Query 047787
Match_columns 701
No_of_seqs 246 out of 1793
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047787.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047787hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 2.2E-14 4.7E-19 152.5 4.8 69 630-698 209-279 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 1.3E-13 2.9E-18 105.3 2.2 44 650-693 1-44 (44)
3 COG5540 RING-finger-containing 99.1 3.9E-11 8.4E-16 125.7 3.6 50 649-698 323-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 7.4E-11 1.6E-15 100.3 4.1 47 647-693 17-73 (73)
5 PHA02929 N1R/p28-like protein; 99.0 2E-10 4.4E-15 117.4 5.4 70 629-698 151-228 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 7.6E-11 1.6E-15 126.0 1.6 52 646-697 284-345 (491)
7 KOG0317 Predicted E3 ubiquitin 98.9 9.6E-10 2.1E-14 114.6 3.8 51 645-698 235-285 (293)
8 cd00162 RING RING-finger (Real 98.8 3.5E-09 7.6E-14 77.5 3.8 44 651-696 1-45 (45)
9 PLN03208 E3 ubiquitin-protein 98.8 3.6E-09 7.7E-14 105.5 4.4 48 647-697 16-79 (193)
10 KOG0823 Predicted E3 ubiquitin 98.8 2.9E-09 6.4E-14 108.2 3.4 49 646-697 44-95 (230)
11 KOG0320 Predicted E3 ubiquitin 98.8 3.9E-09 8.5E-14 104.0 3.4 52 646-698 128-179 (187)
12 KOG0802 E3 ubiquitin ligase [P 98.8 2.6E-09 5.6E-14 119.4 2.3 52 646-697 288-341 (543)
13 PF13920 zf-C3HC4_3: Zinc fing 98.7 5E-09 1.1E-13 82.3 2.3 46 649-697 2-48 (50)
14 PF13923 zf-C3HC4_2: Zinc fing 98.7 7.7E-09 1.7E-13 77.7 3.0 39 652-692 1-39 (39)
15 smart00504 Ubox Modified RING 98.6 3.2E-08 7E-13 79.5 4.0 44 650-696 2-45 (63)
16 PHA02926 zinc finger-like prot 98.6 3E-08 6.5E-13 100.9 3.6 51 647-697 168-230 (242)
17 PF15227 zf-C3HC4_4: zinc fing 98.6 2.6E-08 5.6E-13 77.0 2.3 38 652-692 1-42 (42)
18 PF14634 zf-RING_5: zinc-RING 98.5 5.8E-08 1.2E-12 75.0 3.2 44 651-694 1-44 (44)
19 PF12861 zf-Apc11: Anaphase-pr 98.5 5.3E-08 1.1E-12 86.3 3.3 51 647-697 19-82 (85)
20 TIGR00599 rad18 DNA repair pro 98.5 6.1E-08 1.3E-12 105.6 3.9 49 647-698 24-72 (397)
21 smart00184 RING Ring finger. E 98.5 9.1E-08 2E-12 67.6 3.3 38 652-692 1-39 (39)
22 PF00097 zf-C3HC4: Zinc finger 98.5 6.2E-08 1.3E-12 72.6 2.3 39 652-692 1-41 (41)
23 COG5574 PEX10 RING-finger-cont 98.3 2.3E-07 5E-12 96.2 2.7 50 647-699 213-264 (271)
24 KOG2164 Predicted E3 ubiquitin 98.3 4.5E-07 9.8E-12 100.7 3.1 47 649-698 186-237 (513)
25 KOG2177 Predicted E3 ubiquitin 98.2 5.4E-07 1.2E-11 85.7 1.8 45 647-694 11-55 (386)
26 KOG1734 Predicted RING-contain 98.1 5.7E-07 1.2E-11 93.8 0.8 52 646-697 221-281 (328)
27 KOG0287 Postreplication repair 98.1 7.6E-07 1.6E-11 95.2 1.6 47 648-697 22-68 (442)
28 COG5194 APC11 Component of SCF 98.1 1.8E-06 3.9E-11 76.2 3.4 53 645-697 16-81 (88)
29 KOG2930 SCF ubiquitin ligase, 98.1 7.5E-07 1.6E-11 81.7 1.1 54 643-696 40-107 (114)
30 KOG0828 Predicted E3 ubiquitin 98.1 1.4E-06 2.9E-11 96.7 2.3 52 647-698 569-635 (636)
31 PF13445 zf-RING_UBOX: RING-ty 98.1 2.6E-06 5.7E-11 66.8 2.7 38 652-690 1-43 (43)
32 PF04564 U-box: U-box domain; 98.0 2.6E-06 5.6E-11 72.3 2.2 48 648-698 3-51 (73)
33 KOG1493 Anaphase-promoting com 98.0 1.6E-06 3.5E-11 75.9 1.0 52 645-696 16-80 (84)
34 COG5219 Uncharacterized conser 98.0 1.9E-06 4.1E-11 100.7 0.7 53 644-696 1464-1522(1525)
35 COG5432 RAD18 RING-finger-cont 97.9 3.7E-06 8.1E-11 88.6 2.3 46 647-695 23-68 (391)
36 smart00744 RINGv The RING-vari 97.9 8.4E-06 1.8E-10 65.2 3.4 42 651-693 1-49 (49)
37 PF11793 FANCL_C: FANCL C-term 97.9 2.5E-06 5.4E-11 72.5 0.3 51 649-699 2-68 (70)
38 KOG4265 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 85.4 2.8 51 647-700 288-339 (349)
39 KOG0825 PHD Zn-finger protein 97.5 1.8E-05 3.8E-10 91.6 -0.1 52 647-698 121-172 (1134)
40 KOG1039 Predicted E3 ubiquitin 97.5 3.6E-05 7.9E-10 83.0 2.2 50 647-696 159-220 (344)
41 KOG0311 Predicted E3 ubiquitin 97.4 2.6E-05 5.7E-10 84.0 -1.3 51 647-699 41-92 (381)
42 KOG0978 E3 ubiquitin ligase in 97.3 6.9E-05 1.5E-09 86.8 1.3 47 649-698 643-690 (698)
43 KOG4445 Uncharacterized conser 97.2 0.00011 2.3E-09 78.2 0.4 55 643-697 109-186 (368)
44 PF14835 zf-RING_6: zf-RING of 97.1 0.00011 2.4E-09 62.7 -0.2 45 650-698 8-52 (65)
45 KOG4172 Predicted E3 ubiquitin 97.1 0.00018 3.9E-09 60.1 0.8 47 649-698 7-55 (62)
46 KOG4159 Predicted E3 ubiquitin 97.0 0.00037 8.1E-09 76.7 3.2 48 647-697 82-129 (398)
47 KOG0804 Cytoplasmic Zn-finger 97.0 0.0003 6.5E-09 78.0 1.7 49 647-697 173-222 (493)
48 KOG1428 Inhibitor of type V ad 97.0 0.00046 9.9E-09 83.9 3.1 53 645-697 3482-3544(3738)
49 KOG4275 Predicted E3 ubiquitin 96.8 0.00022 4.8E-09 75.7 -0.7 43 649-698 300-343 (350)
50 KOG4692 Predicted E3 ubiquitin 96.8 0.00096 2.1E-08 72.5 3.3 50 646-698 419-468 (489)
51 KOG0297 TNF receptor-associate 96.6 0.0009 1.9E-08 73.2 2.1 51 646-698 18-68 (391)
52 KOG2660 Locus-specific chromos 96.6 0.00053 1.2E-08 73.6 0.2 51 647-699 13-63 (331)
53 KOG1785 Tyrosine kinase negati 96.6 0.00077 1.7E-08 74.1 1.3 47 649-698 369-417 (563)
54 KOG2879 Predicted E3 ubiquitin 96.6 0.0018 3.8E-08 68.4 3.8 51 645-697 235-287 (298)
55 KOG1941 Acetylcholine receptor 96.4 0.0011 2.3E-08 72.9 0.9 46 649-694 365-413 (518)
56 PF11789 zf-Nse: Zinc-finger o 96.2 0.0017 3.8E-08 53.7 1.1 42 648-691 10-53 (57)
57 COG5152 Uncharacterized conser 96.2 0.0019 4E-08 65.9 1.1 47 649-698 196-242 (259)
58 KOG1814 Predicted E3 ubiquitin 96.0 0.0046 1E-07 68.3 3.0 47 649-695 184-238 (445)
59 KOG3970 Predicted E3 ubiquitin 96.0 0.0061 1.3E-07 63.2 3.6 52 648-700 49-108 (299)
60 KOG1813 Predicted E3 ubiquitin 95.7 0.0037 8.1E-08 66.6 1.0 48 649-699 241-288 (313)
61 KOG2034 Vacuolar sorting prote 95.6 0.0037 8E-08 74.1 0.7 39 645-684 813-851 (911)
62 KOG1002 Nucleotide excision re 95.5 0.0063 1.4E-07 69.1 1.6 49 645-696 532-585 (791)
63 PF04641 Rtf2: Rtf2 RING-finge 95.3 0.018 4E-07 59.7 4.2 51 646-697 110-161 (260)
64 KOG0827 Predicted E3 ubiquitin 95.1 0.0016 3.5E-08 71.4 -4.2 50 648-697 195-245 (465)
65 KOG0801 Predicted E3 ubiquitin 95.1 0.0073 1.6E-07 60.1 0.6 30 647-676 175-204 (205)
66 KOG3039 Uncharacterized conser 95.0 0.018 3.8E-07 60.5 3.3 50 648-697 220-270 (303)
67 KOG1571 Predicted E3 ubiquitin 95.0 0.012 2.6E-07 64.1 2.1 47 645-697 301-347 (355)
68 PHA03096 p28-like protein; Pro 95.0 0.013 2.8E-07 62.3 2.1 44 650-693 179-230 (284)
69 PF10367 Vps39_2: Vacuolar sor 94.9 0.01 2.2E-07 52.0 1.0 33 647-680 76-108 (109)
70 PHA02862 5L protein; Provision 94.8 0.021 4.5E-07 55.9 2.9 46 649-696 2-52 (156)
71 PHA02825 LAP/PHD finger-like p 94.7 0.03 6.5E-07 55.4 3.8 47 646-696 5-58 (162)
72 PF05883 Baculo_RING: Baculovi 94.7 0.014 3E-07 56.3 1.2 37 648-684 25-67 (134)
73 COG5222 Uncharacterized conser 94.6 0.031 6.8E-07 60.1 3.8 43 649-694 274-318 (427)
74 COG5236 Uncharacterized conser 94.6 0.025 5.3E-07 61.8 3.0 52 643-697 55-108 (493)
75 PF12906 RINGv: RING-variant d 94.4 0.025 5.4E-07 45.1 2.0 40 652-692 1-47 (47)
76 PF14570 zf-RING_4: RING/Ubox 94.0 0.036 7.9E-07 45.1 2.1 44 652-695 1-46 (48)
77 KOG2114 Vacuolar assembly/sort 93.8 0.035 7.7E-07 65.9 2.6 45 647-696 838-882 (933)
78 KOG3268 Predicted E3 ubiquitin 93.8 0.041 9E-07 55.6 2.5 52 646-697 162-228 (234)
79 COG5183 SSM4 Protein involved 93.3 0.065 1.4E-06 63.6 3.5 50 646-696 9-65 (1175)
80 KOG1952 Transcription factor N 92.9 0.066 1.4E-06 63.8 2.8 47 648-694 190-244 (950)
81 KOG1940 Zn-finger protein [Gen 92.3 0.072 1.6E-06 56.7 2.0 45 650-694 159-204 (276)
82 KOG1001 Helicase-like transcri 92.1 0.066 1.4E-06 62.9 1.5 43 650-696 455-499 (674)
83 KOG0826 Predicted E3 ubiquitin 91.5 0.17 3.8E-06 55.0 3.7 49 645-696 296-345 (357)
84 COG5175 MOT2 Transcriptional r 91.4 0.12 2.7E-06 56.5 2.5 49 647-695 12-62 (480)
85 KOG3002 Zn finger protein [Gen 90.8 0.14 3.1E-06 55.0 2.3 45 646-697 45-91 (299)
86 KOG0298 DEAD box-containing he 90.8 0.083 1.8E-06 65.2 0.5 43 649-694 1153-1196(1394)
87 PF03854 zf-P11: P-11 zinc fin 90.7 0.093 2E-06 43.0 0.6 35 667-701 15-50 (50)
