Query 047785
Match_columns 174
No_of_seqs 82 out of 84
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 04:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 92.4 0.18 6.3E-06 37.9 4.9 70 32-129 25-95 (324)
2 3nrw_A Phage integrase/site-sp 88.8 1.4 4.6E-05 30.0 6.2 68 34-128 33-102 (117)
3 1a0p_A Site-specific recombina 85.4 2 6.9E-05 31.7 6.0 69 32-128 26-96 (290)
4 2khq_A Integrase; all-alpha, s 80.1 3.1 0.00011 26.8 4.7 63 35-128 30-94 (110)
5 2kkp_A Phage integrase; SAM-li 79.5 4.7 0.00016 26.1 5.4 54 49-128 46-101 (117)
6 2ols_A Phosphoenolpyruvate syn 77.4 2.1 7.3E-05 40.3 4.4 39 108-146 561-629 (794)
7 2oxo_A Integrase; DNA-binding 77.3 5.3 0.00018 24.5 4.9 63 35-128 29-93 (103)
8 2eqe_A Tumor necrosis factor, 73.6 1.5 5.2E-05 29.5 1.7 26 69-94 11-36 (48)
9 2x0s_A Pyruvate phosphate diki 73.4 4 0.00014 39.3 5.1 24 123-146 683-709 (913)
10 2key_A Putative phage integras 73.0 2 6.9E-05 28.0 2.2 51 51-128 47-101 (112)
11 2kkv_A Integrase; protein stru 72.1 18 0.00063 23.8 7.0 62 40-128 35-98 (121)
12 1z19_A Integrase; protein-DNA 71.9 7 0.00024 28.8 5.2 64 34-128 28-93 (283)
13 2kiw_A INT protein; alpha, str 70.3 15 0.00051 23.6 6.0 58 39-128 32-91 (111)
14 2zxj_A Transcriptional regulat 67.5 2.6 9E-05 30.8 2.0 21 103-123 76-96 (120)
15 2kd1_A DNA integration/recombi 65.9 9.7 0.00033 24.8 4.4 52 51-128 46-99 (118)
16 2xz9_A Phosphoenolpyruvate-pro 64.1 12 0.00041 31.6 5.7 34 105-138 62-117 (324)
17 3zq7_A KDP operon transcriptio 63.2 3.9 0.00013 27.7 2.1 21 102-122 67-87 (102)
18 2kj8_A Putative prophage CPS-5 60.9 20 0.00068 23.7 5.3 58 40-128 38-97 (118)
19 2z9m_A Response regulator YYCF 60.8 4.3 0.00015 28.6 2.0 20 102-121 75-94 (120)
20 1kbl_A PPDK, pyruvate phosphat 60.0 7 0.00024 37.7 3.9 26 122-147 655-683 (873)
21 2wqd_A Phosphoenolpyruvate-pro 59.5 12 0.00041 34.4 5.2 43 104-146 312-378 (572)
22 1vbg_A Pyruvate,orthophosphate 54.5 6.8 0.00023 37.8 2.8 26 122-147 662-690 (876)
23 2hwg_A Phosphoenolpyruvate-pro 53.4 14 0.00049 33.9 4.6 34 104-137 310-365 (575)
24 3rjp_A COVR; winged helix-turn 49.9 8.4 0.00029 25.7 2.0 18 102-119 61-78 (96)
25 1z1b_A Integrase; protein-DNA 48.8 29 0.00099 26.8 5.1 62 36-128 103-166 (356)
26 1tac_A TAT protein; transcript 48.3 10 0.00034 28.1 2.3 15 143-157 39-53 (86)
27 2a25_A Ubiquitin ligase SIAH1; 48.0 4 0.00014 31.9 0.1 34 74-114 25-62 (193)
28 2kj5_A Phage integrase; GFT PS 47.7 29 0.001 22.3 4.4 51 51-128 46-98 (116)
29 2k4j_A Putative transcriptiona 45.2 16 0.00056 25.7 3.0 21 101-121 79-99 (115)
30 2hqn_A Putative transcriptiona 42.7 11 0.00039 25.6 1.8 21 101-121 67-87 (109)
31 3mi9_C Protein TAT; P-TEFB, HI 40.6 8.3 0.00029 28.5 0.8 16 142-157 38-53 (86)
32 1opc_A OMPR, OMPRC; transcript 40.0 12 0.00041 25.6 1.6 20 102-121 70-89 (110)
33 2khv_A Phage integrase; soluti 39.6 57 0.002 21.1 4.8 51 49-128 40-94 (106)
34 1h1j_S THO1 protein; SAP domai 39.5 21 0.00073 23.4 2.6 25 102-126 26-50 (51)
35 2kob_A Uncharacterized protein 38.5 28 0.00097 21.9 3.1 29 100-128 62-92 (108)
36 2kzy_A ZNF216-A20, zfand5 prot 37.9 16 0.00054 25.4 1.8 24 75-98 14-37 (62)
37 1gxq_A PHOB, phosphate regulon 37.1 18 0.00062 24.6 2.1 20 101-120 69-88 (106)
38 1h6z_A Pyruvate phosphate diki 36.9 18 0.00063 35.3 2.8 37 103-146 670-709 (913)
39 3a2a_A Voltage-gated hydrogen 35.6 17 0.00056 25.2 1.6 22 104-125 37-58 (58)
40 3qfs_A CPR, P450R, NADPH--cyto 35.1 28 0.00094 30.7 3.4 46 57-102 108-153 (458)
41 2hwv_A DNA-binding response re 34.2 18 0.00061 25.8 1.7 20 102-121 82-101 (121)
42 2kj9_A Integrase; DNA_BRE_C su 34.0 44 0.0015 22.3 3.6 50 51-127 50-101 (118)
43 2c7n_A Rabex-5, GEF 1, RAB gua 33.6 14 0.00046 26.7 1.0 24 76-99 18-41 (74)
44 3lys_A Prophage PI2 protein 01 32.1 1E+02 0.0036 20.0 6.2 61 37-128 36-98 (112)
45 2dkz_A Hypothetical protein LO 31.3 22 0.00077 26.0 1.8 21 48-68 10-30 (84)
46 2e1f_A Werner syndrome ATP-dep 29.8 28 0.00096 25.0 2.2 23 129-151 14-36 (103)
47 3q9v_A DNA-binding response re 29.5 36 0.0012 24.7 2.7 19 102-120 99-117 (133)
48 1am7_A Lysozyme; glycosidase, 27.8 35 0.0012 26.8 2.6 17 105-121 136-152 (158)
49 3qe2_A CPR, P450R, NADPH--cyto 27.8 40 0.0014 30.4 3.3 46 57-102 268-313 (618)
50 4fxe_A Antitoxin RELB; toxin/a 27.4 85 0.0029 21.8 4.3 35 109-153 14-48 (79)
51 4a8e_A XER A, probable tyrosin 27.3 88 0.003 23.0 4.5 51 34-119 34-84 (292)
52 3oj3_I Tumor necrosis factor a 24.9 18 0.00063 24.3 0.4 20 76-95 21-40 (49)
53 2kv2_A Bloom syndrome protein; 24.7 38 0.0013 23.0 1.9 20 132-151 9-28 (85)
