Query 047787
Match_columns 701
No_of_seqs 246 out of 1793
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 5.3E-15 1.8E-19 126.5 7.1 76 624-700 14-91 (91)
2 1x4j_A Ring finger protein 38; 99.5 1E-14 3.5E-19 119.6 3.7 65 634-698 7-72 (75)
3 2kiz_A E3 ubiquitin-protein li 99.5 6.7E-14 2.3E-18 112.6 6.1 56 645-700 10-65 (69)
4 2ep4_A Ring finger protein 24; 99.4 9.6E-14 3.3E-18 113.0 5.6 54 646-699 12-65 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.4 1.1E-13 3.7E-18 106.6 4.0 51 647-697 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 1.6E-13 5.5E-18 112.7 4.4 53 646-698 12-64 (78)
7 1v87_A Deltex protein 2; ring- 99.4 7.3E-13 2.5E-17 116.0 7.0 50 648-697 24-93 (114)
8 2ecl_A Ring-box protein 2; RNF 99.3 1.1E-12 3.8E-17 110.3 4.8 53 646-698 12-76 (81)
9 2ecm_A Ring finger and CHY zin 99.3 1.3E-12 4.3E-17 100.4 4.7 51 647-697 3-54 (55)
10 2ea6_A Ring finger protein 4; 99.3 1.2E-12 4.3E-17 103.9 4.0 53 646-698 12-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.4E-12 4.6E-17 104.7 3.6 53 646-698 7-63 (71)
12 2xeu_A Ring finger protein 4; 99.2 3.5E-12 1.2E-16 100.0 3.3 51 648-698 2-56 (64)
13 3dpl_R Ring-box protein 1; ubi 99.2 6E-12 2.1E-16 112.3 5.2 51 646-696 34-99 (106)
14 2d8t_A Dactylidin, ring finger 99.2 3.6E-12 1.2E-16 103.6 2.6 50 646-698 12-61 (71)
15 1chc_A Equine herpes virus-1 r 99.2 5.8E-12 2E-16 100.7 3.3 51 647-699 3-53 (68)
16 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.8E-16 100.9 4.6 49 647-698 13-62 (72)
17 2ct2_A Tripartite motif protei 99.2 1.7E-11 5.7E-16 101.9 5.6 53 645-697 11-67 (88)
18 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.5E-16 102.4 4.8 50 646-698 12-61 (81)
19 2ecn_A Ring finger protein 141 99.1 5.6E-12 1.9E-16 101.6 1.1 49 647-699 13-61 (70)
20 4ayc_A E3 ubiquitin-protein li 99.1 1.2E-11 4.2E-16 112.7 2.9 47 649-698 53-99 (138)
21 2yur_A Retinoblastoma-binding 99.1 2.4E-11 8.3E-16 99.8 4.1 50 646-698 12-64 (74)
22 4a0k_B E3 ubiquitin-protein li 99.1 2.9E-12 9.8E-17 116.8 -1.6 53 644-696 43-110 (117)
23 2ysl_A Tripartite motif-contai 99.1 2.6E-11 8.9E-16 98.0 4.1 50 646-698 17-69 (73)
24 2ecy_A TNF receptor-associated 99.1 4.1E-11 1.4E-15 95.9 5.1 49 647-698 13-62 (66)
25 2ecw_A Tripartite motif-contai 99.1 4.8E-11 1.6E-15 97.9 5.0 49 647-698 17-71 (85)
26 2d8s_A Cellular modulator of i 99.1 4.3E-11 1.5E-15 102.0 4.4 53 645-698 11-70 (80)
27 1t1h_A Gspef-atpub14, armadill 99.1 5.1E-11 1.7E-15 97.8 4.3 48 647-697 6-54 (78)
28 2ecv_A Tripartite motif-contai 99.1 5.9E-11 2E-15 97.3 4.6 50 646-698 16-71 (85)
29 2egp_A Tripartite motif-contai 99.1 2.7E-11 9.3E-16 99.0 1.8 50 646-698 9-65 (79)
30 2ysj_A Tripartite motif-contai 99.1 1.2E-10 4.1E-15 92.2 4.9 44 646-692 17-63 (63)
31 3lrq_A E3 ubiquitin-protein li 99.0 6.1E-11 2.1E-15 102.9 3.2 47 649-698 22-70 (100)
32 4ap4_A E3 ubiquitin ligase RNF 99.0 6.9E-11 2.4E-15 103.9 3.6 52 647-698 5-60 (133)
33 3ztg_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 98.4 4.8 48 646-696 10-60 (92)
34 2y43_A E3 ubiquitin-protein li 99.0 9.2E-11 3.1E-15 100.7 3.5 47 649-698 22-69 (99)
35 2ckl_A Polycomb group ring fin 99.0 8.8E-11 3E-15 102.5 3.2 48 648-698 14-62 (108)
36 2ecj_A Tripartite motif-contai 99.0 1.6E-10 5.5E-15 89.3 4.1 43 647-692 13-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 103.9 3.6 47 649-698 52-99 (124)
