Query 047778
Match_columns 135
No_of_seqs 218 out of 1689
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 2.1E-21 7E-26 119.2 6.4 78 44-122 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 5.8E-20 2E-24 108.8 3.1 69 54-124 6-74 (75)
3 2ep4_A Ring finger protein 24; 99.8 1.2E-18 4.1E-23 102.7 6.7 58 69-127 12-69 (74)
4 2kiz_A E3 ubiquitin-protein li 99.8 1.5E-18 5.1E-23 101.0 6.6 56 69-125 11-66 (69)
5 2ect_A Ring finger protein 126 99.8 9.2E-19 3.1E-23 104.2 5.8 61 69-130 12-72 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.8 4.7E-19 1.6E-23 98.7 3.5 52 70-121 3-54 (55)
7 2ecl_A Ring-box protein 2; RNF 99.7 5.7E-18 2E-22 101.6 4.7 54 70-123 13-77 (81)
8 1v87_A Deltex protein 2; ring- 99.7 3.6E-17 1.2E-21 103.9 6.7 58 71-129 24-101 (114)
9 2d8s_A Cellular modulator of i 99.7 6.8E-17 2.3E-21 96.6 5.3 62 66-129 9-77 (80)
10 3ng2_A RNF4, snurf, ring finge 99.7 4.8E-17 1.6E-21 94.9 4.4 55 69-124 7-65 (71)
11 2ecm_A Ring finger and CHY zin 99.7 3.8E-17 1.3E-21 90.8 3.6 51 70-121 3-54 (55)
12 2ea6_A Ring finger protein 4; 99.7 6.9E-17 2.4E-21 93.6 4.2 53 69-122 12-68 (69)
13 2djb_A Polycomb group ring fin 99.6 3.5E-16 1.2E-20 91.6 6.8 58 69-129 12-69 (72)
14 3dpl_R Ring-box protein 1; ubi 99.6 1.1E-16 3.8E-21 100.5 4.3 53 70-123 35-102 (106)
15 2xeu_A Ring finger protein 4; 99.6 1.2E-16 3.9E-21 91.4 3.6 52 71-123 2-57 (64)
16 2ecn_A Ring finger protein 141 99.6 1.8E-16 6.3E-21 92.3 4.0 54 69-127 12-65 (70)
17 2d8t_A Dactylidin, ring finger 99.6 1.1E-16 3.8E-21 93.5 2.2 53 70-126 13-65 (71)
18 1chc_A Equine herpes virus-1 r 99.6 7.3E-16 2.5E-20 89.2 3.9 50 70-122 3-52 (68)
19 2ct2_A Tripartite motif protei 99.6 2.4E-15 8.1E-20 91.1 5.8 54 69-123 12-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.6 2.2E-16 7.5E-21 100.5 0.5 54 70-123 46-113 (117)
21 2yur_A Retinoblastoma-binding 99.6 3.3E-15 1.1E-19 87.9 5.3 53 69-124 12-66 (74)
22 2csy_A Zinc finger protein 183 99.6 2.9E-15 9.8E-20 89.6 4.9 48 70-121 13-60 (81)
23 2ct0_A Non-SMC element 1 homol 99.6 4.2E-15 1.5E-19 87.2 5.5 58 70-130 13-72 (74)
24 2ecy_A TNF receptor-associated 99.5 5.5E-15 1.9E-19 85.0 4.9 50 70-123 13-63 (66)
25 2ysl_A Tripartite motif-contai 99.5 6.1E-15 2.1E-19 86.3 4.9 51 69-123 17-70 (73)
26 4ayc_A E3 ubiquitin-protein li 99.5 2.5E-15 8.6E-20 98.5 3.0 49 71-123 52-100 (138)
27 1g25_A CDK-activating kinase a 99.5 1.2E-14 4.1E-19 83.3 4.4 53 71-124 2-57 (65)
28 1t1h_A Gspef-atpub14, armadill 99.5 1.5E-14 5.1E-19 85.8 4.7 51 69-123 5-56 (78)
29 4ap4_A E3 ubiquitin ligase RNF 99.5 8.6E-15 2.9E-19 94.7 3.9 54 70-124 5-62 (133)
30 2ecw_A Tripartite motif-contai 99.5 3.8E-14 1.3E-18 85.0 5.7 51 69-123 16-72 (85)
31 2ysj_A Tripartite motif-contai 99.5 4.2E-14 1.5E-18 80.5 5.3 44 69-116 17-63 (63)
32 3lrq_A E3 ubiquitin-protein li 99.5 1.1E-14 3.9E-19 90.4 3.1 49 71-123 21-71 (100)
33 2egp_A Tripartite motif-contai 99.5 8.5E-15 2.9E-19 86.9 1.9 51 69-123 9-66 (79)
34 3ztg_A E3 ubiquitin-protein li 99.5 4.6E-14 1.6E-18 86.2 4.9 50 69-121 10-61 (92)
35 2y43_A E3 ubiquitin-protein li 99.5 2.6E-14 8.9E-19 88.5 3.6 49 71-122 21-69 (99)
36 2ecv_A Tripartite motif-contai 99.5 5.1E-14 1.7E-18 84.4 4.7 51 69-123 16-72 (85)
37 2ecj_A Tripartite motif-contai 99.4 5.7E-14 2E-18 78.5 3.9 44 69-116 12-58 (58)
38 2ckl_A Polycomb group ring fin 99.4 5.6E-14 1.9E-18 88.3 4.1 51 70-123 13-63 (108)
39 3fl2_A E3 ubiquitin-protein li 99.4 6.7E-14 2.3E-18 90.0 4.5 49 71-123 51-100 (124)
40 4ap4_A E3 ubiquitin ligase RNF 99.4 1.1E-13 3.7E-18 89.5 3.8 53 70-123 70-126 (133)
41 2ckl_B Ubiquitin ligase protei 99.4 2E-13 6.9E-18 91.8 5.1 49 71-122 53-102 (165)
42 1e4u_A Transcriptional repress 99.4 3.8E-13 1.3E-17 79.8 4.5 55 69-124 8-64 (78)
43 3hct_A TNF receptor-associated 99.4 2.9E-13 9.8E-18 86.4 3.7 51 69-123 15-66 (118)
44 1jm7_A BRCA1, breast cancer ty 99.4 3.2E-13 1.1E-17 85.1 3.7 49 71-123 20-71 (112)
45 1z6u_A NP95-like ring finger p 99.4 4.3E-13 1.5E-17 89.0 4.3 49 71-123 77-126 (150)
46 3l11_A E3 ubiquitin-protein li 99.4 8.8E-14 3E-18 88.3 0.8 49 70-122 13-62 (115)
47 1rmd_A RAG1; V(D)J recombinati 99.3 4E-13 1.4E-17 85.4 3.2 50 71-124 22-72 (116)
48 3knv_A TNF receptor-associated 99.3 4.9E-13 1.7E-17 87.9 3.3 51 69-123 28-79 (141)
49 2vje_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 76.5 2.7 49 70-121 6-56 (64)
50 2kr4_A Ubiquitin conjugation f 99.3 1.7E-12 5.7E-17 78.3 4.7 50 70-123 12-61 (85)
51 1bor_A Transcription factor PM 99.3 4.5E-13 1.5E-17 74.6 1.9 49 70-125 4-52 (56)
52 2vje_B MDM4 protein; proto-onc 99.3 9.6E-13 3.3E-17 75.0 2.7 50 70-121 5-55 (63)
53 2kre_A Ubiquitin conjugation f 99.3 3.1E-12 1.1E-16 79.3 4.5 50 70-123 27-76 (100)
54 2y1n_A E3 ubiquitin-protein li 99.3 1.7E-12 5.9E-17 97.4 3.7 50 71-124 331-381 (389)
55 1wgm_A Ubiquitin conjugation f 99.3 5.5E-12 1.9E-16 77.9 4.9 50 70-123 20-70 (98)
56 1jm7_B BARD1, BRCA1-associated 99.2 2.2E-12 7.6E-17 82.1 1.3 46 71-122 21-67 (117)
57 4ic3_A E3 ubiquitin-protein li 99.2 3.8E-12 1.3E-16 74.7 1.3 44 71-122 23-67 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 99.2 3.7E-12 1.3E-16 93.7 1.0 56 69-124 305-375 (381)
59 3hcs_A TNF receptor-associated 99.2 1.9E-11 6.4E-16 82.5 3.7 51 69-123 15-66 (170)
60 2yu4_A E3 SUMO-protein ligase 99.1 4.9E-11 1.7E-15 73.1 3.5 47 70-119 5-59 (94)
61 1wim_A KIAA0161 protein; ring 99.1 5.5E-11 1.9E-15 72.8 3.7 48 71-119 4-61 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 99.1 1E-10 3.5E-15 65.8 4.2 49 70-122 4-59 (60)
63 2ea5_A Cell growth regulator w 99.1 1.3E-10 4.5E-15 67.0 4.4 47 70-124 13-60 (68)
64 2c2l_A CHIP, carboxy terminus 99.1 7.6E-11 2.6E-15 84.7 3.6 49 70-122 206-255 (281)
65 2ecg_A Baculoviral IAP repeat- 99.0 6.1E-11 2.1E-15 69.7 1.9 45 71-123 24-69 (75)
66 2f42_A STIP1 homology and U-bo 99.0 4.8E-10 1.6E-14 76.1 4.4 51 69-123 103-154 (179)
67 2yho_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 69.2 0.8 45 71-123 17-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.8 1.4E-09 4.8E-14 77.5 3.2 49 71-122 180-232 (267)
69 2bay_A PRE-mRNA splicing facto 98.8 1.3E-09 4.4E-14 61.5 1.9 51 72-125 3-53 (61)
70 3t6p_A Baculoviral IAP repeat- 98.8 1.2E-09 4E-14 81.3 0.7 44 71-122 294-338 (345)
71 3nw0_A Non-structural maintena 98.6 4.9E-08 1.7E-12 69.1 6.2 57 71-130 179-237 (238)
72 3vk6_A E3 ubiquitin-protein li 98.6 4.7E-08 1.6E-12 59.6 4.2 46 74-122 3-49 (101)
73 2ko5_A Ring finger protein Z; 97.8 2.1E-05 7.1E-10 47.2 3.6 53 70-127 26-78 (99)
74 2lri_C Autoimmune regulator; Z 97.1 0.00052 1.8E-08 38.8 3.3 47 70-120 10-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.0011 3.6E-08 40.3 3.1 35 71-106 2-36 (101)
76 1we9_A PHD finger family prote 96.2 0.0014 4.9E-08 36.6 1.2 50 70-119 4-58 (64)
77 2l5u_A Chromodomain-helicase-D 95.8 0.0071 2.4E-07 33.4 2.8 46 70-119 9-58 (61)
78 1wil_A KIAA1045 protein; ring 95.8 0.0075 2.6E-07 35.4 3.0 36 69-106 12-47 (89)
79 2k16_A Transcription initiatio 95.7 0.0044 1.5E-07 35.6 1.7 52 70-122 16-71 (75)
80 1wev_A Riken cDNA 1110020M19; 95.6 0.001 3.5E-08 39.7 -1.3 62 71-132 15-85 (88)
81 2vpb_A Hpygo1, pygopus homolog 95.2 0.018 6.3E-07 32.2 3.2 36 69-104 5-41 (65)
82 2yt5_A Metal-response element- 94.9 0.0075 2.6E-07 33.7 1.0 53 69-121 3-63 (66)
83 2l43_A N-teminal domain from h 94.9 0.0088 3E-07 35.6 1.2 53 70-122 23-78 (88)
84 2xb1_A Pygopus homolog 2, B-ce 94.8 0.0051 1.7E-07 37.9 0.0 51 72-122 3-64 (105)
85 2ku3_A Bromodomain-containing 94.7 0.016 5.4E-07 33.1 1.9 51 69-119 13-66 (71)
86 3u5n_A E3 ubiquitin-protein li 94.7 0.0064 2.2E-07 41.8 0.2 48 70-121 5-56 (207)
87 2yql_A PHD finger protein 21A; 94.5 0.0036 1.2E-07 34.0 -1.1 46 69-118 6-55 (56)
88 1wep_A PHF8; structural genomi 94.5 0.049 1.7E-06 31.5 3.8 49 71-120 11-64 (79)
89 2ks1_B Epidermal growth factor 94.4 0.05 1.7E-06 28.0 3.2 21 4-24 20-40 (44)
90 1mm2_A MI2-beta; PHD, zinc fin 94.3 0.0057 2E-07 33.8 -0.5 47 70-120 7-57 (61)
91 3o36_A Transcription intermedi 94.2 0.0076 2.6E-07 40.6 -0.1 48 70-121 2-53 (184)
92 3lqh_A Histone-lysine N-methyl 94.2 0.015 5.3E-07 39.3 1.4 48 73-120 3-64 (183)
93 2l2t_A Receptor tyrosine-prote 94.0 0.071 2.4E-06 27.4 3.4 22 4-25 19-40 (44)
94 1fp0_A KAP-1 corepressor; PHD 94.0 0.028 9.7E-07 33.4 2.1 50 69-122 22-75 (88)
95 2kgg_A Histone demethylase jar 93.9 0.051 1.8E-06 28.8 2.8 44 74-117 4-52 (52)
96 2lbm_A Transcriptional regulat 93.8 0.097 3.3E-06 33.9 4.4 46 69-118 60-116 (142)
97 1xwh_A Autoimmune regulator; P 93.4 0.017 5.7E-07 32.4 0.3 47 70-120 6-56 (66)
98 4gne_A Histone-lysine N-methyl 93.2 0.091 3.1E-06 32.3 3.5 50 69-124 12-67 (107)
99 2puy_A PHD finger protein 21A; 93.2 0.0061 2.1E-07 33.5 -1.7 49 70-122 3-55 (60)
100 1f62_A Transcription factor WS 93.2 0.043 1.5E-06 28.9 1.7 44 74-118 2-49 (51)
101 2ri7_A Nucleosome-remodeling f 93.1 0.028 9.5E-07 37.4 1.1 49 70-119 6-59 (174)
102 3ql9_A Transcriptional regulat 93.1 0.19 6.4E-06 32.0 4.9 46 69-118 54-110 (129)
103 2ysm_A Myeloid/lymphoid or mix 92.7 0.024 8.1E-07 35.0 0.3 47 70-117 5-55 (111)
104 3v43_A Histone acetyltransfera 92.6 0.21 7.3E-06 30.7 4.6 47 71-117 4-62 (112)
105 1wee_A PHD finger family prote 92.5 0.022 7.6E-07 32.4 -0.1 50 71-121 15-68 (72)
106 1wem_A Death associated transc 92.5 0.077 2.6E-06 30.4 2.3 48 72-121 16-72 (76)
107 3v43_A Histone acetyltransfera 91.8 0.032 1.1E-06 34.5 0.1 45 74-118 63-111 (112)
108 1weo_A Cellulose synthase, cat 91.6 0.67 2.3E-05 27.4 5.5 53 71-123 15-71 (93)
109 2cs3_A Protein C14ORF4, MY039 91.2 0.25 8.7E-06 28.6 3.4 40 70-109 13-52 (93)
110 1wew_A DNA-binding family prot 91.1 0.12 4E-06 29.8 2.0 49 71-121 15-74 (78)
111 2lv9_A Histone-lysine N-methyl 90.6 0.089 3E-06 31.8 1.2 44 73-118 29-75 (98)
112 1wen_A Inhibitor of growth fam 90.5 0.23 7.9E-06 28.1 2.8 46 71-121 15-67 (71)
113 2yw8_A RUN and FYVE domain-con 90.4 0.16 5.6E-06 29.5 2.2 53 70-122 17-75 (82)
114 2e6r_A Jumonji/ARID domain-con 89.9 0.029 9.8E-07 33.6 -1.4 49 70-119 14-66 (92)
115 3o70_A PHD finger protein 13; 89.5 0.079 2.7E-06 29.8 0.3 47 70-118 17-66 (68)
116 1wfk_A Zinc finger, FYVE domai 89.4 0.29 9.8E-06 28.9 2.8 55 70-124 7-68 (88)
117 2kwj_A Zinc finger protein DPF 89.4 0.22 7.4E-06 30.8 2.3 45 73-117 2-59 (114)
118 2jwa_A Receptor tyrosine-prote 88.8 0.66 2.2E-05 23.7 3.4 19 5-23 21-39 (44)
119 2ro1_A Transcription intermedi 88.5 0.059 2E-06 36.5 -0.8 45 72-120 2-50 (189)
120 1weu_A Inhibitor of growth fam 88.4 0.26 8.9E-06 29.4 2.1 48 71-121 35-87 (91)
121 1z2q_A LM5-1; membrane protein 88.1 0.45 1.5E-05 27.7 3.0 37 70-106 19-55 (84)
122 3c6w_A P28ING5, inhibitor of g 87.8 0.2 6.7E-06 27.3 1.2 43 71-118 8-57 (59)
123 3m62_A Ubiquitin conjugation f 87.2 0.73 2.5E-05 38.5 4.6 50 70-123 889-939 (968)
124 1vfy_A Phosphatidylinositol-3- 87.0 0.37 1.3E-05 27.3 2.1 33 73-105 12-44 (73)
125 2vnf_A ING 4, P29ING4, inhibit 87.0 0.21 7.3E-06 27.2 1.0 43 71-118 9-58 (60)
126 3t7l_A Zinc finger FYVE domain 86.4 0.41 1.4E-05 28.3 2.2 51 71-121 19-75 (90)
