Query 047783
Match_columns 90
No_of_seqs 136 out of 1008
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 99.9 8.8E-29 1.9E-33 183.5 3.3 81 8-89 11-101 (183)
2 COG0503 Apt Adenine/guanine ph 99.8 1.7E-19 3.7E-24 131.1 4.6 83 5-88 5-94 (179)
3 PLN02293 adenine phosphoribosy 99.7 9.3E-18 2E-22 123.1 4.0 81 7-88 16-103 (187)
4 TIGR01090 apt adenine phosphor 99.3 1.2E-12 2.7E-17 93.0 5.3 73 14-87 11-86 (169)
5 PRK09219 xanthine phosphoribos 99.3 4.7E-12 1E-16 93.2 5.6 65 18-83 18-86 (189)
6 TIGR01744 XPRTase xanthine pho 99.2 3.4E-11 7.3E-16 88.7 5.6 55 30-84 31-87 (191)
7 PRK09213 pur operon repressor; 99.2 4.1E-11 9E-16 93.1 5.6 72 16-88 98-172 (271)
8 TIGR01743 purR_Bsub pur operon 99.2 5E-11 1.1E-15 92.6 5.5 71 17-88 97-170 (268)
9 PRK02304 adenine phosphoribosy 99.1 1.9E-10 4E-15 82.1 4.8 72 14-86 16-90 (175)
10 PRK13810 orotate phosphoribosy 99.0 3.2E-10 6.8E-15 83.4 4.9 68 16-84 40-110 (187)
11 PRK12560 adenine phosphoribosy 98.9 2.1E-09 4.5E-14 78.6 4.1 65 13-79 15-83 (187)
12 PRK13809 orotate phosphoribosy 98.8 6.1E-09 1.3E-13 77.7 5.0 66 20-86 38-106 (206)
13 PRK08558 adenine phosphoribosy 98.7 1.6E-08 3.4E-13 76.7 4.8 71 9-82 73-146 (238)
14 PRK05500 bifunctional orotidin 98.4 2.2E-07 4.7E-12 77.2 4.6 62 23-85 319-382 (477)
15 PRK06031 phosphoribosyltransfe 98.4 2.2E-07 4.8E-12 70.6 3.9 62 22-84 55-122 (233)
16 PRK13811 orotate phosphoribosy 98.3 1.2E-06 2.5E-11 63.1 5.7 61 23-85 34-94 (170)
17 PRK02277 orotate phosphoribosy 98.3 7.2E-07 1.6E-11 65.6 4.5 64 15-79 49-117 (200)
18 PRK00455 pyrE orotate phosphor 98.2 1.4E-06 3.1E-11 63.5 4.3 61 23-84 37-101 (202)
19 PRK07322 adenine phosphoribosy 98.1 4.3E-06 9.3E-11 60.4 5.0 75 6-81 6-86 (178)
20 PRK13812 orotate phosphoribosy 98.0 5.6E-06 1.2E-10 60.2 4.1 56 29-84 40-95 (176)
21 TIGR01367 pyrE_Therm orotate p 98.0 7.6E-06 1.6E-10 59.9 4.0 57 23-80 31-91 (187)
22 TIGR00336 pyrE orotate phospho 97.9 1.3E-05 2.8E-10 57.5 4.4 62 23-85 28-97 (173)
23 PRK09177 xanthine-guanine phos 97.3 0.00022 4.7E-09 50.9 3.3 43 32-74 13-58 (156)
24 PF00156 Pribosyltran: Phospho 97.2 0.00023 4.9E-09 46.4 2.5 48 32-79 8-59 (125)
25 COG0856 Orotate phosphoribosyl 95.3 0.029 6.3E-07 42.9 4.4 34 44-77 83-116 (203)
26 PRK01259 ribose-phosphate pyro 95.0 0.044 9.4E-07 43.0 4.7 50 36-85 147-196 (309)
27 COG0461 PyrE Orotate phosphori 94.9 0.045 9.8E-07 41.5 4.2 54 30-84 41-100 (201)
28 TIGR01251 ribP_PPkin ribose-ph 94.2 0.084 1.8E-06 41.2 4.5 47 36-82 148-194 (308)
29 PRK00934 ribose-phosphate pyro 91.8 0.27 5.8E-06 38.0 4.1 48 35-83 143-190 (285)
30 PLN02238 hypoxanthine phosphor 89.1 0.57 1.2E-05 34.3 3.6 25 47-71 35-59 (189)
31 PRK09162 hypoxanthine-guanine 87.2 0.84 1.8E-05 32.9 3.5 41 33-73 21-66 (181)
32 PRK05205 bifunctional pyrimidi 86.6 0.69 1.5E-05 33.1 2.7 39 32-70 10-54 (176)
33 TIGR01203 HGPRTase hypoxanthin 84.7 1.2 2.7E-05 31.7 3.2 27 47-73 26-52 (166)
34 PRK07349 amidophosphoribosyltr 84.4 1.3 2.9E-05 37.4 3.8 57 23-79 283-346 (500)
35 PRK09123 amidophosphoribosyltr 84.3 1.4 3E-05 36.9 3.8 58 23-80 266-330 (479)
36 PRK07199 phosphoribosylpyropho 83.8 2.1 4.4E-05 33.6 4.4 45 36-81 150-194 (301)
37 PRK02269 ribose-phosphate pyro 82.1 2.5 5.4E-05 33.4 4.3 45 36-80 152-198 (320)
38 COG2236 Predicted phosphoribos 81.9 3.1 6.8E-05 31.3 4.6 31 44-74 26-57 (192)
39 PRK00553 ribose-phosphate pyro 79.5 2.5 5.4E-05 33.8 3.5 34 49-82 170-203 (332)
40 PRK15423 hypoxanthine phosphor 74.6 3.4 7.3E-05 30.1 2.8 43 31-73 11-60 (178)
41 PRK06827 phosphoribosylpyropho 74.1 4.9 0.00011 33.0 3.9 34 47-80 207-240 (382)
42 PRK08057 cobalt-precorrin-6x r 70.4 7.9 0.00017 29.7 4.1 39 45-84 188-228 (248)
43 cd01714 ETF_beta The electron 69.4 6 0.00013 29.0 3.1 55 20-75 80-140 (202)
44 PRK03092 ribose-phosphate pyro 67.9 9.1 0.0002 30.1 4.1 32 49-80 150-182 (304)
45 TIGR00715 precor6x_red precorr 65.2 12 0.00025 28.9 4.1 40 45-85 195-237 (256)
46 COG3535 Uncharacterized conser 63.9 8.8 0.00019 31.8 3.4 47 30-76 77-126 (357)
47 PRK02458 ribose-phosphate pyro 63.6 7.6 0.00017 30.9 2.9 31 49-79 171-201 (323)
48 PRK04923 ribose-phosphate pyro 63.6 15 0.00034 29.1 4.6 36 48-83 167-203 (319)
49 PRK06781 amidophosphoribosyltr 63.3 7.3 0.00016 32.7 2.9 52 23-74 254-310 (471)
50 PLN02440 amidophosphoribosyltr 56.3 12 0.00025 31.4 2.9 41 39-79 266-309 (479)
51 PRK08525 amidophosphoribosyltr 56.0 16 0.00034 30.3 3.6 57 23-79 246-309 (445)
52 PRK07847 amidophosphoribosyltr 55.6 9.5 0.00021 32.4 2.3 53 23-75 273-330 (510)
53 PRK05793 amidophosphoribosyltr 55.5 17 0.00037 30.3 3.8 53 23-75 259-316 (469)
54 PF04122 CW_binding_2: Putativ 52.7 6.9 0.00015 24.7 0.8 40 47-88 24-66 (92)
55 PRK02812 ribose-phosphate pyro 50.3 33 0.00073 27.4 4.5 46 36-81 168-214 (330)
56 PTZ00271 hypoxanthine-guanine 49.0 24 0.00052 26.6 3.4 41 30-70 29-80 (211)
57 COG1926 Predicted phosphoribos 46.6 50 0.0011 25.8 4.8 49 32-80 9-60 (220)
58 TIGR01134 purF amidophosphorib 46.3 20 0.00043 29.6 2.8 53 23-75 244-301 (442)
59 PLN02369 ribose-phosphate pyro 43.3 27 0.00059 27.4 3.0 31 50-80 154-185 (302)
60 PF00391 PEP-utilizers: PEP-ut 41.9 62 0.0014 20.2 4.0 50 15-77 9-60 (80)
61 PF06032 DUF917: Protein of un 40.2 16 0.00036 29.4 1.4 45 32-76 75-122 (353)
62 PRK08341 amidophosphoribosyltr 39.3 56 0.0012 27.2 4.4 57 23-79 242-305 (442)
63 COG2099 CobK Precorrin-6x redu 39.1 51 0.0011 26.2 3.9 34 46-79 195-231 (257)
64 PRK07631 amidophosphoribosyltr 38.8 26 0.00056 29.5 2.4 53 23-75 254-311 (475)
65 PRK03359 putative electron tra 38.7 42 0.00092 26.0 3.4 30 46-75 111-144 (256)
66 cd01715 ETF_alpha The electron 37.5 52 0.0011 22.9 3.4 44 31-75 68-112 (168)
67 PF02571 CbiJ: Precorrin-6x re 35.9 59 0.0013 24.9 3.8 34 45-80 192-229 (249)
68 PRK12342 hypothetical protein; 34.9 50 0.0011 25.6 3.3 29 47-75 109-141 (254)
69 cd03786 GT1_UDP-GlcNAc_2-Epime 32.3 62 0.0013 24.0 3.3 31 46-76 87-118 (363)
70 PF13477 Glyco_trans_4_2: Glyc 32.1 64 0.0014 20.6 3.0 31 45-75 72-104 (139)
71 TIGR03884 sel_bind_Methan sele 32.0 51 0.0011 21.8 2.5 40 15-55 8-50 (74)
72 PF00731 AIRC: AIR carboxylase 31.8 1.5E+02 0.0032 21.5 5.1 57 18-77 27-85 (150)
73 COG0462 PrsA Phosphoribosylpyr 30.8 41 0.0009 27.3 2.3 33 49-81 165-197 (314)
74 cd01985 ETF The electron trans 30.5 56 0.0012 22.8 2.7 44 31-75 76-120 (181)
75 PRK07272 amidophosphoribosyltr 29.7 49 0.0011 28.0 2.6 36 39-74 276-312 (484)
76 PF04230 PS_pyruv_trans: Polys 29.4 45 0.00097 22.8 2.0 26 47-76 257-282 (286)
77 TIGR00236 wecB UDP-N-acetylglu 28.7 76 0.0017 24.0 3.3 32 45-76 84-116 (365)
78 PRK06388 amidophosphoribosyltr 28.5 56 0.0012 27.5 2.7 53 23-75 262-319 (474)
79 PRK11638 lipopolysaccharide bi 26.1 46 0.00099 26.8 1.8 22 59-80 320-341 (342)
80 TIGR00215 lpxB lipid-A-disacch 25.8 80 0.0017 24.9 3.1 32 45-76 87-119 (385)
81 PF14572 Pribosyl_synth: Phosp 25.8 63 0.0014 24.3 2.3 31 50-80 6-36 (184)
82 PRK00025 lpxB lipid-A-disaccha 25.2 1.1E+02 0.0024 23.0 3.6 33 45-77 83-116 (380)
83 TIGR01426 MGT glycosyltransfer 25.0 97 0.0021 23.8 3.3 30 45-76 90-119 (392)
84 COG0763 LpxB Lipid A disacchar 23.9 79 0.0017 26.4 2.8 33 37-69 73-107 (381)
85 PF03699 UPF0182: Uncharacteri 23.2 23 0.0005 31.9 -0.4 13 5-17 640-652 (774)
86 PLN00142 sucrose synthase 22.5 1.1E+02 0.0024 27.9 3.6 33 45-77 406-438 (815)
87 TIGR02470 sucr_synth sucrose s 21.9 1.2E+02 0.0025 27.5 3.6 32 45-76 383-414 (784)
88 PF00862 Sucrose_synth: Sucros 20.6 61 0.0013 28.4 1.6 34 45-78 399-432 (550)
89 PF01012 ETF: Electron transfe 20.1 47 0.001 22.7 0.7 55 20-75 62-119 (164)
90 cd06268 PBP1_ABC_transporter_L 20.0 2.9E+02 0.0062 19.0 4.6 47 31-79 52-99 (298)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=99.95 E-value=8.8e-29 Score=183.46 Aligned_cols=81 Identities=36% Similarity=0.611 Sum_probs=75.8
Q ss_pred cccccc----cccCCeeEE-EccccccccchhHHHHhhhcCC--C---CCCcEEEeeccccccchHHHHHHhCCCEEeee
