 5667999988665543
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.028 Score=43.34 Aligned_cols=37 Identities=35% Similarity=0.791 Sum_probs=27.6
Q ss_pred CccccccccccccCC-CeEEEcCCCCCcccHHHHHHHHh
Q 047778 71 AEAECVICLSEFVEG-DVIQVLERCKHGFHSQCIQKWLY 108 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~ 108 (135)
...+|.||+.+.... +...+. .|+|.||.+|+.+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhh
Confidence 457899999555444 344434 5999999999999885
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.13 E-value=0.1 Score=43.56 Aligned_cols=57 Identities=23% Similarity=0.644 Sum_probs=39.9
Q ss_pred cCCCCccccccccccccCCCeEEEcC-CCC---CcccHHHHHHHHhcC--CCcccccccccCCC
Q 047778 67 KLTGAEAECVICLSEFVEGDVIQVLE-RCK---HGFHSQCIQKWLYSH--YSCPICRCNCLFSP 124 (135)
Q Consensus 67 ~~~~~~~~C~ICl~~~~~~~~~~~l~-~C~---H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 124 (135)
...+++..|-||..+=..++.+ .-| +|. -..|.+|+..|+.-+ ..|-+|+.++..+.
T Consensus 7 ~mN~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCCccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3456678999999886554443 344 233 249999999999544 45999998877654
No 109
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.084 Score=40.44 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=36.6
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC---Cccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY---SCPICRCN 119 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~ 119 (135)
...|||=.+.-.+......+. |||+...+-+....++.. .||.|=..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 467999888776666677887 999999999999775443 59999433
No 110
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.01 E-value=0.076 Score=39.60 Aligned_cols=44 Identities=25% Similarity=0.560 Sum_probs=34.1
Q ss_pred CCccccccccccccCCCeEEEcCCC--CCcccHHHHHHHHhcCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERC--KHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C--~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
.+-.+||||.+.+..+ ... | ||..|..|-.. ....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----cee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 3457899999999886 232 6 69999999664 4568999998876
No 111
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.54 E-value=0.079 Score=40.41 Aligned_cols=27 Identities=30% Similarity=0.822 Sum_probs=20.0
Q ss_pred CCcccHHHHHHHHhc-------------CCCccccccccc
Q 047778 95 KHGFHSQCIQKWLYS-------------HYSCPICRCNCL 121 (135)
Q Consensus 95 ~H~fh~~Ci~~wl~~-------------~~~CP~Cr~~~~ 121 (135)
.-..|.+|+.+|+.. +-.||+||+...
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 345789999999832 235999999764
No 112
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.16 E-value=0.097 Score=40.82 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=28.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
+++..|+||..-|.++ +.|| |+|..|..|...-+
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhc
Confidence 4567899999999887 7888 99999999988655
No 113
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=91.71 E-value=0.18 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=21.6
Q ss_pred cccccccccCC------CeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 75 CVICLSEFVEG------DVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 75 C~ICl~~~~~~------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
|--|+..|..+ ...-.-+.|++.||.+|=.---..=..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 44566666554 23456678999999999543223334699884
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.16 Score=39.92 Aligned_cols=37 Identities=27% Similarity=0.597 Sum_probs=29.6
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS 109 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 109 (135)
.....|.||.+.+.. .+..+. |||.|+..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 456789999999866 344554 9999999999999843
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=0.15 Score=37.68 Aligned_cols=29 Identities=24% Similarity=0.675 Sum_probs=22.0
Q ss_pred CCCcccHHHHHHHHh-------------cCCCcccccccccC
Q 047778 94 CKHGFHSQCIQKWLY-------------SHYSCPICRCNCLF 122 (135)
Q Consensus 94 C~H~fh~~Ci~~wl~-------------~~~~CP~Cr~~~~~ 122 (135)
|.-..|.+|+.+|+. ++.+||+||++...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 556789999999983 23469999997653
No 116
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.60 E-value=0.13 Score=23.97 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=13.7
Q ss_pred ccccccccccCCCeEEEcCCCCCcc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGF 98 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~f 98 (135)
.|+-|-..+.. .....|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 46667666532 344555677776
No 117
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.79 E-value=0.54 Score=35.37 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=39.2
Q ss_pred cccccccccccCCCeE-EEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCCC
Q 047778 73 AECVICLSEFVEGDVI-QVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTSTP 128 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 128 (135)
..|+||.+.....+.. .-. .|++..|..|...-...+.+||.||.+........+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~-~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s~ 305 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPC-PCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKSE 305 (327)
T ss_pred CCCCCCCCcccccccccccc-cccccchhhhhhcccccCCCCCccCCccccCccccc
Confidence 6799999987544332 223 488888888888777778899999977665544333
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=88.72 E-value=0.35 Score=33.99 Aligned_cols=40 Identities=40% Similarity=0.791 Sum_probs=29.1
Q ss_pred cccccccccc-----ccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 72 EAECVICLSE-----FVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 72 ~~~C~ICl~~-----~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
...|-+|-++ |+. +.+...+.|+-+||..|... ..||-|.
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4678888753 333 35667778999999999662 6799994
No 120
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.61 E-value=0.31 Score=40.79 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=34.5
Q ss_pred ccccccccccccCCC---eEEEcCCCCCcccHHHHHHHHhc------CCCcccccccccC
Q 047778 72 EAECVICLSEFVEGD---VIQVLERCKHGFHSQCIQKWLYS------HYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~---~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 122 (135)
.+.|.+|.-++.+++ .+-.+..|+|.||..||..|..+ .-.|++|...+..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 456888877776622 22233359999999999999832 2348888776543
No 121
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.58 E-value=0.12 Score=42.39 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=36.3
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc---CCCcccccccccCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS---HYSCPICRCNCLFS 123 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~~~ 123 (135)
..+|+||+..+..+ ..+ .|.|.|+..|+..-|.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46899999999886 344 49999999998776633 34599998665543
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.46 E-value=0.64 Score=25.13 Aligned_cols=43 Identities=21% Similarity=0.517 Sum_probs=18.1
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHH---h--cCCCccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL---Y--SHYSCPICRCN 119 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~--~~~~CP~Cr~~ 119 (135)
..|+|-...+..+ ++... |.|.-|.+ +..|+ . ....||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688888887654 55554 99974322 23344 2 23359999763
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.90 E-value=0.57 Score=38.97 Aligned_cols=40 Identities=23% Similarity=0.564 Sum_probs=29.5
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPI 115 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~ 115 (135)
.|.+|-..+.. .....+.|||.-|.+|+..|+..+..||.
T Consensus 781 ~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 58888666532 22234469999999999999988777766
No 124
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=0.76 Score=33.41 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=38.9
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
...|+|=--+|........+-.|||+|-..-+.+. ...+|++|-..+.+...
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 45699987777665555555569999999888774 46789999988876643
No 125
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.26 E-value=0.68 Score=29.50 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=34.0
Q ss_pred ccccccccccccCCC----------eEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 72 EAECVICLSEFVEGD----------VIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~----------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
...|--|+..|..+. ..-.-+.|++.||.+|-.-+-..=..||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 356999999886431 1233567999999999877766666799995
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.38 Score=37.21 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=32.5
Q ss_pred cccccccccccCCC--eEEEcCCCCCcccHHHHHHHHhcCCCcccc
Q 047778 73 AECVICLSEFVEGD--VIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116 (135)
Q Consensus 73 ~~C~ICl~~~~~~~--~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 116 (135)
..|+.|.-.++..+ ...... |||.||..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 57999988765433 445565 99999999999998777766554
No 127
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.74 E-value=0.26 Score=39.92 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=27.4
Q ss_pred Ccccccccccc-----ccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 71 AEAECVICLSE-----FVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 71 ~~~~C~ICl~~-----~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
....|.+|... |. .+.++....|+++||..|+.. .+..||-|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34668888332 32 233444445999999999655 445599993
No 128
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=86.14 E-value=0.45 Score=33.63 Aligned_cols=44 Identities=27% Similarity=0.648 Sum_probs=34.3
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
-..|.+|.+-...+ +....||=.+|..|+..++.+...||.|-.
T Consensus 181 lk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 35699999876554 333347788999999999999889999943
No 129
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=86.06 E-value=1.4 Score=26.15 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=22.2
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCCCC
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~~~ 125 (135)
+...|-||-++.. +++.....-.|+--.|..|++-=. ..++.||.|+..+.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 4568999999864 344333333577788999987655 456679999987765443
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=85.97 E-value=0.42 Score=25.53 Aligned_cols=44 Identities=20% Similarity=0.513 Sum_probs=29.5
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHh------cCCCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY------SHYSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~ 118 (135)
.|.||...... +.+..-..|+..||..|+..-.. ....||.|+.
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 37899884444 34445556999999999865432 2456888863
No 131
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=85.96 E-value=0.37 Score=27.60 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
.+...|.+|...|..-..-..-..||++||.+|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34578999999996543333444699999999986544
No 132
>PF12669 P12: Virus attachment protein p12 family
Probab=85.87 E-value=1.3 Score=24.81 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=4.7
Q ss_pred HHHHHhhcC
Q 047778 15 IRCFLRDNN 23 (135)
Q Consensus 15 ~~~~~~~~~ 23 (135)
+|.+++.++
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 466665443
No 133
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=0.47 Score=38.30 Aligned_cols=48 Identities=29% Similarity=0.785 Sum_probs=37.6
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
+..+.|.||+.++ ..+..+ |. |..|+..|+..+..||+|+..+.....
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 4567899999998 234444 77 999999999999999999887665543
No 134
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=0.39 Score=40.02 Aligned_cols=43 Identities=26% Similarity=0.600 Sum_probs=30.9
Q ss_pred ccccccccccccCC----CeEEEcCCCCCcccHHHHHHHHhcCCCcccc
Q 047778 72 EAECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116 (135)
Q Consensus 72 ~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 116 (135)
+..|.-|.+..... +.+.++- |||+||..|+..-..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 45799999986532 3566776 999999999987765444 4444
No 135
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=83.31 E-value=0.85 Score=22.95 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=15.3
Q ss_pred ccccccccccCCCe-------EEEcCCCCCccc
Q 047778 74 ECVICLSEFVEGDV-------IQVLERCKHGFH 99 (135)
Q Consensus 74 ~C~ICl~~~~~~~~-------~~~l~~C~H~fh 99 (135)
.|+=|...|..++. -...+.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777754332 234445777774
No 136
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=82.65 E-value=1.1 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=24.9
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
..|.+|-..|..-..-.....||++|+.+|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57899988886533222333599999999987664
No 137
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=82.55 E-value=1.7 Score=21.24 Aligned_cols=37 Identities=19% Similarity=0.498 Sum_probs=23.7
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
|..|-+.+...+..... =+..||.+| ..|..|...+.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 77788887665333222 467888877 46777766553
No 138
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=82.51 E-value=1.3 Score=24.08 Aligned_cols=39 Identities=15% Similarity=0.410 Sum_probs=20.8
Q ss_pred cccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
|.-|-..+...+.+... -|..||.+| ..|-.|+..+...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 45566666544433222 556666655 4566666655443
No 139
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=82.06 E-value=1.9 Score=26.20 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc
Q 047778 4 ALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
.++|++.+++.+.|...|++.|
T Consensus 41 ~~iFil~VilwfvCC~kRkrsR 62 (94)
T PF05393_consen 41 CGIFILLVILWFVCCKKRKRSR 62 (94)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 3344444444555555555544
No 140
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=81.67 E-value=0.82 Score=29.74 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 047778 2 FCALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
+++++++|+|+++++.-.||+++
T Consensus 7 iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666666666666654
No 142
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=81.65 E-value=2.3 Score=32.08 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=33.8
Q ss_pred CccccccccccccC---------------CC-eEEEcCCCCCcccHHHHHHHHhc---------CCCcccccccccCC
Q 047778 71 AEAECVICLSEFVE---------------GD-VIQVLERCKHGFHSQCIQKWLYS---------HYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~---------------~~-~~~~l~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~~~~ 123 (135)
.+.+|++|+..=.. +- .-...| |||+--+.-..-|-+. +..||.|-..+...
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 46789999985110 11 112355 9999888888888632 23599998776543
No 143
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=81.35 E-value=1 Score=25.77 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=8.2
Q ss_pred ccHHHHHHHHh
Q 047778 98 FHSQCIQKWLY 108 (135)
Q Consensus 98 fh~~Ci~~wl~ 108 (135)
||.+|+..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 144
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=80.51 E-value=0.44 Score=30.29 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047778 3 CALTCALALNTAIRCFLRDN 22 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~ 22 (135)
++|++++++++++.||+.+|
T Consensus 30 GiL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp S-------------------
T ss_pred eeHHHHHHHHHHHhheeeee
Confidence 34555555555555554433
No 145
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=79.87 E-value=1.2 Score=32.58 Aligned_cols=48 Identities=27% Similarity=0.491 Sum_probs=34.1
Q ss_pred cccccccccccCCCeEEE---cCCCCCcccHHHHHHHHh-c--------CCCcccccccc
Q 047778 73 AECVICLSEFVEGDVIQV---LERCKHGFHSQCIQKWLY-S--------HYSCPICRCNC 120 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~---l~~C~H~fh~~Ci~~wl~-~--------~~~CP~Cr~~~ 120 (135)
.+|-+|.+++...+..+. .+.|+-.+|..|+...+. . ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999999954444433 235888999999998542 1 23599998744
No 146
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=79.72 E-value=1.4 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=16.2
Q ss_pred cccccccccccCCCe-------EEEcCCCCCccc
Q 047778 73 AECVICLSEFVEGDV-------IQVLERCKHGFH 99 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~-------~~~l~~C~H~fh 99 (135)
.+|+=|...|..++. -...+.|||.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 367778777765432 223446888774
No 147
>PLN02189 cellulose synthase
Probab=79.68 E-value=2.9 Score=36.35 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=37.4
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccC
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 122 (135)
....|.||-+++. +|+.......|+--.|..|.+-=- ..+.+||.|+..+.-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3458999999974 455444555588889999995433 446679999988763
No 148
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.18 E-value=1.2 Score=32.91 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=28.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH 110 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~ 110 (135)
....|.+|.|.+++..-|.--.-=+|.||..|-...++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 3467999999998864443111126999999999988653
No 149
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=76.06 E-value=3.3 Score=28.19 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 047778 2 FCALTCALALNTAIRCFLRDN 22 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~ 22 (135)
++++-.++++++++|.|.-++
T Consensus 101 l~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 101 LVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 344444555555555554444
No 150
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.05 E-value=1.2 Score=33.27 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
.....|-||...+..+. ...+|.|.|+..|-..|......||.|+......-.