127 1joc_A EEA1, early endosomal a 85.5 0.39 1.3E-05 30.2 1.8 36 71-106 68-103 (125)
128 1y02_A CARP2, FYVE-ring finger 85.3 0.086 2.9E-06 33.1 -1.3 48 72-119 19-66 (120)
129 1x4u_A Zinc finger, FYVE domai 84.3 0.7 2.4E-05 26.8 2.4 36 70-105 12-47 (84)
130 2k1k_A Ephrin type-A receptor 84.1 1 3.5E-05 22.2 2.6 14 9-22 24-37 (38)
131 1z60_A TFIIH basal transcripti 84.1 0.54 1.9E-05 25.6 1.7 43 73-116 16-58 (59)
132 2e6s_A E3 ubiquitin-protein li 83.5 0.2 6.9E-06 28.8 -0.2 46 72-118 26-76 (77)
133 2cu8_A Cysteine-rich protein 2 83.0 1.6 5.3E-05 24.4 3.6 43 70-123 7-49 (76)
134 3a1b_A DNA (cytosine-5)-methyl 82.7 1.7 5.9E-05 28.5 4.0 45 69-117 76-132 (159)
135 2g6q_A Inhibitor of growth pro 82.6 0.5 1.7E-05 25.9 1.2 45 71-118 10-59 (62)
136 1dvp_A HRS, hepatocyte growth 82.2 0.54 1.8E-05 32.4 1.6 35 72-106 161-195 (220)
137 3shb_A E3 ubiquitin-protein li 81.8 0.15 5.1E-06 29.4 -1.2 44 74-118 28-76 (77)
138 3zyq_A Hepatocyte growth facto 81.7 0.6 2.1E-05 32.3 1.7 35 72-106 164-198 (226)
139 3kqi_A GRC5, PHD finger protei 81.6 1.8 6.1E-05 24.5 3.4 49 72-121 10-63 (75)
140 2gmg_A Hypothetical protein PF 81.5 0.31 1.1E-05 29.8 0.1 27 93-124 72-98 (105)
141 1iij_A ERBB-2 receptor protein 81.4 0.47 1.6E-05 23.0 0.7 19 5-23 17-35 (35)
142 3asl_A E3 ubiquitin-protein li 81.2 0.23 7.8E-06 28.0 -0.5 44 74-118 20-68 (70)
143 1zbd_B Rabphilin-3A; G protein 79.6 1 3.5E-05 28.7 2.1 49 70-118 53-106 (134)
144 1g47_A Pinch protein; LIM doma 79.1 1.3 4.3E-05 24.8 2.2 42 71-122 10-51 (77)
145 3mjh_B Early endosome antigen 78.4 0.63 2.1E-05 22.4 0.6 15 71-85 4-18 (34)
146 1iml_A CRIP, cysteine rich int 77.9 1.3 4.4E-05 24.7 2.0 41 73-118 28-69 (76)
147 2ysm_A Myeloid/lymphoid or mix 77.5 0.52 1.8E-05 28.8 0.2 46 74-120 56-105 (111)
148 1wyh_A SLIM 2, skeletal muscle 76.6 2.7 9.4E-05 22.9 3.2 40 73-122 6-45 (72)
149 2co8_A NEDD9 interacting prote 76.4 2.4 8.3E-05 24.1 2.9 42 71-123 14-55 (82)
150 2o35_A Hypothetical protein DU 76.1 1.2 4E-05 26.9 1.5 11 98-108 43-53 (105)
151 2d8v_A Zinc finger FYVE domain 75.9 2.1 7E-05 23.8 2.3 33 69-106 5-38 (67)
152 3fyb_A Protein of unknown func 75.9 1.2 4.1E-05 26.8 1.5 11 98-108 42-52 (104)
153 2jmi_A Protein YNG1, ING1 homo 75.2 0.64 2.2E-05 27.6 0.2 45 71-118 25-75 (90)
154 3ask_A E3 ubiquitin-protein li 75.0 0.58 2E-05 32.5 -0.1 45 73-118 175-224 (226)
155 2dj7_A Actin-binding LIM prote 74.5 3.1 0.00011 23.5 3.1 40 71-121 14-53 (80)
156 1x4k_A Skeletal muscle LIM-pro 74.4 2.1 7.3E-05 23.4 2.3 40 73-122 6-45 (72)
157 3mpx_A FYVE, rhogef and PH dom 74.3 0.64 2.2E-05 34.9 0.0 50 71-120 374-430 (434)
158 2jo1_A Phospholemman; FXYD1, N 74.1 8.1 0.00028 21.6 4.5 24 2-25 23-46 (72)
159 2pv0_B DNA (cytosine-5)-methyl 73.8 2.9 0.0001 31.4 3.4 45 70-118 91-147 (386)
160 3i2d_A E3 SUMO-protein ligase 73.8 3.4 0.00012 30.8 3.8 46 73-121 250-299 (371)
161 1x61_A Thyroid receptor intera 73.6 3.2 0.00011 22.6 2.9 12 73-84 6-17 (72)
162 2kwj_A Zinc finger protein DPF 73.6 0.2 7E-06 31.0 -2.4 47 74-121 60-110 (114)
163 1x63_A Skeletal muscle LIM-pro 73.4 3.4 0.00011 23.2 3.0 41 72-122 15-55 (82)
164 4fo9_A E3 SUMO-protein ligase 73.0 3.7 0.00013 30.5 3.8 47 73-122 216-266 (360)
165 3kv5_D JMJC domain-containing 72.7 1.1 3.8E-05 34.7 1.0 48 71-119 36-88 (488)
166 1x4l_A Skeletal muscle LIM-pro 72.6 3.5 0.00012 22.5 2.9 40 72-121 5-46 (72)
167 1x64_A Alpha-actinin-2 associa 72.4 4.7 0.00016 23.1 3.5 40 71-122 24-63 (89)
168 3o7a_A PHD finger protein 13 v 72.3 0.58 2E-05 24.6 -0.5 41 77-118 8-51 (52)
169 1a7i_A QCRP2 (LIM1); LIM domai 68.7 2 6.7E-05 24.3 1.2 40 72-122 7-46 (81)
170 1x68_A FHL5 protein; four-and- 68.0 4.7 0.00016 22.3 2.8 40 72-121 5-46 (76)
171 3f6q_B LIM and senescent cell 67.0 5.1 0.00017 21.6 2.8 43 71-123 10-52 (72)
172 1afo_A Glycophorin A; integral 67.0 5.9 0.0002 19.5 2.6 21 2-22 17-37 (40)
173 2d8y_A Eplin protein; LIM doma 65.3 6.8 0.00023 22.5 3.2 40 72-122 15-54 (91)
174 2zet_C Melanophilin; complex, 61.8 4.8 0.00017 26.1 2.2 47 70-118 66-116 (153)
175 2cor_A Pinch protein; LIM doma 61.6 9.5 0.00033 21.3 3.3 40 71-122 14-53 (79)
176 2rsd_A E3 SUMO-protein ligase 61.1 3.5 0.00012 22.7 1.3 47 70-118 8-64 (68)
177 2d8x_A Protein pinch; LIM doma 61.0 8.5 0.00029 20.7 3.0 39 72-122 5-43 (70)
178 3kv4_A PHD finger protein 8; e 60.5 2.4 8.4E-05 32.4 0.7 47 74-120 6-57 (447)
179 2jmo_A Parkin; IBR, E3 ligase, 60.2 0.52 1.8E-05 27.2 -2.4 19 93-113 55-73 (80)
180 2dar_A PDZ and LIM domain prot 59.3 2.9 0.0001 24.1 0.8 40 71-122 24-63 (90)
181 2d8z_A Four and A half LIM dom 58.8 11 0.00037 20.3 3.1 37 73-121 6-42 (70)
182 2jne_A Hypothetical protein YF 58.0 3.5 0.00012 24.8 0.9 40 73-121 33-72 (101)
183 2l3k_A Rhombotin-2, linker, LI 57.6 4.1 0.00014 25.0 1.3 34 73-108 37-70 (123)
184 1nyp_A Pinch protein; LIM doma 57.2 5.8 0.0002 21.2 1.8 39 72-122 5-43 (66)
185 2l4z_A DNA endonuclease RBBP8, 57.0 10 0.00035 23.3 3.1 39 72-121 61-99 (123)
186 1x62_A C-terminal LIM domain p 56.9 8 0.00027 21.5 2.4 39 71-121 14-52 (79)
187 2cup_A Skeletal muscle LIM-pro 56.7 11 0.00037 21.9 3.1 45 73-122 34-78 (101)
188 2jrp_A Putative cytoplasmic pr 56.2 5.8 0.0002 22.9 1.7 10 74-83 4-13 (81)
189 2jp3_A FXYD domain-containing 55.9 8.1 0.00028 21.4 2.1 18 3-20 25-42 (67)
190 1zfo_A LAsp-1; LIM domain, zin 54.9 3.1 0.0001 19.2 0.3 27 73-102 4-30 (31)
191 2kpi_A Uncharacterized protein 54.7 4.6 0.00016 21.5 1.0 28 71-98 9-38 (56)
192 2jvx_A NF-kappa-B essential mo 53.9 3.1 0.0001 19.0 0.2 10 111-120 4-13 (28)
193 2ct7_A Ring finger protein 31; 53.5 0.82 2.8E-05 26.6 -2.3 32 75-106 28-61 (86)
194 2pk7_A Uncharacterized protein 52.0 3 0.0001 23.3 -0.0 20 104-123 2-21 (69)
195 2ehe_A Four and A half LIM dom 51.5 9.4 0.00032 21.3 2.1 40 73-122 16-55 (82)
196 2egq_A FHL1 protein; LIM domai 51.4 11 0.00038 20.7 2.4 41 72-123 15-59 (77)
197 1wd2_A Ariadne-1 protein homol 51.1 0.99 3.4E-05 24.6 -2.1 35 73-107 7-45 (60)
198 2iyb_E Testin, TESS, TES; LIM 51.0 10 0.00034 20.2 2.1 39 73-122 3-44 (65)
199 2l34_A TYRO protein tyrosine k 49.5 13 0.00046 17.5 2.1 18 4-21 15-32 (33)
200 2jny_A Uncharacterized BCR; st 49.1 2.7 9.2E-05 23.4 -0.5 20 104-123 4-23 (67)
201 1v6g_A Actin binding LIM prote 48.5 14 0.00047 20.6 2.5 37 73-121 16-52 (81)
202 2ku7_A MLL1 PHD3-CYP33 RRM chi 48.3 33 0.0011 20.7 4.5 29 93-121 7-46 (140)
203 2cur_A Skeletal muscle LIM-pro 47.0 11 0.00038 20.2 1.9 37 73-121 6-42 (69)
204 1zza_A Stannin, AG8_1; helix, 44.4 16 0.00055 20.6 2.2 12 10-21 29-40 (90)
205 1m3v_A FLIN4, fusion of the LI 44.1 20 0.00069 21.7 2.9 48 73-122 33-81 (122)
206 1wig_A KIAA1808 protein; LIM d 43.4 20 0.00068 19.5 2.6 26 73-102 6-31 (73)
207 1j2o_A FLIN2, fusion of rhombo 41.8 16 0.00056 21.9 2.2 34 73-108 31-65 (114)
208 2zxe_G FXYD10, phospholemman-l 41.7 5.9 0.0002 22.4 0.1 9 5-13 29-37 (74)
209 2dlo_A Thyroid receptor-intera 41.4 20 0.00067 19.9 2.4 39 72-122 15-53 (81)
210 1x4i_A Inhibitor of growth pro 40.7 28 0.00095 19.2 2.9 47 71-120 5-56 (70)
211 1b8t_A Protein (CRP1); LIM dom 40.3 18 0.00062 23.8 2.4 40 73-117 35-74 (192)
212 2xjy_A Rhombotin-2; oncoprotei 40.1 21 0.00072 21.7 2.6 47 73-121 30-77 (131)
213 2cuq_A Four and A half LIM dom 39.7 21 0.00071 19.6 2.3 37 73-121 16-52 (80)
214 1loi_A Cyclic 3',5'-AMP specif 39.4 1.2 4.2E-05 19.2 -2.3 12 97-108 6-17 (26)
215 2a20_A Regulating synaptic mem 38.6 21 0.00071 19.3 2.0 37 69-106 6-43 (62)
216 2jr6_A UPF0434 protein NMA0874 37.0 3 0.0001 23.3 -1.6 18 106-123 4-21 (68)
217 2csz_A Synaptotagmin-like prot 36.9 12 0.00043 21.2 1.0 35 69-103 22-57 (76)
218 1x3h_A Leupaxin; paxillin fami 36.9 27 0.00092 19.1 2.5 38 73-122 16-53 (80)
219 1rut_X Flinc4, fusion protein 34.4 25 0.00087 23.0 2.4 47 73-121 33-80 (188)
220 2hf1_A Tetraacyldisaccharide-1 33.8 3 0.0001 23.3 -2.0 17 107-123 5-21 (68)
221 2akl_A PHNA-like protein PA012 32.3 11 0.00038 23.8 0.3 27 72-98 27-54 (138)
222 2fiy_A Protein FDHE homolog; F 32.3 2.6 8.9E-05 30.6 -3.0 49 70-119 180-231 (309)
223 2js4_A UPF0434 protein BB2007; 31.4 3.3 0.00011 23.2 -2.0 18 106-123 4-21 (70)
224 2jtn_A LIM domain-binding prot 31.1 41 0.0014 21.8 3.0 26 95-122 106-131 (182)
225 2lcq_A Putative toxin VAPC6; P 30.7 9.4 0.00032 24.7 -0.2 26 90-121 134-159 (165)
226 2xqn_T Testin, TESS; metal-bin 30.1 28 0.00094 21.0 1.9 45 73-122 31-75 (126)
227 3c5k_A HD6, histone deacetylas 29.6 40 0.0014 20.3 2.5 24 72-99 24-47 (109)
228 1pft_A TFIIB, PFTFIIBN; N-term 27.0 52 0.0018 16.4 2.4 28 72-99 5-35 (50)
229 2k5r_A Uncharacterized protein 26.3 7.9 0.00027 23.2 -1.1 19 105-123 3-21 (97)
230 2ffw_A Midline-1; B-BOX, ring 25.2 88 0.003 17.3 3.3 36 70-106 28-63 (78)
231 1yuz_A Nigerythrin; rubrythrin 24.6 28 0.00096 23.4 1.3 23 90-119 173-195 (202)
232 4gut_A Lysine-specific histone 24.6 66 0.0022 26.3 3.6 39 70-109 11-56 (776)
233 2roo_A Neurotoxin MAGI-4; spid 23.6 2.7 9.3E-05 20.8 -2.9 15 101-115 19-33 (43)
234 1l8d_A DNA double-strand break 23.3 19 0.00066 21.5 0.2 9 112-120 49-57 (112)
235 2lq6_A Bromodomain-containing 23.0 35 0.0012 19.7 1.3 34 72-106 17-51 (87)
236 4bbq_A Lysine-specific demethy 22.4 20 0.00068 21.6 0.2 45 74-118 61-113 (117)
237 1xrd_A LH-1, light-harvesting 21.5 37 0.0013 17.8 1.1 25 4-28 17-41 (52)
238 1qdp_A Robustoxin; neurotoxin, 21.3 2.7 9.2E-05 20.7 -3.1 14 101-114 19-32 (42)
239 1x6a_A LIMK-2, LIM domain kina 20.9 1.1E+02 0.0038 16.5 4.1 37 73-121 16-52 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=119.21 Aligned_cols=78 Identities=36% Similarity=0.683 Sum_probs=70.2
Q ss_pred hcCCCCCHHHHhhCcceeeecCccCCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 44 RNNNKPSAEAAAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
....+.+++.+..++...+.......+++..|+||++.|..++.+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3467899999999999999887777778889999999999989899998 99999999999999989999999998764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-20 Score=108.77 Aligned_cols=69 Identities=29% Similarity=0.754 Sum_probs=56.6
Q ss_pred HhhCcceeeecCccCCCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 54 AAAHTLVVYSAGIKLTGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
+..++...++... ...++.+|+||++.|..++.+..++ |||.||.+||..|+..+.+||+||..+....
T Consensus 6 i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 6 SGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred HhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 3456666665443 3345678999999999999999998 9999999999999998999999999887653
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=102.70 Aligned_cols=58 Identities=31% Similarity=0.759 Sum_probs=50.7
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTST 127 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (135)
...+..|+||++.|.+++.+..++ |||.||..||..|+..+.+||+||..+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 345678999999999988888888 9999999999999988889999999998765443
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=100.99 Aligned_cols=56 Identities=38% Similarity=0.857 Sum_probs=49.5