88 PF14447 Prok-RING_4: Prokaryo 90.4 0.14 2.9E-06 43.0 1.3 46 648-698 6-51 (55)
89 PF07800 DUF1644: Protein of u 88.9 0.47 1E-05 47.3 3.9 36 649-684 2-47 (162)
90 KOG2932 E3 ubiquitin ligase in 88.8 0.17 3.8E-06 54.8 1.0 45 649-697 90-134 (389)
91 PF08746 zf-RING-like: RING-li 88.7 0.22 4.7E-06 39.3 1.2 41 652-692 1-43 (43)
92 KOG3161 Predicted E3 ubiquitin 88.3 0.17 3.8E-06 59.0 0.7 44 649-695 11-55 (861)
93 KOG0825 PHD Zn-finger protein 86.6 0.36 7.9E-06 57.5 2.0 51 647-697 94-154 (1134)
94 KOG2817 Predicted E3 ubiquitin 86.4 0.49 1.1E-05 52.6 2.8 49 649-697 334-385 (394)
95 KOG1609 Protein involved in mR 86.2 0.41 8.8E-06 49.3 1.9 49 649-697 78-134 (323)
96 PF05290 Baculo_IE-1: Baculovi 85.7 0.68 1.5E-05 45.1 2.9 47 648-697 79-132 (140)
97 COG5220 TFB3 Cdk activating ki 85.3 0.39 8.4E-06 50.8 1.2 47 648-694 9-61 (314)
98 KOG1812 Predicted E3 ubiquitin 85.0 0.37 8.1E-06 53.2 1.0 40 647-686 144-184 (384)
99 KOG0309 Conserved WD40 repeat- 84.4 0.59 1.3E-05 55.7 2.2 25 667-691 1045-1069(1081)
100 KOG3053 Uncharacterized conser 84.1 0.51 1.1E-05 50.2 1.5 52 646-697 17-82 (293)
101 PF10272 Tmpp129: Putative tra 82.6 1.3 2.7E-05 49.1 3.8 27 670-696 311-350 (358)
102 KOG4362 Transcriptional regula 81.6 0.38 8.3E-06 56.6 -0.6 45 649-696 21-68 (684)
103 KOG1100 Predicted E3 ubiquitin 80.1 0.75 1.6E-05 47.1 1.0 42 652-700 161-203 (207)
104 KOG3579 Predicted E3 ubiquitin 76.2 1.2 2.6E-05 48.2 1.1 37 648-687 267-307 (352)
105 KOG3899 Uncharacterized conser 74.0 1.8 3.9E-05 47.0 1.8 27 670-696 325-364 (381)
106 KOG1829 Uncharacterized conser 70.7 1.5 3.3E-05 51.1 0.4 41 649-692 511-556 (580)
107 KOG1815 Predicted E3 ubiquitin 70.5 2.6 5.6E-05 47.2 2.1 39 646-686 67-105 (444)
108 PF14446 Prok-RING_1: Prokaryo 70.0 4.9 0.00011 33.8 3.1 44 648-695 4-50 (54)
109 KOG3005 GIY-YIG type nuclease 68.9 2.6 5.7E-05 45.1 1.6 48 649-696 182-242 (276)
110 KOG2066 Vacuolar assembly/sort 68.9 1.9 4.2E-05 51.6 0.7 45 648-693 783-831 (846)
111 KOG2068 MOT2 transcription fac 67.7 3.9 8.5E-05 44.9 2.6 51 649-700 249-301 (327)
112 KOG0802 E3 ubiquitin ligase [P 65.8 2.8 6E-05 48.1 1.1 44 647-697 477-520 (543)
113 KOG0269 WD40 repeat-containing 63.3 5.3 0.00011 48.0 2.8 40 651-691 781-820 (839)
114 PF02891 zf-MIZ: MIZ/SP-RING z 60.1 7.8 0.00017 31.5 2.4 43 650-695 3-50 (50)
115 KOG4718 Non-SMC (structural ma 58.7 4.5 9.7E-05 42.3 1.0 44 648-693 180-223 (235)
116 KOG3039 Uncharacterized conser 58.5 7.9 0.00017 41.5 2.8 36 646-684 40-75 (303)
117 COG5109 Uncharacterized conser 57.9 6.9 0.00015 43.1 2.3 46 649-694 336-384 (396)
118 KOG0824 Predicted E3 ubiquitin 57.9 3.5 7.6E-05 44.9 0.1 51 646-699 102-153 (324)
119 KOG1812 Predicted E3 ubiquitin 57.5 5.1 0.00011 44.5 1.3 43 650-693 307-352 (384)
120 PF13901 DUF4206: Domain of un 56.2 7.7 0.00017 39.4 2.2 41 649-694 152-197 (202)
121 smart00249 PHD PHD zinc finger 49.9 9.7 0.00021 27.9 1.4 32 651-682 1-32 (47)
122 smart00132 LIM Zinc-binding do 48.1 16 0.00035 26.1 2.2 38 651-697 1-38 (39)
123 PF06906 DUF1272: Protein of u 42.4 34 0.00074 29.3 3.6 47 651-699 7-54 (57)
124 KOG3113 Uncharacterized conser 41.8 26 0.00055 37.9 3.4 48 649-698 111-159 (293)
125 KOG4185 Predicted E3 ubiquitin 41.6 5.1 0.00011 41.8 -1.7 47 649-695 207-265 (296)
126 KOG0956 PHD finger protein AF1 39.8 9.3 0.0002 45.7 -0.1 48 649-696 117-181 (900)
127 KOG2169 Zn-finger transcriptio 39.6 35 0.00075 40.5 4.4 44 649-696 306-355 (636)
128 KOG2807 RNA polymerase II tran 38.6 21 0.00046 39.6 2.3 47 649-695 330-376 (378)
129 PF05605 zf-Di19: Drought indu 37.9 11 0.00023 30.5 -0.0 38 649-696 2-41 (54)
130 KOG3842 Adaptor protein Pellin 35.5 31 0.00068 38.3 3.0 51 646-696 338-413 (429)
131 PF04710 Pellino: Pellino; In 35.0 13 0.00028 42.1 0.0 28 665-695 304-337 (416)
132 KOG2071 mRNA cleavage and poly 33.9 18 0.0004 42.5 1.0 37 647-683 511-557 (579)
133 PF00628 PHD: PHD-finger; Int 33.6 18 0.00039 28.2 0.6 44 651-694 1-50 (51)
134 PF01363 FYVE: FYVE zinc finge 28.5 21 0.00046 29.6 0.3 37 647-683 7-44 (69)
135 KOG1356 Putative transcription 27.3 23 0.0005 43.3 0.4 37 646-683 226-262 (889)
136 PLN02189 cellulose synthase 26.5 57 0.0012 41.0 3.5 49 648-696 33-86 (1040)
137 PF06844 DUF1244: Protein of u 26.1 39 0.00085 29.8 1.5 12 673-684 11-22 (68)
138 PF00412 LIM: LIM domain; Int 25.7 33 0.00072 27.0 0.9 38 652-698 1-38 (58)
139 KOG1245 Chromatin remodeling c 25.5 25 0.00054 45.4 0.2 54 643-696 1102-1159(1404)
140 smart00064 FYVE Protein presen 25.4 61 0.0013 26.8 2.4 38 647-684 8-46 (68)
141 PF13717 zinc_ribbon_4: zinc-r 25.3 34 0.00074 26.1 0.9 25 651-675 4-36 (36)
142 PF04710 Pellino: Pellino; In 25.0 24 0.00052 40.0 0.0 50 648-697 327-401 (416)
143 KOG1729 FYVE finger containing 24.9 14 0.00029 40.1 -1.9 37 649-685 214-250 (288)
144 PLN02436 cellulose synthase A 24.5 69 0.0015 40.5 3.6 49 648-696 35-88 (1094)
145 KOG3726 Uncharacterized conser 24.2 37 0.00081 40.8 1.3 43 649-694 654-697 (717)
146 PF04216 FdhE: Protein involve 21.5 7.9 0.00017 40.9 -4.4 50 647-696 170-221 (290)
147 PF10235 Cript: Microtubule-as 20.2 58 0.0013 30.1 1.4 38 649-698 44-81 (90)
148 PF02318 FYVE_2: FYVE-type zin 20.2 57 0.0012 30.4 1.5 46 648-694 53-102 (118)
149 cd00065 FYVE FYVE domain; Zinc 20.1 70 0.0015 25.4 1.8 36 649-684 2-38 (57)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.2e-14 Score=152.52 Aligned_cols=69 Identities=35% Similarity=0.833 Sum_probs=56.6
Q ss_pred HHHHhhccccccCCCCCC-CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCC-CCCCCCCccc
Q 047787 630 EAILANLTVQRYGSESPT-NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQ-CPICKMTGLA 698 (701)
Q Consensus 630 eeIiksL~~~Kyssesse-edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnS-CPICRkeILp 698 (701)
+..++.++..+|...... ..+.|+||+|+|++++++++|||+|.||..||++||.+..+ ||+||+.+.+
T Consensus 209 k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 209 KRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred HHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 344577777888743332 22599999999999999999999999999999999998755 9999998765
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.38 E-value=1.3e-13 Score=105.32 Aligned_cols=44 Identities=55% Similarity=1.287 Sum_probs=40.5
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR 693 (701)
+.|+||+++|..++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.9e-11 Score=125.69 Aligned_cols=50 Identities=32% Similarity=0.910 Sum_probs=47.0
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
.-+|+|||++|...++++.|||.|.||..||.+|+. .++.||+||+++.+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 468999999999999999999999999999999999 88999999999865
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.09 E-value=7.4e-11 Score=100.27 Aligned_cols=47 Identities=40% Similarity=0.936 Sum_probs=37.7
Q ss_pred CCCCccccccccccCC----------CceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787 647 TNNGSCCICQEKYADG----------ENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693 (701)
Q Consensus 647 eedeeCpICLEEFedg----------E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR 693 (701)
..++.|+||++.|.+. ..+...+|+|.||..||.+||+.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3456699999999443 2344559999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.03 E-value=2e-10 Score=117.43 Aligned_cols=70 Identities=29% Similarity=0.591 Sum_probs=50.4
Q ss_pred HHHHHhhccccccC---CCCCCCCCccccccccccCCCc----eee-eCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 629 EEAILANLTVQRYG---SESPTNNGSCCICQEKYADGEN----LGK-LDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 629 EeeIiksL~~~Kys---sesseedeeCpICLEEFedgE~----Lr~-LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.+.+++.++..... ......+.+|+||++.+.+++. +.. ++|+|.||..||.+|+..+.+||+||..+..