Q 047783 8 QKSHHS----ATVQTIILN-WTPISHRFSVSLSFRHKLFSEP--S---PSVRFLQGIKARGFIFGPPIAWAIGAKFVPMR 77 (90)
Q Consensus 8 ~~~~~~----~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~---~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vR 77 (90)
.|++|| ||++||+|+ |+|++. |..+|+..+|.|+++ . .++|+|||+|||||+||+++|.++|++||++|
T Consensus 11 ik~~ir~~pdFPk~GI~F~Di~pll~-dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiR 89 (183)
T KOG1712|consen 11 IKTAIRVVPDFPKKGIMFQDITPLLL-DPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAGFVPIR 89 (183)
T ss_pred HHHhheeCCCCCCCceehhhhhhhhc-CHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCCCeeecc
Confidence 477777 999999999 999985 999999999999988 3 67999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q 047783 78 KPKKLPGKSLHL 89 (90)
Q Consensus 78 K~GKLPg~~~s~ 89 (90)
|+|||||+++++
T Consensus 90 K~gKLPG~~i~~ 101 (183)
T KOG1712|consen 90 KPGKLPGEVISE 101 (183)
T ss_pred cCCCCCCceeEE
Confidence 999999999875
No 2
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.78 E-value=1.7e-19 Score=131.12 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=74.4
Q ss_pred eeccccccc----cccCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeee
Q 047783 5 KIDQKSHHS----ATVQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMR 77 (90)
Q Consensus 5 ~~~~~~~~~----~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vR 77 (90)
.+++|+.++ ||++|++|. .++.+. +...++..++.|+++ ..++|.|+|+|+|||+||+++|++||+|||++|
T Consensus 5 ~~~L~~~i~~~~~~~~~g~~f~d~~~~~~-~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 5 MELLKDSIREIPDFPKGGILFVDITLLLG-DPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHHHHhhcccccCCCceEEecchhhc-CcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 456788887 999999999 777764 888899999999988 457999999999999999999999999999999
Q ss_pred CCCCCCccccc
Q 047783 78 KPKKLPGKSLH 88 (90)
Q Consensus 78 K~GKLPg~~~s 88 (90)
|++|+|.++.+
T Consensus 84 K~~kl~~~~~~ 94 (179)
T COG0503 84 KKGKLPEESVV 94 (179)
T ss_pred ecCCCCCccee
Confidence 99999998864
No 3
>PLN02293 adenine phosphoribosyltransferase
Probab=99.70 E-value=9.3e-18 Score=123.05 Aligned_cols=81 Identities=42% Similarity=0.645 Sum_probs=73.5
Q ss_pred ccccccc----cccCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCC
Q 047783 7 DQKSHHS----ATVQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 7 ~~~~~~~----~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~ 79 (90)
++++++| ||++||.|+ +++++. +...++.+++.|++. ..++|+|+|+|++||++|+++|.++|+|++.+||.
T Consensus 16 ~l~~~i~~~~~~p~~gi~f~D~~~l~~-~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~ 94 (187)
T PLN02293 16 GISSAIRVVPDFPKPGIMFQDITTLLL-DPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPLRKP 94 (187)
T ss_pred HHHHhCccCCCCCcCCcEEEECHHHhh-CHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEEEec
Confidence 4667777 999999999 999975 888899999999887 55799999999999999999999999999999999
Q ss_pred CCCCccccc
Q 047783 80 KKLPGKSLH 88 (90)
Q Consensus 80 GKLPg~~~s 88 (90)
+|+|+++.+
T Consensus 95 ~k~~~~~~~ 103 (187)
T PLN02293 95 GKLPGEVIS 103 (187)
T ss_pred CCCCCceEE
Confidence 999998764
No 4
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.35 E-value=1.2e-12 Score=93.01 Aligned_cols=73 Identities=36% Similarity=0.707 Sum_probs=66.1
Q ss_pred cccCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCcccc
Q 047783 14 ATVQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGKSL 87 (90)
Q Consensus 14 ~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg~~~ 87 (90)
||.||+.|. ++..+. +...+..+++.+++. ..++|+|+|++.|||.+|..+|.++|+|++.+||.++.+.+..
T Consensus 11 ~~~~~~~~~d~~~~l~-~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~ 86 (169)
T TIGR01090 11 FPKKGILFRDITPLLN-NPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETI 86 (169)
T ss_pred CCCCCceeEeChhhhc-CHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCCCCCcee
Confidence 999999999 888876 888899999999887 4579999999999999999999999999999999998776543
No 5
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.29 E-value=4.7e-12 Score=93.21 Aligned_cols=65 Identities=20% Similarity=0.141 Sum_probs=53.6
Q ss_pred CeeEE--EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCC
Q 047783 18 TIILN--WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLP 83 (90)
Q Consensus 18 GI~F~--itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLP 83 (90)
||+|. +-+... |+..++.+.+.|++. ..++|+|+|+|+|||+||+++|.++|+||+.+||++|+|
T Consensus 18 ~~~~~~~~~~~~~-~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~k~~ 86 (189)
T PRK09219 18 NILKVDSFLNHQV-DPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLT 86 (189)
T ss_pred CEEEEhhhhcccc-CHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 55555 333323 566677888888877 558999999999999999999999999999999999997
No 6
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.19 E-value=3.4e-11 Score=88.68 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=49.4
Q ss_pred ccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCc
Q 047783 30 FSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84 (90)
Q Consensus 30 d~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg 84 (90)
|+..++.+.+.|++. ..++|+|+|+|+|||++|+++|+++|+||+++||++|+|+
T Consensus 31 ~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~ 87 (191)
T TIGR01744 31 DPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTL 87 (191)
T ss_pred CHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 556666888888877 4579999999999999999999999999999999999987
No 7
>PRK09213 pur operon repressor; Provisional
Probab=99.17 E-value=4.1e-11 Score=93.12 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=61.2
Q ss_pred cCCeeEEEccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCC-Cccccc
Q 047783 16 VQTIILNWTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKL-PGKSLH 88 (90)
Q Consensus 16 ~pGI~F~itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKL-Pg~~~s 88 (90)
.||--.++++++. ++..++.+.+.+++. +.++|+|+|+|++|+.+|+++|..+|+||+.+||.+|+ ||+++|
T Consensus 98 lpGgf~y~sdll~-~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs 172 (271)
T PRK09213 98 LPGGYLYLSDLLG-NPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVS 172 (271)
T ss_pred CCCCeEEeCcccC-CHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEE
Confidence 3554445677764 888888899999877 55799999999999999999999999999999999998 887765
No 8
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.15 E-value=5e-11 Score=92.63 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=60.4
Q ss_pred CCeeEEEccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCC-Cccccc
Q 047783 17 QTIILNWTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKL-PGKSLH 88 (90)
Q Consensus 17 pGI~F~itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKL-Pg~~~s 88 (90)
||=-+++++++ .|+..++.+.+.|++. +.++|+|+|+|++|+.+|+++|.+||+||+.+||.+|+ |+++++
T Consensus 97 pgg~~~~s~ll-~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs 170 (268)
T TIGR01743 97 PGGYLYLTDIL-GKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVS 170 (268)
T ss_pred cCCeEEechhh-cCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEE
Confidence 44334466666 4888888999999877 55899999999999999999999999999999999998 887765
No 9
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.07 E-value=1.9e-10 Score=82.11 Aligned_cols=72 Identities=33% Similarity=0.574 Sum_probs=63.7
Q ss_pred cccCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCccc
Q 047783 14 ATVQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGKS 86 (90)
Q Consensus 14 ~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg~~ 86 (90)
||.||+.|. +++++ .+...++.+.+.+++. ..++|+|+|++.+|+.+|..+|..+|+|++.+||..+.+...