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
...+..|+||++.|..++.+..++ |||.||..||..|+..+.+||+||..+....+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 355678999999998888888898 99999999999999988999999999887643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=9.2e-19 Score=104.22 Aligned_cols=61 Identities=36% Similarity=0.805 Sum_probs=52.6
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTSTPTS 130 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~~ 130 (135)
..++.+|+||++.|..++.+..++ |||.||..||..|+..+.+||+||..+......+.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 72 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPP 72 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCC
Confidence 345689999999999988888888 9999999999999998899999999998776554443
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.75 E-value=4.7e-19 Score=98.72 Aligned_cols=52 Identities=42% Similarity=1.092 Sum_probs=46.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+++.+|+||++.|.+++.+..++.|||.||.+||..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567999999999998888888779999999999999999999999998764
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=101.62 Aligned_cols=54 Identities=26% Similarity=0.759 Sum_probs=43.9
Q ss_pred CCccccccccccccC-----------CCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVE-----------GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.+++.|+||+++|.+ ++.++.++.|||.||.+||..|+..+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356778888888854 344566666999999999999999999999999987643
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.69 E-value=3.6e-17 Score=103.91 Aligned_cols=58 Identities=24% Similarity=0.602 Sum_probs=46.4
Q ss_pred CccccccccccccCCC---------------eEEEcCCCCCcccHHHHHHHH-----hcCCCcccccccccCCCCCCCC
Q 047778 71 AEAECVICLSEFVEGD---------------VIQVLERCKHGFHSQCIQKWL-----YSHYSCPICRCNCLFSPTSTPT 129 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~~~~~~ 129 (135)
.+.+|+||++.|.++. .+..++ |||.||.+||..|+ ..+.+||+||..+......+|.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3569999999997653 334666 99999999999999 4466899999999887665554
No 9
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.8e-17 Score=96.57 Aligned_cols=62 Identities=21% Similarity=0.546 Sum_probs=49.5
Q ss_pred ccCCCCccccccccccccCCCeEEEcCCCC-----CcccHHHHHHHHhcC--CCcccccccccCCCCCCCC
Q 047778 66 IKLTGAEAECVICLSEFVEGDVIQVLERCK-----HGFHSQCIQKWLYSH--YSCPICRCNCLFSPTSTPT 129 (135)
Q Consensus 66 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~~~~ 129 (135)
.....++..|.||+++|.+++.+ ++| |+ |.||.+||+.|+..+ .+||+||..+.......|+
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 34445678999999999877766 577 86 999999999999654 5899999999877655544
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.67 E-value=4.8e-17 Score=94.91 Aligned_cols=55 Identities=31% Similarity=0.630 Sum_probs=46.3
Q ss_pred CCCccccccccccccCC----CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.+++.+|+||++.|.++ +.+..++ |||.||..||..|+..+.+||+||..+....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 34568999999999763 4556676 9999999999999998899999999987654
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.66 E-value=3.8e-17 Score=90.81 Aligned_cols=51 Identities=31% Similarity=0.734 Sum_probs=43.3
Q ss_pred CCccccccccccccCCC-eEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGD-VIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
.++.+|+||++.|.+++ .+..++ |||.||.+||..|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34678999999996644 466676 9999999999999988899999998764
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-17 Score=93.63 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=44.4
Q ss_pred CCCccccccccccccCC----CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 69 TGAEAECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..++..|+||++.|.++ ..+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34568899999999764 3446676 99999999999999888999999998753
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=91.65 Aligned_cols=58 Identities=21% Similarity=0.502 Sum_probs=47.1
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTSTPT 129 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~ 129 (135)
..++..|+||++.|.++ ..+..|||.||..||..|+..+..||+||..+.........
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 35568899999999774 34423999999999999998889999999999876655443
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.64 E-value=1.1e-16 Score=100.49 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=44.1
Q ss_pred CCccccccccccccCCC---------------eEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGD---------------VIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.+++.|+||++.|.+.. .+..++ |+|.||..||+.||..+.+||+||+.+...
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 35678999999998641 255666 999999999999999999999999987543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=91.37 Aligned_cols=52 Identities=35% Similarity=0.669 Sum_probs=44.3
Q ss_pred CccccccccccccCC----CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
++.+|+||++.+.++ +.+..++ |||.||.+|+..|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 457899999999763 4456666 999999999999998889999999988764
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=92.27 Aligned_cols=54 Identities=37% Similarity=0.816 Sum_probs=45.6
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTST 127 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (135)
..++..|+||++.+.+ ..++ |||.||..||..|+..+.+||+||..+.......
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3456789999999876 5666 9999999999999998899999999988665443
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=93.54 Aligned_cols=53 Identities=28% Similarity=0.484 Sum_probs=44.4
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTS 126 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 126 (135)
.++..|+||++.+.++ ..++ |||.||..||..|+..+..||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 4567899999998664 4566 999999999999998889999999998755433
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.59 E-value=7.3e-16 Score=89.17 Aligned_cols=50 Identities=28% Similarity=0.703 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
+.+..|+||++.+.++ +..++ |||.||..|+..|+..+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4567899999998653 45677 99999999999999988999999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=91.08 Aligned_cols=54 Identities=31% Similarity=0.669 Sum_probs=45.2
Q ss_pred CCCccccccccccccCCCe-EEEcCCCCCcccHHHHHHHHhcC---CCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDV-IQVLERCKHGFHSQCIQKWLYSH---YSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~ 123 (135)
..++.+|+||++.|.+.+. ...++ |||.||..||..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3556789999999988664 56776 99999999999999765 7899999987654
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.57 E-value=2.2e-16 Score=100.54 Aligned_cols=54 Identities=26% Similarity=0.641 Sum_probs=1.6
Q ss_pred CCccccccccccccCC-------------C-eEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEG-------------D-VIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~-------------~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.+++.|+||++.|.+. + ...++..|+|.||.+||+.||..+.+||+||+++...
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 4567999999999752 1 1223234999999999999999999999999987654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=87.92 Aligned_cols=53 Identities=25% Similarity=0.571 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC--CCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH--YSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 124 (135)
..++..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34567899999999876 3455599999999999999755 68999999765443
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=89.61 Aligned_cols=48 Identities=25% Similarity=0.505 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..+..|+||++.|.++ .+++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999764 4566 9999999999999988889999999885
No 23
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=87.18 Aligned_cols=58 Identities=26% Similarity=0.511 Sum_probs=46.2
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC--CCcccccccccCCCCCCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH--YSCPICRCNCLFSPTSTPTS 130 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~~~~~ 130 (135)
+...+|+||.+.+..++... .|+|.||..||..||+.+ .+||+||..+.......++|
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~~~ 72 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSGPS 72 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCCSC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCCCC
Confidence 34578999999998764333 599999999999999776 78999999988665444443
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-15 Score=85.03 Aligned_cols=50 Identities=22% Similarity=0.461 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 123 (135)
.++..|+||++.+.++. .++ |||.||..||..|+ ..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45688999999998762 355 99999999999999 4567899999988754
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.1e-15 Score=86.35 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=42.0
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh---cCCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY---SHYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 123 (135)
..++..|+||++.|.++ ..++ |||.||..||..|+. .+..||+||..+...
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 35568999999998764 4566 999999999999996 455799999988754
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.53 E-value=2.5e-15 Score=98.50 Aligned_cols=49 Identities=39% Similarity=0.922 Sum_probs=42.1
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
++..|+||++.|.++ .+++ |||.||..||..|+..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 356799999999764 4666 999999999999999999999999988543
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=1.2e-14 Score=83.34 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=41.8
Q ss_pred Cccccccccc-cccCCCeEE-EcCCCCCcccHHHHHHHHhc-CCCcccccccccCCC
Q 047778 71 AEAECVICLS-EFVEGDVIQ-VLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFSP 124 (135)
Q Consensus 71 ~~~~C~ICl~-~~~~~~~~~-~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 124 (135)
++..|+||++ .+.++.... .++ |||.||..||..|+.+ +..||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3578999999 787765433 455 9999999999999754 467999999887543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.51 E-value=1.5e-14 Score=85.80 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=43.0
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 123 (135)
..++..|+||++.|.++ .+++ |||.||..||..|+.. +.+||+||..+...