54 2pjp_A Selenocysteine-specific 24.3 29 0.001 24.5 1.4 38 37-75 68-111 (121)
55 2rhf_A DNA helicase RECQ; HRDC 24.1 55 0.0019 21.5 2.7 22 130-151 5-26 (77)
56 2lep_A Rhomboid protease GLPG 29.5 17 0.00057 24.4 0.0 23 123-153 7-29 (69)
57 2lna_A AFG3-like protein 2; st 23.0 65 0.0022 22.9 3.0 27 97-123 60-86 (99)
58 2l4d_A SCO1/SENC family protei 21.9 34 0.0012 22.3 1.3 26 46-71 74-99 (110)
59 2pk2_A Cyclin-T1, protein TAT; 21.2 20 0.00069 30.4 0.0 15 135-151 318-332 (358)
60 2osa_A N-chimaerin; RHO-GAP, G 21.1 61 0.0021 24.6 2.7 38 102-140 50-94 (202)
61 3iug_A RHO/CDC42/RAC GTPase-ac 21.1 79 0.0027 24.5 3.4 34 106-140 65-106 (229)
62 4gyx_A Type III collagen fragm 21.0 48 0.0016 20.3 1.7 13 82-94 16-28 (31)
63 4fdi_A N-acetylgalactosamine-6 20.9 52 0.0018 28.0 2.5 18 103-120 234-251 (502)
64 1v5r_A Growth-arrest-specific 20.6 14 0.00048 27.7 -0.9 14 36-49 63-76 (97)
65 2cqn_A Formin-binding protein 20.5 65 0.0022 22.2 2.5 25 31-55 6-30 (77)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=92.40 E-value=0.18 Score=37.88 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=52.0
Q ss_pred hhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHH
Q 047785 32 QKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRL 111 (174)
Q Consensus 32 QKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRL 111 (174)
.-+.+|+.|..|+.... +.+...+..||.+|+.++-..| .+..++...+.-|
T Consensus 25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l 76 (324)
T 1xo0_A 25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL 76 (324)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence 34568899999998753 2456678999999999885422 3557889999999
Q ss_pred HHHHHHhCCC-CCCCCCcc
Q 047785 112 RAAYEENGGS-PETNPFAS 129 (174)
Q Consensus 112 RAafee~Gg~-pe~NPf~a 129 (174)
++.|+-.+.. +..||+..
T Consensus 77 ~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 77 NMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHH
Confidence 9999988632 35688743
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=88.76 E-value=1.4 Score=29.98 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=49.1
Q ss_pred hhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 047785 34 RRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 113 (174)
Q Consensus 34 rrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRA 113 (174)
+++++.|..||.... -..+...+..||.+|+.|+-..| .+..|+-..+.-||+
T Consensus 33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr~ 85 (117)
T 3nrw_A 33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 578889999997642 12566778999999999885311 245688888888998
Q ss_pred HHHHh--CCCCCCCCCc
Q 047785 114 AYEEN--GGSPETNPFA 128 (174)
Q Consensus 114 afee~--Gg~pe~NPf~ 128 (174)
.|.-. -|.-+.||+.
T Consensus 86 f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 86 WLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHcCCcccCHHH
Confidence 88743 2556789975
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=85.44 E-value=2 Score=31.73 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=48.1
Q ss_pred hhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHH
Q 047785 32 QKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRL 111 (174)
Q Consensus 32 QKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRL 111 (174)
.-+..++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-|
T Consensus 26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l 77 (290)
T 1a0p_A 26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence 3456788899999887 3467778899999999976421 12456788889999
Q ss_pred HHHHHHhC--CCCCCCCCc
Q 047785 112 RAAYEENG--GSPETNPFA 128 (174)
Q Consensus 112 RAafee~G--g~pe~NPf~ 128 (174)
+++|...- |..+.||+.
T Consensus 78 ~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHhCCCccCChhh
Confidence 99988542 455689985
No 4
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=80.11 E-value=3.1 Score=26.78 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=44.2
Q ss_pred hhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHH
Q 047785 35 RDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 114 (174)
Q Consensus 35 rdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAa 114 (174)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ ..+..++..++.-||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 345557777754 45667789999999998742 12446888999999999
Q ss_pred HHHh--CCCCCCCCCc
Q 047785 115 YEEN--GGSPETNPFA 128 (174)
Q Consensus 115 fee~--Gg~pe~NPf~ 128 (174)
|+-. -|--+.||+.