38 1jm7_A BRCA1, breast cancer ty 99.0 2.6E-10 8.9E-15 98.8 4.2 46 650-698 22-70 (112)
39 2ckl_B Ubiquitin ligase protei 99.0 2.2E-10 7.6E-15 106.7 3.7 48 648-697 53-101 (165)
40 1g25_A CDK-activating kinase a 98.9 6.4E-10 2.2E-14 88.7 4.6 51 648-698 2-55 (65)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 4.8E-10 1.6E-14 98.5 3.7 53 646-698 69-125 (133)
42 1z6u_A NP95-like ring finger p 98.9 5.1E-10 1.7E-14 104.5 3.8 48 649-699 78-126 (150)
43 3l11_A E3 ubiquitin-protein li 98.9 2.2E-10 7.5E-15 100.8 0.6 47 648-697 14-61 (115)
44 2ct0_A Non-SMC element 1 homol 98.9 1.1E-09 3.7E-14 92.9 4.5 52 645-698 11-64 (74)
45 3hct_A TNF receptor-associated 98.9 5.8E-10 2E-14 99.1 3.0 50 646-698 15-65 (118)
46 2kr4_A Ubiquitin conjugation f 98.9 1.1E-09 3.9E-14 93.1 4.1 48 647-697 12-59 (85)
47 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.8E-14 95.8 3.5 47 649-698 23-70 (116)
48 2kre_A Ubiquitin conjugation f 98.8 1.7E-09 5.7E-14 95.2 3.5 49 647-698 27-75 (100)
49 1wgm_A Ubiquitin conjugation f 98.8 2.2E-09 7.5E-14 94.1 3.7 49 647-698 20-69 (98)
50 2c2l_A CHIP, carboxy terminus 98.8 2.6E-09 8.8E-14 104.4 4.0 49 646-697 205-254 (281)
51 2vje_A E3 ubiquitin-protein li 98.8 1.5E-09 5.3E-14 87.9 1.5 50 648-700 7-59 (64)
52 2y1n_A E3 ubiquitin-protein li 98.7 3.7E-09 1.3E-13 113.2 4.3 47 649-698 332-379 (389)
53 1jm7_B BARD1, BRCA1-associated 98.7 2.1E-09 7.3E-14 95.3 1.0 44 649-697 22-66 (117)
54 2vje_B MDM4 protein; proto-onc 98.7 2.5E-09 8.5E-14 86.4 1.1 53 647-700 5-58 (63)
55 1e4u_A Transcriptional repress 98.7 8.9E-09 3E-13 87.1 4.6 52 646-698 8-62 (78)
56 1bor_A Transcription factor PM 98.7 3.6E-09 1.2E-13 83.2 1.9 46 647-698 4-49 (56)
57 3knv_A TNF receptor-associated 98.7 1.9E-09 6.6E-14 99.8 0.2 47 647-696 29-76 (141)
58 4ic3_A E3 ubiquitin-protein li 98.7 4.2E-09 1.4E-13 87.1 1.0 45 649-700 24-69 (74)
59 2yu4_A E3 SUMO-protein ligase 98.6 9.5E-09 3.3E-13 88.7 3.2 46 647-695 5-59 (94)
60 3hcs_A TNF receptor-associated 98.6 1.9E-08 6.5E-13 94.0 3.0 50 646-698 15-65 (170)
61 2ecg_A Baculoviral IAP repeat- 98.5 2.7E-08 9.3E-13 82.1 2.9 44 650-700 26-70 (75)
62 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.8E-08 6.1E-13 107.0 1.8 55 646-700 305-375 (381)
63 2f42_A STIP1 homology and U-bo 98.5 5.9E-08 2E-12 94.3 4.0 51 645-698 102-153 (179)
64 2ea5_A Cell growth regulator w 98.4 9.2E-08 3.2E-12 78.6 3.7 48 646-700 12-60 (68)
65 1wim_A KIAA0161 protein; ring 98.4 7.8E-08 2.7E-12 82.2 2.1 48 648-695 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.3 8.8E-08 3E-12 80.7 0.2 44 649-699 18-62 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.3 5.2E-07 1.8E-11 73.1 4.6 48 647-697 4-58 (60)
68 3t6p_A Baculoviral IAP repeat- 98.3 9.6E-08 3.3E-12 100.6 -0.2 46 648-700 294-340 (345)
69 2bay_A PRE-mRNA splicing facto 98.2 2.9E-07 1E-11 74.6 2.2 46 650-698 4-50 (61)
70 3htk_C E3 SUMO-protein ligase 98.2 3.5E-07 1.2E-11 93.9 2.2 48 648-697 180-231 (267)
71 3vk6_A E3 ubiquitin-protein li 97.5 5.6E-05 1.9E-09 68.0 3.3 45 651-697 3-48 (101)
72 3nw0_A Non-structural maintena 97.4 7.1E-05 2.4E-09 75.2 3.1 48 648-697 179-228 (238)