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 35678999999999775 4456 9999999999999976 77899999988654
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.51 E-value=8.6e-15 Score=94.73 Aligned_cols=54 Identities=31% Similarity=0.641 Sum_probs=45.7
Q ss_pred CCccccccccccccCC----CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 70 GAEAECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.++..|+||++.|.++ +.+..++ |||.||.+||..|+..+.+||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4567999999999764 4456676 9999999999999999999999999887554
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=3.8e-14 Score=84.99 Aligned_cols=51 Identities=33% Similarity=0.671 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc------CCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS------HYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 123 (135)
..++..|+||++.|.++ ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34567999999999876 3566 9999999999999976 66899999988754
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-14 Score=80.51 Aligned_cols=44 Identities=30% Similarity=0.748 Sum_probs=36.9
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh---cCCCcccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY---SHYSCPIC 116 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 116 (135)
..++..|+||++.|.++ .+++ |||.||..||..|+. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35668999999999875 4566 999999999999997 45579998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=90.40 Aligned_cols=49 Identities=24% Similarity=0.694 Sum_probs=41.3
Q ss_pred CccccccccccccCCCeEEE-cCCCCCcccHHHHHHHHhcC-CCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQV-LERCKHGFHSQCIQKWLYSH-YSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~-l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 123 (135)
++..|+||++.|.++ .. ++ |||.||..||..|+..+ ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 457899999999764 44 65 99999999999999877 6899999988543
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-15 Score=86.94 Aligned_cols=51 Identities=31% Similarity=0.641 Sum_probs=42.4
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-------CCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-------HYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~ 123 (135)
..++..|+||++.|.++ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 35668899999999876 3466 9999999999999976 56799999988653
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.47 E-value=4.6e-14 Score=86.19 Aligned_cols=50 Identities=26% Similarity=0.626 Sum_probs=41.0
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC--CCccccccccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH--YSCPICRCNCL 121 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~ 121 (135)
..++..|+||++.|.++ .+++.|||.||..||..|+..+ ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35668899999999876 4554499999999999999643 58999999874
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=88.49 Aligned_cols=49 Identities=29% Similarity=0.655 Sum_probs=41.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
++..|+||++.|.++ ..++.|||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999764 3442499999999999999988899999998765
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.1e-14 Score=84.44 Aligned_cols=51 Identities=29% Similarity=0.637 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc------CCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS------HYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 123 (135)
..++..|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 34568999999999775 4456 9999999999999976 67899999988754
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.7e-14 Score=78.53 Aligned_cols=44 Identities=36% Similarity=0.997 Sum_probs=36.2
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH---hcCCCcccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL---YSHYSCPIC 116 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~C 116 (135)
..++..|+||++.+.++ ..++ |||.||..||..|+ ..+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999876 3466 99999999999995 356679998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.45 E-value=5.6e-14 Score=88.33 Aligned_cols=51 Identities=29% Similarity=0.751 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.++..|+||++.|.++ +.+.+ |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567899999999764 33336 999999999999999889999999988754
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.44 E-value=6.7e-14 Score=90.03 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=41.1
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC-CcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY-SCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 123 (135)
++..|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+...
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 100 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence 457899999999865 4566 999999999999997544 899999998763
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.41 E-value=1.1e-13 Score=89.50 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=44.2
Q ss_pred CCccccccccccccCC----CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEG----DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
+++..|+||++.|.++ .....++ |||.||..||+.|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999998763 3345565 999999999999999999999999988754
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.41 E-value=2e-13 Score=91.82 Aligned_cols=49 Identities=35% Similarity=0.676 Sum_probs=40.7
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (135)
++..|+||++.|.++ +.+++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999764 43446 9999999999999976 7789999998854
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.38 E-value=3.8e-13 Score=79.83 Aligned_cols=55 Identities=20% Similarity=0.392 Sum_probs=42.0
Q ss_pred CCCccccccccccccCCCeE-EEcCCCCCcccHHHHHHHHh-cCCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVI-QVLERCKHGFHSQCIQKWLY-SHYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 124 (135)
.+++.+|+||++.+...+.. ..++ |||.||..|+..++. .+..||.||..+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 35668999999998653322 2234 999999999999984 4567999999887654
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.37 E-value=2.9e-13 Score=86.39 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=42.4
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC-CcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY-SCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 123 (135)
..++..|+||++.+.++ ..++ |||.||..||..|+..+. +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 35668999999999775 4566 999999999999996654 899999988653
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=3.2e-13 Score=85.13 Aligned_cols=49 Identities=31% Similarity=0.601 Sum_probs=40.8
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC---CcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY---SCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~~~~~ 123 (135)
+...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 356899999999776 3456 999999999999997654 799999988764
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.36 E-value=4.3e-13 Score=89.01 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=41.4
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC-CcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY-SCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 123 (135)
++..|+||++.|.++ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456899999999775 4466 999999999999997654 799999998865
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=8.8e-14 Score=88.31 Aligned_cols=49 Identities=31% Similarity=0.640 Sum_probs=41.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (135)
.++..|+||++.|.++ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467899999999875 4566 9999999999999965 6689999998753
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.34 E-value=4e-13 Score=85.36 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=41.8
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccCCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFSP 124 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 124 (135)
++..|+||++.+.++ ..++ |||.||..||..|+.. +.+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 357899999999765 3466 9999999999999976 678999999887643
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.33 E-value=4.9e-13 Score=87.89 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=41.9
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC-CcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY-SCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 123 (135)
.+++..|+||++.|.++ ..++ |||.||..||..|+..+. +||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 45678999999999876 3455 999999999999997554 899999986543
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.33 E-value=4.8e-13 Score=76.49 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCeEE-EcCCCCCc-ccHHHHHHHHhcCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQ-VLERCKHG-FHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~-~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+++.+|.||++.+.+. +. .+| |||. ||.+|+..|...+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3567899999987553 22 237 9999 899999999988889999999875
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.32 E-value=1.7e-12 Score=78.29 Aligned_cols=50 Identities=14% Similarity=-0.017 Sum_probs=43.5
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.++..|+||++.|.++ .+++ |||.|+..||..|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4568899999999886 5666 999999999999998888999999987643
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=4.5e-13 Score=74.61 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
.++..|+||++.|.++ .+++ |||.||..|+..| ...||+||..+.....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 4567899999999876 5677 9999999999884 5689999998876543
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.30 E-value=9.6e-13 Score=75.00 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
+.+..|.||++...+. .+..+| |||. ||..|+..|...+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4467899999986553 122237 9998 999999999988889999999875
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.28 E-value=3.1e-12 Score=79.34 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=43.6
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.++..|+||++.|.++ .+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4567899999999887 5566 999999999999998888999999988653
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.27 E-value=1.7e-12 Score=97.38 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=42.1
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-cCCCcccccccccCCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-SHYSCPICRCNCLFSP 124 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 124 (135)
....|+||++.+.+. ..++ |||.||..|+..|+. .+.+||+||..+....
T Consensus 331 ~~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 346899999998653 5666 999999999999997 6788999999887653
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.26 E-value=5.5e-12 Score=77.93 Aligned_cols=50 Identities=18% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCeEEEcCCCC-CcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCK-HGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.++..|+||++.|.++ .+++ || |.|+..||..|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4568899999999886 4566 99 9999999999998888999999988754
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=2.2e-12 Score=82.09 Aligned_cols=46 Identities=26% Similarity=0.594 Sum_probs=39.4
Q ss_pred CccccccccccccCCCeEEEc-CCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVL-ERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
++..|+||++.|.++ ..+ + |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 457899999999876 445 5 999999999999987 789999998854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.19 E-value=3.8e-12 Score=74.73 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=37.3
Q ss_pred CccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
++..|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 457899999997653 5667 9999 999999998 789999998764
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.17 E-value=3.7e-12 Score=93.69 Aligned_cols=56 Identities=23% Similarity=0.602 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCCeEE----EcCCCCCcccHHHHHHHHhcC-----------CCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQ----VLERCKHGFHSQCIQKWLYSH-----------YSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~----~l~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~~ 124 (135)
.+...+|+||++.+.+++.+. ..+.|||.||..|+..||... .+||+||+++..+.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 346678999999998733321 233599999999999999542 36999999887553
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=82.46 Aligned_cols=51 Identities=29% Similarity=0.490 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC-CCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH-YSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 123 (135)
..++..|+||++.|.++ ..++ |||.||..||..|+..+ .+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45678999999999876 4466 99999999999999654 4899999988653
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=4.9e-11 Score=73.06 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=38.0
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC------CCccc--cccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH------YSCPI--CRCN 119 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~ 119 (135)
..+..|+||++.|.++ .+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999876 3443499999999999999653 48999 8765
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=5.5e-11 Score=72.77 Aligned_cols=48 Identities=23% Similarity=0.659 Sum_probs=39.8
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc--------CCCccc--cccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS--------HYSCPI--CRCN 119 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 119 (135)
+..+|+||++++..++.+.+.+ |||.||.+|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999998877776666 9999999999999842 236999 9877
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.09 E-value=1e-10 Score=65.84 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=37.5
Q ss_pred CCccccccccccccCCCeEEEcCCCC--C---cccHHHHHHHHh--cCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCK--H---GFHSQCIQKWLY--SHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 122 (135)
+++..|.||+++.. +.+ ++| |. + .||.+|+..|+. ++.+||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45678999999843 333 466 55 4 899999999995 36789999998764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=67.04 Aligned_cols=47 Identities=28% Similarity=0.641 Sum_probs=38.2
Q ss_pred CCccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCcccccccccCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
+++..|.||++...+ +..+| |||. ||..|+.. ...||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 456789999998655 46777 9999 99999984 478999999887653
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=7.6e-11 Score=84.72 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=41.2
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (135)
.....|+||++.|.++ .+++ |||.||..||..|+.. +.+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4567899999999886 4566 9999999999999965 4459999998854
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=6.1e-11 Score=69.65 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=36.4
Q ss_pred CccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
++..|+||++.+.+. ..++ |||. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 356899999998664 4566 9999 99999964 37899999988654
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.96 E-value=4.8e-10 Score=76.13 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc-CCCcccccccccCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS-HYSCPICRCNCLFS 123 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 123 (135)
..+...|+||++.|.++ .+++ |||.|+..||..|+.. +.+||+|+.++...
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34678899999999886 4556 9999999999999965 34799999887643
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.95 E-value=1.2e-10 Score=69.16 Aligned_cols=45 Identities=24% Similarity=0.617 Sum_probs=37.0
Q ss_pred CccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
++..|.||++.+.+ +..+| |||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 35689999998755 46677 9999 999999887 4999999987654
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.4e-09 Score=77.49 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=38.9
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcC--CCccc--ccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSH--YSCPI--CRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~ 122 (135)
.+..|+||++.|.++ |+... |||.|+..||..|+..+ ..||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345699999999776 33334 99999999999999654 46999 9987643
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.81 E-value=1.3e-09 Score=61.47 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=41.8
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPT 125 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (135)
...|+|+++.|.++ .+++.+||+|...||..|+..+.+||+.+.++.....
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 36799999999876 3442399999999999999877889999998876543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.76 E-value=1.2e-09 Score=81.27 Aligned_cols=44 Identities=27% Similarity=0.577 Sum_probs=37.1
Q ss_pred CccccccccccccCCCeEEEcCCCCCc-ccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHG-FHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
++..|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356899999998663 5667 9999 999999988 789999998764
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.65 E-value=4.9e-08 Score=69.13 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=44.9
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCC--CcccccccccCCCCCCCCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHY--SCPICRCNCLFSPTSTPTS 130 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~~~~~~~~~~~~ 130 (135)
....|.||.+-...+ ...+.|+|.||..|+..|++.+. .||.|+..+....+..+.|
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~~~~ 237 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVFDP 237 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCCCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCC
Confidence 457899999998876 34445999999999999996544 8999999988775544433
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.59 E-value=4.7e-08 Score=59.55 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=37.1
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-cCCCcccccccccC
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-SHYSCPICRCNCLF 122 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 122 (135)
.|.+|--++. ...++.| |+|+||.+|+..|.+ ..++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777877763 3568888 999999999999984 46789999998764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.79 E-value=2.1e-05 Score=47.18 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=40.3
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCCCCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFSPTST 127 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (135)
.+...|-.|+-..+. +..-..|.+|..|+...|..+..||+|+.++..+-...
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 345789999987543 23214599999999999999999999999887654443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.07 E-value=0.00052 Score=38.81 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=34.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRCNC 120 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 120 (135)
..+..|.||.+. + .+..-..|...||..|++..+.. ...||.|+...