T Consensus 79 ~~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHHTTCCCCCGGG
T ss_pred HHHHHHCCCcccCccc
Confidence 9743 1445689984
No 5
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=79.52 E-value=4.7 Score=26.13 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHhC--CCCCCCC
Q 047785 49 PPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG--GSPETNP 126 (174)
Q Consensus 49 PPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~G--g~pe~NP 126 (174)
.-+.|..-+..||.+|+.++-..| .+..++...+..||++|+-.= |.-+.||
T Consensus 46 g~~~l~~It~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP 99 (117)
T 2kkp_A 46 GSIPLKKLQPADIQRLYASKLESG--------------------------LSPTRVRYIHVVLHEAMSQARESGLLLQNP 99 (117)
T ss_dssp CTSCTTTCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHHHHHHHHTTTSCSSCG
T ss_pred CceEHHHCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHCCCcccCc
Confidence 345677788999999999874311 245688899999999998531 3456899
Q ss_pred Cc
Q 047785 127 FA 128 (174)
Q Consensus 127 f~ 128 (174)
+.
T Consensus 100 ~~ 101 (117)
T 2kkp_A 100 TE 101 (117)
T ss_dssp GG
T ss_pred cc
Confidence 84
No 6
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=77.42 E-value=2.1 Score=40.31 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCCC-ccchHHHHHH----HHHHHHHhh
Q 047785 108 IGRLRAAYEENGGSP-------------------------ETNPF-ASGAIRVYLR----EVRECQAKA 146 (174)
Q Consensus 108 IGRLRAafee~Gg~p-------------------------e~NPf-~araVr~YLr----eVRd~QAkA 146 (174)
..-++.+++.++++| |.||| +.|.+|+||. |+=+.|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677777777654 78999 8999999998 566666654
No 7
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=77.31 E-value=5.3 Score=24.53 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=43.4
Q ss_pred hhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHH
Q 047785 35 RDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 114 (174)
Q Consensus 35 rdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAa 114 (174)
..++.|..|+.+ +.|..-+..||.+|+.++...| +..++...+..||++
T Consensus 29 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHH
Confidence 445556666653 4566778999999999874311 246788899999999
Q ss_pred HHHh--CCCCCCCCCc
Q 047785 115 YEEN--GGSPETNPFA 128 (174)
Q Consensus 115 fee~--Gg~pe~NPf~ 128 (174)
|+-. -|.-+.||+.
T Consensus 78 ~~~a~~~~~i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGHITTNHVA 93 (103)
T ss_dssp HHHHHHTTSCSSCTTC
T ss_pred HHHHHHcCCCCCChHh
Confidence 8742 1334689985
No 8
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=73.63 E-value=1.5 Score=29.47 Aligned_cols=26 Identities=38% Similarity=0.905 Sum_probs=21.9
Q ss_pred hccCCeeeeccCCCCCCCCCCCCCCC
Q 047785 69 DQFGKTKVHLQGCMFYGQPEPPAPCT 94 (174)
Q Consensus 69 DqfGkTkVH~~~C~~fg~p~ppapC~ 94 (174)
|+.|-.|--.++|+|||-|+-.+=|+
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 56777788889999999999877775
No 9
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=73.36 E-value=4 Score=39.32 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCCCC-ccchHHHHHH--HHHHHHHhh
Q 047785 123 ETNPF-ASGAIRVYLR--EVRECQAKA 146 (174)
Q Consensus 123 e~NPf-~araVr~YLr--eVRd~QAkA 146 (174)
|.||| |.|++|+||. |+=+.|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 56999 8999999998 777788765
No 10
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.95 E-value=2 Score=28.02 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=37.3
Q ss_pred CCCCCCCchhhhhHHHhhhc-cCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCCCC
Q 047785 51 VPLSQCSCNHVLDFLRYLDQ-FGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE---NGGSPETNP 126 (174)
Q Consensus 51 l~l~~cs~~hVleFL~ylDq-fGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee---~Gg~pe~NP 126 (174)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|.- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667789999999998854 22 2346888999999999975 343 45789
Q ss_pred Cc
Q 047785 127 FA 128 (174)
Q Consensus 127 f~ 128 (174)
+.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 11
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=72.11 E-value=18 Score=23.82 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=41.2
Q ss_pred HHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh-
Q 047785 40 FGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN- 118 (174)
Q Consensus 40 f~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~- 118 (174)
|..|+.....-+.|..-+..||.+||..+...| +..++..++.-||++|.-.
T Consensus 35 l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~ 87 (121)
T 2kkv_A 35 LELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAV 87 (121)
T ss_dssp HHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchhcCCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 444443333345677788999999998764311 3457888999999998742
Q ss_pred -CCCCCCCCCc
Q 047785 119 -GGSPETNPFA 128 (174)
Q Consensus 119 -Gg~pe~NPf~ 128 (174)
-|.-+.||+.
T Consensus 88 ~~~~i~~NP~~ 98 (121)
T 2kkv_A 88 QNDYIDSNPAS 98 (121)
T ss_dssp HTTSSCSCSCS
T ss_pred HcCCcccCcHH
Confidence 2334689974
No 12
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=71.94 E-value=7 Score=28.79 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=46.6
Q ss_pred hhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 047785 34 RRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 113 (174)
Q Consensus 34 rrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRA 113 (174)
+..++.|..||.+. .+..-+..||.+|+.++-..| +..++...+.-|++
T Consensus 28 ~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~ 76 (283)
T 1z19_A 28 MSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSD 76 (283)
T ss_dssp HHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHHH
Confidence 45677888888753 466778999999999875422 23578888999999
Q ss_pred HHHHhC--CCCCCCCCc
Q 047785 114 AYEENG--GSPETNPFA 128 (174)
Q Consensus 114 afee~G--g~pe~NPf~ 128 (174)
+|+-.- |.-+.||+.