T Consensus 16 ~~~~~~~~~d~~~l~-~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~ 90 (175)
T PRK02304 16 FPKPGILFRDITPLL-ADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRET 90 (175)
T ss_pred CCCCCcEEEeChhHh-cCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCce
Confidence 999998888 78776 4888888999999877 347999999999999999999999999999999998877654
No 10
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.03 E-value=3.2e-10 Score=83.42 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=58.5
Q ss_pred cCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCc
Q 047783 16 VQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84 (90)
Q Consensus 16 ~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg 84 (90)
+++..|. +.+.+. ++..++.+.+.|++. ..++|.|+|+|++|+.+|+++|.++|+|++.+||.+|=-+
T Consensus 40 ~~s~~yiD~~~~~~-~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g 110 (187)
T PRK13810 40 KKSKYYIDIKKAST-DPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYG 110 (187)
T ss_pred CcCCEEEECchhcC-CHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCccC
Confidence 4667787 877764 888888999999887 5589999999999999999999999999999999976443
No 11
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.87 E-value=2.1e-09 Score=78.63 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred ccccCCe--eEE-EccccccccchhHHHHhhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCC
Q 047783 13 SATVQTI--ILN-WTPISHRFSVSLSFRHKLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 13 ~~p~pGI--~F~-itP~l~rd~v~~~~~~~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~ 79 (90)
+||.||+ .|. ++|.+ + +..++.+++.|++. +.++|+|+|+|++|+.+|+++|..+++|++.+||.
T Consensus 15 ~~~~~~~~~~~~D~~~~l-~-P~~l~~~~~~l~~~~~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~ 83 (187)
T PRK12560 15 SGKALTTVNEFTDQLPAL-R-PKVLKETAKEIIKYIDKDIDKIVTEEDKGAPLATPVSLLSGKPLAMARWY 83 (187)
T ss_pred CCCCCCcceeEEeChhhc-C-HHHHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHHhhCCCEEEeccC
Confidence 4999999 798 99987 4 77888888888877 66899999999999999999999999999999874
No 12
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.81 E-value=6.1e-09 Score=77.73 Aligned_cols=66 Identities=18% Similarity=0.077 Sum_probs=58.3
Q ss_pred eEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCccc
Q 047783 20 ILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGKS 86 (90)
Q Consensus 20 ~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg~~ 86 (90)
.|. +++.+. ++..++.+++.|++. ..++|.|+|++.+|+.+|+++|.++|+|++.+||.+|.||+.
T Consensus 38 ~y~D~~~i~~-~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~ 106 (206)
T PRK13809 38 IYVDMRLVIS-SPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPS 106 (206)
T ss_pred EEEEChhhcc-CHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCc
Confidence 455 888764 788888899999876 447999999999999999999999999999999999999875
No 13
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.72 E-value=1.6e-08 Score=76.74 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=57.7
Q ss_pred ccccccccCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCC
Q 047783 9 KSHHSATVQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKL 82 (90)
Q Consensus 9 ~~~~~~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKL 82 (90)
++-+.+...| |- +++.+. |...++.+...+++. +.++|+|+++|.+|+.+|+++|.++|+||+.+||.++.
T Consensus 73 ~~ri~~~~~g--y~d~~~il~-~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~ 146 (238)
T PRK08558 73 KARIKVDDEG--YVDNSSVVF-DPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKET 146 (238)
T ss_pred HhhcccCCCC--EEEchhhhc-CHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCC
Confidence 5555666667 44 677765 777777778888776 45799999999999999999999999999999998664
No 14
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.45 E-value=2.2e-07 Score=77.23 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=53.5
Q ss_pred EccccccccchhHHHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCcc
Q 047783 23 WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGK 85 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg~ 85 (90)
+.+.+. ++..++.+++.+++. ..++|.|+|+|.+|+.+|+++|.++|+|++.+||.+|=.|+
T Consensus 319 ~~~lls-~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~ 382 (477)
T PRK05500 319 LRKIIS-NPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGT 382 (477)
T ss_pred Chhhhc-CHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccCC
Confidence 666654 777888888888877 55799999999999999999999999999999999886554
No 15
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.42 E-value=2.2e-07 Score=70.64 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=49.6
Q ss_pred EEccccccccchhH---HHHhhhcCC--CCCCcEEEeeccccccchHHHHHHhCCC-EEeeeCCCCCCc
Q 047783 22 NWTPISHRFSVSLS---FRHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAIGAK-FVPMRKPKKLPG 84 (90)
Q Consensus 22 ~itP~l~rd~v~~~---~~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~lg~g-fv~vRK~GKLPg 84 (90)
++++++. +...+. .+.+.|+++ ..++|+|+|+|++||.+|+++|.+||++ ++++||.+|++.
T Consensus 55 ~i~~ll~-~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~ 122 (233)
T PRK06031 55 ALASLIV-NQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWY 122 (233)
T ss_pred chhhHhC-ChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEcccccc
Confidence 3888875 655553 467777776 4479999999999999999999999986 789898887743
No 16
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.34 E-value=1.2e-06 Score=63.15 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=50.5
Q ss_pred EccccccccchhHHHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCcc
Q 047783 23 WTPISHRFSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGK 85 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg~ 85 (90)
+.+.+ .++..++.+.+.|++.. ++|+|+|+|++|+.+|..+|.++|+|++.+||..|-.+.
T Consensus 34 ~~~l~-~~p~~~~~l~~~l~~~~-~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~ 94 (170)
T PRK13811 34 IKTAI-THPALLKEIAAEVAKRY-DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGK 94 (170)
T ss_pred Cchhc-cCHHHHHHHHHHHHhhC-CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCCCC
Confidence 55544 46777778888876543 799999999999999999999999999999999776664
No 17
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.33 E-value=7.2e-07 Score=65.56 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=55.6
Q ss_pred ccCCeeEE-EccccccccchhHHHHhhhcCC----CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCC
Q 047783 15 TVQTIILN-WTPISHRFSVSLSFRHKLFSEP----SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 15 p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~----~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~ 79 (90)
|+|+..|. ++... .++..+..+++.|++. ..++|+|+|++.+|+.+|..+|.++|++++..|+.
T Consensus 49 ~~~~~~yid~~~~~-~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~ 117 (200)
T PRK02277 49 PAPKDIHIDWSSIG-SSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPK 117 (200)
T ss_pred CCCCCEEEEChhhc-cCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecc
Confidence 88999999 99886 4777777788888765 45899999999999999999999999999998865
No 18
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.24 E-value=1.4e-06 Score=63.50 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=52.0
Q ss_pred EccccccccchhHHHHhhhcCC--C--CCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCc
Q 047783 23 WTPISHRFSVSLSFRHKLFSEP--S--PSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~~l~~~--~--~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg 84 (90)
+++.+. +....+.+++.+++. . .++|+|+|+|.+|+.+|+.+|..+|+|++.+||..|-.+
T Consensus 37 ~~~i~~-~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g 101 (202)
T PRK00455 37 CRKLLS-YPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHG 101 (202)
T ss_pred Chhhhc-CHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCC
Confidence 666654 788888888888877 2 389999999999999999999999999999999766544
No 19
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.14 E-value=4.3e-06 Score=60.38 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=58.5
Q ss_pred eccccccc----cccCCeeEE-EccccccccchhHHHHhhhcCCC-CCCcEEEeeccccccchHHHHHHhCCCEEeeeCC
Q 047783 6 IDQKSHHS----ATVQTIILN-WTPISHRFSVSLSFRHKLFSEPS-PSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 6 ~~~~~~~~----~p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~~-~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~ 79 (90)
.|+|.--| ||.+|-.|- ....+. |...++.+.+.|++.. .++|+|+|++.+|+.+|..+|.++|+|++.+||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~~k~~~-dp~l~~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~ 84 (178)
T PRK07322 6 LTVGGVTRELPLIRVGPDLAIALFVILG-DTELTEAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLGKPYVVARKS 84 (178)
T ss_pred EEEcCEEeecCeeEeCCCCEEEEEhhhC-CHHHHHHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEe
Confidence 34444444 788866665 666653 6767777788877662 2799999999999999999999999999999987
Q ss_pred CC
Q 047783 80 KK 81 (90)
Q Consensus 80 GK 81 (90)
++
T Consensus 85 ~~ 86 (178)
T PRK07322 85 RK 86 (178)
T ss_pred CC
Confidence 65
No 20
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=98.04 E-value=5.6e-06 Score=60.17 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred cccchhHHHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCc
Q 047783 29 RFSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPG 84 (90)
Q Consensus 29 rd~v~~~~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg 84 (90)
.++..+..+.+.|++.-.+.|.|+|+|++|+.+|+.+|.++|+|++.+||..|=.|
T Consensus 40 ~~p~~~~~i~~~l~~~i~~~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg 95 (176)
T PRK13812 40 TDPDCLRLIAEAFADRIDEDTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYG 95 (176)
T ss_pred CCHHHHHHHHHHHHHHhccCCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 45556667888887773234999999999999999999999999999999876443
No 21
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=97.99 E-value=7.6e-06 Score=59.90 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=49.5
Q ss_pred EccccccccchhHHHHhhhcCC--C--CCCcEEEeeccccccchHHHHHHhCCCEEeeeCCC
Q 047783 23 WTPISHRFSVSLSFRHKLFSEP--S--PSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPK 80 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~~l~~~--~--~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~G 80 (90)
+++++. +...++.+++.|++. . .++|+|+|++.+||.+|+.+|.++++|++.+||.+
T Consensus 31 ~~~l~~-~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~ 91 (187)
T TIGR01367 31 SATLLE-HPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREG 91 (187)
T ss_pred chhhhc-CHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeC
Confidence 777764 788888888888766 2 37899999999999999999999999999999975
No 22
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=97.94 E-value=1.3e-05 Score=57.46 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=48.6
Q ss_pred EccccccccchhHHHHhhhcCC--C-CCCcEEEeeccccccchHHHHHHhCCC-----EEeeeCCCCCCcc
Q 047783 23 WTPISHRFSVSLSFRHKLFSEP--S-PSVRFLQGIKARGFIFGPPIAWAIGAK-----FVPMRKPKKLPGK 85 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~~l~~~--~-~~~d~IagiEaRGFi~ga~lA~~lg~g-----fv~vRK~GKLPg~ 85 (90)
+.+.+. +...++.+.+.+.+. . .++|+|+|++.+|+.+|.++|..+++| ++.+||..|-.+.