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 445679999753 3 34455569999999999988743 34699997543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.75 E-value=0.0011 Score=40.33 Aligned_cols=35 Identities=14% Similarity=0.474 Sum_probs=25.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
++..|.||++.+.......-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3578999998753332333366 9999999999984
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.22 E-value=0.0014 Score=36.55 Aligned_cols=50 Identities=22% Similarity=0.624 Sum_probs=36.0
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-----cCCCccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-----SHYSCPICRCN 119 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 119 (135)
+++..|+||...+.+++..+....|...||..|+..-.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999999865554555556999999999864321 33469999764
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.82 E-value=0.0071 Score=33.45 Aligned_cols=46 Identities=22% Similarity=0.631 Sum_probs=33.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCN 119 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~ 119 (135)
..+..|.+|.+. ..+..-..|...||..|+..-+. ....||.|+..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999873 34455556999999999987542 23469999753
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.82 E-value=0.0075 Score=35.41 Aligned_cols=36 Identities=17% Similarity=0.521 Sum_probs=24.7
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
...|+.|.||- .+..++...-- -|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 45678999994 34444322222 38999999999996
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.70 E-value=0.0044 Score=35.63 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=36.8
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~~~ 122 (135)
.+...|.||..... ++..+....|.-.||..|+..-.. ....||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 45567999988753 444556667999999999976542 23469999876543
No 80
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.60 E-value=0.001 Score=39.75 Aligned_cols=62 Identities=18% Similarity=0.381 Sum_probs=42.4
Q ss_pred CccccccccccccC-CCeEEEcCCCCCcccHHHHHHHHh--------cCCCcccccccccCCCCCCCCCCC
Q 047778 71 AEAECVICLSEFVE-GDVIQVLERCKHGFHSQCIQKWLY--------SHYSCPICRCNCLFSPTSTPTSPQ 132 (135)
Q Consensus 71 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~~~~~~~~~~~~~~ 132 (135)
.+..|.||...-.. ++.+.....|...||..|+.+-+. ....|+.|+..........+.+++
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~~~~~~ 85 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQKSGP 85 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCCCSCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccccCCCCC
Confidence 35679999986432 245666667999999999986542 345699998877666555444433
No 81
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.23 E-value=0.018 Score=32.22 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=27.0
Q ss_pred CCCccccccccccccCCCeEEEcC-CCCCcccHHHHH
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLE-RCKHGFHSQCIQ 104 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~ 104 (135)
.+....|++|..++.+++..+... .|.-.||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345678999999998776666666 799999999983
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=94.94 E-value=0.0075 Score=33.72 Aligned_cols=53 Identities=21% Similarity=0.641 Sum_probs=37.2
Q ss_pred CCCcccccccccccc-CCCeEEEcCCCCCcccHHHHHHHH-------hcCCCccccccccc
Q 047778 69 TGAEAECVICLSEFV-EGDVIQVLERCKHGFHSQCIQKWL-------YSHYSCPICRCNCL 121 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl-------~~~~~CP~Cr~~~~ 121 (135)
.+++..|.||..... ++..+..-..|.-.||..|+..-+ .....|+.|+....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 356789999998653 334555666799999999987633 23456999976543
No 83
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.86 E-value=0.0088 Score=35.61 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=36.9
Q ss_pred CCccccccccccc-cCCCeEEEcCCCCCcccHHHHHHHH--hcCCCcccccccccC
Q 047778 70 GAEAECVICLSEF-VEGDVIQVLERCKHGFHSQCIQKWL--YSHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl--~~~~~CP~Cr~~~~~ 122 (135)
+++..|.||...- .+++.+.....|.-.||..|+..-. .....||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4567899998763 2334566666798999999997643 234469999765443
No 84
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=94.79 E-value=0.0051 Score=37.87 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=36.1
Q ss_pred ccccccccccccCCCeEEEcC-CCCCcccHHHHHHHH----------hcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLE-RCKHGFHSQCIQKWL----------YSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----------~~~~~CP~Cr~~~~~ 122 (135)
...|.||...+.+.+..+... .|.-.||..|+.--- .....||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 357999999987665555554 689999999984221 034469999876543
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=94.66 E-value=0.016 Score=33.08 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=35.8
Q ss_pred CCCccccccccccc-cCCCeEEEcCCCCCcccHHHHHHHH--hcCCCccccccc
Q 047778 69 TGAEAECVICLSEF-VEGDVIQVLERCKHGFHSQCIQKWL--YSHYSCPICRCN 119 (135)
Q Consensus 69 ~~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl--~~~~~CP~Cr~~ 119 (135)
..++..|.||.+.- .+++.+.....|.-.||..|+..-. .....||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 35668899998763 3445666666799999999997533 233469998653
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.66 E-value=0.0064 Score=41.82 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=35.3
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (135)
..++.|.+|... +.+.....|...||..|+.+-+.. ...||.|+..-.
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 456789999854 446666679999999999876532 346999986543
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.49 E-value=0.0036 Score=34.01 Aligned_cols=46 Identities=26% Similarity=0.711 Sum_probs=32.2
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRC 118 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 118 (135)
.+++..|.+|.+. + .+..-..|...||..|+.+-+.. ...||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567789999874 3 34455569999999999865432 335888854
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.49 E-value=0.049 Score=31.54 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=33.3
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-----hcCCCcccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-----YSHYSCPICRCNC 120 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~ 120 (135)
+...| ||...+.++...+....|...||..|+.--- .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34557 9999886444444555699999999995322 1345699998654
No 89
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=94.37 E-value=0.05 Score=27.98 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 047778 4 ALTCALALNTAIRCFLRDNNN 24 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~ 24 (135)
++++++.+...+++|++|++.
T Consensus 20 Gv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 20 ALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhhhhHh
Confidence 344444555555566665544
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.33 E-value=0.0057 Score=33.82 Aligned_cols=47 Identities=23% Similarity=0.669 Sum_probs=32.4
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCcccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCNC 120 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~ 120 (135)
.++..|.||.+. + .+..-..|...||..|+..-+. ....||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 3 3444446888999999986543 234599997643
No 91
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=94.25 E-value=0.0076 Score=40.62 Aligned_cols=48 Identities=27% Similarity=0.601 Sum_probs=34.5
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCccccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRCNCL 121 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (135)
.+++.|.+|.+. ++ +.....|.-.||..|+.+-+.. ...||.|+....
T Consensus 2 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 356789999854 33 5566679999999998776532 346999987543
No 92
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.23 E-value=0.015 Score=39.27 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=35.0
Q ss_pred cccccccccccCCCe---EEEcCCCCCcccHHHHHHH------Hh-----cCCCcccccccc
Q 047778 73 AECVICLSEFVEGDV---IQVLERCKHGFHSQCIQKW------LY-----SHYSCPICRCNC 120 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~---~~~l~~C~H~fh~~Ci~~w------l~-----~~~~CP~Cr~~~ 120 (135)
..|+||...|.+++. .+....|...||..|+.-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999988762 5555679999999998321 11 156799998653
No 93
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=94.05 E-value=0.071 Score=27.38 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc
Q 047778 4 ALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
++++++.+...+++|++|++..
T Consensus 19 Gv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 19 GLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 3444445555555666655443
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.03 E-value=0.028 Score=33.40 Aligned_cols=50 Identities=22% Similarity=0.553 Sum_probs=34.9
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccccccC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRCNCLF 122 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 122 (135)
.+++..|.+|... + .+.....|.-.||..|+.+=+.. ...||.|+..-..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 3456789999865 3 34455568889999999775532 3469999765433
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=93.91 E-value=0.051 Score=28.83 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=30.6
Q ss_pred ccccccccccCCCeEEEcC-CCCCcccHHHHHHHH----hcCCCccccc
Q 047778 74 ECVICLSEFVEGDVIQVLE-RCKHGFHSQCIQKWL----YSHYSCPICR 117 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----~~~~~CP~Cr 117 (135)
.|.+|..++.+++..+.-. .|.-.||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4779999887665555555 588899999985321 2455698885
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=93.78 E-value=0.097 Score=33.87 Aligned_cols=46 Identities=26% Similarity=0.658 Sum_probs=33.6
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-----------cCCCcccccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-----------SHYSCPICRC 118 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 118 (135)
.+.++.|.+|.+. + .+.....|...||..|+.+=+. ....||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567899999875 4 4445556999999999996542 2346999964
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=93.43 E-value=0.017 Score=32.40 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=33.2
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCcccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCNC 120 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~ 120 (135)
.++..|.||.+. + .+.....|.-.||..|+.+-+. ....||.|...-
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 456789999864 3 3445556999999999986442 234599997543
No 98
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.25 E-value=0.091 Score=32.33 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=33.5
Q ss_pred CCCccccccccccccCCCeEEEcC--CCCCcccHHHHHHHHhc----CCCcccccccccCCC
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKWLYS----HYSCPICRCNCLFSP 124 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~~~~ 124 (135)
..+++.|.+|.+ +..+..-. .|...||..|+. |.. ...||.|+..+-.+.
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 456778999984 34455554 488999999997 432 235888776555443
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.20 E-value=0.0061 Score=33.54 Aligned_cols=49 Identities=24% Similarity=0.578 Sum_probs=34.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~~~ 122 (135)
.++..|.+|... + .+..-..|.-.||..|+.+-+. ....||.|......
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 356789999874 3 3445556999999999986443 23359999765543
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.16 E-value=0.043 Score=28.87 Aligned_cols=44 Identities=27% Similarity=0.795 Sum_probs=29.8
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 118 (135)
.|.||...-.. +.+..-..|...||..|+.+=+.. ...||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888876332 344555579999999999764422 335999965
No 101
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=93.09 E-value=0.028 Score=37.39 Aligned_cols=49 Identities=24% Similarity=0.625 Sum_probs=34.3
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-----hcCCCccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-----YSHYSCPICRCN 119 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 119 (135)
++...| +|.....+++.......|.-.||..|+..-- .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 445679 9999876555555666799999999995321 234569999764
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=93.08 E-value=0.19 Score=31.97 Aligned_cols=46 Identities=24% Similarity=0.630 Sum_probs=33.2
Q ss_pred CCCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-----------hcCCCcccccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-----------YSHYSCPICRC 118 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----------~~~~~CP~Cr~ 118 (135)
.+.++.|.||-+. ..+..-..|-..||..|+.+-+ .....|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3566789999864 4455556799999999999742 12346999964
No 103
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.69 E-value=0.024 Score=35.00 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=31.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICR 117 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr 117 (135)
.+++.|.||.+.-+..+ +..-..|+..||..|+...+. ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999988732222 234456999999999987763 223466553
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=92.62 E-value=0.21 Score=30.73 Aligned_cols=47 Identities=17% Similarity=0.448 Sum_probs=31.1
Q ss_pred Cccccccccccc-----cCCCeEEEcCCCCCcccHHHHHH------HH-hcCCCccccc
Q 047778 71 AEAECVICLSEF-----VEGDVIQVLERCKHGFHSQCIQK------WL-YSHYSCPICR 117 (135)
Q Consensus 71 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~fh~~Ci~~------wl-~~~~~CP~Cr 117 (135)
....|.+|+..- ..++.+..-..|+..||..|+.. .+ .....||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456899998753 22345666667999999999952 12 3344577664
No 105
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.46 E-value=0.022 Score=32.42 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=33.9
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHH----hcCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL----YSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~~~ 121 (135)
....| ||.....+++..+....|...||..|+..-- .....||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 34568 7988876665455555699999999986432 22345999976543
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.46 E-value=0.077 Score=30.39 Aligned_cols=48 Identities=25% Similarity=0.492 Sum_probs=32.0
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHH---------hcCCCccccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL---------YSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~~~ 121 (135)
...| ||...+..+. .+....|...||..|+.--. .....||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3457 8988876433 34444699999999994211 24567999976543
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.75 E-value=0.032 Score=34.53 Aligned_cols=45 Identities=29% Similarity=0.657 Sum_probs=31.3
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 118 (135)
.|.||.+.-.+++.+..-..|...||..|+++-+.. ...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653333455566679999999999765532 346999974
No 108
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.56 E-value=0.67 Score=27.40 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=37.4
Q ss_pred Ccccccccccccc---CCCeEEEcCCCCCcccHHHHHHHH-hcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFV---EGDVIQVLERCKHGFHSQCIQKWL-YSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 123 (135)
....|-||-+++- +++.....-.|+--.|..|++-=. ..+..||.|+..+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 4478999999863 333333333477789999997655 5567899999988743
No 109
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.16 E-value=0.25 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=30.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS 109 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 109 (135)
.....|.+|.+.+++..-|.--..=+|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3457899999999887655432234699999999998853
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.12 E-value=0.12 Score=29.82 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=31.8
Q ss_pred CccccccccccccCCCeEEEcC--CCCCcccHHHHHHHHh---------cCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKWLY---------SHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~---------~~~~CP~Cr~~~~ 121 (135)
....| ||-.....+..| ... .|...||..|+.---. ....||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 34568 898875554333 443 5999999999854211 2446999976543
No 111
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.56 E-value=0.089 Score=31.78 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=30.2
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHh---cCCCcccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY---SHYSCPICRC 118 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 118 (135)
..| ||-.....+. ++....|.-.||..|+..-.. ....||.|+.
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 8987765544 445556999999999865332 2346999964
No 112
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=90.49 E-value=0.23 Score=28.12 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=29.5
Q ss_pred CccccccccccccCCCeEEEcCC--CC-CcccHHHHHHHHh----cCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLER--CK-HGFHSQCIQKWLY----SHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~~~~ 121 (135)
+...| ||..... ++ .+...+ |. ..||..|+. |. ....||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 44567 8988642 43 444445 65 689999997 32 2345999976543
No 113
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=90.38 E-value=0.16 Score=29.50 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh------cCCCcccccccccC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY------SHYSCPICRCNCLF 122 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~~~~ 122 (135)
.+...|.+|...|..-..---...||.+||..|....+. ....|-.|-..+..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 344689999999975332223336999999999765421 11236666555443
No 114
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.90 E-value=0.029 Score=33.61 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=34.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCN 119 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~ 119 (135)
.++..|.||...-.. +.+.....|...||..|+.+=+. ....||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455689999886432 34556667999999999975442 23459999764
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.50 E-value=0.079 Score=29.82 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=31.0
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh---cCCCcccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY---SHYSCPICRC 118 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 118 (135)
.+...| ||...+. ++..+....|...||..|+..--. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345668 9988765 443445556999999999864321 2345998864
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=89.42 E-value=0.29 Score=28.90 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=36.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHH-------hcCCCcccccccccCCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-------YSHYSCPICRCNCLFSP 124 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-------~~~~~CP~Cr~~~~~~~ 124 (135)
.+...|.+|...|..-..---...||.+||..|....+ .....|-.|-..+....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 44568999999987543222334599999999976532 12235888876655443
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=89.35 E-value=0.22 Score=30.83 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=29.6
Q ss_pred ccccccccccc------CCCeEEEcCCCCCcccHHHHHHHH-------hcCCCccccc
Q 047778 73 AECVICLSEFV------EGDVIQVLERCKHGFHSQCIQKWL-------YSHYSCPICR 117 (135)
Q Consensus 73 ~~C~ICl~~~~------~~~~~~~l~~C~H~fh~~Ci~~wl-------~~~~~CP~Cr 117 (135)
+.|.||+..-. +++.++.-..|+..||..|+.... .....||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 47999987541 234555655699999999987542 2344577663
No 118
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=88.77 E-value=0.66 Score=23.71 Aligned_cols=19 Identities=5% Similarity=0.240 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 047778 5 LTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~ 23 (135)
+++++.+...+..|+||++
T Consensus 21 vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhheehhh
Confidence 3444444444455555554
No 119
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=88.48 E-value=0.059 Score=36.50 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=31.3
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCcccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCNC 120 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~ 120 (135)
++.|.+|.+. ++ +.....|.-.||..|+.+=+. ....||.|+...