T Consensus 77 ~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 77 AFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHCCCCCcCchh
Confidence 988542 445689974
No 13
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=70.28 E-value=15 Score=23.61 Aligned_cols=58 Identities=7% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh
Q 047785 39 TFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 118 (174)
Q Consensus 39 tf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~ 118 (174)
-|. |+.+ +.|..-+..||.+|+.++.+ ..+..++..++..||++|.-.
T Consensus 32 ~i~-~~g~----~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A 79 (111)
T 2kiw_A 32 AIE-RFNT----KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYA 79 (111)
T ss_dssp HHH-HTTS----SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHCc----CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHH
Confidence 355 6543 45667789999999998742 124468888999999998743
Q ss_pred --CCCCCCCCCc
Q 047785 119 --GGSPETNPFA 128 (174)
Q Consensus 119 --Gg~pe~NPf~ 128 (174)
-|--+.||+.
T Consensus 80 ~~~~~i~~nP~~ 91 (111)
T 2kiw_A 80 YDTRLIKAMPSE 91 (111)
T ss_dssp HHTTSCSCCTTT
T ss_pred HHhCChhhCccc
Confidence 1345689984
No 14
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=67.54 E-value=2.6 Score=30.77 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 047785 103 SLDALIGRLRAAYEENGGSPE 123 (174)
Q Consensus 103 SlDALIGRLRAafee~Gg~pe 123 (174)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999988776553
No 15
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=65.88 E-value=9.7 Score=24.82 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=37.5
Q ss_pred CCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh--CCCCCCCCCc
Q 047785 51 VPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN--GGSPETNPFA 128 (174)
Q Consensus 51 l~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~--Gg~pe~NPf~ 128 (174)
+.|..-+..||.+|+.++-..| .+..++...+.-||++|.-. -|.-+.||+.
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP~~ 99 (118)
T 2kd1_A 46 IKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLELITKNVAA 99 (118)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTSCSSCTTT
T ss_pred CCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4677788999999999875311 24568888999999998743 1334579984
No 16
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=64.11 E-value=12 Score=31.63 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCCC-ccchHHHHHHH
Q 047785 105 DALIGRLRAAYEENGGSP---------------------ETNPF-ASGAIRVYLRE 138 (174)
Q Consensus 105 DALIGRLRAafee~Gg~p---------------------e~NPf-~araVr~YLre 138 (174)
+...--++.+++..+|.| |.||| +.|+||+||..
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 444446677777766652 67998 99999999983
No 17
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=63.20 E-value=3.9 Score=27.65 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 047785 102 GSLDALIGRLRAAYEENGGSP 122 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg~p 122 (174)
.+||..|-|||..+++.++.|
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998876543
No 18
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=60.88 E-value=20 Score=23.73 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh-
Q 047785 40 FGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN- 118 (174)
Q Consensus 40 f~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~- 118 (174)
+..+|.+ +.|..-+..||.+|+..+...| +..++..++.-|+++|+-.
T Consensus 38 i~~~lg~----~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av 86 (118)
T 2kj8_A 38 ILPIIGG----LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAI 86 (118)
T ss_dssp HHHHHTT----SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcC----CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 3455543 4566778999999998764321 3457888999999998743
Q ss_pred -CCCCCCCCCc
Q 047785 119 -GGSPETNPFA 128 (174)
Q Consensus 119 -Gg~pe~NPf~ 128 (174)
-|.-+.||+.
T Consensus 87 ~~~~i~~NP~~ 97 (118)
T 2kj8_A 87 VTGRAKYNPAP 97 (118)
T ss_dssp HTTSCSCCSHH
T ss_pred HcCCcccCcHH
Confidence 2445689973
No 19
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=60.83 E-value=4.3 Score=28.56 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 047785 102 GSLDALIGRLRAAYEENGGS 121 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg~ 121 (174)
.+||.+|.|||..+++.++.
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~ 94 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSH 94 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 48999999999999876654
No 20
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=59.96 E-value=7 Score=37.73 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCCCC-ccchHHHHHH--HHHHHHHhhh
Q 047785 122 PETNPF-ASGAIRVYLR--EVRECQAKAR 147 (174)
Q Consensus 122 pe~NPf-~araVr~YLr--eVRd~QAkAr 147 (174)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 683 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRAV 683 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHHH
Confidence 589999 8999999998 8888888773
No 21
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=59.53 E-value=12 Score=34.35 Aligned_cols=43 Identities=30% Similarity=0.426 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCCC-ccchHHHHHH--HHHHHHHhh
Q 047785 104 LDALIGRLRAAYEENGGS---------------------PETNPF-ASGAIRVYLR--EVRECQAKA 146 (174)
Q Consensus 104 lDALIGRLRAafee~Gg~---------------------pe~NPf-~araVr~YLr--eVRd~QAkA 146 (174)
.+...--++.+++.++|. .|.||| +.|+||++|. ++=+.|.+|
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrA 378 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRA 378 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHHH
Confidence 455666677777777665 367998 8999999995 554445443
No 22
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=54.52 E-value=6.8 Score=37.85 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCCCCC-ccchHHHHHH--HHHHHHHhhh
Q 047785 122 PETNPF-ASGAIRVYLR--EVRECQAKAR 147 (174)
Q Consensus 122 pe~NPf-~araVr~YLr--eVRd~QAkAr 147 (174)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 690 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARAI 690 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHHH
Confidence 489999 8999999998 8888888773
No 23
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=53.39 E-value=14 Score=33.90 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCCC-ccchHHHHHH
Q 047785 104 LDALIGRLRAAYEENGGS---------------------PETNPF-ASGAIRVYLR 137 (174)
Q Consensus 104 lDALIGRLRAafee~Gg~---------------------pe~NPf-~araVr~YLr 137 (174)
.+...--++.+++.++|+ .|.||| +.|+||++|.
