BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047783
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 44 PSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGKS 86
P + ++ G+++RGF+FGP +A A+G FVP+RK KLPG+
Sbjct: 56 PEVKIDYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGEC 98
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 53 GIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGKSL 87
G +ARGF+FG P+A +G FVP+RKP KLP +++
Sbjct: 69 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETI 103
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 25 PISHRFSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84
P S R ++ L RH L + + ++ G+ +RGF+FGP +A +G V +RK KLPG
Sbjct: 36 PASFRAAIGLLARH-LKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPG 94
Query: 85 KSL 87
+L
Sbjct: 95 PTL 97
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 53 GIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGK 85
GI++RGFI G +A ++G FV +RK KLPG
Sbjct: 59 GIESRGFILGGIVANSLGVGFVALRKAGKLPGD 91
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 45 SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84
SP+ + G ARGF+FGP IA +G FV MRK K G
Sbjct: 70 SPAPTHILGFDARGFLFGPMIAVELGIPFVLMRKADKNAG 109
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 45 SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84
SP+ + G ARGF+FGP IA + FV MRK K G
Sbjct: 69 SPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAG 108
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 33 SLSFRHKLFSEPSPSVRFLQGIKARGFIFGP 63
++ F K++S+P P +++L+ I+ G GP
Sbjct: 133 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGP 163
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 33 SLSFRHKLFSEPSPSVRFLQGIKARGFIFGP 63
++ F K++S+P P +++L+ I+ G GP
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGP 162
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 33 SLSFRHKLFSEPSPSVRFLQGIKARGFIFGP 63
++ F K++S+P P +++L+ I+ G GP
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGP 162
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase
Of Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 23 WTPISHRFSVSLSFRHKLFSEPSPSVRFLQGIKARG 58
W P+ HR S+ S KL + SP+V + G+ ARG
Sbjct: 14 WVPVDHRPSLPRSCGPKLTN--SPTVIVMVGLPARG 47
>pdb|1V7V|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase
pdb|1V7W|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase In Complex With Glcnac
pdb|1V7X|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase In Complex With Glcnac And Sulfate
Length = 807
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 28 HRFS-VSLSFRHKLFSEPSPSVRFL----QGIKARGFIFGPPIAWA 68
H FS L FS P+ + F+ QG+K G IF P WA
Sbjct: 604 HLFSPYGLHLNAPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWA 649
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,760,912
Number of Sequences: 62578
Number of extensions: 90346
Number of successful extensions: 131
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 11
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)