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999864 33 344446888999999976442 234699998653
No 120
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.40 E-value=0.26 Score=29.36 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=29.1
Q ss_pred CccccccccccccCCCeEEEcCC--CC-CcccHHHHHHHH--hcCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLER--CK-HGFHSQCIQKWL--YSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl--~~~~~CP~Cr~~~~ 121 (135)
+...| ||..... ++ .+...+ |. ..||..|+.--- ..+..||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 44567 9988653 33 333445 55 689999997211 12346999976543
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=88.11 E-value=0.45 Score=27.72 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
.+...|.+|...|..-..---...||.+||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999999754322233359999999997654
No 122
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=87.84 E-value=0.2 Score=27.31 Aligned_cols=43 Identities=26% Similarity=0.618 Sum_probs=28.3
Q ss_pred CccccccccccccCCCeEEEcCC--CC-CcccHHHHHHHHhc----CCCcccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLER--CK-HGFHSQCIQKWLYS----HYSCPICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 118 (135)
+...| ||.... .+ ..+.-.+ |. ..||..|+. +.. +..||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 998864 33 4445556 66 699999997 322 345999964
No 123
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.17 E-value=0.73 Score=38.53 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCeEEEcCCCC-CcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCK-HGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.++..|+|=++-|.++ .+++ -| +.|-...|..|+..+.+||+=|.++...
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4567899999999887 5666 76 6899999999998888999999888654
No 124
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=87.02 E-value=0.37 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=23.7
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQK 105 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 105 (135)
..|.+|...|..-..---...||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999865322223335999999999754
No 125
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=86.96 E-value=0.21 Score=27.23 Aligned_cols=43 Identities=26% Similarity=0.614 Sum_probs=27.7
Q ss_pred CccccccccccccCCCeEEEcCC--CC-CcccHHHHHHHHh----cCCCcccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLER--CK-HGFHSQCIQKWLY----SHYSCPICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~ 118 (135)
+...| ||.... .+ ..+.-.+ |. ..||..|+. +. ....||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 898864 23 4445555 55 689999997 42 2345999864
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=86.45 E-value=0.41 Score=28.29 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=32.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh------cCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY------SHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~~~ 121 (135)
+...|.+|...|..-..---...||++||..|...+.. ....|-.|-..+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 34679999999865332223446999999999876531 1224666655443
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=85.50 E-value=0.39 Score=30.25 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=25.2
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
+...|.+|...|..-..---...||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346899999999753322233369999999996543
No 128
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=85.33 E-value=0.086 Score=33.14 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=30.3
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCN 119 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 119 (135)
...|..|-..|..-..---...||.+||..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 468999999986532222333699999999977655445567777543
No 129
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.32 E-value=0.7 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=24.6
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQK 105 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 105 (135)
.+...|.+|...|..-..---...||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 344689999999864322122335999999999654
No 130
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=84.13 E-value=1 Score=22.21 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhc
Q 047778 9 LALNTAIRCFLRDN 22 (135)
Q Consensus 9 ~~l~~~~~~~~~~~ 22 (135)
++|+..+.+|+.||
T Consensus 24 v~li~~l~~~~~rr 37 (38)
T 2k1k_A 24 AALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHeec
Confidence 33333333444433
No 131
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.10 E-value=0.54 Score=25.62 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=30.1
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPIC 116 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 116 (135)
..|--|...|.+.. .-.-+.|++.||.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986532 23467799999999954322333469987
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.54 E-value=0.2 Score=28.84 Aligned_cols=46 Identities=22% Similarity=0.638 Sum_probs=31.1
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----c-CCCcccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----S-HYSCPICRC 118 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~-~~~CP~Cr~ 118 (135)
+..|.||...- +++.+..-..|...||..|+.+=|. . ...||.|..
T Consensus 26 ~c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34788998653 2344556667999999999985442 2 346998864
No 133
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.01 E-value=1.6 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
.....|+.|-+.+..++.+.. -+..||.+| ..|-.|+..+...
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 345689999999887666543 567888877 5688888777643
No 134
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=82.73 E-value=1.7 Score=28.49 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=31.8
Q ss_pred CCCccccccccccccCCCeEEEcC--CCCCcccHHHHHHHHhc----------CCCccccc
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKWLYS----------HYSCPICR 117 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr 117 (135)
.+.+..|.||-+. ..+.... .|...||..||+..+.. ...|=+|.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 3456779999763 4555554 58899999999998743 23487774
No 135
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=82.57 E-value=0.5 Score=25.91 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=28.1
Q ss_pred CccccccccccccCCCeEEEcCC--CC-CcccHHHHHHHH--hcCCCcccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLER--CK-HGFHSQCIQKWL--YSHYSCPICRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl--~~~~~CP~Cr~ 118 (135)
+...| ||.... .+ ..+.-.+ |. ..||..|+.--- ..+..||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34567 998863 34 3445555 44 799999997211 12345999965
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.22 E-value=0.54 Score=32.35 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=25.0
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
+..|.+|...|..-..---...||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47899999998643222233469999999997543
No 137
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.81 E-value=0.15 Score=29.44 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=28.4
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----C-CCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----H-YSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 118 (135)
.|.||...- +++.+..-..|...||..|+.+-|.. . ..||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665543 23445555679999999999865532 2 46999875
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.70 E-value=0.6 Score=32.32 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=25.6
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
+..|.+|...|..-..---...||.+||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999998754322334469999999997654
No 139
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=81.64 E-value=1.8 Score=24.46 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=32.5
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-----cCCCccccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-----SHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~ 121 (135)
...| ||...+..++..+....|.-.||..|+.---. ....||.|+....
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 3445 89887764444555556999999999954321 2346999976543
No 140
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=81.53 E-value=0.31 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.579 Sum_probs=17.9
Q ss_pred CCCCcccHHHHHHHHhcCCCcccccccccCCC
Q 047778 93 RCKHGFHSQCIQKWLYSHYSCPICRCNCLFSP 124 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (135)
.||+.|. .-+.....||.|++...+.+
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4999991 11234467999998776553
No 141
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=81.43 E-value=0.47 Score=23.01 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 047778 5 LTCALALNTAIRCFLRDNN 23 (135)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~ 23 (135)
+++++.+...+..|+||++
T Consensus 17 lll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 17 VLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHHhheEEeecC
Confidence 3444444444556666553
No 142
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.23 E-value=0.23 Score=28.03 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=29.1
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----c-CCCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----S-HYSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~-~~~CP~Cr~ 118 (135)
.|.||...- +++.+..-..|...||..|+.+=|. . .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776542 2344556667999999999985442 2 346999864
No 143
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=79.59 E-value=1 Score=28.70 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=31.2
Q ss_pred CCcccccccccccc-CCCeEEEcCCCCCcccHHHHHHHHhc----CCCcccccc
Q 047778 70 GAEAECVICLSEFV-EGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRC 118 (135)
Q Consensus 70 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 118 (135)
.++..|.+|...|. ....-.....|.|.+|..|-..-... ...|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 45678999999984 22223455569999999986532111 113777765
No 144
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.10 E-value=1.3 Score=24.75 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=27.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
....|+-|-+.+...+.+... -|..||.+| ..|-.|+..+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 456899999888754443322 466788777 457777766654
No 145
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=78.36 E-value=0.63 Score=22.42 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=11.3
Q ss_pred CccccccccccccCC
Q 047778 71 AEAECVICLSEFVEG 85 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~ 85 (135)
+...||||+..+...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 347899999887654
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=77.93 E-value=1.3 Score=24.73 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=23.8
Q ss_pred cccccccccccCCCeEEEcCCCCCcccH-HHHHHHHhcCCCcccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHS-QCIQKWLYSHYSCPICRC 118 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~-~Ci~~wl~~~~~CP~Cr~ 118 (135)
..|..|...+..+.-. .. =|..||. .|...-+ ...|-.|..
T Consensus 28 F~C~~C~~~L~~~~~~-~~--~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHA-EH--EGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp CBCTTTCCBCCTTTEE-EE--TTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCccccCccCCCCceE-Cc--CCeEeeCHHHHHHHh--CccCCCcCC
Confidence 5677787777665322 11 4567777 5776543 345666653
No 147
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.45 E-value=0.52 Score=28.79 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=30.3
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----cCCCcccccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----SHYSCPICRCNC 120 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~ 120 (135)
.|.+|...-.+ +.+..-..|...||..|+.+-+. ....||.|+...
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 46677665332 34555557999999999986543 234599996543
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.65 E-value=2.7 Score=22.92 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=24.2
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|.-|-+.+..++.+.. . -+..||.+| ..|-.|..++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE-Y-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC-S-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE-E-CccccCccc--------CeECCCCCcCCC
Confidence 568888777765433322 1 466777766 456667666543
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.38 E-value=2.4 Score=24.08 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=29.0
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
....|+.|-..+...+.+.. -+..||.+| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 45689999999876665542 567888888 4566676665543
No 150
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=76.09 E-value=1.2 Score=26.89 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 047778 98 FHSQCIQKWLY 108 (135)
Q Consensus 98 fh~~Ci~~wl~ 108 (135)
||.+|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 151
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=75.91 E-value=2.1 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.491 Sum_probs=24.8
Q ss_pred CCCccccccccccccCCCeEEEcCCC-CCcccHHHHHHH
Q 047778 69 TGAEAECVICLSEFVEGDVIQVLERC-KHGFHSQCIQKW 106 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 106 (135)
.++..-|.||.++ ..++-+. | |-+||..|+...
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 3455679999987 3456665 9 789999998775
No 152
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=75.87 E-value=1.2 Score=26.80 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 047778 98 FHSQCIQKWLY 108 (135)
Q Consensus 98 fh~~Ci~~wl~ 108 (135)
||.+|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 153
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=75.22 E-value=0.64 Score=27.57 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=27.7
Q ss_pred CccccccccccccCCCeEEEcCCCC---CcccHHHHHHHH--hcCCCccc-ccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCK---HGFHSQCIQKWL--YSHYSCPI-CRC 118 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~-Cr~ 118 (135)
+...| ||.... .++ .+...+|. ..||..|+.--- .....||. |+.
T Consensus 25 ~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 44567 998753 243 44444555 689999986211 12446999 874
No 154
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=75.00 E-value=0.58 Score=32.54 Aligned_cols=45 Identities=27% Similarity=0.651 Sum_probs=27.4
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHh----c-CCCcccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY----S-HYSCPICRC 118 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~-~~~CP~Cr~ 118 (135)
..|.+|...- +++.+.....|...||..|+.+=+. . ...||.|+.
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3588887642 2334455667999999999985442 2 346999965
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.54 E-value=3.1 Score=23.54 Aligned_cols=40 Identities=20% Similarity=0.582 Sum_probs=29.6
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
....|+-|-+.+..++.+.. -+..||.+| ..|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45689999999877666554 467788877 56888877765
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.44 E-value=2.1 Score=23.40 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=23.2
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|+.|-+.+...+.+... =+..||.+| ..|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4677777777654433222 456677666 356666655543
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=74.28 E-value=0.64 Score=34.91 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-------cCCCcccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-------SHYSCPICRCNC 120 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~ 120 (135)
+...|.+|...|..-..--....||++||..|...++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34679999999864322122335999999999977641 123477775443
No 158
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=74.09 E-value=8.1 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCc
Q 047778 2 FCALTCALALNTAIRCFLRDNNNY 25 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~~~~ 25 (135)
+.+++|+++++.++.--++.+.+.
T Consensus 23 fA~vLfi~GI~iilS~KckCk~~q 46 (72)
T 2jo1_A 23 IAGILFILGILIVLSRRCRCKFNQ 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCccccCCCC
Confidence 345566666666655444444333
No 159
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=73.79 E-value=2.9 Score=31.37 Aligned_cols=45 Identities=22% Similarity=0.625 Sum_probs=31.5
Q ss_pred CCccccccccccccCCCeEEEcC--CCCCcccHHHHHHHHh----------cCCCcccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKWLY----------SHYSCPICRC 118 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~----------~~~~CP~Cr~ 118 (135)
+.+..|.+|-+. ..+.... .|...||..||...+. ....|=+|.-
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456678888764 3444544 6999999999999883 2346877753
No 160
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=73.79 E-value=3.4 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=30.8
Q ss_pred cccccccccccCCCeEEEcCCCCCc--ccHHHHHHHHh--cCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHG--FHSQCIQKWLY--SHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~--~~~~CP~Cr~~~~ 121 (135)
..|+|=...+..+ ++... |.|. |-..-+..... ....||+|...+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4699888887655 56665 9998 55554444432 3446999987764
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.63 E-value=3.2 Score=22.65 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=6.0
Q ss_pred cccccccccccC
Q 047778 73 AECVICLSEFVE 84 (135)
Q Consensus 73 ~~C~ICl~~~~~ 84 (135)
..|+.|-+.+..
T Consensus 6 ~~C~~C~~~I~~ 17 (72)
T 1x61_A 6 SGCGGCGEDVVG 17 (72)
T ss_dssp CCCSSSCSCCCS
T ss_pred CCCccCCCccCC
Confidence 345555555443
No 162
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.55 E-value=0.2 Score=30.95 Aligned_cols=47 Identities=21% Similarity=0.599 Sum_probs=31.5
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHhc----CCCccccccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYS----HYSCPICRCNCL 121 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (135)
.|.||...-.. +.+..-..|...||..|+.+=+.. ...||.|+..+.
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 57888775433 344555569999999999864422 335999876543
No 163
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.35 E-value=3.4 Score=23.23 Aligned_cols=41 Identities=22% Similarity=0.495 Sum_probs=27.9
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|+.|-+.+..++.+... =+..||.+| ..|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 35789998888765554332 467888777 467777776654
No 164
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=73.04 E-value=3.7 Score=30.54 Aligned_cols=47 Identities=15% Similarity=0.390 Sum_probs=31.7
Q ss_pred cccccccccccCCCeEEEcCCCCCc--ccHHHHHHHHh--cCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHG--FHSQCIQKWLY--SHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~--fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 122 (135)
..|+|=...+..+ ++... |.|. |-..-+..... ....||+|.+.+..