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 34455555554332 1123456899999999876541 233 4899999999999999999999999997653
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.6e-11 Score=126.05 Aligned_cols=52 Identities=33% Similarity=0.926 Sum_probs=43.6
Q ss_pred CCCCCcccccccc-ccCCC---------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEK-YADGE---------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEE-FedgE---------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
...+..|.||||+ |+.+. +..+|||||++|.+|++.|++++.+||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4567899999999 55441 2358999999999999999999999999999843
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=9.6e-10 Score=114.61 Aligned_cols=51 Identities=29% Similarity=0.737 Sum_probs=45.5
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.......|.||+|....+. .+||||+||+.||..|+..+..||+||.+..+
T Consensus 235 i~~a~~kC~LCLe~~~~pS---aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS---ATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCCCCC---cCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 3455689999999988777 89999999999999999999999999998765
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.82 E-value=3.5e-09 Score=77.50 Aligned_cols=44 Identities=43% Similarity=1.007 Sum_probs=36.5
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCc
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTG 696 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeI 696 (701)
.|+||++.+. +.+..++|+|.||..|++.|+.. ...||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 33345579999999999999997 77899999864
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.80 E-value=3.6e-09 Score=105.52 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=40.3
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----------------CCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----------------KNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----------------KnSCPICRkeIL 697 (701)
..+..|+||++.+.++. .++|||.||+.||.+|+.. +..||+||..+.
T Consensus 16 ~~~~~CpICld~~~dPV---vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDPV---VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCcE---EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 34678999999988775 7899999999999999862 246999999874
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.9e-09 Score=108.21 Aligned_cols=49 Identities=33% Similarity=0.624 Sum_probs=41.6
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRkeIL 697 (701)
......|.||+|.-+++. .+.|||.||+.||.+||. .+..||+||..+-
T Consensus 44 ~~~~FdCNICLd~akdPV---vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPV---VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCCE---EeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 455778999999988877 789999999999999998 3456999998763
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.9e-09 Score=104.05 Aligned_cols=52 Identities=29% Similarity=0.597 Sum_probs=44.2
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.+....|+|||+.|.+... ..++|||+||..||+..|+....||+|++.|-.
T Consensus 128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3456889999999987653 357999999999999999999999999986643
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-09 Score=119.41 Aligned_cols=52 Identities=35% Similarity=0.903 Sum_probs=45.5
Q ss_pred CCCCCccccccccccCCCc--eeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGEN--LGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~--Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
...++.|+||+|++..+.+ ..+|+|+|+||..|++.|++++.+||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3457899999999998754 568999999999999999999999999999543
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.73 E-value=5e-09 Score=82.34 Aligned_cols=46 Identities=39% Similarity=0.786 Sum_probs=39.0
Q ss_pred CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeIL 697 (701)
+..|.||++.+.+ +..+||||. ||..|+.+|+..+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998654 457899999 999999999999999999999874
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=7.7e-09 Score=77.69 Aligned_cols=39 Identities=36% Similarity=0.993 Sum_probs=33.4
Q ss_pred cccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCC
Q 047787 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPIC 692 (701)
|+||++.+.+. +..++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998874 3478999999999999999998899998
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.62 E-value=3.2e-08 Score=79.49 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=40.3
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
..|+||++.+.++. .++|||+|++.||.+|+..+..||+|+..+
T Consensus 2 ~~Cpi~~~~~~~Pv---~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDPV---ILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCCE---ECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 46999999998875 789999999999999999988999999876
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.58 E-value=3e-08 Score=100.93 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=39.4
Q ss_pred CCCCccccccccccCC-----Cceeee-CCCCcccHHHHHHHHhcC------CCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADG-----ENLGKL-DCGHDFHPNCIKQWLVRK------NQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedg-----E~Lr~L-PCGHiFH~dCI~qWL~rK------nSCPICRkeIL 697 (701)
..+.+|+||+|...+. ...+.| +|+|.||..||++|...+ ..||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568899999987443 123455 899999999999999853 45999998653
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.58 E-value=2.6e-08 Score=77.02 Aligned_cols=38 Identities=34% Similarity=0.887 Sum_probs=30.6
Q ss_pred cccccccccCCCceeeeCCCCcccHHHHHHHHhcC----CCCCCC
Q 047787 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK----NQCPIC 692 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK----nSCPIC 692 (701)
|+||++.|.++. .|+|||.||..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~Pv---~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV---SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE---E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcc---ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999998 89999999999999999843 369998
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.53 E-value=5.8e-08 Score=74.96 Aligned_cols=44 Identities=36% Similarity=0.846 Sum_probs=38.4
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
.|.||++.|.+......|+|||+||..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966666778899999999999999866678999985
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.53 E-value=5.3e-08 Score=86.33 Aligned_cols=51 Identities=35% Similarity=0.789 Sum_probs=39.9
Q ss_pred CCCCccccccccccCCC----------ceeeeCCCCcccHHHHHHHHhc---CCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGE----------NLGKLDCGHDFHPNCIKQWLVR---KNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE----------~Lr~LPCGHiFH~dCI~qWL~r---KnSCPICRkeIL 697 (701)
..++.|.||+..|...- .+..-.|+|.||..||.+||.. +..||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34889999999997421 2333379999999999999994 467999999754
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=6.1e-08 Score=105.61 Aligned_cols=49 Identities=24% Similarity=0.665 Sum_probs=43.3
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.....|+||++.|..+. .++|+|.||..||..||.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~Pv---itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPV---LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCcc---CCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45678999999998776 78999999999999999988899999997643
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=9.1e-08 Score=67.64 Aligned_cols=38 Identities=47% Similarity=1.145 Sum_probs=32.5
Q ss_pred cccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCC
Q 047787 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPIC 692 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPIC 692 (701)
|+||++.. .....++|+|.||..||+.|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3455889999999999999998 66779998
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.49 E-value=6.2e-08 Score=72.61 Aligned_cols=39 Identities=41% Similarity=1.080 Sum_probs=34.1
Q ss_pred cccccccccCCCceeeeCCCCcccHHHHHHHHh--cCCCCCCC
Q 047787 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLV--RKNQCPIC 692 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~--rKnSCPIC 692 (701)
|+||++.+.... ..++|+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987765 5679999999999999999 55569998
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.3e-07 Score=96.20 Aligned_cols=50 Identities=26% Similarity=0.667 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHH-HHhcCCC-CCCCCCCcccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQ-WLVRKNQ-CPICKMTGLAR 699 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~q-WL~rKnS-CPICRkeILpt 699 (701)
..+..|.||++...... .++|||+||..||.. |-.++.. ||+||....++
T Consensus 213 ~~d~kC~lC~e~~~~ps---~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPS---CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcc---cccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 56889999999987776 899999999999999 8887776 99999987764
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.5e-07 Score=100.71 Aligned_cols=47 Identities=34% Similarity=0.627 Sum_probs=40.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-----CCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-----NQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-----nSCPICRkeILp 698 (701)
+..|+||++....+. .+.|||+||..||.++|... ..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 788999999987776 66799999999999999844 359999998765
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.4e-07 Score=85.66 Aligned_cols=45 Identities=29% Similarity=0.716 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
.+...|+||++.|..+ ..|+|+|.||..||..|+.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999999 48899999999999999996667999994
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.7e-07 Score=93.82 Aligned_cols=52 Identities=33% Similarity=0.754 Sum_probs=44.2
Q ss_pred CCCCCccccccccccCCC-------ceeeeCCCCcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGE-------NLGKLDCGHDFHPNCIKQWLV--RKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE-------~Lr~LPCGHiFH~dCI~qWL~--rKnSCPICRkeIL 697 (701)
...+..|+||-..+...+ ++.+|.|+|+||..||+-|.. +|.+||.||..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 456788999998886665 678999999999999999986 7889999998764
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.14 E-value=7.6e-07 Score=95.19 Aligned_cols=47 Identities=34% Similarity=0.632 Sum_probs=42.8
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.-..|-||.|.|..+. ++||+|.||.-||+.+|..+..||.|+.++-
T Consensus 22 ~lLRC~IC~eyf~ip~---itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPM---ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhcCce---eccccchHHHHHHHHHhccCCCCCceecccc
Confidence 4467999999999987 8899999999999999999999999998764
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.13 E-value=1.8e-06 Score=76.22 Aligned_cols=53 Identities=28% Similarity=0.592 Sum_probs=40.2
Q ss_pred CCCCCCccccccccccCC-----------Cc--eeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 645 SPTNNGSCCICQEKYADG-----------EN--LGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 645 sseedeeCpICLEEFedg-----------E~--Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.+...+.|.||...|.+. ++ +..-.|.|.||..||.+||..++.||+||++..