T Consensus 103 ~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~a 155 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVLA 155 (324)
T ss_pred CCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcCceec
Confidence 44567999999887652 333599999999999999888899999887665443
No 151
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=75.62 E-value=6.1 Score=21.92 Aligned_cols=47 Identities=19% Similarity=0.495 Sum_probs=30.9
Q ss_pred cccccccccccCCCeEEEcCCCCC--cccHHHHHHHHhcCCCcccccccccCC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKH--GFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H--~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
..|-.|-.++..+..-... |.+ .||.+|.+..| +..||.|-..+...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3566666666544311111 543 59999999977 57899998877654
No 152
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=75.35 E-value=3 Score=22.21 Aligned_cols=21 Identities=10% Similarity=-0.025 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 047778 3 CALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~ 23 (135)
+.+++++.++.++.|.+++++
T Consensus 14 ~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHcccc
Confidence 344455555555555554443
No 153
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=74.83 E-value=10 Score=23.17 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=28.3
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|+-|...+.--|.+- |-.|+..+..|..|++++..
T Consensus 33 rS~C~~C~~~L~~~~lIP-------------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIP-------------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccch-------------HHHHHHhCCCCcccCCCCCh
Confidence 468988888876654443 45588888999999988764
No 154
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=4.7 Score=22.73 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 047778 3 CALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
+.+.+.++++.++.+.++..++
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccch
Confidence 3445555555555455444433
No 155
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=0.87 Score=29.95 Aligned_cols=41 Identities=37% Similarity=0.844 Sum_probs=25.1
Q ss_pred CCcccccccccc-ccCCCeEEEcCCCCCc-------ccHHHHHHHH-hcCC---Ccccccc
Q 047778 70 GAEAECVICLSE-FVEGDVIQVLERCKHG-------FHSQCIQKWL-YSHY---SCPICRC 118 (135)
Q Consensus 70 ~~~~~C~ICl~~-~~~~~~~~~l~~C~H~-------fh~~Ci~~wl-~~~~---~CP~Cr~ 118 (135)
+.+..|.||+.. |.+| |||. ||..|-..-- +.++ .|-+|+.
T Consensus 63 ~ddatC~IC~KTKFADG--------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG--------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred CcCcchhhhhhcccccc--------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 567789999975 5555 8875 4455543322 2122 3888875
No 156
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=73.31 E-value=5.5 Score=23.45 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
++++++++..++++||+..--..+
T Consensus 33 FV~~L~~fL~~liVRCfrIllDPY 56 (81)
T PF11057_consen 33 FVGLLCLFLGLLIVRCFRILLDPY 56 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChh
Confidence 567777778888889987655544
No 157
>PF15102 TMEM154: TMEM154 protein family
Probab=72.96 E-value=3.5 Score=27.50 Aligned_cols=6 Identities=33% Similarity=1.160 Sum_probs=2.8
Q ss_pred HHHHHH
Q 047778 102 CIQKWL 107 (135)
Q Consensus 102 Ci~~wl 107 (135)
=++.|.
T Consensus 129 eldkwm 134 (146)
T PF15102_consen 129 ELDKWM 134 (146)
T ss_pred HHHhHH
Confidence 344454
No 158
>PLN02436 cellulose synthase A
Probab=72.55 E-value=5.8 Score=34.72 Aligned_cols=52 Identities=21% Similarity=0.479 Sum_probs=37.1
Q ss_pred Cccccccccccc---cCCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccC
Q 047778 71 AEAECVICLSEF---VEGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~---~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 122 (135)
....|-||-++. .+|+.......|+--.|..|.+-=- ..+.+||.|+..+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 345899999996 3455544444588789999995433 345679999988773
No 159
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.96 E-value=4 Score=29.72 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=27.0
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
+=+-|++||.++.++ ...+ =||+|+.+||.+++
T Consensus 42 ~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCC---ccCC-CCeeeeHHHHHHHH
Confidence 335799999999887 3444 89999999999887
No 160
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=71.46 E-value=7 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=18.7
Q ss_pred CCcccHHHHHHHHhc---------CCCccccccc
Q 047778 95 KHGFHSQCIQKWLYS---------HYSCPICRCN 119 (135)
Q Consensus 95 ~H~fh~~Ci~~wl~~---------~~~CP~Cr~~ 119 (135)
.=.||..|+..++.. +..||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 557999999888732 3459999863
No 161
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=71.29 E-value=4.9 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++++++++++++++.|+++|-.
T Consensus 22 ~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 22 SGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4677788888888888887754
No 162
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=70.95 E-value=2.2 Score=26.60 Aligned_cols=20 Identities=25% Similarity=0.379 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 047778 5 LTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~ 24 (135)
++++++++.++.||+.-|.+
T Consensus 71 ~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 71 FVCILVILYAIYYFVILRER 90 (101)
T ss_pred HHHHHHHHhhheEEEEEecc
Confidence 33344444444444443333
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=70.40 E-value=5 Score=30.43 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=32.1
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
...|-.|.++.......+-- .|.+.||.+|-.---..=..||.|-.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 34599997777665555444 49999999996553343456999963
No 164
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.96 E-value=3.9 Score=30.86 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=31.5
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC---CCccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH---YSCPICR 117 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr 117 (135)
-..||+=-+.-.+......+. |||+.-.+-++..-++. ..||.|=
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 356888666655544556666 99999999998865432 2499993
No 165
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=68.57 E-value=3.3 Score=30.23 Aligned_cols=40 Identities=20% Similarity=0.431 Sum_probs=30.8
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC--Cccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY--SCPI 115 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~ 115 (135)
..|+|=...+.++ .+...|||+|-.+=|...+.... .||+
T Consensus 177 ~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 177 NRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred ccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 4599887777766 34446999999999999986643 4887
No 166
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=68.53 E-value=5.9 Score=18.65 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=10.2
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHH
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCI 103 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci 103 (135)
.|.+|-+.... +..-.-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57788887655 333344459989999885
No 167
>PF15050 SCIMP: SCIMP protein
Probab=68.11 E-value=7.2 Score=25.15 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q 047778 14 AIRCFLRDN 22 (135)
Q Consensus 14 ~~~~~~~~~ 22 (135)
+.|+.+|+-
T Consensus 30 vcR~~lRqG 38 (133)
T PF15050_consen 30 VCRWQLRQG 38 (133)
T ss_pred HHHHHHHcc
Confidence 344444433
No 168
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=67.89 E-value=15 Score=21.14 Aligned_cols=11 Identities=9% Similarity=0.477 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 047778 5 LTCALALNTAI 15 (135)
Q Consensus 5 ~~~~~~l~~~~ 15 (135)
+++++++.+++
T Consensus 9 ~ICVaii~lIl 19 (68)
T PF05961_consen 9 IICVAIIGLIL 19 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 169
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=66.93 E-value=4.3 Score=22.76 Aligned_cols=14 Identities=21% Similarity=0.683 Sum_probs=8.5
Q ss_pred CCCcccccccccCC
Q 047778 110 HYSCPICRCNCLFS 123 (135)
Q Consensus 110 ~~~CP~Cr~~~~~~ 123 (135)
+..||+|+..++..
T Consensus 2 k~~CPlCkt~~n~g 15 (61)
T PF05715_consen 2 KSLCPLCKTTLNVG 15 (61)
T ss_pred CccCCcccchhhcC
Confidence 34577777766443
No 170
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=66.93 E-value=2.6 Score=22.89 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=12.3
Q ss_pred CcccccccccCCCCCCCCCCCC
Q 047778 112 SCPICRCNCLFSPTSTPTSPQQ 133 (135)
Q Consensus 112 ~CP~Cr~~~~~~~~~~~~~~~~ 133 (135)
.|.+||+++ ++.....++.++
T Consensus 3 iCvvCK~Pi-~~al~v~T~~Gp 23 (53)
T PHA02610 3 ICVVCKQPI-EKALVVETEKGP 23 (53)
T ss_pred eeeeeCCch-hhceEEecCCCC
Confidence 488888888 344444444443
No 171
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=66.91 E-value=9.9 Score=33.27 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=36.6
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccC
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 122 (135)
....|-||-++.. +|+.....-.|+--.|..|.+-=. ..+..||.|+..+..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 4568999999864 345444444577779999994433 445679999988763
No 172
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=66.05 E-value=2 Score=33.33 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=0.0
Q ss_pred Ccccccccccccc--------------CC--CeEEEcCCCCCcccHHHHHHHHhc---------CCCcccccccccC
Q 047778 71 AEAECVICLSEFV--------------EG--DVIQVLERCKHGFHSQCIQKWLYS---------HYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~--------------~~--~~~~~l~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 122 (135)
.+.+|++|+..-. +. -.....| |||+--+....-|-+. +..||.|-..+..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 3678999997521 10 1223466 9999988888888632 2359999887764
No 173
>PLN02195 cellulose synthase A
Probab=65.86 E-value=9 Score=33.25 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=36.1
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCccccccccc
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~ 121 (135)
....|-||-++.. +|+.....-.|+--.|..|.+-=- ..+..||.|+..+.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4468999999764 344444444588889999984322 34567999998876
No 174
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=65.49 E-value=8.4 Score=33.80 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=35.8
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCccccccccc
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~ 121 (135)
....|-||-++.. +|+.....-.|+--.|..|.+-=- ..+..||.|+..+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3458999999864 455444444577779999994322 45667999998776
No 175
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=6.9 Score=32.54 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=34.2
Q ss_pred ccccccccccCCCeEEEcCCCCC-cccHHHHHHHH--hc----CCCcccccccccCCCC
Q 047778 74 ECVICLSEFVEGDVIQVLERCKH-GFHSQCIQKWL--YS----HYSCPICRCNCLFSPT 125 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl--~~----~~~CP~Cr~~~~~~~~ 125 (135)
.|+||-..+.. +.. ..||| ..+..|..... .. ...||+||..+....-
T Consensus 2 ~c~ic~~s~~~---~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCccc---ccc-ccccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 68999887544 333 35999 89999998875 33 3458999987665543
No 176
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=65.17 E-value=1.7 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=15.9
Q ss_pred CeEEEcCCCCCcccHHHHHHH
Q 047778 86 DVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 86 ~~~~~l~~C~H~fh~~Ci~~w 106 (135)
......+.|+|.||..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 334455469999999998888
No 177
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=64.67 E-value=21 Score=19.33 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcc
Q 047778 3 CALTCALALNTAIRCFLRDNNNYD 26 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~~~ 26 (135)
+.+++++++..+..+-...+..++
T Consensus 7 V~i~iv~~lLg~~I~~~~K~ygYk 30 (50)
T PF12606_consen 7 VSIFIVMGLLGLSICTTLKAYGYK 30 (50)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 334444444444444444555443
No 178
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=63.85 E-value=2.4 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=17.7
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|+.|..+++... +|.+|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 46788877764321 45555555444 233455777766653
No 179
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=63.44 E-value=10 Score=25.84 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
+.+++++..+.++.++|.+|+.++
T Consensus 154 IG~~VlA~~VA~L~~~F~RR~~rr 177 (215)
T PF05084_consen 154 IGAVVLAVSVAMLTWFFLRRTGRR 177 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 456666666677777777666544
No 180
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.38 E-value=0.9 Score=33.58 Aligned_cols=48 Identities=29% Similarity=0.589 Sum_probs=35.5
Q ss_pred ccccccccccccCC--CeE-EEcCC-------CCCcccHHHHHHHHhc-CCCccccccc
Q 047778 72 EAECVICLSEFVEG--DVI-QVLER-------CKHGFHSQCIQKWLYS-HYSCPICRCN 119 (135)
Q Consensus 72 ~~~C~ICl~~~~~~--~~~-~~l~~-------C~H~fh~~Ci~~wl~~-~~~CP~Cr~~ 119 (135)
+..|.||...|... ..+ +++.. |||..+..|++.-+.. ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46799999999832 222 33333 9999999999998743 3579999874
No 181
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.90 E-value=4.4 Score=24.77 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 047778 98 FHSQCIQKWLY 108 (135)
Q Consensus 98 fh~~Ci~~wl~ 108 (135)
||.+|+..|+.
T Consensus 43 FCRNCLs~Wy~ 53 (104)
T COG3492 43 FCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 182
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=61.25 E-value=4.1 Score=32.29 Aligned_cols=60 Identities=18% Similarity=0.446 Sum_probs=37.4
Q ss_pred ccccccccccc-cCCCeEEEcCCCCCcccHHHHHHHHhc--------CCCcccccccccCCCCCCCCCC
Q 047778 72 EAECVICLSEF-VEGDVIQVLERCKHGFHSQCIQKWLYS--------HYSCPICRCNCLFSPTSTPTSP 131 (135)
Q Consensus 72 ~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~~~~~~~~~~~~~ 131 (135)
+..|.+|+.-. .....+.....|+-.||..|-...... ...|-+|..........+....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~~~ 236 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLRWA 236 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccccc
Confidence 34599998543 233344455578899999998665421 2249999776655555544433
No 183
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=60.77 E-value=12 Score=22.00 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhcC
Q 047778 11 LNTAIRCFLRDNN 23 (135)
Q Consensus 11 l~~~~~~~~~~~~ 23 (135)
+++.++.++.++.