73 2ko5_A Ring finger protein Z; 93.7 0.019 6.4E-07 51.5 1.3 49 647-700 26-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.1 0.036 1.2E-06 47.4 2.1 34 649-682 3-36 (101)
75 2lri_C Autoimmune regulator; Z 90.1 0.18 6.1E-06 41.7 3.0 49 647-698 10-62 (66)
76 1wil_A KIAA1045 protein; ring 86.0 0.57 2E-05 41.4 3.7 38 644-682 10-47 (89)
77 3m62_A Ubiquitin conjugation f 80.7 0.91 3.1E-05 54.0 3.7 51 645-698 887-938 (968)
78 1we9_A PHD finger family prote 78.9 0.31 1.1E-05 39.1 -0.6 50 646-695 3-58 (64)
79 2l5u_A Chromodomain-helicase-D 77.3 1 3.5E-05 36.3 1.9 48 646-696 8-59 (61)
80 3i2d_A E3 SUMO-protein ligase 75.9 1 3.5E-05 48.4 2.1 47 649-697 249-299 (371)
81 2k16_A Transcription initiatio 75.3 0.52 1.8E-05 38.9 -0.3 52 646-697 15-70 (75)
82 1mm2_A MI2-beta; PHD, zinc fin 74.4 0.66 2.2E-05 37.4 0.1 49 646-697 6-58 (61)
83 1f62_A Transcription factor WS 74.2 1.1 3.8E-05 34.4 1.3 44 651-694 2-49 (51)
84 2ysm_A Myeloid/lymphoid or mix 71.5 1 3.5E-05 39.6 0.6 39 646-684 4-42 (111)
85 4fo9_A E3 SUMO-protein ligase 70.4 2 6.9E-05 46.1 2.7 46 650-697 216-265 (360)
86 1wep_A PHF8; structural genomi 69.8 3.1 0.00011 34.8 3.2 49 648-697 11-65 (79)
87 2cs3_A Protein C14ORF4, MY039 69.5 6 0.00021 34.9 4.9 36 647-685 13-52 (93)
88 2lbm_A Transcriptional regulat 68.5 3.7 0.00013 38.8 3.7 52 643-697 57-119 (142)
89 2yt5_A Metal-response element- 66.0 0.76 2.6E-05 37.0 -1.3 52 646-697 3-63 (66)
90 1wem_A Death associated transc 64.7 1.7 5.7E-05 36.1 0.6 47 649-696 16-71 (76)
91 2lv9_A Histone-lysine N-methyl 63.8 1.9 6.7E-05 37.7 0.8 46 649-695 28-76 (98)
92 2yql_A PHD finger protein 21A; 63.5 0.58 2E-05 36.9 -2.4 46 646-694 6-55 (56)
93 3v43_A Histone acetyltransfera 63.1 8.3 0.00028 34.2 4.8 33 648-680 4-42 (112)
94 3ql9_A Transcriptional regulat 61.5 5.2 0.00018 37.3 3.2 55 640-697 48-113 (129)
95 2puy_A PHD finger protein 21A; 60.5 0.53 1.8E-05 37.6 -3.1 47 647-696 3-53 (60)
96 2kgg_A Histone demethylase jar 60.2 5.1 0.00018 31.1 2.5 43 651-693 4-52 (52)
97 2l43_A N-teminal domain from h 59.9 2.2 7.6E-05 36.9 0.4 50 647-696 23-76 (88)
98 1weu_A Inhibitor of growth fam 57.4 4.6 0.00016 35.5 2.0 44 649-696 36-86 (91)
99 2ri7_A Nucleosome-remodeling f 56.9 2.2 7.6E-05 39.9 -0.0 46 648-694 7-58 (174)
100 2vpb_A Hpygo1, pygopus homolog 55.8 7.7 0.00026 31.8 3.0 35 646-680 5-41 (65)
101 2ku3_A Bromodomain-containing 55.6 3.1 0.00011 34.7 0.6 49 646-694 13-65 (71)
102 1xwh_A Autoimmune regulator; P 54.8 1.4 4.7E-05 35.9 -1.6 47 646-695 5-55 (66)
103 1fp0_A KAP-1 corepressor; PHD 52.9 3.1 0.00011 36.5 0.2 47 646-695 22-72 (88)
104 1wen_A Inhibitor of growth fam 52.7 6.5 0.00022 32.7 2.1 45 648-696 15-66 (71)
105 3mpx_A FYVE, rhogef and PH dom 51.6 3.1 0.00011 43.5 0.0 50 647-696 373-430 (434)
106 1wev_A Riken cDNA 1110020M19; 50.4 1.5 5.2E-05 37.8 -2.1 46 649-694 16-71 (88)
107 2e6r_A Jumonji/ARID domain-con 50.1 1.5 5.1E-05 38.1 -2.2 49 646-694 13-65 (92)
108 3v43_A Histone acetyltransfera 49.9 3.9 0.00013 36.3 0.3 46 649-694 61-111 (112)
109 2yw8_A RUN and FYVE domain-con 45.7 11 0.00039 31.7 2.6 38 645-682 15-53 (82)
110 1wee_A PHD finger family prote 44.0 1.9 6.5E-05 35.5 -2.4 48 648-696 15-67 (72)
111 1wew_A DNA-binding family prot 43.3 4.9 0.00017 33.7 -0.1 48 648-696 15-73 (78)
112 2pv0_B DNA (cytosine-5)-methyl 42.6 24 0.00083 38.2 5.1 57 637-696 81-149 (386)