T Consensus 16 wdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 16 WDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 344467888888777542 21 222369999999999999999999999998753
No 29
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=7.5e-07 Score=81.74 Aligned_cols=54 Identities=30% Similarity=0.603 Sum_probs=41.7
Q ss_pred CCCCCCCCccccccccccC-------------CC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 643 SESPTNNGSCCICQEKYAD-------------GE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 643 sesseedeeCpICLEEFed-------------gE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
...+...+.|+||...+.+ .+ .+.--.|.|.||..||.+||+.++.||+|.++-
T Consensus 40 WaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 40 WAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4566778899999866543 11 122227999999999999999999999998864
No 30
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.4e-06 Score=96.67 Aligned_cols=52 Identities=27% Similarity=0.601 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCCc--------------eeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGEN--------------LGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~--------------Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
.....|+|||.++..-.. ...+||.|+||..|+.+|+. .|-.||+||.++.+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345689999988754211 12349999999999999999 67799999998764
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.06 E-value=2.6e-06 Score=66.78 Aligned_cols=38 Identities=37% Similarity=0.870 Sum_probs=22.9
Q ss_pred cccccccccCCCc-eeeeCCCCcccHHHHHHHHhcC----CCCC
Q 047787 652 CCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLVRK----NQCP 690 (701)
Q Consensus 652 CpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~rK----nSCP 690 (701)
|+||.| |...+. -..|+|||+||++||.+|+... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 866443 3578999999999999999843 3576
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.02 E-value=2.6e-06 Score=72.32 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=38.5
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp 698 (701)
+...|+||.+-+.++. +++|||+|.+.||.+||.. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dPV---i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPV---ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEE---EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCce---eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 3567999999999998 8999999999999999998 8899999987654
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.6e-06 Score=75.94 Aligned_cols=52 Identities=35% Similarity=0.742 Sum_probs=39.9
Q ss_pred CCCCCCccccccccccCCCceeee----------CCCCcccHHHHHHHHhc---CCCCCCCCCCc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKL----------DCGHDFHPNCIKQWLVR---KNQCPICKMTG 696 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~L----------PCGHiFH~dCI~qWL~r---KnSCPICRkeI 696 (701)
....++.|.||...|...-.-.++ -|.|.||..||.+||.. +..||+||++.
T Consensus 16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 345667999999999764322223 49999999999999984 34699999875
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.97 E-value=1.9e-06 Score=100.71 Aligned_cols=53 Identities=23% Similarity=0.669 Sum_probs=40.3
Q ss_pred CCCCCCCccccccccccCCC----ceeeeCCCCcccHHHHHHHHhc--CCCCCCCCCCc
Q 047787 644 ESPTNNGSCCICQEKYADGE----NLGKLDCGHDFHPNCIKQWLVR--KNQCPICKMTG 696 (701)
Q Consensus 644 esseedeeCpICLEEFedgE----~Lr~LPCGHiFH~dCI~qWL~r--KnSCPICRkeI 696 (701)
......++|+||+..+..-+ .-++-.|.|.||..||.+|++. ++.||+||.++
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 44567899999998875222 1123359999999999999994 56799999875
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.95 E-value=3.7e-06 Score=88.64 Aligned_cols=46 Identities=28% Similarity=0.655 Sum_probs=41.7
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRke 695 (701)
+....|-||-+.|..+. .++|||.||.-||+..|..+..||+||.+
T Consensus 23 Ds~lrC~IC~~~i~ip~---~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 23 DSMLRCRICDCRISIPC---ETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hhHHHhhhhhheeecce---ecccccchhHHHHHHHhcCCCCCcccccc
Confidence 34567999999998887 78999999999999999999999999985
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.92 E-value=8.4e-06 Score=65.19 Aligned_cols=42 Identities=29% Similarity=0.763 Sum_probs=32.6
Q ss_pred ccccccccccCCCceeeeCCC-----CcccHHHHHHHHhcC--CCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCG-----HDFHPNCIKQWLVRK--NQCPICK 693 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCG-----HiFH~dCI~qWL~rK--nSCPICR 693 (701)
.|.||++.. +++....+||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999943 34444477985 899999999999744 4899996
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.91 E-value=2.5e-06 Score=72.53 Aligned_cols=51 Identities=25% Similarity=0.688 Sum_probs=24.6
Q ss_pred CCccccccccccCCCceeee-----CCCCcccHHHHHHHHhc---C--------CCCCCCCCCcccc
Q 047787 649 NGSCCICQEKYADGENLGKL-----DCGHDFHPNCIKQWLVR---K--------NQCPICKMTGLAR 699 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L-----PCGHiFH~dCI~qWL~r---K--------nSCPICRkeILpt 699 (701)
+..|.||+..+.+...+-.+ .|++.||..||.+||.. . ..||.|+++|.-+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 46799999987633322111 69999999999999982 1 1399999987543
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.7e-05 Score=85.36 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
+..++|.|||.+..+-. .|||-|. .|..|.+...-+.+.||+||+.+...|
T Consensus 288 ~~gkeCVIClse~rdt~---vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTV---VLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred cCCCeeEEEecCCcceE---EecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 44678999999865544 8999997 899999998889999999999987754
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.54 E-value=1.8e-05 Score=91.61 Aligned_cols=52 Identities=17% Similarity=0.345 Sum_probs=45.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.....|+||+..|.+.......+|+|+||..||..|-+.-.+||+||+++..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3457899999999888766677999999999999999999999999997654
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.6e-05 Score=83.03 Aligned_cols=50 Identities=32% Similarity=0.923 Sum_probs=39.6
Q ss_pred CCCCccccccccccCCC----ceeee-CCCCcccHHHHHHHHh--c-----CCCCCCCCCCc
Q 047787 647 TNNGSCCICQEKYADGE----NLGKL-DCGHDFHPNCIKQWLV--R-----KNQCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFedgE----~Lr~L-PCGHiFH~dCI~qWL~--r-----KnSCPICRkeI 696 (701)
..+..|.|||+...+.. ..++| +|.|.||..||+.|-. + ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45788999999987654 23455 5999999999999984 4 46799999854
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=2.6e-05 Score=84.01 Aligned_cols=51 Identities=25% Similarity=0.501 Sum_probs=41.1
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCcccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLAR 699 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILpt 699 (701)
.....|+||++-++..- ....|.|.||.+||..-|+ ..+.||.||+.+.++
T Consensus 41 ~~~v~c~icl~llk~tm--ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTM--TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 34578999999876543 2337999999999999988 567899999988764
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=6.9e-05 Score=86.75 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=40.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
...|+.|-.-+.+.. ++.|+|.||..||..-+. +...||.|.+.+-+
T Consensus 643 ~LkCs~Cn~R~Kd~v---I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAV---ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhhHH---HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 468999998877666 789999999999999998 77889999886544
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.16 E-value=0.00011 Score=78.15 Aligned_cols=55 Identities=27% Similarity=0.670 Sum_probs=45.9
Q ss_pred CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-----------------------CCCCCCCCCCcc
Q 047787 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-----------------------KNQCPICKMTGL 697 (701)
Q Consensus 643 sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-----------------------KnSCPICRkeIL 697 (701)
.+.......|.||+.-|.+++.+.+++|-|.||..|+-++|.. +..||+||..|.
T Consensus 109 T~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 109 TENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred ccCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4555677899999999999999999999999999999888751 125999998764
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.10 E-value=0.00011 Score=62.67 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=23.6
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
..|.+|.+.+.++. ....|.|+||..||..-+. ..||+|+.++-.
T Consensus 8 LrCs~C~~~l~~pv--~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 8 LRCSICFDILKEPV--CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp TS-SSS-S--SS-B-----SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred cCCcHHHHHhcCCc--eeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 56999999988876 2248999999999988554 349999998643
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00018 Score=60.08 Aligned_cols=47 Identities=28% Similarity=0.528 Sum_probs=37.6
Q ss_pred CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
.++|.||+|...+.. .-.|||. .|.+|-.+.++ .+..||+||.++..
T Consensus 7 ~dECTICye~pvdsV---lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSV---LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHH---HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 378999999866654 4489997 89999776666 78899999998643
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00037 Score=76.68 Aligned_cols=48 Identities=25% Similarity=0.712 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
..+..|.||+..+..+. .+||||.||..||.+-|.+...||.||..+.
T Consensus 82 ~sef~c~vc~~~l~~pv---~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPV---VTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCCc---cccccccccHHHHHHHhccCCCCcccccccc
Confidence 55788999999998887 7799999999999998888889999999875
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.98 E-value=0.0003 Score=77.96 Aligned_cols=49 Identities=27% Similarity=0.798 Sum_probs=38.6
Q ss_pred CCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.+.-+|+||+|-+..... +..+.|.|.||-.|+..|. ..+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 445689999999866542 3455899999999999994 457999998655
No 48
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.96 E-value=0.00046 Score=83.89 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=43.0
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC----------CCCCCCCCcc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN----------QCPICKMTGL 697 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn----------SCPICRkeIL 697 (701)
..+.++.|.||+-+--.......|.|+|+||..|.+.-|+... .||+|+.++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4566789999998876666677899999999999998887543 5999998763
No 49
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00022 Score=75.67 Aligned_cols=43 Identities=35% Similarity=0.716 Sum_probs=35.0
Q ss_pred CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...|.|||+...+.. .|+|||. -|.+|-+.. +.|||||+.+..