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 455666677778877765 368998 8999999997
No 24
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=49.87 E-value=8.4 Score=25.66 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHhC
Q 047785 102 GSLDALIGRLRAAYEENG 119 (174)
Q Consensus 102 GSlDALIGRLRAafee~G 119 (174)
.+||..|.|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998765
No 25
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=48.84 E-value=29 Score=26.75 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=42.1
Q ss_pred hHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHH
Q 047785 36 DWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 115 (174)
Q Consensus 36 dwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAaf 115 (174)
.++.|..||.+ +.|..-+..||.+|+.++-..| +..++...+..|+++|
T Consensus 103 ~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 45556666643 4566678899999998775321 3357888899999998
Q ss_pred HHhC--CCCCCCCCc
Q 047785 116 EENG--GSPETNPFA 128 (174)
Q Consensus 116 ee~G--g~pe~NPf~ 128 (174)
+-.- |.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 8531 445679974
No 26
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=48.25 E-value=10 Score=28.06 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=11.8
Q ss_pred HHhhhCCcccccccC
Q 047785 143 QAKARGIPYKKKKKK 157 (174)
Q Consensus 143 QAkArgi~y~kkk~~ 157 (174)
+-|.-||+|-+||||
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 458899999887764
No 27
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=47.97 E-value=4 Score=31.94 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=17.2
Q ss_pred eeeeccCCCCCCCCCCCCCCCCchh----hhhchhHHHHHHHHHH
Q 047785 74 TKVHLQGCMFYGQPEPPAPCTCPLR----QAWGSLDALIGRLRAA 114 (174)
Q Consensus 74 TkVH~~~C~~fg~p~ppapC~CPlR----qAwGSlDALIGRLRAa 114 (174)
-..|...|.| +||.||.. .--|+++.|..-|++.
T Consensus 25 ~~~He~~C~f-------~p~~Cp~~g~~C~~~G~~~~l~~H~~~~ 62 (193)
T 2a25_A 25 KADHEELCEF-------RPYSCPCPGASCKWQGSLDAVMPHLMHQ 62 (193)
T ss_dssp ------------------CEECCCC--CCCCEECSTTHHHHHHHH
T ss_pred ccchhhcCCC-------CCccCCCCCCCCcCCCCHHHHHHHHHHH
Confidence 3469999987 77888864 2238999999999863
No 28
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=47.73 E-value=29 Score=22.35 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh--CCCCCCCCCc
Q 047785 51 VPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN--GGSPETNPFA 128 (174)
Q Consensus 51 l~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~--Gg~pe~NPf~ 128 (174)
+.|..-+..||.+|+.++-.. .+..++..++..||++|+-. -|.-+.||+.
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 98 (116)
T 2kj5_A 46 LKVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRHIIEYNPAA 98 (116)
T ss_dssp SBSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTTSCSSCGGG
T ss_pred CcHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcCccccCchh
Confidence 356667789999999876421 13467888999999998742 2345689974
No 29
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=45.19 E-value=16 Score=25.70 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=17.9
Q ss_pred hchhHHHHHHHHHHHHHhCCC
Q 047785 101 WGSLDALIGRLRAAYEENGGS 121 (174)
Q Consensus 101 wGSlDALIGRLRAafee~Gg~ 121 (174)
-.+||.+|.|||..+++.+..
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhhcCCCC
Confidence 358999999999999987653
No 30
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=42.67 E-value=11 Score=25.64 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.2
Q ss_pred hchhHHHHHHHHHHHHHhCCC
Q 047785 101 WGSLDALIGRLRAAYEENGGS 121 (174)
Q Consensus 101 wGSlDALIGRLRAafee~Gg~ 121 (174)
-.+||.+|.|||..++..++.
T Consensus 67 ~~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 67 PNVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp TTHHHHHHHHHHHHTTTTSCC
T ss_pred cchHHHHHHHHHHHhccccCC
Confidence 358999999999999876443
No 31
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=40.62 E-value=8.3 Score=28.48 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=9.8
Q ss_pred HHHhhhCCcccccccC
Q 047785 142 CQAKARGIPYKKKKKK 157 (174)
Q Consensus 142 ~QAkArgi~y~kkk~~ 157 (174)
..-|+-||+|-+||||
T Consensus 38 Fl~KGLGIsYgRkkRr 53 (86)
T 3mi9_C 38 FITKALGISYGRKKRR 53 (86)
T ss_dssp HHHTTSCCCSCC----
T ss_pred hcccCCcccccccccc
Confidence 3468899999877664
No 32
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=40.00 E-value=12 Score=25.57 Aligned_cols=20 Identities=40% Similarity=0.513 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 047785 102 GSLDALIGRLRAAYEENGGS 121 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg~ 121 (174)
.+||.+|.|||..++..|..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 58999999999999876643
No 33
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=39.63 E-value=57 Score=21.07 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.8
Q ss_pred CCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHH---hCCCCCC-
Q 047785 49 PPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE---NGGSPET- 124 (174)
Q Consensus 49 PPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee---~Gg~pe~- 124 (174)
.-+.|..-+..||.+||..+-..| + .++..+...|+++|+. .|- -+.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCCC
Confidence 456677888999999988542111 2 5788889999999874 344 456
Q ss_pred CCCc
Q 047785 125 NPFA 128 (174)
Q Consensus 125 NPf~ 128 (174)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9974
No 34
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=39.52 E-value=21 Score=23.37 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCCC
Q 047785 102 GSLDALIGRLRAAYEENGGSPETNP 126 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg~pe~NP 126 (174)
|.=..||-||.++.++.|+.++.-|
T Consensus 26 G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 26 GLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp SSHHHHHHHHHHHHHHSCC------
T ss_pred CcHHHHHHHHHHHHHhccCCcccCC
Confidence 6667999999999999998877665
No 35
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=38.52 E-value=28 Score=21.95 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.2
Q ss_pred hhchhHHHHHHHHHHHHHh--CCCCCCCCCc
Q 047785 100 AWGSLDALIGRLRAAYEEN--GGSPETNPFA 128 (174)
Q Consensus 100 AwGSlDALIGRLRAafee~--Gg~pe~NPf~ 128 (174)
+..++..++..||++|+-. -|.-+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4467888999999998743 2445689984
No 36
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=37.91 E-value=16 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.717 Sum_probs=18.6
Q ss_pred eeeccCCCCCCCCCCCCCCCCchh
Q 047785 75 KVHLQGCMFYGQPEPPAPCTCPLR 98 (174)
Q Consensus 75 kVH~~~C~~fg~p~ppapC~CPlR 98 (174)
.+=..+|.|||.|..-..|.-=+|
T Consensus 14 ~lC~ngCGFfGnpaT~nlCSkCyr 37 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCSVCYK 37 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCHHHHH
T ss_pred cchhhCCCCcCChhhcCcCHHHHH
Confidence 345688999999999999974443
No 37
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=37.08 E-value=18 Score=24.57 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=16.9
Q ss_pred hchhHHHHHHHHHHHHHhCC
Q 047785 101 WGSLDALIGRLRAAYEENGG 120 (174)
Q Consensus 101 wGSlDALIGRLRAafee~Gg 120 (174)
-.+||.+|.|||..+++.|.