113 1z2q_A LM5-1; membrane protein 42.5 16 0.00055 30.9 3.0 39 644-682 16-55 (84)
114 3o70_A PHD finger protein 13; 42.3 3.4 0.00012 34.1 -1.2 47 647-694 17-66 (68)
115 3ask_A E3 ubiquitin-protein li 41.6 4.5 0.00015 40.9 -0.6 46 650-695 175-225 (226)
116 3shb_A E3 ubiquitin-protein li 41.3 3.2 0.00011 35.3 -1.5 44 651-694 28-76 (77)
117 1zbd_B Rabphilin-3A; G protein 41.1 11 0.00037 35.0 1.9 34 647-680 53-88 (134)
118 1joc_A EEA1, early endosomal a 40.8 13 0.00043 34.0 2.2 38 645-682 65-103 (125)
119 2cu8_A Cysteine-rich protein 2 40.7 15 0.00051 29.4 2.5 41 648-698 8-48 (76)
120 2xb1_A Pygopus homolog 2, B-ce 40.7 13 0.00044 33.0 2.2 48 649-696 3-62 (105)
121 2co8_A NEDD9 interacting prote 40.6 18 0.00062 29.7 3.0 42 647-698 13-54 (82)
122 2kwj_A Zinc finger protein DPF 40.6 7.2 0.00025 34.7 0.6 33 650-682 2-41 (114)
123 1dvp_A HRS, hepatocyte growth 39.1 12 0.00042 36.4 2.0 34 649-682 161-195 (220)
124 1x4u_A Zinc finger, FYVE domai 38.9 17 0.00057 30.8 2.5 37 645-681 10-47 (84)
125 3t7l_A Zinc finger FYVE domain 38.3 17 0.00059 31.2 2.6 37 647-683 18-55 (90)
126 2d8v_A Zinc finger FYVE domain 37.4 15 0.00053 31.0 2.1 33 647-683 6-39 (67)
127 3zyq_A Hepatocyte growth facto 37.3 14 0.00047 36.5 2.1 35 648-682 163-198 (226)
128 2dj7_A Actin-binding LIM prote 36.9 21 0.0007 29.4 2.8 40 648-697 14-53 (80)
129 1y02_A CARP2, FYVE-ring finger 36.8 3.7 0.00013 37.7 -2.0 47 648-694 18-65 (120)
130 2e6s_A E3 ubiquitin-protein li 36.4 5.9 0.0002 33.6 -0.6 45 650-694 27-76 (77)
131 1weo_A Cellulose synthase, cat 36.4 48 0.0016 29.6 5.1 50 648-697 15-69 (93)
132 1iml_A CRIP, cysteine rich int 36.1 11 0.00037 30.2 1.0 51 647-701 25-76 (76)
133 3asl_A E3 ubiquitin-protein li 35.0 6.3 0.00021 32.6 -0.7 45 651-695 20-69 (70)
134 1x64_A Alpha-actinin-2 associa 34.8 30 0.001 28.6 3.5 41 647-698 23-63 (89)
135 1x62_A C-terminal LIM domain p 34.2 26 0.0009 28.3 3.0 39 648-697 14-52 (79)
136 1wfk_A Zinc finger, FYVE domai 34.0 23 0.00078 30.5 2.7 37 646-682 6-43 (88)
137 1vfy_A Phosphatidylinositol-3- 33.0 25 0.00084 29.0 2.6 33 649-681 11-44 (73)
138 1z60_A TFIIH basal transcripti 32.4 17 0.00058 29.8 1.5 43 650-692 16-58 (59)
139 2dar_A PDZ and LIM domain prot 29.9 24 0.00081 29.3 2.0 39 648-697 24-62 (90)
140 4gne_A Histone-lysine N-methyl 29.9 23 0.00079 31.8 2.1 43 645-693 11-60 (107)
141 2ysm_A Myeloid/lymphoid or mix 29.6 5.2 0.00018 35.1 -2.1 45 651-695 56-104 (111)
142 2l3k_A Rhombotin-2, linker, LI 28.8 24 0.00083 31.1 2.0 37 647-684 34-70 (123)
143 3c6w_A P28ING5, inhibitor of g 28.6 7.2 0.00025 31.3 -1.3 42 649-694 9-57 (59)
144 2zet_C Melanophilin; complex, 28.5 22 0.00076 33.7 1.8 46 648-694 67-116 (153)
145 3a1b_A DNA (cytosine-5)-methyl 28.2 46 0.0016 32.1 3.9 54 639-696 69-135 (159)
146 1wyh_A SLIM 2, skeletal muscle 27.8 44 0.0015 26.1 3.2 40 649-697 5-44 (72)
147 1x63_A Skeletal muscle LIM-pro 27.7 39 0.0013 27.2 2.9 41 649-698 15-55 (82)
148 2cor_A Pinch protein; LIM doma 27.0 46 0.0016 27.1 3.2 39 648-697 14-52 (79)
149 2d8z_A Four and A half LIM dom 26.1 39 0.0014 26.3 2.6 36 650-696 6-41 (70)
150 2gmg_A Hypothetical protein PF 26.1 12 0.00039 34.1 -0.6 26 667-697 70-95 (105)
151 1x4l_A Skeletal muscle LIM-pro 26.0 46 0.0016 26.2 3.0 40 649-697 5-46 (72)