T Consensus 300 ~~LC~ICmDaP~DCv---fLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCV---FLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceE---EeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 678999999877766 8999995 688887554 589999987654
No 50
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00096 Score=72.46 Aligned_cols=50 Identities=26% Similarity=0.489 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
..++..|+||+..-.... ..||+|.-|+.||.+.|+..+.|=.||+++..
T Consensus 419 ~sEd~lCpICyA~pi~Av---f~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAV---FAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhh---ccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467889999987654444 78999999999999999999999999998764
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.63 E-value=0.0009 Score=73.21 Aligned_cols=51 Identities=27% Similarity=0.604 Sum_probs=43.8
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...+..|+||+..+.++... +.|||.||..||..|+..+..||.|+..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccch
Confidence 35568899999999988722 5999999999999999999999999887643
No 52
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.62 E-value=0.00053 Score=73.59 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
.....|.+|...|.+... +..|-|.||+.||...|...+.||.|...+..+
T Consensus 13 n~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 456789999999988762 348999999999999999999999999876543
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.60 E-value=0.00077 Score=74.05 Aligned_cols=47 Identities=26% Similarity=0.658 Sum_probs=37.6
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--CCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--KNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--KnSCPICRkeILp 698 (701)
-+.|-||-|. ..++.+-||||..|..|+-.|-.. ..+||.||.+|-.
T Consensus 369 FeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 3579999886 234556799999999999999853 5689999998754
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0018 Score=68.45 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=41.2
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV--RKNQCPICKMTGL 697 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~--rKnSCPICRkeIL 697 (701)
....+.+|++|.+..+.+. ...+|+|+||..||..-+. -..+||.|..++.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~--~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPH--VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCe--eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3455789999999988776 2457999999999998776 3468999988765
No 55
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.41 E-value=0.0011 Score=72.87 Aligned_cols=46 Identities=33% Similarity=0.719 Sum_probs=38.3
Q ss_pred CCccccccccccCC-CceeeeCCCCcccHHHHHHHHhcC--CCCCCCCC
Q 047787 649 NGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLVRK--NQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~rK--nSCPICRk 694 (701)
...|..|-|.|-.. +.+-.|||.|+||..|+.+.|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45799999988654 457788999999999999999855 46999994
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.25 E-value=0.0017 Score=53.69 Aligned_cols=42 Identities=29% Similarity=0.639 Sum_probs=28.5
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--CCCCCC
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--KNQCPI 691 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--KnSCPI 691 (701)
....|+|.+..|+++. ....|+|+|-++.|.+||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~PV--~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPV--KSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEE--EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCc--CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3578999999998775 45699999999999999943 445998
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.18 E-value=0.0019 Score=65.89 Aligned_cols=47 Identities=23% Similarity=0.602 Sum_probs=41.4
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...|.||.++|+.+. .+.|||.||..|...-+.....|-+|-+....
T Consensus 196 PF~C~iCKkdy~spv---vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPV---VTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchh---hhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 357999999999988 78999999999999988888999999876543
No 58
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0046 Score=68.33 Aligned_cols=47 Identities=30% Similarity=0.578 Sum_probs=39.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--------CCCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--------KNQCPICKMT 695 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--------KnSCPICRke 695 (701)
...|.||+++....+....|||+|+||+.|++.++.. .-.||-|+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4679999999988788889999999999999999972 2358877653
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0061 Score=63.20 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=43.2
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc--------CCCCCCCCCCccccC
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR--------KNQCPICKMTGLARI 700 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r--------KnSCPICRkeILptL 700 (701)
-.-.|..|--.+..++.+ +|.|-|.||.+|+.+|-.. ...||.|..+|++.+
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 346799999999988854 7899999999999999872 235999999998864
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.0037 Score=66.62 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=42.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
...|-||..+|..+. .+.|+|.||..|...-+.....|.+|-+.+...
T Consensus 241 Pf~c~icr~~f~~pV---vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPV---VTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred Cccccccccccccch---hhcCCceeehhhhccccccCCcceecccccccc
Confidence 456999999999998 889999999999999888889999998876543
No 61
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.0037 Score=74.09 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=30.6
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV 684 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~ 684 (701)
..+..+.|.+|...+-.. .....||||.||++||.+-..
T Consensus 813 v~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 446678999999887655 344569999999999988755
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.47 E-value=0.0063 Score=69.06 Aligned_cols=49 Identities=24% Similarity=0.634 Sum_probs=38.7
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-----cCCCCCCCCCCc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-----RKNQCPICKMTG 696 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRkeI 696 (701)
.......|-+|.+.-++.. ...|.|.||+-||++++. ..-+||+|-..+
T Consensus 532 enk~~~~C~lc~d~aed~i---~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYI---ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cccCceeecccCChhhhhH---hhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3445678999999866554 678999999999999987 234799998754
No 63
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.27 E-value=0.018 Score=59.65 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=41.3
Q ss_pred CCCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
......|||+..+|........| +|||+|...||++. .....||+|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence 45667899999999766666666 99999999999997 33567999988754
No 64
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.0016 Score=71.40 Aligned_cols=50 Identities=28% Similarity=0.609 Sum_probs=44.1
Q ss_pred CCCccccccccccCC-CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
-...|.||.+.|+.. +++..+-|||.||.+||.+||..+..||.|+.++.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 356899999999887 66777899999999999999999999999998764
No 65
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.0073 Score=60.06 Aligned_cols=30 Identities=30% Similarity=0.784 Sum_probs=27.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccH
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHP 676 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~ 676 (701)
++..+|.||+|++..++.+.+|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 456789999999999999999999999996
No 66
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.018 Score=60.55 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
....|+||.+.+........| ||||+|+.+|+.+.+.....||+|-.++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 346799999999988877777 99999999999999999999999987754
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.012 Score=64.11 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=34.3
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.......|.||.++..... .+||||.-| |..-- +.-.+||+||..+-
T Consensus 301 ~~~~p~lcVVcl~e~~~~~---fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAV---FVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCcccee---eecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 3455678999999987755 889999866 65433 23345999998764
No 68
>PHA03096 p28-like protein; Provisional
Probab=94.97 E-value=0.013 Score=62.30 Aligned_cols=44 Identities=30% Similarity=0.580 Sum_probs=32.5
Q ss_pred CccccccccccCCC----ceeee-CCCCcccHHHHHHHHhcC---CCCCCCC
Q 047787 650 GSCCICQEKYADGE----NLGKL-DCGHDFHPNCIKQWLVRK---NQCPICK 693 (701)
Q Consensus 650 eeCpICLEEFedgE----~Lr~L-PCGHiFH~dCI~qWL~rK---nSCPICR 693 (701)
..|.||++...... ..+.| .|.|.||..||+.|...+ .+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 67999999886542 34456 799999999999998732 3454444
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.94 E-value=0.01 Score=51.96 Aligned_cols=33 Identities=30% Similarity=0.728 Sum_probs=27.2
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHH
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIK 680 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~ 680 (701)
.....|.+|...+... .....||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 4567799999998774 45567999999999985
No 70
>PHA02862 5L protein; Provisional
Probab=94.82 E-value=0.021 Score=55.91 Aligned_cols=46 Identities=24% Similarity=0.657 Sum_probs=32.6
Q ss_pred CCccccccccccCCCceeeeCC---CCcccHHHHHHHHh--cCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLDC---GHDFHPNCIKQWLV--RKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPC---GHiFH~dCI~qWL~--rKnSCPICRkeI 696 (701)
.+.|-||+++-.+. +.--.| -..-|.+|+.+|+. ++..|++||.+.
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 46799999985332 211122 24689999999998 556799999875
No 71
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.74 E-value=0.03 Score=55.42 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=34.5
Q ss_pred CCCCCccccccccccCCCceeeeCCCC-----cccHHHHHHHHhcC--CCCCCCCCCc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGH-----DFHPNCIKQWLVRK--NQCPICKMTG 696 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGH-----iFH~dCI~qWL~rK--nSCPICRkeI 696 (701)
...+..|-||+++.. +. .-||.. .-|.+|+.+|+..+ ..|++|+++.
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 456778999998843 22 246654 45999999999844 4699999864
No 72
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.66 E-value=0.014 Score=56.28 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCceeeeCCC------CcccHHHHHHHHh
Q 047787 648 NNGSCCICQEKYADGENLGKLDCG------HDFHPNCIKQWLV 684 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCG------HiFH~dCI~qWL~ 684 (701)
..-+|.||++.+....-+..++|+ |.||.+|+++|-.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 357899999999884555666776 8899999999943
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.61 E-value=0.031 Score=60.08 Aligned_cols=43 Identities=30% Similarity=0.648 Sum_probs=34.9
Q ss_pred CCccccccccccCCCceeee-CCCCcccHHHHHHHHh-cCCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLV-RKNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~-rKnSCPICRk 694 (701)
...|+.|..-+..+. .+ -|+|.||.+||..-|. ....||.|-.
T Consensus 274 ~LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 378999998877776 44 4899999999998887 5567999954
No 74
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.56 E-value=0.025 Score=61.84 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=40.3
Q ss_pred CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHH--hcCCCCCCCCCCcc
Q 047787 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL--VRKNQCPICKMTGL 697 (701)
Q Consensus 643 sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL--~rKnSCPICRkeIL 697 (701)
.+.+++...|.||-+.+.-. ..+||+|..|--|-.+.- -.+..||+||++..
T Consensus 55 ddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34566777899999876543 378999999999986643 37788999999754
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.41 E-value=0.025 Score=45.09 Aligned_cols=40 Identities=33% Similarity=0.835 Sum_probs=27.2
Q ss_pred cccccccccCCCceeeeCCCC-----cccHHHHHHHHh--cCCCCCCC
Q 047787 652 CCICQEKYADGENLGKLDCGH-----DFHPNCIKQWLV--RKNQCPIC 692 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGH-----iFH~dCI~qWL~--rKnSCPIC 692 (701)
|-||++...+...+ +.||.- ..|..||.+|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 78999987766622 457653 689999999998 44679988
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.99 E-value=0.036 Score=45.10 Aligned_cols=44 Identities=23% Similarity=0.671 Sum_probs=23.0
Q ss_pred cccccccccCCC-ceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCC
Q 047787 652 CCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMT 695 (701)
Q Consensus 652 CpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRke 695 (701)
|++|.+++...+ .+.--+|++.+|..|...-+. ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 899999994433 232337899999999988886 57789999986
No 77
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=0.035 Score=65.92 Aligned_cols=45 Identities=22% Similarity=0.608 Sum_probs=35.2
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
.....|.+|--.+..+. ....|||.||..|+. .....||.|+.++
T Consensus 838 ~q~skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 34578999988876664 466899999999987 4556799999743
No 78
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.041 Score=55.64 Aligned_cols=52 Identities=31% Similarity=0.781 Sum_probs=37.1
Q ss_pred CCCCCccccccccccCCC---ce-eeeCCCCcccHHHHHHHHhc-----C------CCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGE---NL-GKLDCGHDFHPNCIKQWLVR-----K------NQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE---~L-r~LPCGHiFH~dCI~qWL~r-----K------nSCPICRkeIL 697 (701)
++....|.||+.+--++. .+ --..||.-||.-|+..||+. . ..||.|-.++.