T Consensus 28 ~~~i~~-~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~ 97 (173)
T TIGR00336 28 IKLFNT-GPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGE 97 (173)
T ss_pred CeecCC-hHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCC
Confidence 555543 555556666666665 2 479999999999999999999999999 9999998765443
No 23
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.32 E-value=0.00022 Score=50.91 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=34.7
Q ss_pred chhHHHHhhhcCC---CCCCcEEEeeccccccchHHHHHHhCCCEE
Q 047783 32 VSLSFRHKLFSEP---SPSVRFLQGIKARGFIFGPPIAWAIGAKFV 74 (90)
Q Consensus 32 v~~~~~~~~l~~~---~~~~d~IagiEaRGFi~ga~lA~~lg~gfv 74 (90)
...+..+++|++. ..++|.|+|+..+||+||+.||.+||+|++
T Consensus 13 ~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 13 DQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCce
Confidence 4455566666655 226899999999999999999999999975
No 24
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=97.25 E-value=0.00023 Score=46.41 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=39.1
Q ss_pred chhHHHHhhhcCC----CCCCcEEEeeccccccchHHHHHHhCCCEEeeeCC
Q 047783 32 VSLSFRHKLFSEP----SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 32 v~~~~~~~~l~~~----~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~ 79 (90)
..+...++.+++. ..+.|.|+|++.+|+.+|..+|.+++.|.+..++.
T Consensus 8 ~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~ 59 (125)
T PF00156_consen 8 EQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKR 59 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeee
Confidence 3444555566555 66788899999999999999999999999998875
No 25
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.029 Score=42.93 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCCcEEEeeccccccchHHHHHHhCCCEEeee
Q 047783 44 PSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMR 77 (90)
Q Consensus 44 ~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vR 77 (90)
....+|.|+|++.-|..||+++|++||+-|..-+
T Consensus 83 ~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~ 116 (203)
T COG0856 83 VSFEVDVVVGIAISGVPLATMVAYELGKELAIYH 116 (203)
T ss_pred ccceeEEEEEEeecCccHHHHHHHHhCCceEEEe
Confidence 3778999999999999999999999999998776
No 26
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.04 E-value=0.044 Score=43.04 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=40.6
Q ss_pred HHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCCcc
Q 047783 36 FRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLPGK 85 (90)
Q Consensus 36 ~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLPg~ 85 (90)
...+.+.+++.+.++|+|++.+|+.++..+|..+|+|+..++|..+.++.
T Consensus 147 ~l~~~i~~~~~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~ 196 (309)
T PRK01259 147 ILLEDIKQKNLENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV 196 (309)
T ss_pred HHHHHHHhcCCCCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee
Confidence 34455555444567999999999999999999999999999998766554
No 27
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.045 Score=41.47 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=40.6
Q ss_pred ccchhHHHHhhhcCC--C-CCCcEEEeeccccccchHHHHHHh---CCCEEeeeCCCCCCc
Q 047783 30 FSVSLSFRHKLFSEP--S-PSVRFLQGIKARGFIFGPPIAWAI---GAKFVPMRKPKKLPG 84 (90)
Q Consensus 30 d~v~~~~~~~~l~~~--~-~~~d~IagiEaRGFi~ga~lA~~l---g~gfv~vRK~GKLPg 84 (90)
++...+.+.+.+++. . .++|+|+|++-.|..+|+++|.++ ++ ++.+||.-|==|
T Consensus 41 ~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~-~~~~Rke~K~hG 100 (201)
T COG0461 41 GPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPP-MAYVRKEAKDHG 100 (201)
T ss_pred CHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCc-EEEEeceeccCC
Confidence 333444555566555 3 479999999999999999999999 44 899999855433
No 28
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=94.19 E-value=0.084 Score=41.16 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=38.0
Q ss_pred HHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCC
Q 047783 36 FRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKL 82 (90)
Q Consensus 36 ~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKL 82 (90)
..++.+.+...+-++|+|++..|+.++..+|..+|+|+..++|..+.
T Consensus 148 ~l~~~i~~~~~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~ 194 (308)
T TIGR01251 148 VLAEYLKKKILDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRIS 194 (308)
T ss_pred HHHHHHHhhCCCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecC
Confidence 44555554433567999999999999999999999999999887653
No 29
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=91.81 E-value=0.27 Score=38.04 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=36.8
Q ss_pred HHHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCCCC
Q 047783 35 SFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKLP 83 (90)
Q Consensus 35 ~~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKLP 83 (90)
...++.+.+.. +-++|+|++..|+.++..+|.++|+|+..+||...-+
T Consensus 143 ~~la~~i~~~~-~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~ 190 (285)
T PRK00934 143 PLIAEYIGDKL-DDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISP 190 (285)
T ss_pred HHHHHHHHhcC-CCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCC
Confidence 34555553212 3358999999999999999999999999999875433
No 30
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=89.10 E-value=0.57 Score=34.30 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCcEEEeeccccccchHHHHHHhCC
Q 047783 47 SVRFLQGIKARGFIFGPPIAWAIGA 71 (90)
Q Consensus 47 ~~d~IagiEaRGFi~ga~lA~~lg~ 71 (90)
+.++|+|+..+|++||+.|+.+++.
T Consensus 35 ~~~vivgi~~Gg~~fa~~L~~~L~~ 59 (189)
T PLN02238 35 KSPVVLGVATGAFMFLADLVRAIQP 59 (189)
T ss_pred CCcEEEEEccCCHHHHHHHHHHhCc
Confidence 5699999999999999999999998
No 31
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=87.24 E-value=0.84 Score=32.94 Aligned_cols=41 Identities=5% Similarity=0.108 Sum_probs=30.9
Q ss_pred hhHHHHhhhcCC-----CCCCcEEEeeccccccchHHHHHHhCCCE
Q 047783 33 SLSFRHKLFSEP-----SPSVRFLQGIKARGFIFGPPIAWAIGAKF 73 (90)
Q Consensus 33 ~~~~~~~~l~~~-----~~~~d~IagiEaRGFi~ga~lA~~lg~gf 73 (90)
.+...+..+++. ..+-++|+|+...|+.+|..||.++|+++
T Consensus 21 ~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~ 66 (181)
T PRK09162 21 EVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPL 66 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCc
Confidence 334444444433 23457999999999999999999999986
No 32
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=86.61 E-value=0.69 Score=33.06 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=29.3
Q ss_pred chhHHHHhhhcCC----C-C-CCcEEEeeccccccchHHHHHHhC
Q 047783 32 VSLSFRHKLFSEP----S-P-SVRFLQGIKARGFIFGPPIAWAIG 70 (90)
Q Consensus 32 v~~~~~~~~l~~~----~-~-~~d~IagiEaRGFi~ga~lA~~lg 70 (90)
..++..++.+++. . . +.+.|+|+..|||.|++.||..++
T Consensus 10 ~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~ 54 (176)
T PRK05205 10 EALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLE 54 (176)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHH
Confidence 3444555555544 1 1 578999999999999999999994
No 33
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=84.66 E-value=1.2 Score=31.72 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=25.1
Q ss_pred CCcEEEeeccccccchHHHHHHhCCCE
Q 047783 47 SVRFLQGIKARGFIFGPPIAWAIGAKF 73 (90)
Q Consensus 47 ~~d~IagiEaRGFi~ga~lA~~lg~gf 73 (90)
+.++|+|+...|+.++..|+..++++.
T Consensus 26 ~~~vvv~i~~GG~~~a~~l~~~L~~~~ 52 (166)
T TIGR01203 26 KPLVLLCVLKGSFPFFADLIRYIAVPV 52 (166)
T ss_pred CCeEEEEEccCCHHHHHHHHHhcCCCc
Confidence 578999999999999999999999874
No 34
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=84.38 E-value=1.3 Score=37.39 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=41.4
Q ss_pred EccccccccchhHHH----HhhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEE--eeeCC
Q 047783 23 WTPISHRFSVSLSFR----HKLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFV--PMRKP 79 (90)
Q Consensus 23 itP~l~rd~v~~~~~----~~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv--~vRK~ 79 (90)
-.|++.-+++..-.+ -..|++. ..++|+|+++..-|+.+|..+|.++|+|+. ++|.+
T Consensus 283 arpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~ 346 (500)
T PRK07349 283 ARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNR 346 (500)
T ss_pred cCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEe
Confidence 467655566554333 3344444 447999999999999999999999999998 45544
No 35
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=84.31 E-value=1.4 Score=36.92 Aligned_cols=58 Identities=16% Similarity=-0.004 Sum_probs=43.4
Q ss_pred EccccccccchhHHHHhh----hcCC-CCCCcEEEeeccccccchHHHHHHhCCCEE--eeeCCC
Q 047783 23 WTPISHRFSVSLSFRHKL----FSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFV--PMRKPK 80 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~~----l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv--~vRK~G 80 (90)
..|.+.-+++..-++-.. |++. ..++|+|+++..-|+.++..+|.++|+|+. ++|++.
