BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047787
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 642 GSESPTNNG-SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
G+E +G C +C+E YA GE++ +L C H FH +CI WL + + CP+C+
Sbjct: 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 652 CCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRKNQCPICKMT 695
C +C + DGE L CGH FH C+ WL + CP+C++T
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C +C E + + LG C H FH C+ +WL + CP+C M
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 60
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
N C IC E + + L +C H F CI +W+ RK +CPIC+
Sbjct: 52 NELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
N C IC E + + L +C H F CI +W+ RK +CPIC+
Sbjct: 52 NELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
N C IC E + + L +C H F CI +W+ RK +CPIC+
Sbjct: 63 NELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 105
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 652 CC-ICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
CC IC +Y G+ +L C H FH C+ WL + CP+C+
Sbjct: 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
C +C + + L L C H+FH C+ +WL CPIC+
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 646 PTNNGSCCICQEKYADGENLGKL----DCGHDFHPNCIKQWLVRKNQCPICK 693
P+ SC IC + Y++ G+L +CGH F C++ L N CP C+
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 646 PTNNGSCCICQEKYADGENLGKL----DCGHDFHPNCIKQWLVRKNQCPICK 693
P+ SC IC + Y++ G+L +CGH F C++ L N CP C+
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK--MTG 696
T+ CCIC + AD L C H F CI +W R CPIC+ MTG
Sbjct: 13 TDEEECCICMDGRADL----ILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 651 SCCICQEKYADGENLGKL----DCGHDFHPNCIKQWLVRKNQCPICK 693
SC IC + Y++ G+L +CGH F C++ L N CP C+
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 651 SCCICQEKYADGENLGKL----DCGHDFHPNCIKQWLVRKNQCPICK 693
SC IC + Y++ G+L +CGH F C++ L N CP C+
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 651 SCCICQEKYADGENLGKL----DCGHDFHPNCIKQWLVRKNQCPICK 693
SC IC + Y++ G+L +CGH F C++ L N CP C+
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 669 DCGHDFHPNCIKQWLVRKNQCPICK 693
+C H FH C+ W+ + N+CP+C+
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQW---LVRKNQCPIC 692
SC +C E + ++CGH+F CI +W L R CP+C
Sbjct: 16 ASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 652 CCICQEKYADGENLGKL--DCGHDFHPNCIKQWLVRKNQCPICKMT 695
C IC E + N+ + C H++ CI+++L K QCP C +T
Sbjct: 25 CGICFEYF----NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVT 66
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 652 CCICQEKYADGENLG-KLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARIH 701
C IC E D N L C H F CI +W+ + CP+CK+ + +H
Sbjct: 8 CPICLE---DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
C +C + D + ++C H F CI ++L CPIC
Sbjct: 18 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
C +C + D + ++C H F CI ++L CPIC
Sbjct: 18 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
C +C + D + ++C H F CI ++L CPIC
Sbjct: 14 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 670 CGHDFHPNCIKQWLVRKNQCPI 691
C H FH +CI +WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 76 FQRKHPG-NGRVENESLMVQQANVSAAQHTSSIDLNATREQQQEIGGGQTLSNPAKPDGP 134
F+ ++PG NG E Q + + + + + + +G G+ L N DG
Sbjct: 424 FETEYPGPNG----EKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGS 479
Query: 135 VSTADQNILPAAGTDSSKPILISSGGGNP 163
S D ++ P++ SSG G P
Sbjct: 480 NSGYDLELIEHVKDAVKIPVIASSGAGVP 508
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 76 FQRKHPG-NGRVENESLMVQQANVSAAQHTSSIDLNATREQQQEIGGGQTLSNPAKPDGP 134
F+ ++PG NG E Q + + + + + + +G G+ L N DG
Sbjct: 424 FETEYPGPNG----EKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGS 479
Query: 135 VSTADQNILPAAGTDSSKPILISSGGGNP 163
S D ++ P++ SSG G P
Sbjct: 480 NSGYDLELIEHVKDAVKIPVIASSGAGVP 508
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 651 SCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRKNQCPIC 692
+C IC E + L CGH H C ++ L +CP+C
Sbjct: 7 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3QZU|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
pdb|3QZU|B Chain B, Crystal Structure Of Bacillus Subtilis Lipase A 7-Fold
Mutant; The Outcome Of Directed Evolution Towards
Thermostability
Length = 181
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 132 DGPV-STADQNILPAAGTDSSKPILISSGGGNPLKAVGDTSGQGHGKGGASSSNNNRPSF 190
+GPV S Q +L G + S GG N L + + G + NR +
Sbjct: 51 NGPVLSRFVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTT 110
Query: 191 KRRAPGDAPRQLLLGESSSSVQQEQARESEQDDVVAAPQEIGGTVALNNEITGVGMLGAA 250
PG P Q +L S S S D V+ + G A N +I GVG +G
Sbjct: 111 GDALPGTDPNQKILYTSIYS--------SADDIVMNCLSRLDG--ARNVQIHGVGHMGLL 160
Query: 251 NSSAMN 256
SS +N
Sbjct: 161 YSSQVN 166
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 647 TNNGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRKNQCPIC 692
+ + C IC E + L CGH H C ++ L +CP+C
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 645 SPTNNGSCCICQEKYADGENLGKL--DCGHDFHPNC 678
S ++G C ICQE+Y++ N + CG +H C
Sbjct: 2 SSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLC 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,742,121
Number of Sequences: 62578
Number of extensions: 796423
Number of successful extensions: 1469
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 97
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)