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 69 DRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp THHHHHHHHHHHHHHGGGTG
T ss_pred cccHHHHHHHHHHHhcccCC
Confidence 35899999999999987653
No 38
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=36.87 E-value=18 Score=35.30 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCC-ccchHHHHHH--HHHHHHHhh
Q 047785 103 SLDALIGRLRAAYEENGGSPETNPF-ASGAIRVYLR--EVRECQAKA 146 (174)
Q Consensus 103 SlDALIGRLRAafee~Gg~pe~NPf-~araVr~YLr--eVRd~QAkA 146 (174)
+.|.++.++.. .-|.||| +.|++|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~~-------~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVNA-------LHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHHS-------SCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhcC-------CCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 35555554431 3689999 9999999996 567777765
No 39
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.59 E-value=17 Score=25.25 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 047785 104 LDALIGRLRAAYEENGGSPETN 125 (174)
Q Consensus 104 lDALIGRLRAafee~Gg~pe~N 125 (174)
-|-=|+||++...+||--||-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999888755
No 40
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=35.13 E-value=28 Score=30.70 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=30.9
Q ss_pred CchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhc
Q 047785 57 SCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWG 102 (174)
Q Consensus 57 s~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwG 102 (174)
..+.|-+||..+.-.+.+.|-.....--.....|.||+|.+|+|--
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l~ 153 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 153 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHHH
Confidence 3567889999988778887765443222223457889998887653
No 41
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=34.20 E-value=18 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 047785 102 GSLDALIGRLRAAYEENGGS 121 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg~ 121 (174)
.+||.+|-|||..+++.|..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999876543
No 42
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=34.01 E-value=44 Score=22.29 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=34.6
Q ss_pred CCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHHHh--CCCCCCCCC
Q 047785 51 VPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN--GGSPETNPF 127 (174)
Q Consensus 51 l~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafee~--Gg~pe~NPf 127 (174)
+.|..-+..||.+||..+-..| +..++..+++-|+++|+-. -|.-+.||+
T Consensus 50 ~~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 50 KDIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp SBGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CCHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 3566778899999988653211 2357888999999998743 244568986
No 43
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=33.64 E-value=14 Score=26.66 Aligned_cols=24 Identities=29% Similarity=0.647 Sum_probs=18.9
Q ss_pred eeccCCCCCCCCCCCCCCCCchhh
Q 047785 76 VHLQGCMFYGQPEPPAPCTCPLRQ 99 (174)
Q Consensus 76 VH~~~C~~fg~p~ppapC~CPlRq 99 (174)
+=..+|.|||.|..-..|.-=++.
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyrd 41 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWRE 41 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHHH
Confidence 345689999999999999865553
No 44
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=32.15 E-value=1e+02 Score=19.96 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=42.1
Q ss_pred HhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHHH
Q 047785 37 WNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 116 (174)
Q Consensus 37 wntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAafe 116 (174)
++.|..||. -+.|..-+..||.+|+.++... .+-.++..++..|+++|+
T Consensus 36 ~~~i~p~~g----~~~l~~It~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~i~~ 84 (112)
T 3lys_A 36 LKYLKTYMP----NVLISEITASSYQRALNKFAET---------------------------HAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp HHHHHHHSS----SCBTTTCCHHHHHHHHHHHHTT---------------------------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHhCCHHHHHHHHHHHHHh---------------------------ccHHHHHHHHHHHHHHHH
Confidence 345555553 3567778899999999977421 134578888999999998
Q ss_pred Hh--CCCCCCCCCc
Q 047785 117 EN--GGSPETNPFA 128 (174)
Q Consensus 117 e~--Gg~pe~NPf~ 128 (174)
-. -|.-+.||+.