T Consensus 266 arPdS~~~g~~vy~~R~~~g~~La~~~~~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y 330 (479)
T PRK09123 266 ARPDSVVGGRSVYEVRKNIGRELARESPVDADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHY 330 (479)
T ss_pred cCCCceECCeEHHHHHHHHHHHHHHhCCCCCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEee
Confidence 667765566555444333 4444 448999999999999999999999999997 567643
No 36
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=83.84 E-value=2.1 Score=33.64 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeeeCCCC
Q 047783 36 FRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKK 81 (90)
Q Consensus 36 ~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GK 81 (90)
...+.+.+.. +-++|++++..|..++..+|..+|+|++.++|..+
T Consensus 150 ~la~~l~~~~-~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~ 194 (301)
T PRK07199 150 AIAAWIRAHV-PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRH 194 (301)
T ss_pred HHHHHHHhcC-CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEec
Confidence 3344443322 34689999999999999999999999999998643
No 37
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=82.14 E-value=2.5 Score=33.44 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=35.2
Q ss_pred HHHhhhcCCC--CCCcEEEeeccccccchHHHHHHhCCCEEeeeCCC
Q 047783 36 FRHKLFSEPS--PSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPK 80 (90)
Q Consensus 36 ~~~~~l~~~~--~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~G 80 (90)
...+.+.++. .+-.+|+|++..|..++..+|..+|+|+..++|..
T Consensus 152 ~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r 198 (320)
T PRK02269 152 LIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRR 198 (320)
T ss_pred HHHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCCCEEEEEecc
Confidence 3345554442 23358999999999999999999999999988854
No 38
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=81.94 E-value=3.1 Score=31.26 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCCCCcEEEeeccccccchHHHHHHhCC-CEE
Q 047783 44 PSPSVRFLQGIKARGFIFGPPIAWAIGA-KFV 74 (90)
Q Consensus 44 ~~~~~d~IagiEaRGFi~ga~lA~~lg~-gfv 74 (90)
..-++|+|+|+--.|++.|-.|+..||+ ++.
T Consensus 26 s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~ 57 (192)
T COG2236 26 SGFKPDVIVAIARGGLIPARILSDFLGVKPLY 57 (192)
T ss_pred cCCCCCEEEEEcCCceehHHHHHHHhCCCceE
Confidence 3568999999999999999999999998 443
No 39
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.49 E-value=2.5 Score=33.76 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=31.1
Q ss_pred cEEEeeccccccchHHHHHHhCCCEEeeeCCCCC
Q 047783 49 RFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKKL 82 (90)
Q Consensus 49 d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GKL 82 (90)
-+|+|+|.+|.-.+..+|..+|+|++.++|....
T Consensus 170 ~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~ 203 (332)
T PRK00553 170 LVVVSPDYGGVKRARLIAESLELPLAIIDKRRPK 203 (332)
T ss_pred eEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCC
Confidence 3899999999999999999999999999998543
No 40
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=74.65 E-value=3.4 Score=30.14 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=31.6
Q ss_pred cchhHHHHhhhcCC----C---CCCcEEEeeccccccchHHHHHHhCCCE
Q 047783 31 SVSLSFRHKLFSEP----S---PSVRFLQGIKARGFIFGPPIAWAIGAKF 73 (90)
Q Consensus 31 ~v~~~~~~~~l~~~----~---~~~d~IagiEaRGFi~ga~lA~~lg~gf 73 (90)
....+..++++++. . .+-.+++|+.-+|++|++-|+..++.|.
T Consensus 11 ~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~ 60 (178)
T PRK15423 11 EAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSH 60 (178)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCc
Confidence 34444555555443 1 2247999999999999999999999983
No 41
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=74.14 E-value=4.9 Score=33.00 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=31.2
Q ss_pred CCcEEEeeccccccchHHHHHHhCCCEEeeeCCC
Q 047783 47 SVRFLQGIKARGFIFGPPIAWAIGAKFVPMRKPK 80 (90)
Q Consensus 47 ~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~G 80 (90)
+-.+|+|++..|.-.+..+|..+|++++.++|..
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R 240 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRR 240 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEccc
Confidence 3568999999999999999999999999999974
No 42
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=70.37 E-value=7.9 Score=29.72 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCCCcEEEeecccc--ccchHHHHHHhCCCEEeeeCCCCCCc
Q 047783 45 SPSVRFLQGIKARG--FIFGPPIAWAIGAKFVPMRKPKKLPG 84 (90)
Q Consensus 45 ~~~~d~IagiEaRG--Fi~ga~lA~~lg~gfv~vRK~GKLPg 84 (90)
..++|++++=||.| +-==-..|.++|+|++++++|- +|.
T Consensus 188 ~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~-~~~ 228 (248)
T PRK08057 188 QHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA-LPY 228 (248)
T ss_pred HcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC-CCC
Confidence 34899999999988 3333467899999999999994 553
No 43
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=69.37 E-value=6 Score=29.00 Aligned_cols=55 Identities=11% Similarity=-0.063 Sum_probs=36.4
Q ss_pred eEE-Eccccc-cccchhHHHHhhhcCCCCCCcEEEeeccc----cccchHHHHHHhCCCEEe
Q 047783 20 ILN-WTPISH-RFSVSLSFRHKLFSEPSPSVRFLQGIKAR----GFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 20 ~F~-itP~l~-rd~v~~~~~~~~l~~~~~~~d~IagiEaR----GFi~ga~lA~~lg~gfv~ 75 (90)
++. -+|.+. .+.+.+..++.++.+. .++|+|+...+. |--+++-+|.+||.|++.
T Consensus 80 V~~~~~~~~~~~~~e~~a~al~~~i~~-~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 80 AILVSDRAFAGADTLATAKALAAAIKK-IGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred EEEEecccccCCChHHHHHHHHHHHHH-hCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 444 444432 2344554455555433 358999887666 889999999999999863
No 44
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.92 E-value=9.1 Score=30.08 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=29.3
Q ss_pred cEEEeeccccccchHHHHHHhC-CCEEeeeCCC
Q 047783 49 RFLQGIKARGFIFGPPIAWAIG-AKFVPMRKPK 80 (90)
Q Consensus 49 d~IagiEaRGFi~ga~lA~~lg-~gfv~vRK~G 80 (90)
-+|+|++..|+.++..+|..++ +++..++|..
T Consensus 150 ~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R 182 (304)
T PRK03092 150 VTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTR 182 (304)
T ss_pred cEEEEecCchHHHHHHHHHHcCCCCEEEEEEEc
Confidence 3899999999999999999999 9999998763
No 45
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=65.19 E-value=12 Score=28.87 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=30.7
Q ss_pred CCCCcEEEeecccc---ccchHHHHHHhCCCEEeeeCCCCCCcc
Q 047783 45 SPSVRFLQGIKARG---FIFGPPIAWAIGAKFVPMRKPKKLPGK 85 (90)
Q Consensus 45 ~~~~d~IagiEaRG---Fi~ga~lA~~lg~gfv~vRK~GKLPg~ 85 (90)
..++|++++=||.| |-==-..|.++|+|++++++|- +|.+
T Consensus 195 ~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~-~~~~ 237 (256)
T TIGR00715 195 EYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ-TIPG 237 (256)
T ss_pred HcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC-CCCC
Confidence 34899999999965 3222357899999999999994 6653
No 46
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=63.95 E-value=8.8 Score=31.85 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=35.4
Q ss_pred ccchhHHHHhhhcCC-CCCCcEEEeeccccc--cchHHHHHHhCCCEEee
Q 047783 30 FSVSLSFRHKLFSEP-SPSVRFLQGIKARGF--IFGPPIAWAIGAKFVPM 76 (90)
Q Consensus 30 d~v~~~~~~~~l~~~-~~~~d~IagiEaRGF--i~ga~lA~~lg~gfv~v 76 (90)
++.+..-+...+.+. ..++|.|.++|..|. +..-..|..+|+|+|=.
T Consensus 77 ~g~e~~ra~e~~~~~~~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~ 126 (357)
T COG3535 77 NGDEAIRAFEVLEDYLGKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDG 126 (357)
T ss_pred CcHHHHHHHHHHHHHhCCceeEEEEeecCCcchhHHHHHHHhcCCceecC
Confidence 445555556666666 778999999999996 55666788999998854
No 47
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.63 E-value=7.6 Score=30.86 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=28.5
Q ss_pred cEEEeeccccccchHHHHHHhCCCEEeeeCC
Q 047783 49 RFLQGIKARGFIFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 49 d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~ 79 (90)
-+|+|++..|.-++..+|..+|+|+..++|.
T Consensus 171 ~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~ 201 (323)
T PRK02458 171 VVVVSPKNSGIKRARSLAEYLDAPIAIIDYA 201 (323)
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEEe
Confidence 4899999999999999999999999987764
No 48
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.61 E-value=15 Score=29.14 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=31.9
Q ss_pred CcEEEeeccccccchHHHHHHhC-CCEEeeeCCCCCC
Q 047783 48 VRFLQGIKARGFIFGPPIAWAIG-AKFVPMRKPKKLP 83 (90)
Q Consensus 48 ~d~IagiEaRGFi~ga~lA~~lg-~gfv~vRK~GKLP 83 (90)
--+|++++..|.-++..+|.++| ++++.++|..+-.