152 2d8x_A Protein pinch; LIM doma 24.7 42 0.0014 26.3 2.5 26 650-678 6-31 (70)
153 1x61_A Thyroid receptor intera 24.6 49 0.0017 25.9 2.9 35 648-684 32-66 (72)
154 2l4z_A DNA endonuclease RBBP8, 24.4 28 0.00097 31.1 1.7 40 648-697 60-99 (123)
155 1m3v_A FLIN4, fusion of the LI 24.2 51 0.0017 28.9 3.2 50 649-698 32-81 (122)
156 1x4k_A Skeletal muscle LIM-pro 24.0 40 0.0014 26.4 2.3 39 650-697 6-44 (72)
157 2o35_A Hypothetical protein DU 23.4 30 0.001 31.4 1.6 11 674-684 43-53 (105)
158 3fyb_A Protein of unknown func 23.3 30 0.001 31.4 1.6 11 674-684 42-52 (104)
159 1g47_A Pinch protein; LIM doma 22.4 53 0.0018 26.0 2.7 42 648-698 10-51 (77)
160 2cur_A Skeletal muscle LIM-pro 22.4 40 0.0014 26.3 2.0 10 651-660 7-16 (69)
161 2d8y_A Eplin protein; LIM doma 22.1 45 0.0015 27.6 2.4 28 649-678 15-42 (91)
162 1wig_A KIAA1808 protein; LIM d 22.1 51 0.0017 26.4 2.6 25 651-678 7-31 (73)
163 2vnf_A ING 4, P29ING4, inhibit 21.6 11 0.00039 30.1 -1.4 42 649-694 10-58 (60)
164 3f6q_B LIM and senescent cell 21.3 56 0.0019 25.2 2.6 42 648-698 10-51 (72)
165 1x68_A FHL5 protein; four-and- 21.2 47 0.0016 26.5 2.2 40 649-697 5-46 (76)
166 1a7i_A QCRP2 (LIM1); LIM domai 20.8 27 0.00094 28.2 0.7 38 649-696 7-44 (81)
167 3pwf_A Rubrerythrin; non heme 20.2 38 0.0013 32.4 1.6 23 666-695 140-162 (170)
168 2kwj_A Zinc finger protein DPF 20.1 8.5 0.00029 34.3 -2.7 46 650-695 59-108 (114)
169 1x6a_A LIMK-2, LIM domain kina 20.0 52 0.0018 26.4 2.3 35 651-696 17-51 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.55 E-value=5.3e-15 Score=126.48 Aligned_cols=76 Identities=25% Similarity=0.544 Sum_probs=62.6
Q ss_pred CCCCCHHHHHhhccccccCC--CCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 624 CTGLREEAILANLTVQRYGS--ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 624 stGLSEeeIiksL~~~Kyss--esseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
..+++++.+ +.|+..++.. ........|+||+++|..++.+..|+|+|.||..||.+||..+.+||+||+.+.+.|
T Consensus 14 ~~~~s~~~i-~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~l 91 (91)
T 2l0b_A 14 NPPASKESI-DALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL 91 (91)
T ss_dssp CCCCCHHHH-HTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCCC
T ss_pred CCCCCHHHH-HhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCCC
Confidence 456666665 6677776653 234567789999999999988889999999999999999999999999999987654
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=119.56 Aligned_cols=65 Identities=26% Similarity=0.748 Sum_probs=54.5
Q ss_pred hhccccccC-CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 634 ANLTVQRYG-SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 634 ksL~~~Kys-sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
+.++..++. .....+...|+||+++|..++.+..|+|+|.||..||.+||..+..||+||+.+.+
T Consensus 7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345555555 23345678899999999999888899999999999999999999999999998765
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=6.7e-14 Score=112.55 Aligned_cols=56 Identities=34% Similarity=0.870 Sum_probs=49.6
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
.......|+||++.|..++.+..|+|+|.||..||.+|+..+.+||+||+.+...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34556789999999998888889999999999999999999999999999887653