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 445567999987655543 11 12379999999999999982 1 14999998764
No 79
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.31 E-value=0.065 Score=63.59 Aligned_cols=50 Identities=24% Similarity=0.625 Sum_probs=38.1
Q ss_pred CCCCCccccccccccCCCceeeeCCCC-----cccHHHHHHHHh--cCCCCCCCCCCc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGH-----DFHPNCIKQWLV--RKNQCPICKMTG 696 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGH-----iFH~dCI~qWL~--rKnSCPICRkeI 696 (701)
.+++..|-||..+=..++.+ .-||.. ..|.+|+.+|+. .+..|-+|+.+.
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 45568999999887776633 227764 489999999999 455699998765
No 80
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.88 E-value=0.066 Score=63.77 Aligned_cols=47 Identities=34% Similarity=0.735 Sum_probs=35.6
Q ss_pred CCCccccccccccCCCcee-eeCCCCcccHHHHHHHHhcC-------CCCCCCCC
Q 047787 648 NNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQWLVRK-------NQCPICKM 694 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qWL~rK-------nSCPICRk 694 (701)
...+|.||++.+.....+- .-.|-|+||..||+.|-... ..||.|..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4567999999987765332 22588999999999998732 23999984
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.32 E-value=0.072 Score=56.68 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=38.6
Q ss_pred CccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 650 GSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 650 eeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
..|+||.+.+.... .+..++|||..|..|+.+.....-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999987765 4567799999999999999887788999988
No 82
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.08 E-value=0.066 Score=62.88 Aligned_cols=43 Identities=30% Similarity=0.778 Sum_probs=34.4
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC--CCCCCCCCc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKMTG 696 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPICRkeI 696 (701)
..|.||++ . +.....+|+|.||..|+..-+.... .||+||..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 3 3334789999999999999887432 599999754
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.17 Score=55.03 Aligned_cols=49 Identities=24% Similarity=0.516 Sum_probs=39.9
Q ss_pred CCCCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
...+...|+||+.....+. .| --|-+||..||...+...+.||+-..++
T Consensus 296 l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3455678999999877765 34 5699999999999999999999976554
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.37 E-value=0.12 Score=56.47 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=34.5
Q ss_pred CCCCccccccccccCCCce-eeeCCCCcccHHHHHHHHh-cCCCCCCCCCC
Q 047787 647 TNNGSCCICQEKYADGENL-GKLDCGHDFHPNCIKQWLV-RKNQCPICKMT 695 (701)
Q Consensus 647 eedeeCpICLEEFedgE~L-r~LPCGHiFH~dCI~qWL~-rKnSCPICRke 695 (701)
++++.|+.|+|++...++- .-.+||-..|.-|...--. ....||-||..
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 4455699999999877643 2348898777777654433 34569999974
No 85
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.85 E-value=0.14 Score=54.95 Aligned_cols=45 Identities=22% Similarity=0.507 Sum_probs=36.6
Q ss_pred CCCCCccccccccccCCCceeeeCC--CCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDC--GHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPC--GHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
..+..+|+||.+.+..+. ..| ||+-|..|-. +.++.||.||.++-
T Consensus 45 ~~~lleCPvC~~~l~~Pi----~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPI----FQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccc----eecCCCcEehhhhhh---hhcccCCccccccc
Confidence 345678999999998885 777 7999999975 45788999998864
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.75 E-value=0.083 Score=65.24 Aligned_cols=43 Identities=35% Similarity=0.794 Sum_probs=37.4
Q ss_pred CCcccccccccc-CCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 649 NGSCCICQEKYA-DGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFe-dgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
...|.||.+... .+- +..|||.||..|+..|+..+..||+|+.
T Consensus 1153 ~~~c~ic~dil~~~~~---I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGG---IAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcCC---eeeechhHhhhHHHHHHHHhccCcchhh
Confidence 348999999887 333 6789999999999999999999999984
No 87
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.71 E-value=0.093 Score=43.01 Aligned_cols=35 Identities=31% Similarity=0.716 Sum_probs=24.6
Q ss_pred eeCCC-CcccHHHHHHHHhcCCCCCCCCCCccccCC
Q 047787 667 KLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLARIH 701 (701)
Q Consensus 667 ~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILptLh 701 (701)
...|. |..|..|+...|.....||+|+.++..+|+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 45786 999999999999999999999999988774
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.44 E-value=0.14 Score=42.99 Aligned_cols=46 Identities=30% Similarity=0.573 Sum_probs=33.7
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
....|..|...-..+. .+||||+.|..|..- ++-+-||+|-+++..
T Consensus 6 ~~~~~~~~~~~~~~~~---~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGT---VLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccc---cccccceeeccccCh--hhccCCCCCCCcccC
Confidence 3456777776544444 789999999999754 366779999987754
No 89
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.87 E-value=0.47 Score=47.26 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCccccccccccCCCceeee---------CCCC-cccHHHHHHHHh
Q 047787 649 NGSCCICQEKYADGENLGKL---------DCGH-DFHPNCIKQWLV 684 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L---------PCGH-iFH~dCI~qWL~ 684 (701)
+..|+||||.....+.+... -|+- .-|..||+++-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 56799999987776622211 1332 258899999866
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=0.17 Score=54.82 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=29.7
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.-.|.-|--. ....-+.+||+|+||.+|.+. ...+.||.|-..++
T Consensus 90 VHfCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 3456556333 333345679999999999743 34568999976553
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.65 E-value=0.22 Score=39.28 Aligned_cols=41 Identities=29% Similarity=0.872 Sum_probs=24.3
Q ss_pred cccccccccCCCceeeeCCCCcccHHHHHHHHhcCC--CCCCC
Q 047787 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPIC 692 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPIC 692 (701)
|.+|.+-...++.-....|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888887777322235998999999999998655 69988
No 92
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=0.17 Score=58.97 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=32.5
Q ss_pred CCccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 047787 649 NGSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695 (701)
Q Consensus 649 deeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRke 695 (701)
...|.||+..|.... .-+.|.|||+.|..|+... .+.+|| |++.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 357999988886654 3346789999999999764 345688 7654
No 93
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.65 E-value=0.36 Score=57.50 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=37.6
Q ss_pred CCCCccccccccccCCC-ceeeeC---CCCcccHHHHHHHHh------cCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGE-NLGKLD---CGHDFHPNCIKQWLV------RKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE-~Lr~LP---CGHiFH~dCI~qWL~------rKnSCPICRkeIL 697 (701)
.+...|.||.-++..++ ....+| |+|.||..||..|+. .+-.|++|+..+.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34567888888887743 344555 999999999999987 2345899987654
No 94
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=0.49 Score=52.59 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=39.7
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc---CCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR---KNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r---KnSCPICRkeIL 697 (701)
...|||=.+.-.+...-..|.|||+.+++-|.+.-+. +..||.|=.+..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 4579998888877777779999999999999998773 357999965543
No 95
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.17 E-value=0.41 Score=49.28 Aligned_cols=49 Identities=27% Similarity=0.622 Sum_probs=36.0
Q ss_pred CCccccccccccCCCc-eeeeCCC-----CcccHHHHHHHHh--cCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGEN-LGKLDCG-----HDFHPNCIKQWLV--RKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~-Lr~LPCG-----HiFH~dCI~qWL~--rKnSCPICRkeIL 697 (701)
...|-||.++...... .-..||. +..|..|+..|+. .+..|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999998765432 2244775 4589999999999 5556999988543
No 96
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.65 E-value=0.68 Score=45.12 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=38.4
Q ss_pred CCCccccccccccCCCceeee-C---CCCcccHHHHHHHHhc---CCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKL-D---CGHDFHPNCIKQWLVR---KNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L-P---CGHiFH~dCI~qWL~r---KnSCPICRkeIL 697 (701)
...+|-||.|.-.+.. .| | ||-..|..|.-..++. ...||+||+..-
T Consensus 79 ~lYeCnIC~etS~ee~---FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEER---FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhh---cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 6789999999877766 55 2 8999999999998884 456999998754
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.25 E-value=0.39 Score=50.75 Aligned_cols=47 Identities=23% Similarity=0.592 Sum_probs=36.1
Q ss_pred CCCccccccccccCCCceeee--C-CCCcccHHHHHHHHhcC-CCCC--CCCC
Q 047787 648 NNGSCCICQEKYADGENLGKL--D-CGHDFHPNCIKQWLVRK-NQCP--ICKM 694 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L--P-CGHiFH~dCI~qWL~rK-nSCP--ICRk 694 (701)
.+..|+||..+....-.+..| | |-|..|..|+++-+... ..|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 356899999886665555555 5 99999999999999854 4699 6643
No 98
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.37 Score=53.19 Aligned_cols=40 Identities=30% Similarity=0.659 Sum_probs=30.3
Q ss_pred CCCCccccccccccCC-CceeeeCCCCcccHHHHHHHHhcC
Q 047787 647 TNNGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLVRK 686 (701)
Q Consensus 647 eedeeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~rK 686 (701)
.....|.||+.++... +....+.|+|.||.+|+++.+..+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 3467899999554444 444456899999999999998844
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.37 E-value=0.59 Score=55.65 Aligned_cols=25 Identities=32% Similarity=0.813 Sum_probs=22.8
Q ss_pred eeCCCCcccHHHHHHHHhcCCCCCC
Q 047787 667 KLDCGHDFHPNCIKQWLVRKNQCPI 691 (701)
Q Consensus 667 ~LPCGHiFH~dCI~qWL~rKnSCPI 691 (701)
+..|+|+.|..|.++|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 4579999999999999999999985
No 100
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.11 E-value=0.51 Score=50.23 Aligned_cols=52 Identities=23% Similarity=0.569 Sum_probs=36.1
Q ss_pred CCCCCccccccccccCCCceee-eCCC-----CcccHHHHHHHHhcCC--------CCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGK-LDCG-----HDFHPNCIKQWLVRKN--------QCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~-LPCG-----HiFH~dCI~qWL~rKn--------SCPICRkeIL 697 (701)
.+.+..|=||+..-++.-.... -||- |..|..||..|+..|. +||.|+++..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4456678899987544431111 1663 7899999999997543 4999999754
No 101
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=82.62 E-value=1.3 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.813 Sum_probs=21.1
Q ss_pred CCCcccHHHHHHHHhc-------------CCCCCCCCCCc
Q 047787 670 CGHDFHPNCIKQWLVR-------------KNQCPICKMTG 696 (701)
Q Consensus 670 CGHiFH~dCI~qWL~r-------------KnSCPICRkeI 696 (701)
|--.+|.+|+-+|+.. +-.||+||++.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5567899999999873 23599999863
No 102
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.64 E-value=0.38 Score=56.65 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=37.6
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC---CCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN---QCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn---SCPICRkeI 696 (701)
..+|+||...|.++. .+.|-|.||..|+..-|..++ .||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p~---~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEPS---LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeeccc---hhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 467999999999884 789999999999988777554 599999643
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.12 E-value=0.75 Score=47.08 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=30.9
Q ss_pred cccccccccCCCceeeeCCCC-cccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 652 CCICQEKYADGENLGKLDCGH-DFHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGH-iFH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
|-+|-+. ...+..|||-| .+|..|=.. ...||+|+.......