T Consensus 16 fVap~WL~lHY~s 28 (75)
T PF06667_consen 16 FVAPIWLILHYRS 28 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444333
No 184
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=59.85 E-value=20 Score=21.11 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=2.9
Q ss_pred HHHHHhhc
Q 047778 15 IRCFLRDN 22 (135)
Q Consensus 15 ~~~~~~~~ 22 (135)
++.++.++
T Consensus 20 ~wl~lHY~ 27 (75)
T TIGR02976 20 LWLILHYR 27 (75)
T ss_pred HHHHHHHH
Confidence 33333333
No 185
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=59.25 E-value=8.8 Score=21.71 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=26.1
Q ss_pred ccccccccccccC--CCeEEEcCCCCCcccHHHHHHH
Q 047778 72 EAECVICLSEFVE--GDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 72 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
...|+.|-..... .......+.||+.+|.+-...+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 4689999988776 4566677779999888765543
No 186
>PLN02400 cellulose synthase
Probab=58.53 E-value=11 Score=33.11 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=36.3
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 123 (135)
....|-||-++.. +|+.....-.|+--.|..|.+-=- ..+..||.||..+.-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 3458999999864 455444444577779999984322 3456799999887733
No 187
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=57.76 E-value=6.4 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.697 Sum_probs=12.7
Q ss_pred CCCCcccHHHHHHHHhcCCCcccc
Q 047778 93 RCKHGFHSQCIQKWLYSHYSCPIC 116 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~CP~C 116 (135)
.|||.|-..=-+. ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4677665432222 2455678887
No 188
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.02 E-value=6.8 Score=25.66 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=14.6
Q ss_pred ccccccccCCCeEEEcCCCCCcccH
Q 047778 76 VICLSEFVEGDVIQVLERCKHGFHS 100 (135)
Q Consensus 76 ~ICl~~~~~~~~~~~l~~C~H~fh~ 100 (135)
-||.+. ...+.... |||.|+.
T Consensus 61 fi~qs~---~~rv~rce-cghsf~d 81 (165)
T COG4647 61 FICQSA---QKRVIRCE-CGHSFGD 81 (165)
T ss_pred EEEecc---cccEEEEe-ccccccC
Confidence 366655 34577776 9999985
No 189
>PRK09458 pspB phage shock protein B; Provisional
Probab=55.82 E-value=24 Score=20.80 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 047778 6 TCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~ 25 (135)
++++++++.++.++.++..+
T Consensus 11 iiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 11 TIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 34444444555555555433
No 190
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=55.62 E-value=6.2 Score=28.55 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=33.6
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCC--ccc--ccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYS--CPI--CRCNC 120 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~--CP~--Cr~~~ 120 (135)
+..|+|=+.++..+ +....|+|.|-.+-|...++...+ ||. |.+.+
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~ 238 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKE 238 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecchhhcchhe
Confidence 35699988887654 455579999999999999875544 775 54433
No 191
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=55.54 E-value=1.2 Score=32.99 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=19.5
Q ss_pred CccccccccccccCCCeEEEcC--CCCCcccHHHHHHHHhcCCCcccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
....||||-+.-.-+. +..-. +=.|.+|.-|-..|-.....||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3468999988632210 10000 11345777788888777788999954
No 192
>PF15050 SCIMP: SCIMP protein
Probab=55.16 E-value=15 Score=23.75 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccc
Q 047778 5 LTCALALNTAIRCFLRDNNNYDQQ 28 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~~~~ 28 (135)
+++.++|.+|+.|.+|+..|.+..
T Consensus 17 I~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 344455566777777777666443
No 193
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=55.07 E-value=6.5 Score=32.05 Aligned_cols=35 Identities=34% Similarity=0.638 Sum_probs=24.8
Q ss_pred CCccccccccccccC-----------CCeEEEcCCCCCcccHHHHHHH
Q 047778 70 GAEAECVICLSEFVE-----------GDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
+....|+||.|.|+. .+.|. +. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~-le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVY-LE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceee-ec-cCceeeccccchH
Confidence 455789999999864 12232 32 5889999999764
No 194
>PHA03049 IMV membrane protein; Provisional
Probab=55.04 E-value=36 Score=19.54 Aligned_cols=8 Identities=13% Similarity=0.580 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 047778 6 TCALALNT 13 (135)
Q Consensus 6 ~~~~~l~~ 13 (135)
+++..+.+
T Consensus 10 ICVaIi~l 17 (68)
T PHA03049 10 ICVVIIGL 17 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 195
>PLN02248 cellulose synthase-like protein
Probab=54.35 E-value=15 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 93 RCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
.|+...|.+|...-++....||-|+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 48899999999999988889999998873
No 196
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=54.35 E-value=24 Score=19.47 Aligned_cols=19 Identities=21% Similarity=0.140 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 047778 2 FCALTCALALNTAIRCFLR 20 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~ 20 (135)
+++++++++|...+..+.+
T Consensus 6 ~~ti~lvv~LYgY~yhLYr 24 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYR 24 (56)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3455555555555544444
No 197
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=54.26 E-value=9.3 Score=27.82 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=18.6
Q ss_pred cccccccccccCCCeEEEcCCCCCcc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGF 98 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~f 98 (135)
..||+|.+.+...+..-..+ .||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 47999999997655544555 68887
No 198
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=54.17 E-value=2.1 Score=31.83 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=28.4
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH 110 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~ 110 (135)
.+|.+|+++|..+....... |--+||..|+-.|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 48999999998655555554 66699999999998543
No 199
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=54.11 E-value=18 Score=23.97 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++.++++++|+.+.-|.++|-.
T Consensus 28 ~gsL~~iL~lil~~~wl~kr~~ 49 (137)
T COG3190 28 FGSLILILALILFLAWLVKRLG 49 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555444444433
No 200
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.93 E-value=6.6 Score=26.49 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=29.2
Q ss_pred cccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 77 ICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 77 ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
||+.--...+.....|.=.+.||..|-..-. ..||.|..++...-
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGDY 53 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCce
Confidence 6666554444444444345679999987754 36999988876543
No 201
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=53.64 E-value=15 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHHHHH-HHHHhhcC
Q 047778 1 LFCALTCALALNTAI-RCFLRDNN 23 (135)
Q Consensus 1 ll~~~~~~~~l~~~~-~~~~~~~~ 23 (135)
+++++++++++++.+ +|+.+|.+
T Consensus 71 mi~aL~~VI~Liy~l~rwL~rR~~ 94 (219)
T PRK13415 71 LIGATLFVIFLIYALVKWLNKRNR 94 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356677777776665 45555443
No 202
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.49 E-value=9.8 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=18.5
Q ss_pred ccHHHHHHHHhcCCCcccccccccCC
Q 047778 98 FHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 98 fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
-|..|-..--.+...||+|+..--.+
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccC
Confidence 56667666556778999998765444
No 203
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=53.19 E-value=20 Score=18.10 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 047778 6 TCALALNTAIRCFL 19 (135)
Q Consensus 6 ~~~~~l~~~~~~~~ 19 (135)
++.+.+..++.||.
T Consensus 18 lflv~imliif~f~ 31 (43)
T PF11395_consen 18 LFLVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555553
No 204
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=52.23 E-value=16 Score=22.83 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=26.7
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
..|.||-+++..|+......+ -..|.+|+..-.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 479999999999887777754 678999987754
No 205
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=51.95 E-value=8.7 Score=24.30 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=15.9
Q ss_pred cccccccccccCCC-eEEEcCCCCCcc
Q 047778 73 AECVICLSEFVEGD-VIQVLERCKHGF 98 (135)
Q Consensus 73 ~~C~ICl~~~~~~~-~~~~l~~C~H~f 98 (135)
..||-|.++|.-.+ ...+.|.|+|.+
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW 29 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEW 29 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccc
Confidence 46888988875322 234555677654
No 206
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=51.06 E-value=6.6 Score=29.59 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=28.2
Q ss_pred CccccccccccccCCCeEEEc--CCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVL--ERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l--~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
....||+|-+.-... .+..- .+=.+.+|.-|-..|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 457899998763221 01000 011244566677888777788999964
No 207
>PF15102 TMEM154: TMEM154 protein family
Probab=50.99 E-value=12 Score=25.10 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 047778 6 TCALALNTAI 15 (135)
Q Consensus 6 ~~~~~l~~~~ 15 (135)
+++++|++++
T Consensus 67 LLvlLLl~vV 76 (146)
T PF15102_consen 67 LLVLLLLSVV 76 (146)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 208
>TIGR03500 FliO_TIGR flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.
Probab=50.89 E-value=19 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047778 2 FCALTCALALNTAIRCFL 19 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~ 19 (135)
++++.++++++++++.+.
T Consensus 2 ~~vl~li~~~~~~~~r~~ 19 (69)
T TIGR03500 2 LLVLALIIALAWLLKRFG 19 (69)
T ss_pred EEhHHHHHHHHHHHHHhC
Confidence 445555555555555543
No 209
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=50.78 E-value=5.1 Score=26.03 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 047778 7 CALALNTAIRCFLRDN 22 (135)
Q Consensus 7 ~~~~l~~~~~~~~~~~ 22 (135)
++++++..+.++++.+
T Consensus 90 lVl~llsg~lv~rrcr 105 (129)
T PF12191_consen 90 LVLALLSGFLVWRRCR 105 (129)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3344444443443333
No 210
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=50.39 E-value=5.1 Score=21.74 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=4.5
Q ss_pred Cccccccccc
Q 047778 112 SCPICRCNCL 121 (135)
Q Consensus 112 ~CP~Cr~~~~ 121 (135)
.||+|.+++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6888877664
No 211
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=50.19 E-value=14 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=22.4
Q ss_pred CccccccccccccCCCeEEEcC--CCCCcccHHHHHHH
Q 047778 71 AEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKW 106 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~w 106 (135)
....|.||... .|. ...-. +|...||..|....
T Consensus 54 ~~~~C~iC~~~--~G~-~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGA-CIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--Cce-eEEcCCCCCCcCCCHHHHHHC
Confidence 35789999998 232 22222 48889999998663
No 212
>PRK11827 hypothetical protein; Provisional
Probab=50.04 E-value=6.5 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=10.8
Q ss_pred HHHhcCCCcccccccccCC
Q 047778 105 KWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 105 ~wl~~~~~CP~Cr~~~~~~ 123 (135)
.||..--.||.|+.++...
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 3444445677777666543
No 213
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=49.53 E-value=23 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCC
Q 047778 1 LFCALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 1 ll~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
|+++++++++++|+++.+.+-+..
T Consensus 31 L~~iL~lil~~~wl~kr~~~~~~~ 54 (137)
T COG3190 31 LILILALILFLAWLVKRLGRAPLF 54 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Confidence 467888999999999999863433
No 214
>PF15106 TMEM156: TMEM156 protein family
Probab=49.26 E-value=18 Score=25.75 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++.+++++.+++++...+.-.|
T Consensus 181 LVllVfiflii~iI~KIle~hr 202 (226)
T PF15106_consen 181 LVLLVFIFLIILIIYKILEGHR 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666666666655555443
No 215
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=49.25 E-value=1.2 Score=24.31 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=8.9
Q ss_pred ccccccccccccC
Q 047778 72 EAECVICLSEFVE 84 (135)
Q Consensus 72 ~~~C~ICl~~~~~ 84 (135)
...||.|-+.|..
T Consensus 2 ~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 2 SFTCPYCGKGFSE 14 (54)
T ss_pred CcCCCCCCCccCH
Confidence 3578888886543
No 216
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=48.95 E-value=12 Score=22.16 Aligned_cols=32 Identities=31% Similarity=0.687 Sum_probs=21.8
Q ss_pred ccccccccccccCCCeEE-EcCCCCCcccHHHHHH
Q 047778 72 EAECVICLSEFVEGDVIQ-VLERCKHGFHSQCIQK 105 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~-~l~~C~H~fh~~Ci~~ 105 (135)
...|.+|.... |..+. ..+.|.-.||..|...
T Consensus 36 ~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 46899999773 32221 2335999999999755
No 217
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=48.65 E-value=28 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 047778 2 FCALTCALALNTAIRCFLRDN 22 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~ 22 (135)
++++++++++.+++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (70)
T PF00672_consen 2 LVLFLIILLLSLLLAWLLARR 22 (70)
T ss_dssp HHHHHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444
No 218
>PF15179 Myc_target_1: Myc target protein 1
Probab=48.38 E-value=33 Score=23.89 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 047778 4 ALTCALALNTAIRCFLRDN 22 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~ 22 (135)
++|+..++.+++.|+-||+
T Consensus 32 GLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 32 GLVIGALIWALLTWLSRRR 50 (197)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3333333333444444433
No 219
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=48.30 E-value=48 Score=19.78 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047778 4 ALTCALALNTAIRCF 18 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~ 18 (135)
++++.+.|++++...
T Consensus 18 VF~fL~lLi~~i~~~ 32 (82)
T TIGR01195 18 VFLFLSLLIYAVRGM 32 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444333
No 220
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.97 E-value=16 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 95 KHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 95 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.|.||.+|.+.-|. ..||.|-..+...