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~ 203 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRA 203 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCC
Confidence 34899999999999999999998 8999999986543
No 49
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=63.27 E-value=7.3 Score=32.66 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=39.1
Q ss_pred EccccccccchhHHHH----hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEE
Q 047783 23 WTPISHRFSVSLSFRH----KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFV 74 (90)
Q Consensus 23 itP~l~rd~v~~~~~~----~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv 74 (90)
-.|++.-|++..-++= ..|++. ..++|+|+++..-|..+|-.+|.++|+|+.
T Consensus 254 arpds~~~g~~vy~~R~~~G~~La~~~~~~~D~vv~VP~s~~~~A~~~a~~~gip~~ 310 (471)
T PRK06781 254 ARPDSNIAGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYE 310 (471)
T ss_pred cCCCceeCCEEHHHHHHHHHHHHhhhCCCCCcEEEEcChhHHHHHHHHHHHhCCCcc
Confidence 5677655665543322 344555 458999999999999999999999999997
No 50
>PLN02440 amidophosphoribosyltransferase
Probab=56.31 E-value=12 Score=31.35 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=33.1
Q ss_pred hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEE--eeeCC
Q 047783 39 KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFV--PMRKP 79 (90)
Q Consensus 39 ~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv--~vRK~ 79 (90)
..|++. ..++|+|+++-.-|+.+|..+|.++|+|+. ++|.+
T Consensus 266 ~~La~~~~~~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~r 309 (479)
T PLN02440 266 EILATEIPVDCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSH 309 (479)
T ss_pred HHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEe
Confidence 455555 347999999999999999999999999986 45544
No 51
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=56.03 E-value=16 Score=30.25 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=39.8
Q ss_pred EccccccccchhHHHH----hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCE--EeeeCC
Q 047783 23 WTPISHRFSVSLSFRH----KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKF--VPMRKP 79 (90)
Q Consensus 23 itP~l~rd~v~~~~~~----~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gf--v~vRK~ 79 (90)
-.|++.-+++..-..- ..|++. ..+.|.|+++---|+..|-.+|.++|+|+ ..+||.
T Consensus 246 ~rpds~~~g~~v~~~R~~~G~~La~~~~~~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~ 309 (445)
T PRK08525 246 ARPDSIVFGKNVYEVRKKMGEELAKKFPIKADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNH 309 (445)
T ss_pred cCCCceECCEEHHHHHHHHHHHHHHHhcccCCeEEECCchHHHHHHHHHHHhCCCccceEEEee
Confidence 4566544554433332 333434 34788899988889999999999999998 677776
No 52
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=55.58 E-value=9.5 Score=32.43 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=39.5
Q ss_pred EccccccccchhHHHHh----hhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEEe
Q 047783 23 WTPISHRFSVSLSFRHK----LFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 23 itP~l~rd~v~~~~~~~----~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~ 75 (90)
-.|++.-+++..-.+=. .|++. ..++|+|+++..+|+..|..+|.++|+|+..
T Consensus 273 arpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG~~~A~g~a~~~gip~~~ 330 (510)
T PRK07847 273 ARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESGTPAAVGYAQESGIPFGQ 330 (510)
T ss_pred cCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCchHHHHHHHHHHhCCChhh
Confidence 56766556655443332 34444 4578999999999999999999999999965
No 53
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=55.50 E-value=17 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=37.7
Q ss_pred EccccccccchhH----HHHhhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEEe
Q 047783 23 WTPISHRFSVSLS----FRHKLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 23 itP~l~rd~v~~~----~~~~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~ 75 (90)
-.|++.-+++..- .+-..|++. ..+.|.|+++..-|..+|..+|.++|+|+..
T Consensus 259 arpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~vPdsg~~~A~~~A~~lgip~~~ 316 (469)
T PRK05793 259 ARPDSVIDGISVYESRVRAGRQLYKEYPVDADIVIGVPDSGIPAAIGYAEASGIPYGI 316 (469)
T ss_pred ccCCcccCCeEhhHHHHHHHHHHHHhcCCCCCEEEEcCccHHHHHHHHHHHhCCCEee
Confidence 5566443443322 233445555 4478999999999999999999999999964
No 54
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=52.73 E-value=6.9 Score=24.75 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=27.5
Q ss_pred CCcEEEeeccccc---cchHHHHHHhCCCEEeeeCCCCCCccccc
Q 047783 47 SVRFLQGIKARGF---IFGPPIAWAIGAKFVPMRKPKKLPGKSLH 88 (90)
Q Consensus 47 ~~d~IagiEaRGF---i~ga~lA~~lg~gfv~vRK~GKLPg~~~s 88 (90)
+.+.++=+....| +-++++|.+.+.|++++. +.||.++..
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~--~~l~~~~~~ 66 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAAKNNAPILLVN--NSLPSSVKA 66 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC--CCCCHHHHH
Confidence 4444444433333 457889999999999999 888866543
No 55
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=50.33 E-value=33 Score=27.42 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=34.2
Q ss_pred HHHhhhcCCCCCCcEEEeeccccccchHHHHHHhC-CCEEeeeCCCC
Q 047783 36 FRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIG-AKFVPMRKPKK 81 (90)
Q Consensus 36 ~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg-~gfv~vRK~GK 81 (90)
...+.+.+.+.+=.+|+|++.+|.-.+..+|..++ +++..++|..+
T Consensus 168 ~l~~~i~~~~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~ 214 (330)
T PRK02812 168 VLLDYLASKNLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQ 214 (330)
T ss_pred HHHHHHHhcCCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeecc
Confidence 33444433322234899999999999999999994 89999988753
No 56
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=49.01 E-value=24 Score=26.63 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=30.7
Q ss_pred ccchhHHHHhhhcCC----C-------CCCcEEEeeccccccchHHHHHHhC
Q 047783 30 FSVSLSFRHKLFSEP----S-------PSVRFLQGIKARGFIFGPPIAWAIG 70 (90)
Q Consensus 30 d~v~~~~~~~~l~~~----~-------~~~d~IagiEaRGFi~ga~lA~~lg 70 (90)
+....+..+++|++. . .+.++|+|+=-+||+|++-|+.+++
T Consensus 29 s~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~ 80 (211)
T PTZ00271 29 TQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLA 80 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhc
Confidence 444455556666544 2 2478999999999999999999996
No 57
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=46.56 E-value=50 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=37.4
Q ss_pred chhHHHHhhhcCCC-CCCcEEEeeccccccchHHHHHHhCCCE--EeeeCCC
Q 047783 32 VSLSFRHKLFSEPS-PSVRFLQGIKARGFIFGPPIAWAIGAKF--VPMRKPK 80 (90)
Q Consensus 32 v~~~~~~~~l~~~~-~~~d~IagiEaRGFi~ga~lA~~lg~gf--v~vRK~G 80 (90)
++.+-+++.|+... .+--.|.|+--.|...|-.+|..||.|+ +.+||=|
T Consensus 9 dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG 60 (220)
T COG1926 9 DAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIG 60 (220)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecC
Confidence 34455666776664 3445888999999999999999999997 5677765
No 58
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=46.31 E-value=20 Score=29.57 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=37.5
Q ss_pred EccccccccchhHH----HHhhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEEe
Q 047783 23 WTPISHRFSVSLSF----RHKLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 23 itP~l~rd~v~~~~----~~~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~ 75 (90)
-.|++.-++...-. .-..|++. ..++|.|+++-.-|+..|..+|.++|+|+..
T Consensus 244 arpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~sg~~~A~~la~~lgip~~~ 301 (442)
T TIGR01134 244 ARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSGRSAALGFAQASGIPYRE 301 (442)
T ss_pred cCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCCHHHHHHHHHHHhCCCchH
Confidence 45554334443322 22445554 4489999999999999999999999999963
No 59
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=43.34 E-value=27 Score=27.41 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=28.9
Q ss_pred EEEeeccccccchHHHHHHh-CCCEEeeeCCC
Q 047783 50 FLQGIKARGFIFGPPIAWAI-GAKFVPMRKPK 80 (90)
Q Consensus 50 ~IagiEaRGFi~ga~lA~~l-g~gfv~vRK~G 80 (90)
+|+|++..|.-++..+|..+ ++++..++|..
T Consensus 154 vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R 185 (302)
T PLN02369 154 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRR 185 (302)
T ss_pred EEEEECcChHHHHHHHHHHcCCCCEEEEEEec
Confidence 89999999999999999999 79999999875
No 60
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=41.86 E-value=62 Score=20.17 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=31.6
Q ss_pred ccCCeeEE--EccccccccchhHHHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeee
Q 047783 15 TVQTIILN--WTPISHRFSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMR 77 (90)
Q Consensus 15 p~pGI~F~--itP~l~rd~v~~~~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vR 77 (90)
+.+-|+.. ++|.... .. ..++--|+.-+-.=.-.++.+|.++|+|.+.--
T Consensus 9 ~~~~IlV~~~~~p~~~~--~~-----------~~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLA--LD-----------LQRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSTEEEEESS--TTCHH--SH-----------HTTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred CCCEEEEECCCCHHHHh--cc-----------hhheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 44458888 8888541 11 224556666666666788999999999998643
No 61
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=40.15 E-value=16 Score=29.43 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=29.6
Q ss_pred chhHHHHhhhcCC-CCCCcEEEeeccccc--cchHHHHHHhCCCEEee
Q 047783 32 VSLSFRHKLFSEP-SPSVRFLQGIKARGF--IFGPPIAWAIGAKFVPM 76 (90)
Q Consensus 32 v~~~~~~~~l~~~-~~~~d~IagiEaRGF--i~ga~lA~~lg~gfv~v 76 (90)
.++..+.+.+.+. ..++|.|.++|..|. +.+-..|.++|+|+|=.