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 4599888777654 56665 9998 66555555443 34569999887643
No 165
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=72.74 E-value=1.1 Score=34.69 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=32.3
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHh-----cCCCccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY-----SHYSCPICRCN 119 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 119 (135)
+...| ||...+..+...+....|.-.||..|+.---. ....||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 33456 99988764454555567999999999954221 23469999753
No 166
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.61 E-value=3.5 Score=22.55 Aligned_cols=40 Identities=18% Similarity=0.561 Sum_probs=25.3
Q ss_pred ccccccccccccC--CCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 72 EAECVICLSEFVE--GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
...|+-|-+.+.. .+.+... -+..||.+| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCC
Confidence 4578888888764 2222222 567788777 46777776665
No 167
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=72.42 E-value=4.7 Score=23.13 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=26.9
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
....|.-|-+.+.. +.+ .. -+..||.+| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccC--------CEecCCCCCCCC
Confidence 34679999888765 322 22 567888877 467777777654
No 168
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=72.29 E-value=0.58 Score=24.56 Aligned_cols=41 Identities=22% Similarity=0.535 Sum_probs=26.3
Q ss_pred cccccccCCCeEEEcCCCCCcccHHHHHHHH---hcCCCcccccc
Q 047778 77 ICLSEFVEGDVIQVLERCKHGFHSQCIQKWL---YSHYSCPICRC 118 (135)
Q Consensus 77 ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 118 (135)
||..... ++..+.-..|+..||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6777654 33344445699999999986432 12345998864
No 169
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=68.68 E-value=2 Score=24.27 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=24.0
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|+.|-+.+..++.+.. -+..||.+| ..|-.|+.++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 3568888877766554433 456677666 346666665543
No 170
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.96 E-value=4.7 Score=22.32 Aligned_cols=40 Identities=23% Similarity=0.639 Sum_probs=25.4
Q ss_pred ccccccccccccC--CCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 72 EAECVICLSEFVE--GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
...|+.|-+.+.. .+.+... -+..||.+| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 3578889888774 2223222 567888887 45667766654
No 171
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.04 E-value=5.1 Score=21.61 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=30.2
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
....|+-|-..+...+.+... =+..||.+| ..|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCCC
Confidence 346899999998876655332 567788887 3677887776543
No 172
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=66.99 E-value=5.9 Score=19.48 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 047778 2 FCALTCALALNTAIRCFLRDN 22 (135)
Q Consensus 2 l~~~~~~~~l~~~~~~~~~~~ 22 (135)
++++..+++.++++.|.++|-
T Consensus 17 ~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 17 FGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777654
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.33 E-value=6.8 Score=22.51 Aligned_cols=40 Identities=20% Similarity=0.543 Sum_probs=23.3
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|+-|-+.+...+.+. . -+..||.+| ..|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCC
Confidence 356777777776555442 2 556677666 345555555443
No 174
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.79 E-value=4.8 Score=26.13 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCccccccccccccC--CCeEEEcCCCCCcccHHHHHHHHhcC--CCcccccc
Q 047778 70 GAEAECVICLSEFVE--GDVIQVLERCKHGFHSQCIQKWLYSH--YSCPICRC 118 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~ 118 (135)
.++..|.+|...|.. +.. .....|.|.+|..|-. |.... ..|-+|..
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCC-CcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 357899999998743 323 3444599999999972 33221 23666643
No 175
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.57 E-value=9.5 Score=21.28 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=25.5
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
....|+-|-+.+. ++.+. .-+..||.+| ..|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3467888888876 33222 2567788776 467777766653
No 176
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=61.07 E-value=3.5 Score=22.75 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=28.9
Q ss_pred CCccccccccccccCCCeEEEcC--CCCCcccHHHHHHHH---h-----cCCCcccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQVLE--RCKHGFHSQCIQKWL---Y-----SHYSCPICRC 118 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 118 (135)
++...| ||-.....+..| ... .|...||..|+.--- . .+..||.||.
T Consensus 8 e~~v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344557 897766555444 332 388899999983211 0 1346999974
No 177
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.03 E-value=8.5 Score=20.74 Aligned_cols=39 Identities=21% Similarity=0.576 Sum_probs=21.4
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|.-|-+.+.+ +.+.. -+..||.+| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCC
Confidence 3467777776653 33322 355666666 356666655543
No 178
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=60.49 E-value=2.4 Score=32.41 Aligned_cols=47 Identities=19% Similarity=0.437 Sum_probs=31.5
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHH-----hcCCCcccccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWL-----YSHYSCPICRCNC 120 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~ 120 (135)
...||...+..++..+....|.-.||..|+.--- .....||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 3448988876445455556799999999994221 1334699997643
No 179
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=60.16 E-value=0.52 Score=27.19 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=15.2
Q ss_pred CCCCcccHHHHHHHHhcCCCc
Q 047778 93 RCKHGFHSQCIQKWLYSHYSC 113 (135)
Q Consensus 93 ~C~H~fh~~Ci~~wl~~~~~C 113 (135)
.||+.||..|-..|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999999833 445
No 180
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.31 E-value=2.9 Score=24.10 Aligned_cols=40 Identities=15% Similarity=0.491 Sum_probs=27.3
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
....|+-|-+.+. ++.+.. -+..||.+| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA---LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEEE---CCccccccC--------CccCCCCCCCCC
Confidence 4467999988884 343332 577888877 567778777664
No 181
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.82 E-value=11 Score=20.26 Aligned_cols=37 Identities=22% Similarity=0.595 Sum_probs=22.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|+-|-+.+.. +.+ .. -+..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 467777777653 322 22 466777666 45666766654
No 182
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.04 E-value=3.5 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=22.6
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..||.|..+++-.. ++.+|..|-.. +.....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 68999988875322 12223333222 234456888877764
No 183
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=57.60 E-value=4.1 Score=25.04 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=22.8
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHh
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY 108 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 108 (135)
..|..|-..+..++..... =+..||..|....+.
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 5678888777555544333 467888888877763
No 184
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=57.22 E-value=5.8 Score=21.15 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=26.1
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|+.|-+.+. ++.+ .. =+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 357888888877 3332 22 567888777 467788777654
No 185
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=56.96 E-value=10 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=29.6
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
...|+-|-..+.....+.. -+..||.+| ..|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4579999999876543443 577899888 67889988885
No 186
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.85 E-value=8 Score=21.52 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=25.2
Q ss_pred CccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
....|+-|-+.+.. +.+ .. -+..||.+| ..|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KL-RDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--EC-SSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE--EE-CcceeCcCc--------CeeCCCCCCCC
Confidence 34679999888765 322 22 567888877 35666666553
No 187
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=56.70 E-value=11 Score=21.94 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=27.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|..|...+....-. .. =|..||..|...- -...|..|...|..
T Consensus 34 F~C~~C~~~L~~~~~~-~~--~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANETFV-AK--DNKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSSCCE-EE--TTEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcCeeE-Cc--CCEEEChhHhhhh--cCCccccCCCcccc
Confidence 4577777776433211 11 4567777776442 24578889887763
No 188
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.23 E-value=5.8 Score=22.94 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=5.2
Q ss_pred cccccccccc
Q 047778 74 ECVICLSEFV 83 (135)
Q Consensus 74 ~C~ICl~~~~ 83 (135)
.|+.|..++.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 4555555543
No 189
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=55.94 E-value=8.1 Score=21.40 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047778 3 CALTCALALNTAIRCFLR 20 (135)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (135)
.+++|+++++.++.--.+
T Consensus 25 A~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 25 GGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHcCccc
Confidence 344555555554433333
No 190
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.92 E-value=3.1 Score=19.21 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=18.6
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQC 102 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 102 (135)
+.|+.|-...-..+.+.. =|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE---CCeEecccC
Confidence 478888887655544432 577888887
No 191
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=54.72 E-value=4.6 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=16.7
Q ss_pred CccccccccccccCCCeEEEcC--CCCCcc
Q 047778 71 AEAECVICLSEFVEGDVIQVLE--RCKHGF 98 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~f 98 (135)
+-..|++|...+...+..-+.+ .||+.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 3467999999865433222333 477665
No 192
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.90 E-value=3.1 Score=19.01 Aligned_cols=10 Identities=30% Similarity=1.195 Sum_probs=6.3
Q ss_pred CCcccccccc
Q 047778 111 YSCPICRCNC 120 (135)
Q Consensus 111 ~~CP~Cr~~~ 120 (135)
..||+|+..+
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 4577777644
No 193
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=53.46 E-value=0.82 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.692 Sum_probs=20.3
Q ss_pred cccccccccC--CCeEEEcCCCCCcccHHHHHHH
Q 047778 75 CVICLSEFVE--GDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 75 C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
||=|-..+.. +......+.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 7755443322 1122355569999999998887
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=52.01 E-value=3 Score=23.34 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=13.8
Q ss_pred HHHHhcCCCcccccccccCC
Q 047778 104 QKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 104 ~~wl~~~~~CP~Cr~~~~~~ 123 (135)
+.|+..--.||.|+.++...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 34555666899999887654
No 195
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.52 E-value=9.4 Score=21.29 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=25.5
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|+-|-..+...+.+.. .=+..||.+| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 478889888873232222 1467788777 467777776653
No 196
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=51.43 E-value=11 Score=20.66 Aligned_cols=41 Identities=22% Similarity=0.575 Sum_probs=28.5
Q ss_pred ccccccccccccC---C-CeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccCC
Q 047778 72 EAECVICLSEFVE---G-DVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 72 ~~~C~ICl~~~~~---~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (135)
...|+-|-..+.. . +.+.. =+..||.+| ..|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCccc--------CEehhcCCCCCCC
Confidence 3579999998874 2 33333 467899877 5788888887643
No 197
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.07 E-value=0.99 Score=24.56 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=23.2
Q ss_pred cccccccccccCCCeEEEcC--C--CCCcccHHHHHHHH
Q 047778 73 AECVICLSEFVEGDVIQVLE--R--CKHGFHSQCIQKWL 107 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~--~--C~H~fh~~Ci~~wl 107 (135)
..||-|...++..+....+. . |++.|+..|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 57888888877654322222 2 77888888877775
No 198
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=50.98 E-value=10 Score=20.23 Aligned_cols=39 Identities=15% Similarity=0.446 Sum_probs=25.9
Q ss_pred cccccccccccCC-CeEEEcCCCCCccc--HHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEG-DVIQVLERCKHGFH--SQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~-~~~~~l~~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|+-|-+.+..+ +.+.. -|..|| .+| ..|-.|+.++..
T Consensus 3 ~~C~~C~~~I~~~~~~v~a---~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY---NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCEEEE---TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceEEEE---CCCccCCCCCC--------EECCCCCCcCCC
Confidence 4688888887754 33332 467888 777 567777777653
No 199
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=49.51 E-value=13 Score=17.48 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047778 4 ALTCALALNTAIRCFLRD 21 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~ 21 (135)
+-+++++++.+..||+.|
T Consensus 15 gdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 15 GDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhheec
Confidence 334444455555455443
No 200
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=49.09 E-value=2.7 Score=23.40 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=14.0
Q ss_pred HHHHhcCCCcccccccccCC
Q 047778 104 QKWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 104 ~~wl~~~~~CP~Cr~~~~~~ 123 (135)
+.|+..--.||.|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 34566666799999877654
No 201
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.46 E-value=14 Score=20.56 Aligned_cols=37 Identities=24% Similarity=0.723 Sum_probs=23.3
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|+-|-+.+. ++.+.. -+..||.+| ..|-.|+..+.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCC
Confidence 47999988877 333332 567788777 34555555443
No 202
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=48.27 E-value=33 Score=20.68 Aligned_cols=29 Identities=28% Similarity=0.663 Sum_probs=19.0
Q ss_pred CCCCcccHHHH---H---HHHhc-----CCCccccccccc
Q 047778 93 RCKHGFHSQCI---Q---KWLYS-----HYSCPICRCNCL 121 (135)
Q Consensus 93 ~C~H~fh~~Ci---~---~wl~~-----~~~CP~Cr~~~~ 121 (135)
.|+..||..|+ + .-+.. ...||.|...-.
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 49999999996 2 12222 356999965433
No 203
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.03 E-value=11 Score=20.15 Aligned_cols=37 Identities=22% Similarity=0.570 Sum_probs=18.9
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|+-|-+.+.. +.+.. -+..||.+| ..|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 456666666543 23322 345566555 34555655554
No 204
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=44.39 E-value=16 Score=20.61 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhh
Q 047778 10 ALNTAIRCFLRD 21 (135)
Q Consensus 10 ~l~~~~~~~~~~ 21 (135)
+|++..+||++-
T Consensus 29 ~li~gcwcylrl 40 (90)
T 1zza_A 29 ALILGCWCYLRL 40 (90)
T ss_dssp HHHHHHHTTTSS
T ss_pred HHHHHHHHHHHH
Confidence 344444555443
No 205
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.10 E-value=20 Score=21.73 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=32.7
Q ss_pred cccccccccccC-CCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVE-GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|..|-..+.+ +... .. .=|..||..|...-+..+..|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 468888888753 1112 12 256789999998877655589999887764
No 206
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.44 E-value=20 Score=19.55 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=13.3
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHH
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQC 102 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 102 (135)
..|+-|-..+.. +.+ . .-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~C 31 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSC 31 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTT
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCc
Confidence 456666666543 211 1 2455666655
No 207
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.77 E-value=16 Score=21.87 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=20.0
Q ss_pred cccccccccccC-CCeEEEcCCCCCcccHHHHHHHHh
Q 047778 73 AECVICLSEFVE-GDVIQVLERCKHGFHSQCIQKWLY 108 (135)
Q Consensus 73 ~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~ 108 (135)
..|..|-..+.+ +... .. .=|..||..|...-+.