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv~R 54 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELVAR 54 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhhcC
Confidence 36799999998654 6899998777654
No 221
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=5.1 Score=31.59 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=26.2
Q ss_pred cccccccccccCCCeE----EEcCCCCCcccHHHHHHHHhc
Q 047778 73 AECVICLSEFVEGDVI----QVLERCKHGFHSQCIQKWLYS 109 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~----~~l~~C~H~fh~~Ci~~wl~~ 109 (135)
..||.|...++..+.. .....|.|.||..|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 4599999998775521 112249999999998888643
No 222
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=47.83 E-value=12 Score=23.92 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=27.5
Q ss_pred CccccccccccccC--CCeEEEcCCCCCcccHHHHHHHHhcCC---Ccccccc
Q 047778 71 AEAECVICLSEFVE--GDVIQVLERCKHGFHSQCIQKWLYSHY---SCPICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~ 118 (135)
++..|.+|...|.. +.. .....|+|.+|..|-.. ..+. .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 56789999998643 223 34446999999998654 2112 3777753
No 223
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=47.33 E-value=19 Score=26.01 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=19.0
Q ss_pred ccHHHHHHHHhcCCCcccccccccCCC
Q 047778 98 FHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 98 fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.|.+|-.+--.+...||+|+..--...
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCC
Confidence 556676666567789999987655443
No 224
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=47.20 E-value=11 Score=30.21 Aligned_cols=43 Identities=26% Similarity=0.525 Sum_probs=23.2
Q ss_pred ccccccccccccCCCeEEEcCCCC-CcccHHHHHHHHhcCCCcccccccccCCCCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCK-HGFHSQCIQKWLYSHYSCPICRCNCLFSPTST 127 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (135)
-..|+-||+++...+.-..-..|. +. ..||.|-..+.......
T Consensus 26 ~~yCp~CL~~~p~~e~~~~~nrC~r~C-------------f~CP~C~~~L~~~~~~~ 69 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSEARSEKNRCSRNC-------------FDCPICFSPLSVRASDT 69 (483)
T ss_pred eeECccccccCChhhheeccceecccc-------------ccCCCCCCcceeEeccc
Confidence 345888887775543211111243 22 26888887776654443
No 225
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=47.15 E-value=18 Score=23.04 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=19.5
Q ss_pred cCCCCCcccHHHHHHHHhcCCCcccccccccCCCCC
Q 047778 91 LERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTS 126 (135)
Q Consensus 91 l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 126 (135)
.|+|++.. ..+.+...|+.|++++...+..
T Consensus 72 CP~C~K~T------KmLGr~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 72 CPNCGKQT------KMLGRVDACMHCKEPLTLDPSL 101 (114)
T ss_pred CCCCCChH------hhhchhhccCcCCCcCccCchh
Confidence 44566643 2345566899999988766543
No 226
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=47.02 E-value=6.5 Score=26.37 Aligned_cols=26 Identities=31% Similarity=0.732 Sum_probs=17.4
Q ss_pred CCCcccHHHHHHHHhcC-----------CCcccccccccCCC
Q 047778 94 CKHGFHSQCIQKWLYSH-----------YSCPICRCNCLFSP 124 (135)
Q Consensus 94 C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~~ 124 (135)
+||.| +.||..+ -+||+|-..-+.+.
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~ 46 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKA 46 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeee
Confidence 67888 4598432 36999977555443
No 227
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=46.94 E-value=37 Score=17.63 Aligned_cols=15 Identities=0% Similarity=0.188 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 047778 4 ALTCALALNTAIRCF 18 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~ 18 (135)
++++++++...+.++
T Consensus 18 vI~~~igm~~~~~~~ 32 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRY 32 (42)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 228
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.93 E-value=28 Score=21.50 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=27.9
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY 108 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 108 (135)
+..|.||-+.+..|+.....+ .-..|.+|+..-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHh
Confidence 468999999999998887765 44589999977553
No 229
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=46.74 E-value=3 Score=21.49 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=13.2
Q ss_pred CCCCcccHHHHHHHHhcCCCcccccc
Q 047778 93 RCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
.|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 47777754211100 12345999987
No 230
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=46.52 E-value=28 Score=21.74 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 047778 3 CALTCALALNTA 14 (135)
Q Consensus 3 ~~~~~~~~l~~~ 14 (135)
++++.++.+.++
T Consensus 22 GVv~~al~~SlL 33 (102)
T PF15176_consen 22 GVVVTALVTSLL 33 (102)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 231
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=46.41 E-value=6.6 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++.+++++++.+++..+++..+
T Consensus 3 ~f~i~~~iii~~~~~~~~~~~~ 24 (110)
T PF10694_consen 3 FFIIVFIIIIGIIIFVFIRQIR 24 (110)
T ss_dssp ----------------------
T ss_pred EeHHhhhhhhHHHHHHHHHHHH
Confidence 3444444444444444444333
No 232
>PF13974 YebO: YebO-like protein
Probab=46.35 E-value=21 Score=21.34 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 047778 5 LTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~ 23 (135)
.++++.+.+++++|.-|..
T Consensus 4 ~~~~~lv~livWFFVnRaS 22 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFVNRAS 22 (80)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554443
No 233
>PRK05978 hypothetical protein; Provisional
Probab=46.14 E-value=15 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 96 HGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 96 H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
+.|. .+++-+..||.|-.++...+.
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred cccc-----cccccCCCccccCCccccCCc
Confidence 6675 578888999999887765543
No 234
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=45.18 E-value=9.6 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.642 Sum_probs=17.8
Q ss_pred CCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 93 RCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
+||-.|-.+= ++.-+.||.|++...+.+
T Consensus 63 kCGfef~~~~----ik~pSRCP~CKSE~Ie~p 90 (97)
T COG3357 63 KCGFEFRDDK----IKKPSRCPKCKSEWIEEP 90 (97)
T ss_pred ccCccccccc----cCCcccCCcchhhcccCC
Confidence 4776665421 233456999999887654
No 235
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.42 E-value=20 Score=23.19 Aligned_cols=28 Identities=4% Similarity=-0.187 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCccccC
Q 047778 2 FCALTCALALNTAIRCFLRDNNNYDQQR 29 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 29 (135)
++++.++++++.++.++.+..+|++...
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3556666677777765566665554443
No 236
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=44.18 E-value=46 Score=25.28 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 047778 2 FCALTCALALNTAIRCFLR 20 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~ 20 (135)
|++++++++|++|+..++.
T Consensus 159 lf~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 159 LFWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 4455555555555554444
No 237
>PRK10220 hypothetical protein; Provisional
Probab=44.09 E-value=18 Score=22.97 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=15.2
Q ss_pred cccccccccccCCC-eEEEcCCCCCcc
Q 047778 73 AECVICLSEFVEGD-VIQVLERCKHGF 98 (135)
Q Consensus 73 ~~C~ICl~~~~~~~-~~~~l~~C~H~f 98 (135)
..||-|-++|.-.+ ...+.|.|+|-+
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW 30 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEW 30 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcC
Confidence 46888888765332 234555566644
No 238
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=43.96 E-value=24 Score=21.56 Aligned_cols=40 Identities=20% Similarity=0.461 Sum_probs=28.7
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
...|-||-..... =||.||..|... ...|.+|-..+....
T Consensus 44 ~~~C~~CK~~v~q---------~g~~YCq~CAYk----kGiCamCGKki~dtk 83 (90)
T PF10235_consen 44 SSKCKICKTKVHQ---------PGAKYCQTCAYK----KGICAMCGKKILDTK 83 (90)
T ss_pred Ccccccccccccc---------CCCccChhhhcc----cCcccccCCeecccc
Confidence 4579999776432 478899999554 568999977775443
No 239
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=43.70 E-value=65 Score=19.39 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.6
Q ss_pred CCCCHHHHhhCcce
Q 047778 47 NKPSAEAAAAHTLV 60 (135)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (135)
..+..+.++++-..
T Consensus 50 D~lTpDQVrAlHRl 63 (92)
T PHA02681 50 DKMTDDQVRAFHAL 63 (92)
T ss_pred ccCCHHHHHHHHHH
Confidence 44556666665433
No 240
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=43.45 E-value=6.9 Score=18.78 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=8.8
Q ss_pred cccccccccccCC-CeEEEcCCCCCc
Q 047778 73 AECVICLSEFVEG-DVIQVLERCKHG 97 (135)
Q Consensus 73 ~~C~ICl~~~~~~-~~~~~l~~C~H~ 97 (135)
..|+.|-+++.-. ..+.+.+.|+|.
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCCcceeccCCEEeCCccccc
Confidence 3577777765421 233345557764
No 241
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=42.93 E-value=37 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 047778 2 FCALTCALALNTAIRC 17 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~ 17 (135)
++++..++.++.++.+
T Consensus 18 ~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 18 AFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 242
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=42.84 E-value=24 Score=19.78 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=10.1
Q ss_pred CCccccccccccccCC
Q 047778 70 GAEAECVICLSEFVEG 85 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~ 85 (135)
++...|++|-.++..+
T Consensus 37 ~~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 37 EEEPVCPLCKSPMVSG 52 (59)
T ss_pred CCCccCCCcCCccccc
Confidence 3446677777776554
No 243
>PHA02650 hypothetical protein; Provisional
Probab=42.76 E-value=47 Score=19.78 Aligned_cols=18 Identities=0% Similarity=-0.047 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047778 4 ALTCALALNTAIRCFLRD 21 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~ 21 (135)
++++++.++++...|++-
T Consensus 55 ~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 55 LIFSLIIVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 244
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=41.81 E-value=15 Score=19.91 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 047778 5 LTCALALNT 13 (135)
Q Consensus 5 ~~~~~~l~~ 13 (135)
++++++++.
T Consensus 24 vlfi~Gi~i 32 (50)
T PF02038_consen 24 VLFILGILI 32 (50)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 245
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=41.60 E-value=21 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=21.1
Q ss_pred ccccccccccCC---CeEEEcCCCCCcccHHHHHHH
Q 047778 74 ECVICLSEFVEG---DVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 74 ~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~w 106 (135)
.|.||.. |... -......-|||.-|.+|-..-
T Consensus 130 ~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 130 MCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CccccCC-cccCCCCeeEEeccCCCceehhhhhccc
Confidence 4778855 6432 233444569999999997653
No 246
>PF15353 HECA: Headcase protein family homologue
Probab=41.53 E-value=19 Score=22.71 Aligned_cols=13 Identities=31% Similarity=0.923 Sum_probs=11.8
Q ss_pred CCCcccHHHHHHH
Q 047778 94 CKHGFHSQCIQKW 106 (135)
Q Consensus 94 C~H~fh~~Ci~~w 106 (135)
.|+..|.+|++.|
T Consensus 40 ~~~~MH~~CF~~w 52 (107)
T PF15353_consen 40 FGQYMHRECFEKW 52 (107)
T ss_pred CCCchHHHHHHHH
Confidence 5788999999999
No 247
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.49 E-value=23 Score=28.90 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++++++++++++++.++++++.
T Consensus 2 iI~iivi~l~~~~~~~~~rk~~ 23 (560)
T PF06160_consen 2 IIGIIVIVLIIYIIGYIYRKRY 23 (560)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 248
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=41.37 E-value=32 Score=24.60 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 047778 6 TCALALNTAIR 16 (135)
Q Consensus 6 ~~~~~l~~~~~ 16 (135)
|++|++++++|
T Consensus 51 ILVI~i~v~vR 61 (221)
T PF08374_consen 51 ILVIFIVVLVR 61 (221)
T ss_pred HHHHHHHHHHH
Confidence 33333333443
No 249
>PF15069 FAM163: FAM163 family
Probab=41.04 E-value=54 Score=21.84 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=4.3
Q ss_pred ccccccc
Q 047778 72 EAECVIC 78 (135)
Q Consensus 72 ~~~C~IC 78 (135)
...|+-|
T Consensus 91 ~~~CptC 97 (143)
T PF15069_consen 91 RSYCPTC 97 (143)
T ss_pred CCcCCCC
Confidence 3457766
No 250
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=40.94 E-value=45 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 047778 5 LTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~ 23 (135)
+.+++.++-++|.++.+++
T Consensus 315 i~l~~~vvR~vR~~~~hr~ 333 (374)
T PF01528_consen 315 ICLIMMVVRLVRAFLYHRR 333 (374)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344444456666666554
No 251
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.92 E-value=7.5 Score=29.23 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=27.3
Q ss_pred ccccccccccccCC--------CeEEEcCCCCCcccHHHHHHHHhcCCCcccccc
Q 047778 72 EAECVICLSEFVEG--------DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~~~--------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 118 (135)
...||||-+.-..+ +..+ +.+|.-|-..|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLR------YLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 45899998863211 2233 34555677788777788999965
No 252
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=40.68 E-value=16 Score=30.27 Aligned_cols=49 Identities=24% Similarity=0.634 Sum_probs=30.3
Q ss_pred ccccccccccccC--CCeEEEcCCCCCcccHHHHHHHHh-----cCCCccccccccc
Q 047778 72 EAECVICLSEFVE--GDVIQVLERCKHGFHSQCIQKWLY-----SHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~ 121 (135)
...|.+|-..=.. +..+..- .|+-.+|..|+..|+. +...||-||.-..
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~-~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~ 73 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACS-DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEA 73 (694)
T ss_pred hhhhhhhccccccccCcchhhh-hhcccCCcchhhHHHhHHHhcCCcccCCceeeee
Confidence 4556666443222 2122233 4899999999999983 2346888876443
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=40.33 E-value=24 Score=30.02 Aligned_cols=49 Identities=31% Similarity=0.662 Sum_probs=29.8
Q ss_pred CCccccccccccccC----C-----CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVE----G-----DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~----~-----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..+..|+-|...|-. | -..-+.+.|.|.-|.+=|.. ...||+|...+..