T Consensus 75 ~e~~~a~~~le~~~g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 75 DEALRAVEALEKYLGRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred hHHHHHHHHHHHhhCCCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 4555666666666 668999999999985 44555677899998743
No 62
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=39.28 E-value=56 Score=27.24 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=39.2
Q ss_pred EccccccccchhHHHH----hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEE--eeeCC
Q 047783 23 WTPISHRFSVSLSFRH----KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFV--PMRKP 79 (90)
Q Consensus 23 itP~l~rd~v~~~~~~----~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv--~vRK~ 79 (90)
-.|++.-+++....+- ..|++. ..++|.|+++---|..+|-.+|.++|+|+. ++|.+
T Consensus 242 arpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r 305 (442)
T PRK08341 242 ARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNR 305 (442)
T ss_pred cCCccccCCcCHHHHHHHHHHHhhcccCCCCceEEEecCchHHHHHHHHHHhCCCchheEEEec
Confidence 4566544555432222 233444 457899999999999999999999999997 44544
No 63
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.10 E-value=51 Score=26.21 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=27.4
Q ss_pred CCCcEEEeeccccc---cchHHHHHHhCCCEEeeeCC
Q 047783 46 PSVRFLQGIKARGF---IFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 46 ~~~d~IagiEaRGF---i~ga~lA~~lg~gfv~vRK~ 79 (90)
.++|+|+.=+|.|- -==..-|.+||+|++++.++
T Consensus 195 ~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 195 YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 47999999888762 22236789999999999999
No 64
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=38.76 E-value=26 Score=29.54 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=38.6
Q ss_pred EccccccccchhHHHH----hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEEe
Q 047783 23 WTPISHRFSVSLSFRH----KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 23 itP~l~rd~v~~~~~~----~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~ 75 (90)
-.|++.-++...-.+= ..|++. ..++|+|+++..-|..+|-.+|.++|+|+..
T Consensus 254 arpdS~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~~~~A~gla~~~gip~~~ 311 (475)
T PRK07631 254 ARPDSNVDGINVHTARKNLGKRLALEAPVEADVVTGVPDSSISAAIGYAEATGIPYEL 311 (475)
T ss_pred ecCCcccCCeEHHHHHHHHHHHHHhhCCCCCcEEEEechhHHHHHHHHHHHHCCCccc
Confidence 5666554555443322 334544 4479999999999999999999999999973
No 65
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=38.70 E-value=42 Score=26.00 Aligned_cols=30 Identities=3% Similarity=-0.045 Sum_probs=25.0
Q ss_pred CCCcEEEe----eccccccchHHHHHHhCCCEEe
Q 047783 46 PSVRFLQG----IKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 46 ~~~d~Iag----iEaRGFi~ga~lA~~lg~gfv~ 75 (90)
.++|.|+| .|.-.=..|+.+|..||.|++.
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 36999998 6666678999999999999764
No 66
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=37.46 E-value=52 Score=22.88 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=30.7
Q ss_pred cchhHHHHhhhcCCCCCCcEEEee-ccccccchHHHHHHhCCCEEe
Q 047783 31 SVSLSFRHKLFSEPSPSVRFLQGI-KARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 31 ~v~~~~~~~~l~~~~~~~d~Iagi-EaRGFi~ga~lA~~lg~gfv~ 75 (90)
...+..++..+++. .++|+|++. .++|=-+++-||.+||.|++.
T Consensus 68 ~~~~a~al~~~i~~-~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 68 AEPYAPALVALAKK-EKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred hHHHHHHHHHHHHh-cCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 44444444444433 357887764 568889999999999999874
No 67
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.90 E-value=59 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCCCcEEEeeccccccchH----HHHHHhCCCEEeeeCCC
Q 047783 45 SPSVRFLQGIKARGFIFGP----PIAWAIGAKFVPMRKPK 80 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga----~lA~~lg~gfv~vRK~G 80 (90)
..++|++++=||.|- |. ..|.++|+|++++++|-
T Consensus 192 ~~~i~~lVtK~SG~~--g~~eKi~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 192 QYGIDVLVTKESGGS--GFDEKIEAARELGIPVIVIKRPP 229 (249)
T ss_pred HcCCCEEEEcCCCch--hhHHHHHHHHHcCCeEEEEeCCC
Confidence 348999999999886 43 46899999999999984
No 68
>PRK12342 hypothetical protein; Provisional
Probab=34.91 E-value=50 Score=25.59 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=24.2
Q ss_pred CCcEEEe----eccccccchHHHHHHhCCCEEe
Q 047783 47 SVRFLQG----IKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 47 ~~d~Iag----iEaRGFi~ga~lA~~lg~gfv~ 75 (90)
++|.|.| .|.-.=..|+.+|..||.|++.
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 5999987 5665667899999999999875
No 69
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=32.27 E-value=62 Score=24.03 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=23.8
Q ss_pred CCCcEEEeeccccccc-hHHHHHHhCCCEEee
Q 047783 46 PSVRFLQGIKARGFIF-GPPIAWAIGAKFVPM 76 (90)
Q Consensus 46 ~~~d~IagiEaRGFi~-ga~lA~~lg~gfv~v 76 (90)
.++|+|.+...+...+ |+..|..+|+|++.+
T Consensus 87 ~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 87 EKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 3899999997776655 455667789999865
No 70
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=32.11 E-value=64 Score=20.61 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=25.0
Q ss_pred CCCCcEEEeecccc-ccchHHHHHHhC-CCEEe
Q 047783 45 SPSVRFLQGIKARG-FIFGPPIAWAIG-AKFVP 75 (90)
Q Consensus 45 ~~~~d~IagiEaRG-Fi~ga~lA~~lg-~gfv~ 75 (90)
..++|+|-+-...+ .++|...+..++ ++++.
T Consensus 72 ~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 72 KEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred cCCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 45799999999887 577777778888 88874
No 71
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=31.97 E-value=51 Score=21.76 Aligned_cols=40 Identities=13% Similarity=-0.030 Sum_probs=29.0
Q ss_pred ccCCeeEE-EccccccccchhHHHHhhhcCC--CCCCcEEEeec
Q 047783 15 TVQTIILN-WTPISHRFSVSLSFRHKLFSEP--SPSVRFLQGIK 55 (90)
Q Consensus 15 p~pGI~F~-itP~l~rd~v~~~~~~~~l~~~--~~~~d~IagiE 55 (90)
.-||+..+ +.=.+. -++...++.++|.++ ..+.|.|+|+.
T Consensus 8 ~i~G~ei~yl~iv~~-~~~d~d~Al~eM~e~A~~lGAnAVVGvr 50 (74)
T TIGR03884 8 EIPGLQLYYLGIVST-ESDNVDEIVENLREKVKAKGGMGLIAFR 50 (74)
T ss_pred cCCCeEEEEEEEEEE-ecCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 45787766 544443 456777889999888 66899999974
No 72
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.80 E-value=1.5e+02 Score=21.47 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=37.8
Q ss_pred CeeEE--EccccccccchhHHHHhhhcCCCCCCcEEEeeccccccchHHHHHHhCCCEEeee
Q 047783 18 TIILN--WTPISHRFSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMR 77 (90)
Q Consensus 18 GI~F~--itP~l~rd~v~~~~~~~~l~~~~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vR 77 (90)
||.|. +... +|....+...++.+.. .++|+++++--+-=-++..+|.....|++-+=
T Consensus 27 gi~~~~~V~sa-HR~p~~l~~~~~~~~~--~~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP 85 (150)
T PF00731_consen 27 GIPYEVRVASA-HRTPERLLEFVKEYEA--RGADVIIAVAGMSAALPGVVASLTTLPVIGVP 85 (150)
T ss_dssp T-EEEEEE--T-TTSHHHHHHHHHHTTT--TTESEEEEEEESS--HHHHHHHHSSS-EEEEE
T ss_pred CCCEEEEEEec-cCCHHHHHHHHHHhcc--CCCEEEEEECCCcccchhhheeccCCCEEEee
Confidence 56777 3333 6766666555555543 46789998888888889999999999998773
No 73
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=30.79 E-value=41 Score=27.30 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=31.1
Q ss_pred cEEEeeccccccchHHHHHHhCCCEEeeeCCCC
Q 047783 49 RFLQGIKARGFIFGPPIAWAIGAKFVPMRKPKK 81 (90)
Q Consensus 49 d~IagiEaRGFi~ga~lA~~lg~gfv~vRK~GK 81 (90)
.+|+++|..|.--+-.+|..||.++..+.|+.-
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~ 197 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAPLAIIDKRRD 197 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCCEEEEEEeec
Confidence 699999999999999999999999999999874
No 74
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=30.48 E-value=56 Score=22.82 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=30.2
Q ss_pred cchhHHHHhhhcCCCCCCcEEEe-eccccccchHHHHHHhCCCEEe
Q 047783 31 SVSLSFRHKLFSEPSPSVRFLQG-IKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 31 ~v~~~~~~~~l~~~~~~~d~Iag-iEaRGFi~ga~lA~~lg~gfv~ 75 (90)
...+..++..+++. .++|+|++ -.++|=-+++-||.+||.|++.
T Consensus 76 ~~~~a~~l~~~i~~-~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 76 PEATAKALAALIKK-EKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred hHHHHHHHHHHHHH-hCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 33343444444333 35787765 5678999999999999999864
No 75
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=29.71 E-value=49 Score=28.00 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.5
Q ss_pred hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEE
Q 047783 39 KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFV 74 (90)
Q Consensus 39 ~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv 74 (90)
+.|++. ..++|+|+++---|..+|-.+|.++|+|+.