T Consensus 31 F~C~~C~~~L~~~g~~~-~~-~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRL-YY-KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCC-CC-BTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCee-EE-ECCeeechHHHHHHhC
Confidence 567777777753 2222 11 1466788888777654
No 208
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=41.69 E-value=5.9 Score=22.37 Aligned_cols=9 Identities=11% Similarity=0.549 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 047778 5 LTCALALNT 13 (135)
Q Consensus 5 ~~~~~~l~~ 13 (135)
++|+++++.
T Consensus 29 vLfi~GI~i 37 (74)
T 2zxe_G 29 VLCVIGIII 37 (74)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 209
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.41 E-value=20 Score=19.85 Aligned_cols=39 Identities=15% Similarity=0.610 Sum_probs=24.8
Q ss_pred ccccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
...|+-|-..+.+ ..+.. -+..||.+| .+|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccCC
Confidence 3578888887763 32322 466788766 467777777653
No 210
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.66 E-value=28 Score=19.20 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=27.6
Q ss_pred CccccccccccccCCCeEEEcCCCC---CcccHHHHHHHH--hcCCCcccccccc
Q 047778 71 AEAECVICLSEFVEGDVIQVLERCK---HGFHSQCIQKWL--YSHYSCPICRCNC 120 (135)
Q Consensus 71 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~Cr~~~ 120 (135)
+...| ||.... .++. +...+|. ..||..|+.--- .....||.|+...
T Consensus 5 ~~~yC-~C~~~~-~g~M-I~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGEM-VGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC-CSSE-ECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC-CCCE-eEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34456 687763 3433 3333453 689999997311 1234599997654
No 211
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=40.27 E-value=18 Score=23.82 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=20.8
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICR 117 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 117 (135)
..|..|...+....-. .. =|..||..|...-+. ..|-.|.
T Consensus 35 F~C~~C~~~L~~~~~~-~~--~g~~yC~~cy~~~f~--~~c~~c~ 74 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVA-VH--GDEIYCKSCYGKKYG--PKGKGKG 74 (192)
T ss_dssp CBCTTTCCBCCSSSEE-EE--TTEEEEHHHHHHHHS--CCCCCCC
T ss_pred CcCcccCCcCCCCeeE-ec--CCEeeChhhhHhhcC--ccccccc
Confidence 4566666666554211 11 355677777666442 3455553
No 212
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.15 E-value=21 Score=21.71 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=25.3
Q ss_pred cccccccccccC-CCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVE-GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|..|-..+.. +...... =|..||..|...-+.....|..|...|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccC
Confidence 456667666643 2222221 3556777776665433336777766654
No 213
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.70 E-value=21 Score=19.62 Aligned_cols=37 Identities=19% Similarity=0.549 Sum_probs=21.8
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|+-|-+.+... .+ .. =+..||.+| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~-~v--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GV--TY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CE--ES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EE--EE-CCchhhhhh--------CCcccCCCcCC
Confidence 4677777776542 22 22 466777666 45666666654
No 214
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=39.41 E-value=1.2 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=8.5
Q ss_pred cccHHHHHHHHh
Q 047778 97 GFHSQCIQKWLY 108 (135)
Q Consensus 97 ~fh~~Ci~~wl~ 108 (135)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 477888777763
No 215
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=38.65 E-value=21 Score=19.31 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=20.1
Q ss_pred CCCcccccccccc-ccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 69 TGAEAECVICLSE-FVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 69 ~~~~~~C~ICl~~-~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
.++...|.||+.. |.++..-.-.- |.-.||..|-..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCccccc-cCCeeecccCCEe
Confidence 4566789999985 55552211111 3334555554444
No 216
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=37.00 E-value=3 Score=23.29 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=11.6
Q ss_pred HHhcCCCcccccccccCC
Q 047778 106 WLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 106 wl~~~~~CP~Cr~~~~~~ 123 (135)
|+..--.||.|+.++...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 344445788888876643
No 217
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.93 E-value=12 Score=21.24 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCCccccccccccccC-CCeEEEcCCCCCcccHHHH
Q 047778 69 TGAEAECVICLSEFVE-GDVIQVLERCKHGFHSQCI 103 (135)
Q Consensus 69 ~~~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci 103 (135)
...+..|+.|.+.|-. ...-.+.+.|.|..|.+|=
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4567889999999742 1111244458888887774
No 218
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.89 E-value=27 Score=19.12 Aligned_cols=38 Identities=18% Similarity=0.489 Sum_probs=23.8
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|+-|-..+.+ +.+.. -+..||.+| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 468888777764 33322 456677766 467777776654
No 219
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=34.36 E-value=25 Score=23.03 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=23.1
Q ss_pred cccccccccccC-CCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVE-GDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|..|...+.. +...... =|..||..|...-+.....|..|...|.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCccc
Confidence 446666555543 2222221 3455666666554432224666665554
No 220
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=33.82 E-value=3 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=10.6
Q ss_pred HhcCCCcccccccccCC
Q 047778 107 LYSHYSCPICRCNCLFS 123 (135)
Q Consensus 107 l~~~~~CP~Cr~~~~~~ 123 (135)
+..--.||.|+.++...
T Consensus 5 LL~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFD 21 (68)
T ss_dssp CEEECBCTTTCCBCEEE
T ss_pred HhhheECCCCCCcCeEe
Confidence 33344688888776543
No 221
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=32.30 E-value=11 Score=23.80 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=17.7
Q ss_pred ccccccccccccCCC-eEEEcCCCCCcc
Q 047778 72 EAECVICLSEFVEGD-VIQVLERCKHGF 98 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~-~~~~l~~C~H~f 98 (135)
-..||-|-++|.-.+ ...+.|.|+|-+
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 468999999875322 334556677754
No 222
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=32.27 E-value=2.6 Score=30.64 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCccccccccccccCCCeEEE-cCCCC--CcccHHHHHHHHhcCCCccccccc
Q 047778 70 GAEAECVICLSEFVEGDVIQV-LERCK--HGFHSQCIQKWLYSHYSCPICRCN 119 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~-l~~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~ 119 (135)
.....|++|-..-..+ .++. -..=| +.+|.-|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4457899998864332 1110 00012 456667777787777889999664
No 223
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=31.44 E-value=3.3 Score=23.23 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=11.2
Q ss_pred HHhcCCCcccccccccCC
Q 047778 106 WLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 106 wl~~~~~CP~Cr~~~~~~ 123 (135)
|+..--.||.|+.++...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCBCTTTCCBEEEE
T ss_pred HHhhheECCCCCCcCEEe
Confidence 334445688888876543
No 224
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.12 E-value=41 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=16.0
Q ss_pred CCcccHHHHHHHHhcCCCcccccccccC
Q 047778 95 KHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 95 ~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
|..||..|...- -...|..|...+..
T Consensus 106 g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 106 ESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CEeeecCccccc--cccccccCCCccCC
Confidence 445666665542 23568888877764
No 225
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=30.73 E-value=9.4 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=16.4
Q ss_pred EcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 90 VLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 90 ~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
....|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 344588888532 22347999987753
No 226
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.06 E-value=28 Score=21.03 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCcccccccccC
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCLF 122 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (135)
..|..|...+... ..... =|..||..|...- ....|..|...|..
T Consensus 31 F~C~~C~~~L~~~-~f~~~--~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE-IYVMV--NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS-EEEEE--TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC-EEEeE--CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 4577777766532 22121 4666777776553 23567777776663
No 227
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=29.57 E-value=40 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=17.8
Q ss_pred ccccccccccccCCCeEEEcCCCCCccc
Q 047778 72 EAECVICLSEFVEGDVIQVLERCKHGFH 99 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh 99 (135)
...|..|... +....-|. |||++|
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCC---CCeeeeee-cCcccc
Confidence 4579999876 44455676 999987
No 228
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=27.03 E-value=52 Score=16.44 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=13.2
Q ss_pred ccccccccc-ccc--CCCeEEEcCCCCCccc
Q 047778 72 EAECVICLS-EFV--EGDVIQVLERCKHGFH 99 (135)
Q Consensus 72 ~~~C~ICl~-~~~--~~~~~~~l~~C~H~fh 99 (135)
...|+.|-. ++. ....-.+.+.||.+|-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 346888855 322 1211223334666653
No 229
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=26.34 E-value=7.9 Score=23.16 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=13.2
Q ss_pred HHHhcCCCcccccccccCC
Q 047778 105 KWLYSHYSCPICRCNCLFS 123 (135)
Q Consensus 105 ~wl~~~~~CP~Cr~~~~~~ 123 (135)
.||..--.||+|+.++...
T Consensus 3 ~~LLdILaCP~cK~pL~l~ 21 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSLL 21 (97)
T ss_dssp TTTCSSCCCCTTSSCCEEC
T ss_pred hHHhhheECCCCCCccccc
Confidence 3555556799999877544
No 230
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=25.19 E-value=88 Score=17.35 Aligned_cols=36 Identities=14% Similarity=0.466 Sum_probs=24.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCCcccHHHHHHH
Q 047778 70 GAEAECVICLSEFVEGDVIQVLERCKHGFHSQCIQKW 106 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 106 (135)
..+..|-+|.+.-.....-.-+. |.-.||..|+..+
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~-C~~s~C~~hl~~~ 63 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 63 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccC-ccchhhhhhhHhh
Confidence 34578999986431222334454 9999999999874
No 231
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.56 E-value=28 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=13.4
Q ss_pred EcCCCCCcccHHHHHHHHhcCCCccccccc
Q 047778 90 VLERCKHGFHSQCIQKWLYSHYSCPICRCN 119 (135)
Q Consensus 90 ~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 119 (135)
+.+.|||++-. ..-..||+|..+
T Consensus 173 ~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 173 LCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp ECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EECCCCCEEcC-------cCCCCCCCCCCC
Confidence 34447777542 122479999764
No 232
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=24.56 E-value=66 Score=26.26 Aligned_cols=39 Identities=26% Similarity=0.594 Sum_probs=27.7
Q ss_pred CCccccccccccccC-------CCeEEEcCCCCCcccHHHHHHHHhc
Q 047778 70 GAEAECVICLSEFVE-------GDVIQVLERCKHGFHSQCIQKWLYS 109 (135)
Q Consensus 70 ~~~~~C~ICl~~~~~-------~~~~~~l~~C~H~fh~~Ci~~wl~~ 109 (135)
+-..+|++|.....+ .....-+. ||-.||.+|.+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 11 GCTATCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRS 56 (776)
T ss_dssp TCCCSSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHST
T ss_pred CCcccccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhcc
Confidence 345679999887643 12345566 9989999999987754
No 233
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=23.61 E-value=2.7 Score=20.81 Aligned_cols=15 Identities=27% Similarity=0.806 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCCccc
Q 047778 101 QCIQKWLYSHYSCPI 115 (135)
Q Consensus 101 ~Ci~~wl~~~~~CP~ 115 (135)
.||..|++.+.+|-.
T Consensus 19 kCiyAWYnqq~sCq~ 33 (43)
T 2roo_A 19 NCVYAWYNQQSSCER 33 (43)
T ss_dssp EEEECGGGSSEEEEC
T ss_pred HHHHHHHccCCchhh
Confidence 588889988887743
No 234
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.28 E-value=19 Score=21.49 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=5.1
Q ss_pred Ccccccccc
Q 047778 112 SCPICRCNC 120 (135)
Q Consensus 112 ~CP~Cr~~~ 120 (135)
.||+|.+.+
T Consensus 49 ~CPvCgs~l 57 (112)
T 1l8d_A 49 KCPVCGREL 57 (112)
T ss_dssp ECTTTCCEE
T ss_pred CCCCCCCcC
Confidence 466665544
No 235
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=23.04 E-value=35 Score=19.65 Aligned_cols=34 Identities=32% Similarity=0.623 Sum_probs=21.4
Q ss_pred ccccccccccccCCCeEEE-cCCCCCcccHHHHHHH
Q 047778 72 EAECVICLSEFVEGDVIQV-LERCKHGFHSQCIQKW 106 (135)
Q Consensus 72 ~~~C~ICl~~~~~~~~~~~-l~~C~H~fh~~Ci~~w 106 (135)
...|.||-+. ..|..+.- ...|.-.||..|...-
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 4689999653 11333321 2248889999998764
No 236
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=22.43 E-value=20 Score=21.60 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=26.4
Q ss_pred ccccccccccCCCeEEEcCCCCCcccHHHHHHHHh--------cCCCcccccc
Q 047778 74 ECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLY--------SHYSCPICRC 118 (135)
Q Consensus 74 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~ 118 (135)
.|..|......++.+.....|...||..|...... ....||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34445444444444444456999999999864321 1134999964
No 237
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=21.47 E-value=37 Score=17.76 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccc
Q 047778 4 ALTCALALNTAIRCFLRDNNNYDQQ 28 (135)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~ 28 (135)
..++.++|.+.+-+..-...+++..
T Consensus 17 ~~~fl~vlAl~IHfilLSt~~fNWl 41 (52)
T 1xrd_A 17 LATFLFVLALLIHFILLSTERFNWL 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCcccc
Confidence 3445555555565555555555433
No 238
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=21.34 E-value=2.7 Score=20.71 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCCcc
Q 047778 101 QCIQKWLYSHYSCP 114 (135)
Q Consensus 101 ~Ci~~wl~~~~~CP 114 (135)
.||..|++.+.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (42)
T 1qdp_A 19 KCIYAWYNQQGSCQ 32 (42)
T ss_dssp EEECCSSCSCCEEE
T ss_pred HHHHHHHccCCchH
Confidence 58888988877774
No 239
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.90 E-value=1.1e+02 Score=16.49 Aligned_cols=37 Identities=19% Similarity=0.547 Sum_probs=18.0
Q ss_pred cccccccccccCCCeEEEcCCCCCcccHHHHHHHHhcCCCccccccccc
Q 047778 73 AECVICLSEFVEGDVIQVLERCKHGFHSQCIQKWLYSHYSCPICRCNCL 121 (135)
Q Consensus 73 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (135)
..|+.|-+.+. ++.+ . .-+..||.+| ..|-.|...+.
T Consensus 16 ~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--V-AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCB--C-CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEE--E-ECCceecccc--------CCccCCCCccC
Confidence 35666666555 2211 1 1355566555 34555555553
Done!