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~~ 203 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTSSV 203 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhcee
Confidence 8888775 44566779997 489999543 456999998776654
No 104
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.20 E-value=1.2 Score=48.16 Aligned_cols=37 Identities=22% Similarity=0.590 Sum_probs=30.4
Q ss_pred CCCccccccccccCCCceeeeCC----CCcccHHHHHHHHhcCC
Q 047787 648 NNGSCCICQEKYADGENLGKLDC----GHDFHPNCIKQWLVRKN 687 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPC----GHiFH~dCI~qWL~rKn 687 (701)
....|.+|.|-+++.. ...| .|+||..|-++-+++..
T Consensus 267 apLcCTLC~ERLEDTH---FVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH---FVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCc---eeecCCCcccceecccCHHHHHhhc
Confidence 3478999999998887 5556 69999999999998543
No 105
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.01 E-value=1.8 Score=47.01 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCCCCCCCc
Q 047787 670 CGHDFHPNCIKQWLV-------------RKNQCPICKMTG 696 (701)
Q Consensus 670 CGHiFH~dCI~qWL~-------------rKnSCPICRkeI 696 (701)
|-..+|.+|+-+|+. .+-+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667899999999986 345799999864
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=70.72 E-value=1.5 Score=51.10 Aligned_cols=41 Identities=24% Similarity=0.653 Sum_probs=26.3
Q ss_pred CCcccccccc-----ccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCC
Q 047787 649 NGSCCICQEK-----YADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692 (701)
Q Consensus 649 deeCpICLEE-----FedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPIC 692 (701)
...|.||... |+.....++..|+++||++|++. .+.-||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 4568888532 22222344558999999999643 23339999
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.55 E-value=2.6 Score=47.17 Aligned_cols=39 Identities=36% Similarity=0.756 Sum_probs=32.0
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK 686 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK 686 (701)
......|-||.+.+.. .+..+.|+|.||..|+...|..+
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 3456789999999876 45577999999999999988843
No 108
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.98 E-value=4.9 Score=33.81 Aligned_cols=44 Identities=25% Similarity=0.764 Sum_probs=32.4
Q ss_pred CCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCC--CCCC
Q 047787 648 NNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPI--CKMT 695 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPI--CRke 695 (701)
....|.+|-+.|.+++++.+- .||-.||+.|... ...|-+ |...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 356799999999877665555 7999999999644 455655 5543
No 109
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=68.91 E-value=2.6 Score=45.13 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=35.2
Q ss_pred CCccccccccccCCCceeee----CCCCcccHHHHHHHHh---------cCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKL----DCGHDFHPNCIKQWLV---------RKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L----PCGHiFH~dCI~qWL~---------rKnSCPICRkeI 696 (701)
...|-||.+++.+.+..+.+ .|.-++|..|+-.-+. ....||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 35899999999655544333 5888999999998443 234699999854
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.86 E-value=1.9 Score=51.64 Aligned_cols=45 Identities=24% Similarity=0.564 Sum_probs=33.4
Q ss_pred CCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787 648 NNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693 (701)
Q Consensus 648 edeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR 693 (701)
.+..|.-|.+..... +.++.+.|+|.||+.|+.--..+.. |-+|-
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 345799999876532 4677889999999999977666555 66654
No 111
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.73 E-value=3.9 Score=44.86 Aligned_cols=51 Identities=25% Similarity=0.400 Sum_probs=38.8
Q ss_pred CCccccccccccCCCceeee--CCCCcccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 649 NGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
...|+||.+.....+.. .| +|++..|..|+..-......||.||++.....
T Consensus 249 ~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 46899999987444322 34 68888888898888888889999998776543
No 112
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.77 E-value=2.8 Score=48.13 Aligned_cols=44 Identities=27% Similarity=0.762 Sum_probs=36.7
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.....|.||+++. ..+..+|. |..|+.+|+-.+..||+|.+.+.
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 4567899999997 44567888 89999999999999999987543
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.33 E-value=5.3 Score=48.01 Aligned_cols=40 Identities=25% Similarity=0.644 Sum_probs=29.1
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPI 691 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPI 691 (701)
.|++|-..+. +..+-.-.|+|.-|..|+++|+.....||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 5777755432 222323369999999999999998888876
No 114
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=60.13 E-value=7.8 Score=31.45 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHh---c--CCCCCCCCCC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---R--KNQCPICKMT 695 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---r--KnSCPICRke 695 (701)
..|+|....+..+. +-..|.|.-|.+ +..||. + .-.||+|+++
T Consensus 3 L~CPls~~~i~~P~--Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV--RGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEE--EETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCc--cCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888888776654 556899985533 445555 2 2359999874
No 115
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.69 E-value=4.5 Score=42.34 Aligned_cols=44 Identities=30% Similarity=0.725 Sum_probs=36.2
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR 693 (701)
....|.+|.+-...+. ++-.|+-.||..|+...+.....||-|.
T Consensus 180 nlk~Cn~Ch~LvIqg~--rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGI--RCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhheee--ccCcccchhhhHHHHHHhcccCcCCchh
Confidence 4568999998766554 3447889999999999999999999993
No 116
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.46 E-value=7.9 Score=41.46 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV 684 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~ 684 (701)
...-+.|+.|+..+.++. +.+=||+|+.+||.+.+.
T Consensus 40 iK~FdcCsLtLqPc~dPv---it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPV---ITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCc---cCCCCeeeeHHHHHHHHH
Confidence 345578999999999888 889999999999999876
No 117
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.88 E-value=6.9 Score=43.14 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=35.9
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRk 694 (701)
...||+-.+.-.+......|.|||+.-++-+++.-+ ....||.|=.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 457998888777766667889999999999988655 3446999943
No 118
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.87 E-value=3.5 Score=44.95 Aligned_cols=51 Identities=25% Similarity=0.495 Sum_probs=42.3
Q ss_pred CCCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
......|-||+..+..+. +. .|.|.|+..|...|....+.||.||..+.+-
T Consensus 102 ~~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred cCCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 345678999999988776 23 5999999999999999999999999876553
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.55 E-value=5.1 Score=44.51 Aligned_cols=43 Identities=26% Similarity=0.578 Sum_probs=30.4
Q ss_pred CccccccccccCCC---ceeeeCCCCcccHHHHHHHHhcCCCCCCCC
Q 047787 650 GSCCICQEKYADGE---NLGKLDCGHDFHPNCIKQWLVRKNQCPICK 693 (701)
Q Consensus 650 eeCpICLEEFedgE---~Lr~LPCGHiFH~dCI~qWL~rKnSCPICR 693 (701)
..|++|.-.++... .+.. .|||.||..|.-.|......|..|-
T Consensus 307 r~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred CcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCCccccCcc
Confidence 45777766554433 3333 4999999999999988888775553
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=56.19 E-value=7.7 Score=39.39 Aligned_cols=41 Identities=27% Similarity=0.675 Sum_probs=28.0
Q ss_pred CCcccccccc-----ccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 649 NGSCCICQEK-----YADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEE-----FedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
...|-||.++ |......+.-.|+-+||..|.. +..||-|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4678888753 2222333444899999999976 377999954
No 121
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=48.09 E-value=16 Score=26.05 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=26.3
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.|..|.+.+...+.. ...=+..||..| ..|..|+..+.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccC--------CCCcccCCcCc
Confidence 378888887776322 223467899988 57888888763
No 123
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=42.41 E-value=34 Score=29.28 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=31.5
Q ss_pred ccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 651 SCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 651 eCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
.|-.|-.++.... ...+-.=...||.+|....| ++.||.|..+++..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4666777765544 22221122469999999877 78899999887653
No 124
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.84 E-value=26 Score=37.87 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...|+|---++........| +|||+|-..-+++. ....|++|......