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.6e-14 Score=113.03 Aligned_cols=54 Identities=31% Similarity=0.811 Sum_probs=48.8
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
......|+||+++|..++.+..|+|+|.||..||.+|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345678999999999999888899999999999999999999999999988653
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.40 E-value=1.1e-13 Score=106.60 Aligned_cols=51 Identities=35% Similarity=0.966 Sum_probs=46.4
Q ss_pred CCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
++...|+||+++|..++.+..++ |+|.||..||.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=1.6e-13 Score=112.74 Aligned_cols=53 Identities=36% Similarity=0.871 Sum_probs=48.1
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
......|+||++.|..++.+..|+|+|.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34567899999999999888889999999999999999999999999998764
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=7.3e-13 Score=115.95 Aligned_cols=50 Identities=32% Similarity=0.525 Sum_probs=41.3
Q ss_pred CCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHh-----cCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLV-----RKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRkeIL 697 (701)
.++.|+||+++|..+. .+..++|+|.||..||.+||. .+.+||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4578999999997754 334679999999999999994 5678999998764
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=110.31 Aligned_cols=53 Identities=26% Similarity=0.788 Sum_probs=43.1
Q ss_pred CCCCCccccccccccC-----------CCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYAD-----------GENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFed-----------gE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
+.+++.|+||+++|.+ ++.+..+ +|+|.||..||.+||..+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4567778888888865 3445556 599999999999999999999999998653
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=1.3e-12 Score=100.38 Aligned_cols=51 Identities=27% Similarity=0.632 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCC-ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.....|+||++.|.+.+ .+..++|+|.||..||.+|+..+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999997643 4667899999999999999999999999999864
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=103.95 Aligned_cols=53 Identities=30% Similarity=0.696 Sum_probs=45.3
Q ss_pred CCCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
..+...|+||++.|.+. ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35578899999999865 334678999999999999999999999999998754
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.4e-12 Score=104.75 Aligned_cols=53 Identities=30% Similarity=0.696 Sum_probs=45.5
Q ss_pred CCCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
..+...|+||++.|.+. ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34567899999999764 445678999999999999999999999999998764
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.23 E-value=3.5e-12 Score=100.00 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=44.0
Q ss_pred CCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