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMESF 1186 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhhc
Confidence 344567666666532 1 12234556899888766554 4689999766543
No 254
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=39.88 E-value=29 Score=18.48 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhc
Q 047778 9 LALNTAIRCFLRDN 22 (135)
Q Consensus 9 ~~l~~~~~~~~~~~ 22 (135)
+.++.++.|.++.+
T Consensus 21 ~~Figiv~wa~~p~ 34 (48)
T cd01324 21 LFFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHHhCCC
Confidence 33344444444433
No 255
>PHA02844 putative transmembrane protein; Provisional
Probab=39.76 E-value=44 Score=19.62 Aligned_cols=17 Identities=6% Similarity=0.080 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047778 4 ALTCALALNTAIRCFLR 20 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~ 20 (135)
++++++.++++...|++
T Consensus 54 ~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 54 TIIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444444
No 256
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=39.54 E-value=23 Score=22.51 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 047778 14 AIRCFLR 20 (135)
Q Consensus 14 ~~~~~~~ 20 (135)
++++++.
T Consensus 16 i~yF~~i 22 (109)
T PRK05886 16 GFMYFAS 22 (109)
T ss_pred HHHHHHc
Confidence 3333433
No 257
>PF15345 TMEM51: Transmembrane protein 51
Probab=39.20 E-value=25 Score=25.35 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 047778 3 CALTCALALNTAIRCF 18 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~ 18 (135)
++..++++|+.+...+
T Consensus 65 VG~Gv~LLLLSICL~I 80 (233)
T PF15345_consen 65 VGSGVALLLLSICLSI 80 (233)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344444444444333
No 258
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=38.89 E-value=30 Score=19.98 Aligned_cols=16 Identities=6% Similarity=0.137 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhcCCc
Q 047778 10 ALNTAIRCFLRDNNNY 25 (135)
Q Consensus 10 ~l~~~~~~~~~~~~~~ 25 (135)
++.+++.+|+++++.+
T Consensus 46 ~lt~ltN~YFK~k~dr 61 (68)
T PF04971_consen 46 LLTYLTNLYFKIKEDR 61 (68)
T ss_pred HHHHHhHhhhhhhHhh
Confidence 3344555555555433
No 259
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=38.71 E-value=18 Score=16.98 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=15.8
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHH
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQC 102 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 102 (135)
.|.+|..+..... .-.-..|+-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 5788866654432 222234676777666
No 260
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=37.48 E-value=16 Score=20.10 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=6.8
Q ss_pred CcccccccccCC
Q 047778 112 SCPICRCNCLFS 123 (135)
Q Consensus 112 ~CP~Cr~~~~~~ 123 (135)
.|.+||+++...
T Consensus 3 ~CvVCKqpi~~a 14 (54)
T PF10886_consen 3 ICVVCKQPIDDA 14 (54)
T ss_pred eeeeeCCccCcc
Confidence 366666666543
No 261
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=37.12 E-value=34 Score=16.75 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=4.7
Q ss_pred ccccccccc
Q 047778 74 ECVICLSEF 82 (135)
Q Consensus 74 ~C~ICl~~~ 82 (135)
.|+-|-..|
T Consensus 4 ~CP~C~~~~ 12 (38)
T TIGR02098 4 QCPNCKTSF 12 (38)
T ss_pred ECCCCCCEE
Confidence 455555544
No 262
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=37.06 E-value=1.6 Score=24.08 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=17.4
Q ss_pred ccccc--ccccccCCCe----EEEcCCCCCcccHHHHHHH
Q 047778 73 AECVI--CLSEFVEGDV----IQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 73 ~~C~I--Cl~~~~~~~~----~~~l~~C~H~fh~~Ci~~w 106 (135)
.-|+- |-..+...+. ...-+.|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 36765 6665543221 1344458899988887776
No 263
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=36.13 E-value=32 Score=21.37 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=19.8
Q ss_pred CCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 94 CKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 94 C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
||+.-|.--+.++.. ..+||.|++++++.
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCcc
Confidence 777666666666532 34699999988753
No 264
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.96 E-value=69 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCccc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNYDQ 27 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~~~ 27 (135)
|++++.+++++.++ +++.|..+...
T Consensus 255 fli~lgvLafi~~i-~lM~rlGr~g~ 279 (299)
T KOG3970|consen 255 FLIFLGVLAFITII-MLMKRLGRSGE 279 (299)
T ss_pred HHHHHHHHHHHHHH-HHHHHhccccc
Confidence 45556666666655 44444444433
No 265
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.88 E-value=18 Score=30.98 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=32.7
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-hc-----CCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-YS-----HYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~-----~~~CP~Cr~~~~~ 122 (135)
....|..|....-+ ..-+.+.||+.+|.+|+..|. .. ...|+.|+...+-
T Consensus 228 ~~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 228 IREMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred cchhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 34568888766422 233556799999999999995 11 1247777665443
No 266
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=35.57 E-value=22 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.561 Sum_probs=16.9
Q ss_pred EcCCCCCcccHHHHHHHHhcCCCcccccccc
Q 047778 90 VLERCKHGFHSQCIQKWLYSHYSCPICRCNC 120 (135)
Q Consensus 90 ~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (135)
...+|||+|+- -+..||.|....
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 44569999864 456799998774
No 267
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=35.53 E-value=18 Score=17.98 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=17.0
Q ss_pred EcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 90 VLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 90 ~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+.+.||++||..=.-+ +....|..|...+.
T Consensus 3 ~C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPP--KVEGVCDNCGGELV 32 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred CcCCCCCccccccCCC--CCCCccCCCCCeeE
Confidence 3456999999522111 23446888876543
No 268
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=35.51 E-value=18 Score=20.36 Aligned_cols=14 Identities=21% Similarity=0.951 Sum_probs=10.1
Q ss_pred CCcccccccccCCC
Q 047778 111 YSCPICRCNCLFSP 124 (135)
Q Consensus 111 ~~CP~Cr~~~~~~~ 124 (135)
-.||+||.++....
T Consensus 9 LaCP~~kg~L~~~~ 22 (60)
T COG2835 9 LACPVCKGPLVYDE 22 (60)
T ss_pred eeccCcCCcceEec
Confidence 35999998876554
No 269
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=35.06 E-value=19 Score=28.19 Aligned_cols=32 Identities=19% Similarity=0.563 Sum_probs=22.6
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
.+|+||+-.|-..-.... .|.-..|.+|+.+.
T Consensus 75 ~ecpicflyyps~~n~~r--cC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVR--CCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccchhh--hhccchhhhheecc
Confidence 589999998865332222 28888888888664
No 270
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=35.01 E-value=53 Score=15.17 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 047778 4 ALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~ 23 (135)
++++++++..+..+.+.+-.
T Consensus 3 ~~~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHH
Confidence 45555555555555555443
No 271
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=34.69 E-value=57 Score=19.93 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047778 3 CALTCALALNTAIRCFLR 20 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (135)
++++.++++++...++++
T Consensus 43 ~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 43 FTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444555554444443
No 272
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=34.24 E-value=55 Score=19.33 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 047778 4 ALTCALALNTAIRCFL 19 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~ 19 (135)
+.++++.+.++..+|+
T Consensus 56 ~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 56 AAILVLLLAFYAFFYL 71 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 273
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=34.08 E-value=24 Score=22.27 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=9.1
Q ss_pred cccccccccccCC
Q 047778 73 AECVICLSEFVEG 85 (135)
Q Consensus 73 ~~C~ICl~~~~~~ 85 (135)
..|+.|-++|.-.
T Consensus 4 p~cp~c~sEytYe 16 (112)
T COG2824 4 PPCPKCNSEYTYE 16 (112)
T ss_pred CCCCccCCceEEe
Confidence 4688888887543
No 274
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=33.79 E-value=7.1 Score=28.91 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=32.3
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHH----hcCCCccccccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL----YSHYSCPICRCNCL 121 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~~~ 121 (135)
.|.||-..- +.+.+.....|.-.||.-|+.+=+ ..+.+|-+|-..+.
T Consensus 283 ~csicgtse-nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 283 YCSICGTSE-NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred eeccccCcC-CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 477886653 345565666788889999988766 34557888865443
No 275
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=32.84 E-value=30 Score=19.61 Aligned_cols=9 Identities=11% Similarity=0.623 Sum_probs=4.3
Q ss_pred EcCCCCCcc
Q 047778 90 VLERCKHGF 98 (135)
Q Consensus 90 ~l~~C~H~f 98 (135)
+.+.|||.|
T Consensus 55 ~Cp~c~r~Y 63 (68)
T PF03966_consen 55 ICPECGREY 63 (68)
T ss_dssp EETTTTEEE
T ss_pred EcCCCCCEE
Confidence 334455554
No 276
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=32.74 E-value=29 Score=19.66 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=8.9
Q ss_pred CCcccccccccC
Q 047778 111 YSCPICRCNCLF 122 (135)
Q Consensus 111 ~~CP~Cr~~~~~ 122 (135)
..||+|++.+.-
T Consensus 7 v~CP~C~k~~~w 18 (62)
T PRK00418 7 VNCPTCGKPVEW 18 (62)
T ss_pred ccCCCCCCcccc
Confidence 459999887653
No 277
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=32.52 E-value=38 Score=25.27 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 047778 2 FCALTCALALNTAIRCFLR 20 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~ 20 (135)
+++++++|+|++++..=+|
T Consensus 5 iLIIvGaiaI~aLl~hGlw 23 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLW 23 (284)
T ss_pred hHHHHHHHHHHHHHHcccc
Confidence 4566666666665533333
No 278
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=32.34 E-value=15 Score=33.38 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=36.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRCNC 120 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 120 (135)
.....|-+|.....+...+.-. .|.-.||..|+..-+.. ...||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4456799999987664444333 48889999999998743 34699998754
No 279
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.26 E-value=5.7 Score=17.70 Aligned_cols=6 Identities=33% Similarity=0.401 Sum_probs=2.2
Q ss_pred cccccc
Q 047778 76 VICLSE 81 (135)
Q Consensus 76 ~ICl~~ 81 (135)
+-|-.+
T Consensus 3 p~CG~~ 8 (23)
T PF13240_consen 3 PNCGAE 8 (23)
T ss_pred cccCCC
Confidence 333333
No 280
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.18 E-value=88 Score=17.84 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 047778 3 CALTCALAL 11 (135)
Q Consensus 3 ~~~~~~~~l 11 (135)
+++.+++++
T Consensus 3 iilali~G~ 11 (64)
T PF03672_consen 3 IILALIVGA 11 (64)
T ss_pred HHHHHHHHH
Confidence 333333333
No 281
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=32.13 E-value=53 Score=26.80 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++++++++++.+.+.+++|++.
T Consensus 5 iv~llVilv~~~~~g~~lRkk~ 26 (570)
T COG4477 5 IVALLVILVAAYAVGYLLRKKN 26 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4555555555555555555444
No 282
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.81 E-value=58 Score=23.89 Aligned_cols=6 Identities=0% Similarity=0.180 Sum_probs=2.2
Q ss_pred HHHhhc
Q 047778 17 CFLRDN 22 (135)
Q Consensus 17 ~~~~~~ 22 (135)
++++++
T Consensus 21 ~l~~r~ 26 (299)
T KOG3054|consen 21 FLWKRR 26 (299)
T ss_pred HHHHhh
Confidence 333333
No 283
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=31.81 E-value=66 Score=19.01 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=20.1
Q ss_pred cccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 81 EFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 81 ~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
.+..++.+.+.+.|.|.| ..|..++
T Consensus 40 ~~~~G~~v~l~~GCDkt~-~tC~~kF 64 (80)
T PF09356_consen 40 GLAVGDTVTLYPGCDKTF-ATCRAKF 64 (80)
T ss_pred cCCCCCEEEEEeCCCCCH-HHHHHHh
Confidence 345688899999999988 7887775
No 284
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=31.80 E-value=1.2e+02 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 047778 5 LTCALALNTAIRCF 18 (135)
Q Consensus 5 ~~~~~~l~~~~~~~ 18 (135)
+++++++++++.+|
T Consensus 31 LivLVIIiLlImlf 44 (85)
T PF10717_consen 31 LIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444344
No 285
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.75 E-value=26 Score=17.09 Aligned_cols=8 Identities=50% Similarity=1.310 Sum_probs=5.0
Q ss_pred CCcccccc
Q 047778 111 YSCPICRC 118 (135)
Q Consensus 111 ~~CP~Cr~ 118 (135)
..||+|..
T Consensus 19 ~~CP~Cg~ 26 (34)
T cd00729 19 EKCPICGA 26 (34)
T ss_pred CcCcCCCC
Confidence 35777754
No 286
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=31.71 E-value=50 Score=21.68 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 047778 2 FCALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
++..++.+++.++-.+|+.|+-.
T Consensus 11 ~~W~~vli~l~~IGGfFMFRKFL 33 (141)
T PF11084_consen 11 LFWVVVLIGLMAIGGFFMFRKFL 33 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455566666666666666543
No 287
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=31.44 E-value=34 Score=25.08 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhc
Q 047778 10 ALNTAIRCFLRDN 22 (135)
Q Consensus 10 ~l~~~~~~~~~~~ 22 (135)
++++++.-++.++
T Consensus 215 ~~Y~i~g~~~n~~ 227 (268)
T PF09451_consen 215 AAYLIFGSWYNYN 227 (268)
T ss_pred HHHhhhhhheeec
Confidence 3444443333333
No 288
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=31.42 E-value=55 Score=19.38 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
++.+++++++.++..+.+.|-|
T Consensus 45 ~G~~lf~~G~~Fi~GfI~~RDR 66 (77)
T PF11118_consen 45 AGLLLFAIGVGFIAGFILHRDR 66 (77)
T ss_pred HHHHHHHHHHHHHHhHhheeec
Confidence 4566777777777766655443
No 289
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=31.41 E-value=14 Score=24.95 Aligned_cols=12 Identities=8% Similarity=-0.023 Sum_probs=4.5
Q ss_pred HHHHHHHHhhcC
Q 047778 12 NTAIRCFLRDNN 23 (135)
Q Consensus 12 ~~~~~~~~~~~~ 23 (135)
++++++|+.|++
T Consensus 67 l~lvf~~c~r~k 78 (154)
T PF04478_consen 67 LALVFIFCIRRK 78 (154)
T ss_pred HHhheeEEEecc
Confidence 333333433333
No 290
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=31.32 E-value=27 Score=22.29 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=2.8
Q ss_pred ccHHHHH
Q 047778 98 FHSQCIQ 104 (135)
Q Consensus 98 fh~~Ci~ 104 (135)
|.+.-|.
