BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047787
(701 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 602 RLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRY--GSESPTNNGSCCICQEKY 659
+D D+++YEELLALGD +G GL + I A+L +RY G N SC IC+ Y
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTI-ASLPSKRYKEGDNQNGTNESCVICRLDY 295
Query: 660 ADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692
D E+L L C H +H CI WL CP+C
Sbjct: 296 EDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 603 LDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS----CCICQEK 658
+D D MTYEEL+ LG+ +G GL +E ++ L ++Y S + C ICQ K
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQE-LIETLPTKKYKFGSIFSRKRAGERCVICQLK 203
Query: 659 YADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC--KMTGLARIH 701
Y GE L C H +H CI +WL CP+C ++ G IH
Sbjct: 204 YKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVFGEPSIH 248
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 584 VFLGPFEEEDEEDELEDMRLDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYG- 642
VF G F E L + L D+ YE+LLAL +GP ++ + ++ V+R G
Sbjct: 698 VFGGLFPEH--HPVLSTVSLFSDNPMYEDLLALTTYLGPA-----KKPVASHEDVKRSGG 750
Query: 643 ------SESPTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVR-KNQCPICKM 694
S ++ SC IC E Y +G+ KL C H FH CI QWL N CP+C+
Sbjct: 751 LFAYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810
Query: 695 TGLA 698
G+
Sbjct: 811 HGVT 814
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNG-------------SCCIC 655
+YEELL L D +G V G + I +Y P ++ C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 656 QEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
DGE++ +L C H FH C+ QWL +CPIC++
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 609 TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTN-------------NGSCCIC 655
+YEELL L D +G V G + I +Y P + + C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 656 QEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
DGE++ +L C H FH C+ QWL +CPIC++
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685
GL +E I NL+ + YG +C +C +Y +G L KL C H++H +CI +WL
Sbjct: 680 GLTKEQI-DNLSTRNYGENDALK--TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE 736
Query: 686 KNQCPICKMTGLA 698
+ CPIC+ L
Sbjct: 737 NSTCPICRRAVLV 749
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 613 LLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGH 672
LL DE P GL +E I NL ++ +G +C +C +Y +G L KL C H
Sbjct: 512 LLNEDDEDQP--RGLTKEQI-DNLAMRSFGENDALK--TCSVCITEYTEGNKLRKLPCSH 566
Query: 673 DFHPNCIKQWLVRKNQCPICKMTGLA 698
++H +CI +WL + CPIC+ L+
Sbjct: 567 EYHVHCIDRWLSENSTCPICRRAVLS 592
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 613 LLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGH 672
LL D+ P GL +E I NL ++ +G +C +C +Y +G L KL C H
Sbjct: 536 LLNEDDDDQP--RGLTKEQI-DNLAMRSFGENDALK--TCSVCITEYTEGNKLRKLPCSH 590
Query: 673 DFHPNCIKQWLVRKNQCPICKMTGLA 698
++H +CI +WL + CPIC+ LA
Sbjct: 591 EYHVHCIDRWLSENSTCPICRRAVLA 616
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685
GL +E I NL+ + +G +C +C +Y +G L KL C H++H +CI +WL
Sbjct: 545 GLTKEQI-DNLSTRNFGENDALK--TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE 601
Query: 686 KNQCPICKMTGLA 698
+ CPIC+ L
Sbjct: 602 NSTCPICRRAVLV 614
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685
GL +E I NL+ + +G +C +C +Y +G L KL C H++H +CI +WL
Sbjct: 562 GLTKEQI-DNLSTRNFGENDALK--TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 618
Query: 686 KNQCPICKMTGLA 698
+ CPIC+ L
Sbjct: 619 NSTCPICRRAVLV 631
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 632 ILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPI 691
I ++++G+E+ CCIC+E G+ + +L C H FHP C+K WL N CPI
Sbjct: 215 IFTEELLKKFGAEA-----ECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPI 269
Query: 692 CK 693
C+
Sbjct: 270 CR 271
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 642 GSESPTN------NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
G++SP + CCIC Y DG L +L CGH FH +C+ +WL CP+CK
Sbjct: 337 GTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCK 394
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 630 EAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQC 689
E ++A + VQ+ E G C IC E + +++ +L C H FH NCIK WL C
Sbjct: 374 EDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTC 433
Query: 690 PICK 693
IC+
Sbjct: 434 AICR 437
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 640 RYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
++ E ++ C IC E Y + + L C H+FH NCI WL+ CP+CK+ L
Sbjct: 291 KFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVL 348
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%)
Query: 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697
+ CCIC Y DG L L C H FH CI +WL + CP+CK L
Sbjct: 304 DADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNIL 352
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 642 GSESPTN------NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695
G++SP + CCIC +Y DG L +L C H FH CI +WL ++CP+CK
Sbjct: 322 GTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFN 381
Query: 696 GL 697
L
Sbjct: 382 IL 383
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
P + CCIC Y D L +L CGH FH C+ +WL CP+CK
Sbjct: 319 PHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCK 366
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 601 MRLDIDDM---TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS-CCICQ 656
+ LD+DD+ YE LL L + +G +A + L R+ E+ + + C +C
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCF 400
Query: 657 EKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
+ + L L C H+FH C+ +WL CPIC+
Sbjct: 401 SDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 626 GLREEAILANLTVQRYGSESPTNN--GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL 683
GL +E I NL+ + Y S + C +C Y G L +L C H+FH +CI +WL
Sbjct: 605 GLTKEQI-DNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWL 663
Query: 684 VRKNQCPICK 693
CPIC+
Sbjct: 664 SENCTCPICR 673
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 601 MRLDIDDM---TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS-CCICQ 656
+ LD+DD+ YE LL L + +G +A + L R+ +S + + C +C
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCF 384
Query: 657 EKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
+ + L L C H+FH C+ +WL CPIC+
Sbjct: 385 SDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
C IC EKY DGE L + C H FH C+ WL++ + CP C+
Sbjct: 290 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 331
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 610 YEELLALGDEIGPVCTGLREEAILANLTVQRYGSES------------PTNNGSCCICQE 657