T Consensus 85 ~Av~~g~i~~NP~~ 98 (112)
T 3lys_A 85 CLIEEGRLQKDFTT 98 (112)
T ss_dssp HHHHTTSCSSCTTS
T ss_pred HHHHCCCcccCccc
Confidence 43 2445689985
No 45
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.31 E-value=22 Score=25.96 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=19.3
Q ss_pred CCCCCCCCCCchhhhhHHHhh
Q 047785 48 RPPVPLSQCSCNHVLDFLRYL 68 (174)
Q Consensus 48 rPPl~l~~cs~~hVleFL~yl 68 (174)
.||..|+.=|-.+|.+||+++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999964
No 46
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=29.84 E-value=28 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHHHHHhhhCCcc
Q 047785 129 SGAIRVYLREVRECQAKARGIPY 151 (174)
Q Consensus 129 araVr~YLreVRd~QAkArgi~y 151 (174)
..++---|+..|...|+.+|+|-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677889999999999999983
No 47
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=29.51 E-value=36 Score=24.74 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 047785 102 GSLDALIGRLRAAYEENGG 120 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg 120 (174)
.+||.+|.|||..+++.|.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4799999999999998765
No 48
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=27.82 E-value=35 Score=26.80 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 047785 105 DALIGRLRAAYEENGGS 121 (174)
Q Consensus 105 DALIGRLRAafee~Gg~ 121 (174)
+--+..|+++|+++||.
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 55667999999999975
No 49
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=27.81 E-value=40 Score=30.44 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=30.7
Q ss_pred CchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhc
Q 047785 57 SCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWG 102 (174)
Q Consensus 57 s~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwG 102 (174)
.++.|-+||..+.-.+.+.|......--.....|.||+|++|++--
T Consensus 268 ~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 268 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEEESCTTCSCCSSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEEecCCccccCCCCCCCceEHHHhhh
Confidence 3567888998887777787765443222233456789999988754
No 50
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=27.40 E-value=85 Score=21.76 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHHHHhhhCCcccc
Q 047785 109 GRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIPYKK 153 (174)
Q Consensus 109 GRLRAafee~Gg~pe~NPf~araVr~YLreVRd~QAkArgi~y~k 153 (174)
-+--++|++.|-.+ +-||++||+.|= ..+|||++-
T Consensus 14 ~~a~~v~~~lGl~~------s~Ai~~fl~~v~----~~~~iPF~~ 48 (79)
T 4fxe_A 14 ARSYAALEKMGVTP------SEALRLMLEYIA----DNERLPFKQ 48 (79)
T ss_dssp HHHHHHHHHHTCCH------HHHHHHHHHHHH----HHSSCSSCC
T ss_pred HHHHHHHHHhCCCH------HHHHHHHHHHHH----HhCCCCCcc
Confidence 34557788888774 579999998873 447888853
No 51
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=27.26 E-value=88 Score=23.01 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=37.3
Q ss_pred hhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 047785 34 RRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 113 (174)
Q Consensus 34 rrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRA 113 (174)
+..++.|..| +...+..||.+|+.++-..| .+..++...+.-|++
T Consensus 34 ~~~l~~~~~~---------~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~ 78 (292)
T 4a8e_A 34 TYYISKFFEE---------GHSPTARDALRFLAKLKRKG--------------------------YSTRSLNLVIQALKA 78 (292)
T ss_dssp HHHHHHHHHH---------TCCSSHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 3456666666 67788999999999886432 234678888899999
Q ss_pred HHHHhC
Q 047785 114 AYEENG 119 (174)
Q Consensus 114 afee~G 119 (174)
+|+...
T Consensus 79 ~~~~a~ 84 (292)
T 4a8e_A 79 YFKFEG 84 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988654
No 52
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=24.87 E-value=18 Score=24.27 Aligned_cols=20 Identities=35% Similarity=0.894 Sum_probs=15.4
Q ss_pred eeccCCCCCCCCCCCCCCCC
Q 047785 76 VHLQGCMFYGQPEPPAPCTC 95 (174)
Q Consensus 76 VH~~~C~~fg~p~ppapC~C 95 (174)
--..+|.|||.|..-.-|..
T Consensus 21 C~~ngCGFfG~p~t~n~CSk 40 (49)
T 3oj3_I 21 CRKAGCVYFGTPENKGFCTL 40 (49)
T ss_dssp CSSTTCSSBCBGGGTTBCHH
T ss_pred cccCCCCCccCcccCCcchH
Confidence 33479999999988777753
No 53
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=24.66 E-value=38 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhCCcc
Q 047785 132 IRVYLREVRECQAKARGIPY 151 (174)
Q Consensus 132 Vr~YLreVRd~QAkArgi~y 151 (174)
+---|++.|+..|+.+|||-
T Consensus 9 l~~~L~~wR~~~A~~~~vp~ 28 (85)
T 2kv2_A 9 CLGELTEVCKSLGKVFGVHY 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHcCCCc
Confidence 44568999999999999983
No 54
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.34 E-value=29 Score=24.50 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred HhHHHHHHHhCCCCCCCC------CCCchhhhhHHHhhhccCCee
Q 047785 37 WNTFGQYLKNQRPPVPLS------QCSCNHVLDFLRYLDQFGKTK 75 (174)
Q Consensus 37 wntf~qyL~n~rPPl~l~------~cs~~hVleFL~ylDqfGkTk 75 (174)
++.+.+|+..+ ++++++ --|-+-++-+|.|+|+.|-|+
T Consensus 68 ~~~l~~~~~~~-~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~Tr 111 (121)
T 2pjp_A 68 ANMIRDLDQEC-GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTR 111 (121)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHC-CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeE
Confidence 45566666665 666665 356677888999999999997
No 55
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=24.06 E-value=55 Score=21.52 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHhhhCCcc
Q 047785 130 GAIRVYLREVRECQAKARGIPY 151 (174)
Q Consensus 130 raVr~YLreVRd~QAkArgi~y 151 (174)
.+|---|++.|+..|+.++||-
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp 26 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSA 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4566679999999999999983
No 56
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=29.48 E-value=17 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.2
Q ss_pred CCCCCccchHHHHHHHHHHHHHhhhCCcccc
Q 047785 123 ETNPFASGAIRVYLREVRECQAKARGIPYKK 153 (174)
Q Consensus 123 e~NPf~araVr~YLreVRd~QAkArgi~y~k 153 (174)
-.||..|.++..||+. +||..+=
T Consensus 7 ~~N~~~Aq~f~dyL~s--------~gI~~~v 29 (69)
T 2lep_A 7 FANPRVAQAFVDYMAT--------QGVILTI 29 (69)
Confidence 3799999999999986 6665543
No 57
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=22.97 E-value=65 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.5
Q ss_pred hhhhhchhHHHHHHHHHHHHHhCCCCC
Q 047785 97 LRQAWGSLDALIGRLRAAYEENGGSPE 123 (174)
Q Consensus 97 lRqAwGSlDALIGRLRAafee~Gg~pe 123 (174)
..-.-||+|.+--+|.+|=+|+|..|+
T Consensus 60 ~~f~IGSvd~FE~~Le~aQ~el~i~~~ 86 (99)
T 2lna_A 60 VWFNIGSVDTFERNLETLQQELGIEGE 86 (99)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHcCCCcc
Confidence 355669999999999999999998776
No 58
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=21.94 E-value=34 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=16.3
Q ss_pred hCCCCCCCCCCCchhhhhHHHhhhcc
Q 047785 46 NQRPPVPLSQCSCNHVLDFLRYLDQF 71 (174)
Q Consensus 46 n~rPPl~l~~cs~~hVleFL~ylDqf 71 (174)
...|+..|+.=--.+|++||..+...