T Consensus 74 v~r~AI~ 80 (113)
T PRK06531 74 FELAAIK 80 (113)
T ss_pred EEhhHhh
Confidence 3444443
No 291
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=31.30 E-value=29 Score=26.78 Aligned_cols=6 Identities=17% Similarity=-0.080 Sum_probs=2.1
Q ss_pred HHHHHH
Q 047778 12 NTAIRC 17 (135)
Q Consensus 12 ~~~~~~ 17 (135)
+|+.|+
T Consensus 317 ~~~~~~ 322 (361)
T PF12259_consen 317 AWLYRT 322 (361)
T ss_pred Hhheee
Confidence 333333
No 292
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.26 E-value=53 Score=21.62 Aligned_cols=17 Identities=29% Similarity=0.137 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047778 3 CALTCALALNTAIRCFL 19 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~ 19 (135)
..++.+++|++++++++
T Consensus 9 ~~~i~Flil~~il~~~~ 25 (156)
T PRK05759 9 GQLIAFLILVWFIMKFV 25 (156)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444455554443
No 293
>PRK00523 hypothetical protein; Provisional
Probab=31.26 E-value=66 Score=18.83 Aligned_cols=8 Identities=0% Similarity=-0.130 Sum_probs=3.1
Q ss_pred CCCCHHHH
Q 047778 47 NKPSAEAA 54 (135)
Q Consensus 47 ~~~~~~~~ 54 (135)
...+++.+
T Consensus 38 Ppine~mi 45 (72)
T PRK00523 38 PPITENMI 45 (72)
T ss_pred cCCCHHHH
Confidence 33444433
No 294
>PRK01844 hypothetical protein; Provisional
Probab=31.01 E-value=65 Score=18.85 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q 047778 14 AIRCFLRDN 22 (135)
Q Consensus 14 ~~~~~~~~~ 22 (135)
+..+|+.|+
T Consensus 19 ~~Gff~ark 27 (72)
T PRK01844 19 ALGFFIARK 27 (72)
T ss_pred HHHHHHHHH
Confidence 334444433
No 295
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=30.99 E-value=23 Score=16.19 Aligned_cols=9 Identities=33% Similarity=1.087 Sum_probs=6.2
Q ss_pred Ccccccccc
Q 047778 112 SCPICRCNC 120 (135)
Q Consensus 112 ~CP~Cr~~~ 120 (135)
.||+|-+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588886655
No 296
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.96 E-value=31 Score=24.70 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHh
Q 047778 6 TCALALNTAIRCFLR 20 (135)
Q Consensus 6 ~~~~~l~~~~~~~~~ 20 (135)
++|++|++++.++++
T Consensus 21 ~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 21 GIVSLLIIIVAYQLF 35 (217)
T ss_pred HHHHHHHHHHhhhhe
Confidence 333344444434433
No 297
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=30.89 E-value=22 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 047778 3 CALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~ 23 (135)
+++++++++++.+.+.+..++
T Consensus 15 gi~Ll~lLl~cgiGcvwhwkh 35 (158)
T PF11770_consen 15 GISLLLLLLLCGIGCVWHWKH 35 (158)
T ss_pred HHHHHHHHHHHhcceEEEeec
Confidence 344444555555555555333
No 298
>PRK01741 cell division protein ZipA; Provisional
Probab=30.37 E-value=55 Score=25.01 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 047778 2 FCALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
+++++++++|+.++.+=+|..||
T Consensus 6 iliILg~lal~~Lv~hgiWsnRr 28 (332)
T PRK01741 6 ILIILGILALVALVAHGIWSNRR 28 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhh
Confidence 44555556666655555554443
No 299
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=27 Score=29.22 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=27.5
Q ss_pred ccccccccccc-CCCeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 73 AECVICLSEFV-EGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 73 ~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
..|-+|...=. ..+..+.+. |+-.||..|.+. -++.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~-C~~~~C~~c~~~---~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTF-CYTPYCVACSLD---YASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccc-cCCcchHhhhhh---hhccCcccC
Confidence 46888877643 223344454 999999998555 456799993
No 300
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=30.29 E-value=58 Score=19.79 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 047778 3 CALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~ 23 (135)
.+.+++++|++++.+|+....
T Consensus 37 m~~lmllGL~WiVvyYi~~~~ 57 (87)
T PF06781_consen 37 MLGLMLLGLLWIVVYYISGGQ 57 (87)
T ss_pred HHHHHHHHHHHHhhhhcccCC
Confidence 456778889999988877554
No 301
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.27 E-value=45 Score=29.44 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCccccccccccccCCCeEEEcCCCCC-----cccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKH-----GFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H-----~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.....|+=|-.... ....|.||. .||..| .+......||-|...+...
T Consensus 624 Vg~RfCpsCG~~t~----~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 624 IGRRKCPSCGKETF----YRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred ccCccCCCCCCcCC----cccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 34567888877642 246677884 588888 3334445699997766543
No 302
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=30.01 E-value=53 Score=21.71 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=10.6
Q ss_pred CCcccccccccCCC
Q 047778 111 YSCPICRCNCLFSP 124 (135)
Q Consensus 111 ~~CP~Cr~~~~~~~ 124 (135)
..||.|...+....
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 67999988876543
No 303
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=29.95 E-value=1.2e+02 Score=17.65 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 047778 6 TCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~ 24 (135)
++++.|.++..|...|+..
T Consensus 6 ll~vvll~~clC~lsrRvk 24 (74)
T PF05083_consen 6 LLAVVLLSACLCRLSRRVK 24 (74)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444433
No 304
>PRK01343 zinc-binding protein; Provisional
Probab=29.86 E-value=30 Score=19.28 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=8.4
Q ss_pred CCCccccccccc
Q 047778 110 HYSCPICRCNCL 121 (135)
Q Consensus 110 ~~~CP~Cr~~~~ 121 (135)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 346999987654
No 305
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=29.75 E-value=54 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNYD 26 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~~ 26 (135)
+.+.+.++.|+++.+++.||++++.
T Consensus 19 ~atA~g~v~l~~lA~~lkRRr~kkk 43 (514)
T PF10265_consen 19 FATAVGVVSLIFLAHYLKRRRRKKK 43 (514)
T ss_pred ehhHHHHHHHHHHHHHHHHhhcccc
Confidence 4455555666666666666655443
No 306
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.60 E-value=38 Score=20.98 Aligned_cols=17 Identities=41% Similarity=0.315 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047778 4 ALTCALALNTAIRCFLR 20 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~ 20 (135)
.+++.+++++.++||+-
T Consensus 10 ~~ll~~vl~~~ifyFli 26 (97)
T COG1862 10 VLLLPLVLIFAIFYFLI 26 (97)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455555555555543
No 307
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.55 E-value=45 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=5.4
Q ss_pred cccccccccCC
Q 047778 113 CPICRCNCLFS 123 (135)
Q Consensus 113 CP~Cr~~~~~~ 123 (135)
||.|-..+...
T Consensus 29 CP~CG~~~~~~ 39 (108)
T PF09538_consen 29 CPKCGTEFPPE 39 (108)
T ss_pred CCCCCCccCcc
Confidence 55555444433
No 308
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.54 E-value=43 Score=24.62 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=22.7
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
....|+.|-. + ....-..+.||+.+|.+=...+
T Consensus 308 tS~~C~~cg~-~--~~r~~~C~~cg~~~~rD~naa~ 340 (364)
T COG0675 308 TSKTCPCCGH-L--SGRLFKCPRCGFVHDRDVNAAL 340 (364)
T ss_pred CcccccccCC-c--cceeEECCCCCCeehhhHHHHH
Confidence 3468999988 2 2344566779999998855443
No 309
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=29.49 E-value=16 Score=20.00 Aligned_cols=6 Identities=67% Similarity=1.890 Sum_probs=1.6
Q ss_pred cccccc
Q 047778 113 CPICRC 118 (135)
Q Consensus 113 CP~Cr~ 118 (135)
||+|..
T Consensus 27 CP~C~a 32 (54)
T PF09237_consen 27 CPICGA 32 (54)
T ss_dssp -TTT--
T ss_pred CCcchh
Confidence 555544
No 310
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=29.27 E-value=48 Score=16.69 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=23.2
Q ss_pred ccccccccccccCCC-eEEEcCCCCCcccHHHHHH
Q 047778 72 EAECVICLSEFVEGD-VIQVLERCKHGFHSQCIQK 105 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~ 105 (135)
...|.+|.+.+.... .+. -..|+=..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~-C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLR-CSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcC-CCCCCchHHHHHHhh
Confidence 457999999886532 232 334888899999876
No 311
>PF13994 PgaD: PgaD-like protein
Probab=29.13 E-value=1.2e+02 Score=19.73 Aligned_cols=9 Identities=22% Similarity=0.036 Sum_probs=3.6
Q ss_pred CCCHHHHhh
Q 047778 48 KPSAEAAAA 56 (135)
Q Consensus 48 ~~~~~~~~~ 56 (135)
+.+.+.+..
T Consensus 111 ~l~~~~l~~ 119 (138)
T PF13994_consen 111 GLSPEQLQQ 119 (138)
T ss_pred CCCHHHHHH
Confidence 344444333
No 312
>PHA02975 hypothetical protein; Provisional
Probab=29.04 E-value=79 Score=18.27 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 047778 6 TCALALNTAIRCF 18 (135)
Q Consensus 6 ~~~~~l~~~~~~~ 18 (135)
++++.++++...|
T Consensus 52 ~~v~~~~~~~flY 64 (69)
T PHA02975 52 IFITCIAVFTFLY 64 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 313
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=28.93 E-value=24 Score=26.45 Aligned_cols=30 Identities=30% Similarity=0.759 Sum_probs=21.8
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHH
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQ 104 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 104 (135)
.|.||+.+-...+.+. ..-|.-.||.-|+.
T Consensus 316 lC~IC~~P~~E~E~~F-CD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLF-CDVCDRGPHTLCVG 345 (381)
T ss_pred hhhccCCcccchheec-cccccCCCCccccc
Confidence 4889998876655553 33488889988874
No 314
>PF15240 Pro-rich: Proline-rich
Probab=28.49 E-value=47 Score=23.05 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=4.6
Q ss_pred hHHHHHHHHHH
Q 047778 2 FCALTCALALN 12 (135)
Q Consensus 2 l~~~~~~~~l~ 12 (135)
|+|||.|.+|+
T Consensus 2 LlVLLSvALLA 12 (179)
T PF15240_consen 2 LLVLLSVALLA 12 (179)
T ss_pred hhHHHHHHHHH
Confidence 44444443333
No 315
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.28 E-value=64 Score=21.56 Aligned_cols=17 Identities=18% Similarity=-0.009 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047778 4 ALTCALALNTAIRCFLR 20 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~ 20 (135)
.++.+++|++++.+|++
T Consensus 14 ~~i~Flil~~ll~~~l~ 30 (164)
T PRK14471 14 QTILFLILLLLLAKFAW 30 (164)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 34444445555544443
No 316
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=28.26 E-value=49 Score=25.22 Aligned_cols=43 Identities=5% Similarity=-0.174 Sum_probs=29.0
Q ss_pred cccccccccccCCCeEEEcCCCCC-cccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKH-GFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
.+|..|-+.... ....+ |+| .|+.+|.. +....+||+|-+...
T Consensus 344 ~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 344 LKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred cccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccce
Confidence 457777665432 23444 998 59999987 456678999976543
No 317
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=28.07 E-value=53 Score=17.22 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=22.6
Q ss_pred Cccccccccccc--cCCCeEEEcCCCCCcccHHHHHH
Q 047778 71 AEAECVICLSEF--VEGDVIQVLERCKHGFHSQCIQK 105 (135)
Q Consensus 71 ~~~~C~ICl~~~--~~~~~~~~l~~C~H~fh~~Ci~~ 105 (135)
....|.+|-+.+ ......+=. .|+-..|.+|+..
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~-~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCS-WCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEET-TTT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEEC-CCCChHhhhhhhh
Confidence 346899999988 333445444 4999999999765
No 318
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=28.02 E-value=18 Score=29.46 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=44.4
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
.....|.+|+......+...++..|.|.+...|+..|=.....|+.|+..+..
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~ 310 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRT 310 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccc
Confidence 34567999999988877777887789999999999998777889999876654
No 319
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.01 E-value=1e+02 Score=17.98 Aligned_cols=9 Identities=11% Similarity=0.098 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q 047778 14 AIRCFLRDN 22 (135)
Q Consensus 14 ~~~~~~~~~ 22 (135)
+..+|+.|+
T Consensus 19 ~~G~fiark 27 (71)
T COG3763 19 IGGFFIARK 27 (71)
T ss_pred HHHHHHHHH
Confidence 344444444
No 320
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=27.98 E-value=69 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047778 3 CALTCALALNTAIRCFLR 20 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (135)
+.++.+++|++++..|++
T Consensus 12 ~qli~Flil~~~l~kfl~ 29 (141)
T PRK08476 12 ATFVVFLLLIVILNSWLY 29 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 321
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=27.97 E-value=95 Score=21.92 Aligned_cols=22 Identities=5% Similarity=-0.105 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc
Q 047778 4 ALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
+..++.++.+++.+++.++.+.