T Consensus 276 ~~La~~~~~~~D~VvpVPnqa~~lA~~la~~lgip~~ 312 (484)
T PRK07272 276 KRLAQEFPHDADIVIGVPNSSLSAASGYAEESGLPYE 312 (484)
T ss_pred HHHHhhcCCCCCEEEEecHHHHHHHHHHHHHHCCCcc
Confidence 344443 335899999999999999999999999984
No 76
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=29.40 E-value=45 Score=22.81 Aligned_cols=26 Identities=12% Similarity=0.450 Sum_probs=21.6
Q ss_pred CCcEEEeeccccccchHHHHHHhCCCEEee
Q 047783 47 SVRFLQGIKARGFIFGPPIAWAIGAKFVPM 76 (90)
Q Consensus 47 ~~d~IagiEaRGFi~ga~lA~~lg~gfv~v 76 (90)
+.|.++|.- +.|+.+|+.+|+|++.+
T Consensus 257 ~~~~~Is~R----lH~~I~a~~~g~P~i~i 282 (286)
T PF04230_consen 257 QADLVISMR----LHGAILALSLGVPVIAI 282 (286)
T ss_pred cCCEEEecC----CHHHHHHHHcCCCEEEE
Confidence 678888764 56799999999999986
No 77
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=28.71 E-value=76 Score=24.05 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=25.1
Q ss_pred CCCCcEEEeeccccccc-hHHHHHHhCCCEEee
Q 047783 45 SPSVRFLQGIKARGFIF-GPPIAWAIGAKFVPM 76 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~-ga~lA~~lg~gfv~v 76 (90)
..++|+|.+-..|.-.+ |+..|..+|+|++.+
T Consensus 84 ~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 84 EEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 44789999997776655 566778899999876
No 78
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=28.47 E-value=56 Score=27.53 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=37.4
Q ss_pred EccccccccchhHHHH----hhhcCC-CCCCcEEEeeccccccchHHHHHHhCCCEEe
Q 047783 23 WTPISHRFSVSLSFRH----KLFSEP-SPSVRFLQGIKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 23 itP~l~rd~v~~~~~~----~~l~~~-~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~ 75 (90)
-.|.+.-++...-.+= ..|++. ..+.|+|+.+...|+-.+..+|.++|+|+..
T Consensus 262 arpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~~~~A~g~a~~~gip~~~ 319 (474)
T PRK06388 262 SRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSGRSQAIGFSMASGIPYTE 319 (474)
T ss_pred cCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCcHHHHHHHHHHhCCCchh
Confidence 5566533554433322 334444 4578999999999999999999999999954
No 79
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=26.09 E-value=46 Score=26.84 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.0
Q ss_pred ccchHHHHHHhCCCEEeeeCCC
Q 047783 59 FIFGPPIAWAIGAKFVPMRKPK 80 (90)
Q Consensus 59 Fi~ga~lA~~lg~gfv~vRK~G 80 (90)
.++|+.+..-+|+++|++|.+.
T Consensus 320 lil~~llG~~lg~~~vL~r~~~ 341 (342)
T PRK11638 320 MIMWGAVGALVGAGVALTRRRR 341 (342)
T ss_pred HHHHHHHHHHHHheeeEeecCC
Confidence 4588999999999999999864
No 80
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.83 E-value=80 Score=24.92 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCCcEEEeeccccccchHH-HHHHhCCCEEee
Q 047783 45 SPSVRFLQGIKARGFIFGPP-IAWAIGAKFVPM 76 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga~-lA~~lg~gfv~v 76 (90)
..++|+|+|++..||-+..+ -|..+|+|++..
T Consensus 87 ~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 87 QAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred hcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 45899999999999875432 446789998864
No 81
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=25.75 E-value=63 Score=24.30 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=24.3
Q ss_pred EEEeeccccccchHHHHHHhCCCEEeeeCCC
Q 047783 50 FLQGIKARGFIFGPPIAWAIGAKFVPMRKPK 80 (90)
Q Consensus 50 ~IagiEaRGFi~ga~lA~~lg~gfv~vRK~G 80 (90)
+||+.++.|-==|.++|.+|+++|.++.+.-
T Consensus 6 VIVa~~~g~akRAts~Ad~L~l~~avih~e~ 36 (184)
T PF14572_consen 6 VIVAKDPGGAKRATSFADRLRLGFAVIHGER 36 (184)
T ss_dssp EEEESSGGGHHHHHHHHHHCT-EEEEE----
T ss_pred EEEeCCCCchHhHHHHHHHhCCCeeEecCcc
Confidence 6889999998889999999999999998764
No 82
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.22 E-value=1.1e+02 Score=23.03 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=23.6
Q ss_pred CCCCcEEEeeccccccchHH-HHHHhCCCEEeee
Q 047783 45 SPSVRFLQGIKARGFIFGPP-IAWAIGAKFVPMR 77 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga~-lA~~lg~gfv~vR 77 (90)
..++|+|++.++.+|....+ .|...|+|++...
T Consensus 83 ~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 83 AEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred HcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 45799999999877654323 3456799988753
No 83
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=25.00 E-value=97 Score=23.81 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=23.1
Q ss_pred CCCCcEEEeeccccccchHHHHHHhCCCEEee
Q 047783 45 SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPM 76 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~v 76 (90)
..++|.|++ +. .+..|..+|..+|+|+|.+
T Consensus 90 ~~~pDlVi~-d~-~~~~~~~~A~~~giP~v~~ 119 (392)
T TIGR01426 90 GDRPDLIVY-DI-ASWTGRLLARKWDVPVISS 119 (392)
T ss_pred CCCCCEEEE-CC-ccHHHHHHHHHhCCCEEEE
Confidence 347899966 33 4557888999999999977
No 84
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.94 E-value=79 Score=26.42 Aligned_cols=33 Identities=9% Similarity=-0.048 Sum_probs=24.9
Q ss_pred HHhhhcCC--CCCCcEEEeeccccccchHHHHHHh
Q 047783 37 RHKLFSEP--SPSVRFLQGIKARGFIFGPPIAWAI 69 (90)
Q Consensus 37 ~~~~l~~~--~~~~d~IagiEaRGFi~ga~lA~~l 69 (90)
+..++++. ..++|.+++|||-||=+.-+-..+-
T Consensus 73 ~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk 107 (381)
T COG0763 73 IRRELVRYILANKPDVLILIDSPDFNLRVAKKLRK 107 (381)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHH
Confidence 34444554 6789999999999999988776543
No 85
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.22 E-value=23 Score=31.89 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=10.4
Q ss_pred eeccccccccccC
Q 047783 5 KIDQKSHHSATVQ 17 (90)
Q Consensus 5 ~~~~~~~~~~p~p 17 (90)
-=|||+|+|||+-
T Consensus 640 p~~L~~HiRYP~d 652 (774)
T PF03699_consen 640 PEDLRSHIRYPED 652 (774)
T ss_pred CHHHHhhcCCcHH
Confidence 3489999999973
No 86
>PLN00142 sucrose synthase
Probab=22.54 E-value=1.1e+02 Score=27.87 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=29.6
Q ss_pred CCCCcEEEeeccccccchHHHHHHhCCCEEeee
Q 047783 45 SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMR 77 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vR 77 (90)
...+|+|-|=-+-|=+.|..+|.++|+|+|-.=
T Consensus 406 ~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 406 QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 457999999999999999999999999999653
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=21.88 E-value=1.2e+02 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCCCcEEEeeccccccchHHHHHHhCCCEEee
Q 047783 45 SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPM 76 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~v 76 (90)
..++|+|.|=-+-|=+.|..+|.++|+|++.+
T Consensus 383 ~~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 383 QGKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred CCCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999999998854
No 88
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=20.61 E-value=61 Score=28.44 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCCCcEEEeeccccccchHHHHHHhCCCEEeeeC
Q 047783 45 SPSVRFLQGIKARGFIFGPPIAWAIGAKFVPMRK 78 (90)
Q Consensus 45 ~~~~d~IagiEaRGFi~ga~lA~~lg~gfv~vRK 78 (90)
...+|.|.|==|=|=+.|+.||.++|+++..+=-
T Consensus 399 ~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 399 QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred CCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 5689999999999999999999999999987643
No 89
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.07 E-value=47 Score=22.74 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=31.5
Q ss_pred eEE-Eccccc-cccchhHHHHhhhcCCCCCCcEEEe-eccccccchHHHHHHhCCCEEe
Q 047783 20 ILN-WTPISH-RFSVSLSFRHKLFSEPSPSVRFLQG-IKARGFIFGPPIAWAIGAKFVP 75 (90)
Q Consensus 20 ~F~-itP~l~-rd~v~~~~~~~~l~~~~~~~d~Iag-iEaRGFi~ga~lA~~lg~gfv~ 75 (90)
.+. -+|.+. .+...+..++.++++. .++|+|+. -.+.|-=+++.||.+||.|++.
T Consensus 62 v~~~~~~~~~~~~~~~~a~~l~~~~~~-~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 62 VYHIDDPALAEYDPEAYADALAELIKE-EGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp EEEEE-GGGTTC-HHHHHHHHHHHHHH-HT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred EEEecCccccccCHHHHHHHHHHHHHh-cCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 444 455542 1333444444444433 45676665 5567777999999999999874
No 90
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=20.01 E-value=2.9e+02 Score=18.99 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=29.6
Q ss_pred cchhHHHHhhhcCCCCCCcEEEeeccccc-cchHHHHHHhCCCEEeeeCC
Q 047783 31 SVSLSFRHKLFSEPSPSVRFLQGIKARGF-IFGPPIAWAIGAKFVPMRKP 79 (90)
Q Consensus 31 ~v~~~~~~~~l~~~~~~~d~IagiEaRGF-i~ga~lA~~lg~gfv~vRK~ 79 (90)
......+++.+.+. ++|.|+|.-+..- .-....+.+.++|++...-.
T Consensus 52 ~~~~~~~~~~l~~~--~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~ 99 (298)
T cd06268 52 PEAAAAAARELVDD--GVDAVIGPLSSGVALAAAPVAEEAGVPLISPGAT 99 (298)
T ss_pred HHHHHHHHHHHHhC--CceEEEcCCcchhHHhhHHHHHhCCCcEEccCCC
Confidence 33444555666643 7999998654432 23456778889999876443
Done!