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 45799887777766665566 99999999998874 36789999886543
No 125
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.63 E-value=5.1 Score=41.83 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=36.2
Q ss_pred CCccccccccccCC-C--ceeeeC--------CCCcccHHHHHHHHhcCC-CCCCCCCC
Q 047787 649 NGSCCICQEKYADG-E--NLGKLD--------CGHDFHPNCIKQWLVRKN-QCPICKMT 695 (701)
Q Consensus 649 deeCpICLEEFedg-E--~Lr~LP--------CGHiFH~dCI~qWL~rKn-SCPICRke 695 (701)
...|.||...|... . .-+.+. |+|..|..|+..-+.+.. .||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46799999999843 2 223445 999999999999987554 79999864
No 126
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=39.77 E-value=9.3 Score=45.73 Aligned_cols=48 Identities=25% Similarity=0.520 Sum_probs=30.3
Q ss_pred CCccccccccccCCC-c-eeee-----CCCCcccHHHHHHHHh----------cCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGE-N-LGKL-----DCGHDFHPNCIKQWLV----------RKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE-~-Lr~L-----PCGHiFH~dCI~qWL~----------rKnSCPICRkeI 696 (701)
...|.||.|+=.+.. . -.++ .|.-.||..|....=. .-+.|-+|+..+
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 478999999833322 1 1122 5778899999865311 123599998653
No 127
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=39.63 E-value=35 Score=40.51 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----C--CCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----K--NQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----K--nSCPICRkeI 696 (701)
-..|+||..-...+. +...|+|+=|.+- .|+.. + ..||+|.+.+
T Consensus 306 SL~CPl~~~Rm~~P~--r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPA--RGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred EecCCcccceeecCC--cccccccceecch--hhhHHhccCCCeeeCccCCccc
Confidence 346888766554443 2345666444443 23331 1 1499998865
No 128
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=38.65 E-value=21 Score=39.64 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=35.6
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRke 695 (701)
...|-.|.++.......+.-.|.|.||.+|=.---+.-..||-|...
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 44599998888777766677899999999954443455679999753
No 129
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=37.87 E-value=11 Score=30.53 Aligned_cols=38 Identities=18% Similarity=0.547 Sum_probs=21.1
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHh--cCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV--RKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~--rKnSCPICRkeI 696 (701)
...||.|.++|.... +...|...-.. ..-.||+|...+
T Consensus 2 ~f~CP~C~~~~~~~~----------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHH----------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 467999998655433 12233332222 223599997653
No 130
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.50 E-value=31 Score=38.29 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCCCCccccccccccC---------------CC-ceeeeCCCCcccHHHHHHHHhc---------CCCCCCCCCCc
Q 047787 646 PTNNGSCCICQEKYAD---------------GE-NLGKLDCGHDFHPNCIKQWLVR---------KNQCPICKMTG 696 (701)
Q Consensus 646 seedeeCpICLEEFed---------------gE-~Lr~LPCGHiFH~dCI~qWL~r---------KnSCPICRkeI 696 (701)
.....+|++|+..=.. +. .-...||||+--.+-.+-|-.. +..||.|-+.+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 3446789999864211 10 0113389999999999999762 33599998754
No 131
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=34.98 E-value=13 Score=42.07 Aligned_cols=28 Identities=32% Similarity=0.820 Sum_probs=0.0
Q ss_pred eeeeCCCCcccHHHHHHHHh------cCCCCCCCCCC
Q 047787 665 LGKLDCGHDFHPNCIKQWLV------RKNQCPICKMT 695 (701)
Q Consensus 665 Lr~LPCGHiFH~dCI~qWL~------rKnSCPICRke 695 (701)
-.-|.|||++. ...|-. ....||+||+.
T Consensus 304 ~VYl~CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eeeccccceee---ecccccccccccccccCCCcccc
Confidence 34678999876 346754 24579999975
No 132
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=33.86 E-value=18 Score=42.50 Aligned_cols=37 Identities=35% Similarity=0.622 Sum_probs=26.0
Q ss_pred CCCCccccccccccCC----C------ceeeeCCCCcccHHHHHHHH
Q 047787 647 TNNGSCCICQEKYADG----E------NLGKLDCGHDFHPNCIKQWL 683 (701)
Q Consensus 647 eedeeCpICLEEFedg----E------~Lr~LPCGHiFH~dCI~qWL 683 (701)
+....|+||.|.|+.- + ....+.-|-+||..|+..--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 6678899999999651 1 11233368899999987654
No 133
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=33.56 E-value=18 Score=28.23 Aligned_cols=44 Identities=23% Similarity=0.541 Sum_probs=29.9
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHh------cCCCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV------RKNQCPICKM 694 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~------rKnSCPICRk 694 (701)
.|.||...-...+.+.--.|.-.||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889999554455333338999999999876544 2345888753
No 134
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.53 E-value=21 Score=29.63 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=19.0
Q ss_pred CCCCccccccccccCCCceee-eCCCCcccHHHHHHHH
Q 047787 647 TNNGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQWL 683 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~-LPCGHiFH~dCI~qWL 683 (701)
.+...|.+|...|..-..-.. -.||++||..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 456789999999965432112 2799999999986554
No 135
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=27.35 E-value=23 Score=43.34 Aligned_cols=37 Identities=16% Similarity=0.451 Sum_probs=26.1
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHH
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL 683 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL 683 (701)
......|-.|.-..-. ...++-.|+|.||..|++.|.
T Consensus 226 ~g~~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cCcchhhhhhcccccc-eeEEccccCCeeeecchhhcc
Confidence 3445678888765322 133455899999999999995
No 136
>PLN02189 cellulose synthase
Probab=26.53 E-value=57 Score=41.03 Aligned_cols=49 Identities=22% Similarity=0.496 Sum_probs=33.4
Q ss_pred CCCccccccccccC---CCceeee-CCCCcccHHHHHHHHh-cCCCCCCCCCCc
Q 047787 648 NNGSCCICQEKYAD---GENLGKL-DCGHDFHPNCIKQWLV-RKNQCPICKMTG 696 (701)
Q Consensus 648 edeeCpICLEEFed---gE~Lr~L-PCGHiFH~dCI~qWL~-rKnSCPICRkeI 696 (701)
....|.||-+++.. ++..... .|+--.|..|..-=-+ .+..||.||+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 45689999999753 3322222 5888899999843222 456799999864
No 137
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.07 E-value=39 Score=29.81 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=8.9
Q ss_pred cccHHHHHHHHh
Q 047787 673 DFHPNCIKQWLV 684 (701)
Q Consensus 673 iFH~dCI~qWL~ 684 (701)
-||+.||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 138
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.74 E-value=33 Score=27.00 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=20.4
Q ss_pred cccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 652 CCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 652 CpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
|..|...+...+.+ +..-+..||..| ..|-.|++.+..
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTT
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCC
Confidence 55566666544421 124556666666 456666665543
No 139
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=25.49 E-value=25 Score=45.38 Aligned_cols=54 Identities=26% Similarity=0.493 Sum_probs=41.5
Q ss_pred CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCCc
Q 047787 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMTG 696 (701)
Q Consensus 643 sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRkeI 696 (701)
.........|.||.....+...+.+.-|--.||..|++.-+.. ...||-|+.+-
T Consensus 1102 w~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1102 WDRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3445567789999999877665555578888999999998873 34699999764
No 140
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=25.25 E-value=34 Score=26.14 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=17.1
Q ss_pred ccccccccccCCCc--------eeeeCCCCccc
Q 047787 651 SCCICQEKYADGEN--------LGKLDCGHDFH 675 (701)
Q Consensus 651 eCpICLEEFedgE~--------Lr~LPCGHiFH 675 (701)
.|+=|.-.|..++. +....|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888877653 33446788774
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.99 E-value=24 Score=39.99 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCccccccccccC-------------C-C--ceeeeCCCCcccHHHHHHHHhc---------CCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYAD-------------G-E--NLGKLDCGHDFHPNCIKQWLVR---------KNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFed-------------g-E--~Lr~LPCGHiFH~dCI~qWL~r---------KnSCPICRkeIL 697 (701)
...+|++|+..-.. + . .-..-||||+--.++.+-|-.. +..||.|-..+.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 36789999854211 0 0 1123499999999999999761 235999988764
No 143
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=24.93 E-value=14 Score=40.12 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=30.0
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR 685 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r 685 (701)
...|.+|+++|..+.....+.|--+||..|+..|+..
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred ceecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 4489999999987555556666669999999999973
No 144
>PLN02436 cellulose synthase A
Probab=24.47 E-value=69 Score=40.53 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=33.5
Q ss_pred CCCcccccccccc---CCCceeee-CCCCcccHHHHHHHHh-cCCCCCCCCCCc
Q 047787 648 NNGSCCICQEKYA---DGENLGKL-DCGHDFHPNCIKQWLV-RKNQCPICKMTG 696 (701)
Q Consensus 648 edeeCpICLEEFe---dgE~Lr~L-PCGHiFH~dCI~qWL~-rKnSCPICRkeI 696 (701)
....|-||-+++. +++..... .|+--.|..|..-=.+ .+..||.||+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 3468999999963 34432222 6888899999843222 456799999864
No 145
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.23 E-value=37 Score=40.80 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCcccccccccc-CCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 649 NGSCCICQEKYA-DGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFe-dgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
...|-+|+..=. +.+..+.+.|+-.||..| |+-..+.||+|--
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGP 697 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCc
Confidence 467999986533 222344568999999998 5566778999953
No 146
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.48 E-value=7.9 Score=40.88 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCCCccccccccccCCCceeee--CCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 647 TNNGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
.....||||=.......-...- ---|.+|.-|-.+|-.....||.|-.+-
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 3457899998765333210000 0135677788889988888999996543
No 147
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=20.24 E-value=58 Score=30.09 Aligned_cols=38 Identities=26% Similarity=0.622 Sum_probs=28.7
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...|-||...... =||.||..|-.+ +..|.+|-+.++.
T Consensus 44 ~~~C~~CK~~v~q--------~g~~YCq~CAYk----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQ--------PGAKYCQTCAYK----KGICAMCGKKILD 81 (90)
T ss_pred Ccccccccccccc--------CCCccChhhhcc----cCcccccCCeecc
Confidence 4579999776443 357899999654 6899999888754
No 148
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.20 E-value=57 Score=30.41 Aligned_cols=46 Identities=17% Similarity=0.424 Sum_probs=28.5
Q ss_pred CCCccccccccccCC--CceeeeCCCCcccHHHHHHHHhcCC--CCCCCCC
Q 047787 648 NNGSCCICQEKYADG--ENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKM 694 (701)
Q Consensus 648 edeeCpICLEEFedg--E~Lr~LPCGHiFH~dCI~qWL~rKn--SCPICRk 694 (701)
....|.+|...|..- .......|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567899999987433 3344558999999999644 11111 3777754
No 149
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.07 E-value=70 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCccccccccccCCCc-eeeeCCCCcccHHHHHHHHh
Q 047787 649 NGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLV 684 (701)
Q Consensus 649 deeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~ 684 (701)
...|.+|...|..-.. -..-.||++||..|......
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 3579999888866431 12237999999999987655
Done!