T Consensus 132 l~a~vgGfamy~my~y~yr~~a 153 (226)
T COG4858 132 LTAVVGGFAMYIMYYYAYRMRA 153 (226)
T ss_pred HHHHhhhHHHHHHHHHHHHhhc
Confidence 3444555555555555555444
No 322
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=27.97 E-value=58 Score=20.57 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 047778 5 LTCALALNTAIRCFL 19 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~ 19 (135)
++.+++|++++.+|+
T Consensus 6 ~i~Flil~~~l~~~~ 20 (132)
T PF00430_consen 6 LINFLILFFLLNKFL 20 (132)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 323
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=27.91 E-value=56 Score=20.88 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 047778 2 FCALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
++++++.++|+.++.+++.....
T Consensus 68 ii~LivSLaLVsFvIFLiiQTgn 90 (128)
T PF15145_consen 68 IIVLIVSLALVSFVIFLIIQTGN 90 (128)
T ss_pred HHHHHHHHHHHHHHHHheeeccc
Confidence 44556666666666555554443
No 324
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=27.76 E-value=25 Score=19.55 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=4.2
Q ss_pred CcccccccccC
Q 047778 112 SCPICRCNCLF 122 (135)
Q Consensus 112 ~CP~Cr~~~~~ 122 (135)
.||+|++.+..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 46666665554
No 325
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.73 E-value=28 Score=29.44 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=24.2
Q ss_pred EEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 88 IQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 88 ~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+...|.|.-+||.+=.+--..++.-||.||.+..
T Consensus 1044 it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1044 ITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 3445567777777666665567788999998765
No 326
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.68 E-value=68 Score=21.79 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047778 4 ALTCALALNTAIRCFLR 20 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~ 20 (135)
.++.+++|++++.+|++
T Consensus 24 ~iInFliL~~lL~~~l~ 40 (173)
T PRK13453 24 TVLTFIVLLALLKKFAW 40 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555544443
No 327
>KOG4268 consensus Uncharacterized conserved protein containing PAP2 domain [Function unknown]
Probab=27.65 E-value=83 Score=21.53 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
+.++++=+.++.++..+++|+|..
T Consensus 70 lLgLlfDli~vaivk~~f~R~rP~ 93 (189)
T KOG4268|consen 70 LLGLLFDLITVAIVKKLFKRRRPY 93 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc
Confidence 456677777888888888887755
No 328
>PHA03286 envelope glycoprotein E; Provisional
Probab=27.58 E-value=61 Score=25.93 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 047778 6 TCALALNTAIRCFLRDNN 23 (135)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~ 23 (135)
++++.+.+.+.++++|++
T Consensus 402 ~~~~~~~~~~~~~~~r~~ 419 (492)
T PHA03286 402 LVVLLFALCIAGLYRRRR 419 (492)
T ss_pred HHHHHHHHHhHhHhhhhh
Confidence 333333333334444333
No 329
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=27.54 E-value=69 Score=25.33 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcC
Q 047778 1 LFCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 1 ll~~~~~~~~l~~~~~~~~~~~~ 23 (135)
+++++++.++|.++..+++.+.+
T Consensus 70 FfvaflvslVL~~l~~f~l~r~~ 92 (429)
T PF12297_consen 70 FFVAFLVSLVLTWLCFFLLARTR 92 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35667777777777766665544
No 330
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.07 E-value=99 Score=25.08 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCCCC
Q 047778 6 TCALALNTAIRCFLRDNNNYDQQRRTPSPSP 36 (135)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (135)
++++.+..++.+++++...++.+++.+.+.+
T Consensus 8 ~l~~~l~~l~y~~~~~~~~yw~rrGi~~~~p 38 (499)
T KOG0158|consen 8 LLLILLLVLLYLWLRWTYSYWRRRGIPGPKP 38 (499)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCC
Confidence 3333333455555566655655555444333
No 331
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=27.04 E-value=90 Score=18.99 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047778 3 CALTCALALNTAIRCFLR 20 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (135)
.+-+++++|++++.+|+.
T Consensus 38 m~~lm~~Gl~WlvvyYl~ 55 (87)
T PRK02251 38 FVALMIIGLIWLVVYYLS 55 (87)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 445677888888888874
No 332
>PRK11595 DNA utilization protein GntX; Provisional
Probab=26.93 E-value=52 Score=23.39 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=20.7
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNC 120 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (135)
..|.+|-..+..+ ...+|..|...|-.....||.|-.++
T Consensus 6 ~~C~~C~~~~~~~---------~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 6 GLCWLCRMPLALS---------HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred CcCccCCCccCCC---------CCcccHHHHhhCCcccCcCccCCCcC
Confidence 3577776654321 12256667666532234577776543
No 333
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=26.89 E-value=77 Score=14.46 Aligned_cols=19 Identities=21% Similarity=-0.040 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 047778 3 CALTCALALNTAIRCFLRD 21 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~ 21 (135)
++.++++++..+..+.+.+
T Consensus 3 l~~~v~~~L~~YL~~aLl~ 21 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLR 21 (25)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455555555555555544
No 334
>PF14353 CpXC: CpXC protein
Probab=26.88 E-value=54 Score=20.92 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=6.9
Q ss_pred cccccccccccC
Q 047778 73 AECVICLSEFVE 84 (135)
Q Consensus 73 ~~C~ICl~~~~~ 84 (135)
.+|+-|...|..
T Consensus 2 itCP~C~~~~~~ 13 (128)
T PF14353_consen 2 ITCPHCGHEFEF 13 (128)
T ss_pred cCCCCCCCeeEE
Confidence 356666666544
No 335
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.86 E-value=86 Score=21.01 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.3
Q ss_pred HHHhhc
Q 047778 17 CFLRDN 22 (135)
Q Consensus 17 ~~~~~~ 22 (135)
.|+|.|
T Consensus 36 ~Y~r~r 41 (149)
T PF11694_consen 36 KYLRNR 41 (149)
T ss_pred HHHHhc
Confidence 334333
No 336
>PRK00420 hypothetical protein; Validated
Probab=26.78 E-value=53 Score=20.96 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 047778 73 AECVICLSEFV 83 (135)
Q Consensus 73 ~~C~ICl~~~~ 83 (135)
..||.|-.++.
T Consensus 24 ~~CP~Cg~pLf 34 (112)
T PRK00420 24 KHCPVCGLPLF 34 (112)
T ss_pred CCCCCCCCcce
Confidence 67888877654
No 337
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=26.70 E-value=72 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 047778 5 LTCALALNTAIRCF 18 (135)
Q Consensus 5 ~~~~~~l~~~~~~~ 18 (135)
++.+++|++++..|
T Consensus 38 lI~F~iL~~ll~k~ 51 (181)
T PRK13454 38 LVTLVAIYFVLTRV 51 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 338
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=26.27 E-value=1.6e+02 Score=19.51 Aligned_cols=11 Identities=9% Similarity=-0.239 Sum_probs=4.7
Q ss_pred CCCCHHHHhhC
Q 047778 47 NKPSAEAAAAH 57 (135)
Q Consensus 47 ~~~~~~~~~~~ 57 (135)
-+.+.+....+
T Consensus 99 f~is~el~~qL 109 (137)
T PRK14585 99 LAIPDELYQQL 109 (137)
T ss_pred cCCCHHHHHHH
Confidence 34444444433
No 339
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=26.22 E-value=60 Score=17.98 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=13.7
Q ss_pred cccccccccCCCeEEEcCCCCCcccHH
Q 047778 75 CVICLSEFVEGDVIQVLERCKHGFHSQ 101 (135)
Q Consensus 75 C~ICl~~~~~~~~~~~l~~C~H~fh~~ 101 (135)
|..|... .++...=|. ||++++..
T Consensus 1 C~~C~~~--~~~lw~CL~-Cg~~~C~~ 24 (63)
T PF02148_consen 1 CSVCGST--NSNLWLCLT-CGYVGCGR 24 (63)
T ss_dssp -SSSHTC--SSSEEEETT-TS-EEETT
T ss_pred CCCCCCc--CCceEEeCC-CCcccccC
Confidence 4556644 234455666 99999874
No 340
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=26.21 E-value=44 Score=28.86 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=24.3
Q ss_pred cccccccccccCCC---eEEE--cCCCCCcccHHHHHHHH
Q 047778 73 AECVICLSEFVEGD---VIQV--LERCKHGFHSQCIQKWL 107 (135)
Q Consensus 73 ~~C~ICl~~~~~~~---~~~~--l~~C~H~fh~~Ci~~wl 107 (135)
+.|..|-..|..-. ..+. ...||.+||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 57999999995321 1122 33699999999987654
No 341
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=26.13 E-value=1.4e+02 Score=18.07 Aligned_cols=17 Identities=18% Similarity=-0.009 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047778 4 ALTCALALNTAIRCFLR 20 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~ 20 (135)
++++.+.|++.+++.-.
T Consensus 21 VflfL~iLi~~~~~m~~ 37 (84)
T COG3630 21 VFLFLSILIYAMRGMGA 37 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555544433
No 342
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=25.79 E-value=72 Score=17.61 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 047778 3 CALTCALALNTAIR 16 (135)
Q Consensus 3 ~~~~~~~~l~~~~~ 16 (135)
.+++++++|+.+++
T Consensus 40 ~~~~fV~~Lv~lV~ 53 (56)
T PF11174_consen 40 LAALFVAGLVLLVN 53 (56)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 343
>PF14851 FAM176: FAM176 family
Probab=25.68 E-value=1.1e+02 Score=20.59 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 047778 3 CALTCALALNT 13 (135)
Q Consensus 3 ~~~~~~~~l~~ 13 (135)
|++.+.+||++
T Consensus 26 Fv~gVC~GLlL 36 (153)
T PF14851_consen 26 FVSGVCAGLLL 36 (153)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 344
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=25.63 E-value=27 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.653 Sum_probs=20.5
Q ss_pred CCC-CcccHHHHHHHH--hcCCCcccccccc
Q 047778 93 RCK-HGFHSQCIQKWL--YSHYSCPICRCNC 120 (135)
Q Consensus 93 ~C~-H~fh~~Ci~~wl--~~~~~CP~Cr~~~ 120 (135)
+|. -.||..|+.--. ..+..||-|+...
T Consensus 239 ~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 239 GCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 477 789999997643 3445799998654
No 345
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.53 E-value=33 Score=30.32 Aligned_cols=37 Identities=30% Similarity=0.641 Sum_probs=27.2
Q ss_pred CCCCccccccccccccCC-CeEEEcCCCCCcccHHHHH
Q 047778 68 LTGAEAECVICLSEFVEG-DVIQVLERCKHGFHSQCIQ 104 (135)
Q Consensus 68 ~~~~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~ 104 (135)
..+.+..|.||++-=... ..+.....|+=..|.+|..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 345678899999975442 3445566799999999987
No 346
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=25.38 E-value=1e+02 Score=19.16 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047778 3 CALTCALALNTAIRCFLR 20 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (135)
+.++++++|.+-+.+++|
T Consensus 26 asVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 26 ASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555566665555554
No 347
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=25.34 E-value=95 Score=22.00 Aligned_cols=8 Identities=0% Similarity=0.011 Sum_probs=3.2
Q ss_pred HHHhhcCC
Q 047778 17 CFLRDNNN 24 (135)
Q Consensus 17 ~~~~~~~~ 24 (135)
|++..||.
T Consensus 122 Y~~~~Rrs 129 (202)
T PF06365_consen 122 YCCHQRRS 129 (202)
T ss_pred HHhhhhcc
Confidence 34444443
No 348
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=25.25 E-value=13 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.463 Sum_probs=18.5
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQ 104 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 104 (135)
..|+-|.+-+-..+.|+.- =.|+||.+|+.
T Consensus 93 TKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~ 122 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQVVRKA--QDFVYHLHCFA 122 (383)
T ss_pred CcchhhcCCCChHHHHHHh--hcceeehhhhh
Confidence 4577777666544444433 56888888854
No 349
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=25.13 E-value=42 Score=16.09 Aligned_cols=9 Identities=33% Similarity=1.302 Sum_probs=5.8
Q ss_pred CCCcccccc
Q 047778 110 HYSCPICRC 118 (135)
Q Consensus 110 ~~~CP~Cr~ 118 (135)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 346888854
No 350
>PHA03281 envelope glycoprotein E; Provisional
Probab=25.08 E-value=71 Score=26.25 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 047778 5 LTCALALNTAIRCFLR 20 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~ 20 (135)
++++++++++.+.|.+
T Consensus 569 l~l~~~~~c~~~~~~~ 584 (642)
T PHA03281 569 LCLAIALICTAKKFGH 584 (642)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3334444444444443
No 351
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.94 E-value=71 Score=19.72 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 047778 6 TCALALNTAIRCF 18 (135)
Q Consensus 6 ~~~~~l~~~~~~~ 18 (135)
+++++++.++.|.
T Consensus 52 iLilIii~Lv~CC 64 (98)
T PF07204_consen 52 ILILIIIALVCCC 64 (98)
T ss_pred hhHHHHHHHHHHh
Confidence 3333333333333
No 352
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.92 E-value=83 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 047778 5 LTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~ 25 (135)
++++++|.+++.||.||+-..
T Consensus 283 ~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 283 ALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHhhhcccCC
Confidence 344445555555666655433
No 353
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=24.89 E-value=81 Score=23.42 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047778 2 FCALTCALALNTAIRCFL 19 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~ 19 (135)
+++|+++|+|.+|+.+|.