+...|+||++.|.+. ..+..++|||.||..||.+|+..+..||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 357899999999764 345678999999999999999999999999998754
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.22 E-value=6e-12 Score=112.31 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=44.1
Q ss_pred CCCCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 646 PTNNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 646 seedeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
+..++.|+||++.|.... .+..++|+|.||..||.+||..+.+||+||+++
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456789999999998652 256689999999999999999999999999984
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-12 Score=103.61 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=43.7
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
..+...|+||++.|.+.. .++|||.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEE---EETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCE---EccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 345678999999987664 78999999999999999999999999998753
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=5.8e-12 Score=100.75 Aligned_cols=51 Identities=31% Similarity=0.634 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
.....|+||++.+.++ ...++|||.||..||.+|+..+.+||+||+.+...
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 3467899999998764 35789999999999999999999999999987653
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=100.95 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.+...|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDAT---TITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSCE---ECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCcC---EECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 45678999999998764 55 999999999999999999999999998754
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=101.92 Aligned_cols=53 Identities=25% Similarity=0.595 Sum_probs=44.7
Q ss_pred CCCCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHHhcC---CCCCCCCCCcc
Q 047787 645 SPTNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLVRK---NQCPICKMTGL 697 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~rK---nSCPICRkeIL 697 (701)
...+...|+||++.|.+.+. ...|+|||.||..||.+|+..+ ..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34556789999999988654 5578999999999999999976 78999999764
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=102.38 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=43.6
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
......|+||++.|.++. .++|||.||..||.+|+.....||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 345678999999997764 68999999999999999999999999998753
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.6e-12 Score=101.59 Aligned_cols=49 Identities=39% Similarity=0.946 Sum_probs=43.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
.+...|+||++.+.+ ..++|+|.||..||.+|+..+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 456789999999877 4889999999999999999999999999987643
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.2e-11 Score=112.75 Aligned_cols=47 Identities=36% Similarity=0.921 Sum_probs=42.0
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
+..|+||++.|.++. .|+|||.||..||..|+..+.+||+||+.+..