T Consensus 74 ~~Mp~~~Ls~~ei~~l~~yl~~~~~~ 99 (110)
T 2l4d_A 74 LAMPNMRLGDAEVSALISYLEEETAR 99 (110)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHcccc
Confidence 36788876544455667777766543
No 59
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=21.22 E-value=20 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCcc
Q 047785 135 YLREVRECQAKARGIPY 151 (174)
Q Consensus 135 YLreVRd~QAkArgi~y 151 (174)
|=.-|.=.+ | -||.|
T Consensus 318 ~~~~~~~~~-~-~~~~~ 332 (358)
T 2pk2_A 318 YHCQLCFLR-S-LGIDY 332 (358)
T ss_dssp -----------------
T ss_pred eecHHHhcc-c-cceee
Confidence 333333333 6 99999
No 60
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=21.12 E-value=61 Score=24.57 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHhCCCCC------CCCC-ccchHHHHHHHHH
Q 047785 102 GSLDALIGRLRAAYEENGGSPE------TNPF-ASGAIRVYLREVR 140 (174)
Q Consensus 102 GSlDALIGRLRAafee~Gg~pe------~NPf-~araVr~YLreVR 140 (174)
|+. +-|-.||.+|++.|...+ .++. .|.+++.||||.-
T Consensus 50 g~~-~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLp 94 (202)
T 2osa_A 50 GFS-DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 94 (202)
T ss_dssp CCH-HHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCS
T ss_pred CcH-HHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCC
Confidence 444 457889999998763222 1222 5889999999864
No 61
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=21.10 E-value=79 Score=24.47 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCCC--CCCC------ccchHHHHHHHHH
Q 047785 106 ALIGRLRAAYEENGGSPE--TNPF------ASGAIRVYLREVR 140 (174)
Q Consensus 106 ALIGRLRAafee~Gg~pe--~NPf------~araVr~YLreVR 140 (174)
+-|-+||..|+. |..+. .+++ .+.+++.||||.-
T Consensus 65 ~~i~~L~~~~~~-~~~~~~~~~~~~~dvh~va~lLK~fLreLP 106 (229)
T 3iug_A 65 SNIQRLRHEFDS-EHVPDLTKEPYVQDIHSVGSLCKLYFRELP 106 (229)
T ss_dssp HHHHHHHHHHHT-TCCCCTTSTTTTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc-CCCCCccccccccchHHHHHHHHHHHHHCC
Confidence 457789999986 33332 2222 6889999999853
No 62
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=20.95 E-value=48 Score=20.27 Aligned_cols=13 Identities=54% Similarity=1.226 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 047785 82 MFYGQPEPPAPCT 94 (174)
Q Consensus 82 ~~fg~p~ppapC~ 94 (174)
.|-|.|.||.||-
T Consensus 16 gfpgppgppgpcc 28 (31)
T 4gyx_A 16 GFPGPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCCCCC
T ss_pred cCCCCCCCCCCCc
Confidence 4678889999983
No 63
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=20.87 E-value=52 Score=27.97 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhCC
Q 047785 103 SLDALIGRLRAAYEENGG 120 (174)
Q Consensus 103 SlDALIGRLRAafee~Gg 120 (174)
.+|..||||-.+.++.|-
T Consensus 234 ~~D~~vG~il~~L~~~gl 251 (502)
T 4fdi_A 234 EIDDSIGKILELLQDLHV 251 (502)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 689999999999999764
No 64
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=20.61 E-value=14 Score=27.66 Aligned_cols=14 Identities=43% Similarity=1.028 Sum_probs=12.4
Q ss_pred hHhHHHHHHHhCCC
Q 047785 36 DWNTFGQYLKNQRP 49 (174)
Q Consensus 36 dwntf~qyL~n~rP 49 (174)
-|.||.+||..|.|
T Consensus 63 GW~~L~~yL~khdp 76 (97)
T 1v5r_A 63 GWETFAGYLLKHDP 76 (97)
T ss_dssp EEEEHHHHHHHHCH
T ss_pred cHHHHHHHHHHcCc
Confidence 39999999999877
No 65
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.52 E-value=65 Score=22.21 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.5
Q ss_pred hhhhhhHhHHHHHHHhCCCCCCCCC
Q 047785 31 SQKRRDWNTFGQYLKNQRPPVPLSQ 55 (174)
Q Consensus 31 sQKrrdwntf~qyL~n~rPPl~l~~ 55 (174)
.+.++.-..|...|+.+.||++..+
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s 30 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDA 30 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3567888999999999999999874
Done!