T Consensus 175 ~lALflAFaINFILLFYK 192 (274)
T PF06459_consen 175 FLALFLAFAINFILLFYK 192 (274)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467888888888885553
No 354
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=24.66 E-value=1.4e+02 Score=17.86 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047778 4 ALTCALALNTAIRCFLR 20 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~ 20 (135)
+++|...|++.+.+.-+
T Consensus 21 VfvFL~lLI~~i~~ms~ 37 (82)
T PRK02919 21 VLAFLFLLIFAIRGMSA 37 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.56 E-value=53 Score=23.27 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=11.0
Q ss_pred ccccccccccccC
Q 047778 72 EAECVICLSEFVE 84 (135)
Q Consensus 72 ~~~C~ICl~~~~~ 84 (135)
...||+|-.+|..
T Consensus 5 ~~~CPvC~~~F~~ 17 (214)
T PF09986_consen 5 KITCPVCGKEFKT 17 (214)
T ss_pred ceECCCCCCeeee
Confidence 4689999999976
No 356
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=24.39 E-value=88 Score=26.38 Aligned_cols=11 Identities=0% Similarity=-0.333 Sum_probs=4.3
Q ss_pred HHHHHhhcCCc
Q 047778 15 IRCFLRDNNNY 25 (135)
Q Consensus 15 ~~~~~~~~~~~ 25 (135)
..++++|.+++
T Consensus 19 ~~~~~~r~~r~ 29 (705)
T PF07095_consen 19 GSFLWFRMRRR 29 (705)
T ss_pred HHHHHHHhccC
Confidence 33333344433
No 357
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=24.33 E-value=61 Score=17.97 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=9.1
Q ss_pred ccHHHHHHHHh
Q 047778 98 FHSQCIQKWLY 108 (135)
Q Consensus 98 fh~~Ci~~wl~ 108 (135)
.|..|+..||.
T Consensus 34 ~Ce~C~~E~l~ 44 (58)
T PF05810_consen 34 VCEECCAEWLV 44 (58)
T ss_pred HHHHHHHHHHh
Confidence 56789999985
No 358
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=24.13 E-value=86 Score=21.24 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 047778 5 LTCALALNTAIRCFLR 20 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~ 20 (135)
++.+++|++++++|++
T Consensus 23 ~i~Flil~~iL~~~~~ 38 (173)
T PRK13460 23 LVTFLVVVLVLKKFAW 38 (173)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4444444555544443
No 359
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=23.84 E-value=1.1e+02 Score=18.57 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047778 3 CALTCALALNTAIRCFLR 20 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (135)
.+-+++++|++++.+|+.
T Consensus 37 m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 37 MLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345677888888888874
No 360
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=23.71 E-value=80 Score=18.00 Aligned_cols=17 Identities=24% Similarity=-0.062 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 047778 2 FCALTCALALNTAIRCF 18 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~ 18 (135)
..+++.++++++.+++.
T Consensus 35 gwIL~gvf~liw~ly~~ 51 (67)
T PLN00082 35 TWILVGVTALIWALYFS 51 (67)
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 45677788888877444
No 361
>PRK14762 membrane protein; Provisional
Probab=23.51 E-value=92 Score=14.21 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 047778 4 ALTCALALNTA 14 (135)
Q Consensus 4 ~~~~~~~l~~~ 14 (135)
++++.++|..+
T Consensus 9 ~iifligllvv 19 (27)
T PRK14762 9 LIIFLIGLLVV 19 (27)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 362
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=23.38 E-value=1.8e+02 Score=18.24 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 047778 5 LTCALALNTAIRCFLRDN 22 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~ 22 (135)
+.++..+++++.|++|-+
T Consensus 58 ~~~~w~~~A~~ly~~RP~ 75 (103)
T PF11027_consen 58 MMMLWMVLAMALYLLRPS 75 (103)
T ss_pred HHHHHHHHHHHHHHcCch
Confidence 333444444444444433
No 363
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.31 E-value=99 Score=21.60 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 047778 3 CALTCALALNTAIRCFLRD 21 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~ 21 (135)
+++++++++.+++.|++.+
T Consensus 4 i~~i~~~~vG~~~G~~~~~ 22 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRK 22 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 364
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=23.20 E-value=29 Score=16.19 Aligned_cols=10 Identities=30% Similarity=1.178 Sum_probs=5.2
Q ss_pred Cccccccccc
Q 047778 112 SCPICRCNCL 121 (135)
Q Consensus 112 ~CP~Cr~~~~ 121 (135)
.||.|-+.+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4888887776
No 365
>PLN03112 cytochrome P450 family protein; Provisional
Probab=23.12 E-value=1.5e+02 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 047778 3 CALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~ 24 (135)
.+++.++.+.+++..+++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (514)
T PLN03112 7 SLLFSVLIFNVLIWRWLNASMR 28 (514)
T ss_pred HHHHHHHHHHHHHHHHcccccc
Confidence 3344444444444444444333
No 366
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.06 E-value=91 Score=21.12 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 047778 5 LTCALALNTAIRCFL 19 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~ 19 (135)
++.+++|++++++|+
T Consensus 25 ~i~Flil~~lL~~~l 39 (175)
T PRK14472 25 AVTFVIVLLILKKIA 39 (175)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444454444
No 367
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.77 E-value=91 Score=24.17 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=10.1
Q ss_pred CCcccccccccccc
Q 047778 70 GAEAECVICLSEFV 83 (135)
Q Consensus 70 ~~~~~C~ICl~~~~ 83 (135)
..++.|++|-+...
T Consensus 13 dl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccCccc
Confidence 34578999988753
No 368
>PF05353 Atracotoxin: Delta Atracotoxin; InterPro: IPR008017 Delta atracotoxin produces potentially fatal neurotoxic symptoms in primates by slowing the inactivation of voltage-gated sodium channels []. The structure of atracotoxin comprises a core beta region containing a triple-stranded a thumb-like extension protruding from the beta region and a C-terminal helix. The beta region contains a cystine knot motif, a feature seen in other neurotoxic polypeptides [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2ROO_A 1VTX_A 1QDP_A.
Probab=22.77 E-value=4.6 Score=20.64 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCCcc
Q 047778 101 QCIQKWLYSHYSCP 114 (135)
Q Consensus 101 ~Ci~~wl~~~~~CP 114 (135)
.||..|++.+.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (42)
T PF05353_consen 19 KCIYAWYNQQSSCQ 32 (42)
T ss_dssp EEEE-SSGSTEEEE
T ss_pred HHHHHHHccCCchH
Confidence 58888988877774
No 369
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=22.41 E-value=1e+02 Score=16.23 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 047778 2 FCALTCALALNTAIRC 17 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~ 17 (135)
+.+++.++.+.++.+.
T Consensus 30 i~aviGAiill~i~~~ 45 (48)
T PF04226_consen 30 IVAVIGAIILLFIYRL 45 (48)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 370
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=22.26 E-value=1.9e+02 Score=19.57 Aligned_cols=7 Identities=29% Similarity=0.069 Sum_probs=2.7
Q ss_pred CCCHHHH
Q 047778 48 KPSAEAA 54 (135)
Q Consensus 48 ~~~~~~~ 54 (135)
+.+.+.+
T Consensus 109 ~l~~e~i 115 (153)
T PRK14584 109 ALSPELI 115 (153)
T ss_pred CCCHHHH
Confidence 3344433
No 371
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=22.26 E-value=98 Score=23.40 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 047778 3 CALTCALALNTAIRCF 18 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~ 18 (135)
.+++++++|+.++..=
T Consensus 8 LIIvG~IAIiaLLvhG 23 (324)
T COG3115 8 LIIVGAIAIIALLVHG 23 (324)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444455555544443
No 372
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=1e+02 Score=20.49 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 047778 5 LTCALALNTAIRCFLR 20 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~ 20 (135)
++.+++|++++.+|++
T Consensus 12 ~inF~il~~iL~~f~~ 27 (159)
T PRK13461 12 IINFIILLLILKHFFF 27 (159)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3444444444544443
No 373
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=21.76 E-value=55 Score=17.27 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=19.8
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHH
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL 107 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 107 (135)
.|.||-+.-.+| +. + .|..+|.+|-..-.
T Consensus 1 ~CiiC~~~~~~G--I~-I--~~~fIC~~CE~~iv 29 (46)
T PF10764_consen 1 KCIICGKEKEEG--IH-I--YGKFICSDCEKEIV 29 (46)
T ss_pred CeEeCCCcCCCC--EE-E--ECeEehHHHHHHhc
Confidence 378888886665 22 2 67778888876654
No 374
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=21.59 E-value=38 Score=17.07 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=8.1
Q ss_pred CcccccccccCC
Q 047778 112 SCPICRCNCLFS 123 (135)
Q Consensus 112 ~CP~Cr~~~~~~ 123 (135)
.||.|+..+...
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 388888765543
No 375
>PF15025 DUF4524: Domain of unknown function (DUF4524)
Probab=21.40 E-value=73 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=11.2
Q ss_pred ccCCCeEEEcCCCCCcc
Q 047778 82 FVEGDVIQVLERCKHGF 98 (135)
Q Consensus 82 ~~~~~~~~~l~~C~H~f 98 (135)
|.++..+.+.| ||+.|
T Consensus 14 f~Dgs~l~Lsp-cGs~f 29 (148)
T PF15025_consen 14 FSDGSRLQLSP-CGSEF 29 (148)
T ss_pred EcCCCEEEEcC-CCccE
Confidence 55666776776 99864
No 376
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.30 E-value=96 Score=21.85 Aligned_cols=14 Identities=0% Similarity=-0.306 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 047778 5 LTCALALNTAIRCF 18 (135)
Q Consensus 5 ~~~~~~l~~~~~~~ 18 (135)
+|.+++|++++..+
T Consensus 60 ~I~FliL~~lL~k~ 73 (204)
T PRK09174 60 AITFGLFYLFMSRV 73 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 377
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=21.27 E-value=80 Score=22.29 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=16.0
Q ss_pred CCCccccccccccccCCCeEEE
Q 047778 69 TGAEAECVICLSEFVEGDVIQV 90 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~ 90 (135)
..+.+.|.||.++..+...+.+
T Consensus 63 ~te~d~C~ICsd~~Rd~~~icV 84 (198)
T COG0353 63 LTESDPCDICSDESRDKSQLCV 84 (198)
T ss_pred cCCCCcCcCcCCcccCCceEEE
Confidence 3456799999999888764443
No 378
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.25 E-value=1.1e+02 Score=20.46 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 047778 5 LTCALALNTAIRCFLR 20 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~ 20 (135)
++-+++|++++++|++
T Consensus 15 ~inflil~~lL~~fl~ 30 (164)
T PRK14473 15 LINFLLLIFLLRTFLY 30 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555544
No 379
>PHA02291 hypothetical protein
Probab=21.24 E-value=1.2e+02 Score=19.22 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 047778 2 FCALTCALALNTAIRCFLR 20 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~ 20 (135)
+-++++++++..+..+++.
T Consensus 8 FYiL~~~VL~~si~sY~~s 26 (132)
T PHA02291 8 FYILVVIVLAFSISSYYIS 26 (132)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4455555555555555543
No 380
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=21.24 E-value=1.6e+02 Score=15.98 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 047778 6 TCALALNTAI 15 (135)
Q Consensus 6 ~~~~~l~~~~ 15 (135)
+++.+++.++
T Consensus 35 ~~~~~l~~~~ 44 (55)
T PF03988_consen 35 IFAALLAVVL 44 (55)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 381
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=20.89 E-value=68 Score=16.28 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=22.9
Q ss_pred ccccccccccccCC--CeEEEcCCCCCcccHHHHHH
Q 047778 72 EAECVICLSEFVEG--DVIQVLERCKHGFHSQCIQK 105 (135)
Q Consensus 72 ~~~C~ICl~~~~~~--~~~~~l~~C~H~fh~~Ci~~ 105 (135)
...|.+|.+.+... ...+ -..|+=..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~-C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLR-CSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeE-cCCCCCchhhhhhcc
Confidence 45799999887652 2333 334888999999765
No 382
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=20.84 E-value=1e+02 Score=23.97 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 047778 2 FCALTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~ 23 (135)
.+++++++++++.+.|.+||-.
T Consensus 27 ~~aL~~VlalI~~~aWLlRR~~ 48 (379)
T PRK12430 27 MSSLFEIILLILILSWILKKIS 48 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567777888877777777654
No 383
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.70 E-value=1.4e+02 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 047778 5 LTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~~~ 25 (135)
+..+.++.++-.|++...+|+
T Consensus 14 ~agiag~af~gYciYFd~KRr 34 (143)
T KOG4056|consen 14 AAGIAGLAFIGYCIYFDKKRR 34 (143)
T ss_pred HHHHHHHHHHHHHhhcccccc
Confidence 333444444444444444443
No 384
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=20.36 E-value=75 Score=18.68 Aligned_cols=12 Identities=50% Similarity=0.611 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 047778 4 ALTCALALNTAI 15 (135)
Q Consensus 4 ~~~~~~~l~~~~ 15 (135)
.++++++++..+
T Consensus 40 L~LCiLvl~yai 51 (74)
T PF11857_consen 40 LLLCILVLIYAI 51 (74)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 385
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=20.30 E-value=1.3e+02 Score=21.97 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=5.9
Q ss_pred HHHHHhcCCC
Q 047778 103 IQKWLYSHYS 112 (135)
Q Consensus 103 i~~wl~~~~~ 112 (135)
.+.|+.....
T Consensus 216 f~~W~~~~~~ 225 (247)
T COG1622 216 FDAWVAEVKA 225 (247)
T ss_pred HHHHHHhhhh
Confidence 6777754433
No 386
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=20.14 E-value=1.3e+02 Score=19.35 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 047778 5 LTCALALNTAIRCFLR 20 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~ 20 (135)
++-++.|++++..|++
T Consensus 12 ~i~flil~~ll~~~l~ 27 (140)
T PRK07353 12 AVQFVLLTFILNALFY 27 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
Done!