+EEL+ L + +G V G + I +Y C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 658 KYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
+GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 976
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
C IC EKY DGE L + C H FH C+ WL++ + CP C+
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 334
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 603 LDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRY---GSESPTNNGSCCICQEKY 659
L I + + LL GD+ P+ GL +E I NL+ + Y G +S C +C Y
Sbjct: 566 LPILRLAHFFLLNEGDD-DPI-RGLTKEQI-DNLSTRSYEQDGVDSELGK-VCSVCISDY 621
Query: 660 ADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
G L +L C H+FH +CI +WL CP+C+
Sbjct: 622 VAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCR 655
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
C IC EKY DGE L + C H FH C+ WL++ + CP C+
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCR 308
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 601 MRLDIDDM---TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS-CCICQ 656
+ LD+DD+ YE LL L + +G +A + L R+ +S + + C +C
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCF 359
Query: 657 EKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
+ + L L C H+FH C+ +WL CPIC+
Sbjct: 360 SDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 396
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 636 LTVQRYGSESPTNNG-SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
L V + G E NG SC IC E+Y + + L C H FH NCI W++ CPICK
Sbjct: 239 LRVVKEGDEEINPNGDSCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICK 297
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
C IC EKY DGE L + C H FH C+ WL++ + CP C+
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 307
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 907 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 949
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
C IC E+Y DG+ L L C H +H C+ WL + K CP+CK
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
C IC E+Y DG+ L L C H +H C+ WL + K CP+CK
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 902 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 944
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 871 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 913
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 937 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 979
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 942 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 984
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694
C IC +GE++ +L C H FH C+ QWL+ +CPIC++
Sbjct: 915 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 957
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
C IC EKY DGE L + C H FH C+ WL++ + CP C+
Sbjct: 202 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 243
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 603 LDIDDMTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTN--NGSCCICQEKYA 660
L D TYE++L L IG + + + + +++ G P + + C +C +
Sbjct: 479 LFTDSPTYEDMLLLNSIIG-----IEKPPVASQKDLEKAGGVFPFSGTDERCLVCLSNFE 533
Query: 661 DGENLGKLD-CGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698
+ +L C H FH CI QWL +N CP+C+ G+A
Sbjct: 534 LNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVA 573
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 636 LTVQRYGSESPTNNG-SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
L V + G E NG SC IC E Y + + L C H FH NCI W++ CPICK
Sbjct: 239 LRVVKEGDEEINPNGDSCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILSHGTCPICK 297
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 601 MRLDIDD---MTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS----CC 653
LD++D YE LL L + +G +A + L R+ P+N+ S C
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFN---PSNHQSEQTLCV 467
Query: 654 ICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
+C + + L L C H+FH C+ +WL CPIC+
Sbjct: 468 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICR 507
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 601 MRLDIDDM---TYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS-CCICQ 656
+ LD+DD+ YE LL L + +G +A + L R+ +S + + C +C
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCF 302
Query: 657 EKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
+ + L L C H+FH C+ +WL CPIC+
Sbjct: 303 SDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK--MTG 696
C +C+E YA GE++ +L C H FH +CI WL + + CP+C+ +TG
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 277
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 601 MRLDIDD---MTYEELLALGDEIGPVCTGLREEAILANLTVQRYGSESPTNNGS----CC 653
LD++D YE LL L + +G +A + L R+ P N+ S C
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFN---PNNHQSEQTLCV 464
Query: 654 ICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
+C + + L L C H+FH C+ +WL CPIC+
Sbjct: 465 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 504
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
C IC ++Y DG+ L L C H +H C+ WL + K CP+CK
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
C IC ++Y DG+ L L C H +H C+ WL + K CP+CK
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
N SC IC E Y E + L C H FH NCI W++ CP+CK
Sbjct: 252 NADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCK 297
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693
E N SC IC E Y E + L C H FH NCI W++ CP+CK
Sbjct: 248 EVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCK 297
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 626 GLREEAILANLTVQRYGSESPTNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLV 684
GL +A+ +L V RY + N C IC + +GE + + CGH FH +C+ WL
Sbjct: 115 GLDSQAV-RSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLS 173
Query: 685 RKNQCPICK 693
CP+C+
Sbjct: 174 SYVTCPLCR 182
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
C IC ++Y DG+ L L C H +H C+ WL + K CP+CK
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICK 693
C IC ++Y DG+ L L C H +H C+ WL + K CP+CK
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,954,646
Number of Sequences: 539616
Number of extensions: 12800987
Number of successful extensions: 35864
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 34629
Number of HSP's gapped (non-prelim): 1232
length of query: 701
length of database: 191,569,459
effective HSP length: 125
effective length of query: 576
effective length of database: 124,117,459
effective search space: 71491656384
effective search space used: 71491656384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)