T Consensus 53 ~~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEE---EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCce---ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 357999999998765 78999999999999999999999999998753
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=2.4e-11 Score=99.80 Aligned_cols=50 Identities=24% Similarity=0.699 Sum_probs=42.8
Q ss_pred CCCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcC--CCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRK--NQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rK--nSCPICRkeILp 698 (701)
..+...|+||++.|.++. .|+ |||.||..||.+|+..+ ..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345678999999998776 688 99999999999999865 689999998553
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.13 E-value=2.9e-12 Score=116.80 Aligned_cols=53 Identities=26% Similarity=0.550 Sum_probs=3.4
Q ss_pred CCCCCCCccccccccccCCC---------------ceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 644 ESPTNNGSCCICQEKYADGE---------------NLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 644 esseedeeCpICLEEFedgE---------------~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
..+..++.|+||+++|.+.. .+..++|+|.||..||.+||..+.+||+||++.
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EECCCC--------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 34556789999999997632 233359999999999999999999999999984
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=97.95 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=42.4
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRkeILp 698 (701)
..+...|+||++.|.++. .++|||.||..||..|+. .+..||+||+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeE---EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345678999999998655 679999999999999997 45689999998764
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.1e-11 Score=95.86 Aligned_cols=49 Identities=20% Similarity=0.568 Sum_probs=42.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
.+...|+||++.+.++. .++|||.||..||.+|+. ....||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45678999999998877 589999999999999995 56789999998754
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=4.8e-11 Score=97.86 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc------CCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR------KNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r------KnSCPICRkeILp 698 (701)
.....|+||++.|.++. .++|||.||..||..|+.. ...||+||+.+..
T Consensus 17 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45678999999998876 7899999999999999997 6789999998753
No 26
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.3e-11 Score=101.99 Aligned_cols=53 Identities=28% Similarity=0.688 Sum_probs=44.5
Q ss_pred CCCCCCccccccccccCCCceeeeCCC-----CcccHHHHHHHHhcCC--CCCCCCCCccc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCG-----HDFHPNCIKQWLVRKN--QCPICKMTGLA 698 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCG-----HiFH~dCI~qWL~rKn--SCPICRkeILp 698 (701)
.......|.||+++|.+++.+ ++||. |.||..||++||..+. +||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345567899999999877766 58996 9999999999999664 89999998754
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=5.1e-11 Score=97.81 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=42.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL 697 (701)
.+...|+||++.|.++. .++|||.||..||.+|+.. +.+||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45678999999998776 7899999999999999986 778999999874
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.9e-11 Score=97.33 Aligned_cols=50 Identities=28% Similarity=0.699 Sum_probs=43.3
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc------CCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR------KNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r------KnSCPICRkeILp 698 (701)
..+...|+||++.|.++. .|+|||.||..||..|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345678999999998765 6799999999999999987 7789999998753
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.07 E-value=2.7e-11 Score=99.00 Aligned_cols=50 Identities=30% Similarity=0.619 Sum_probs=43.1
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-------CCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-------KNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-------KnSCPICRkeILp 698 (701)
..+...|+||++.|.++. .|+|||.||..||.+|+.. ...||+||+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345678999999998876 6899999999999999986 5689999998753
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=92.22 Aligned_cols=44 Identities=32% Similarity=0.681 Sum_probs=38.3
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPIC 692 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPIC 692 (701)
..+...|+||++.|.++. .|+|||.||..||.+|+. .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 355678999999998765 679999999999999998 45689998
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.05 E-value=6.1e-11 Score=102.93 Aligned_cols=47 Identities=32% Similarity=0.670 Sum_probs=41.1
Q ss_pred CCccccccccccCCCceee-eCCCCcccHHHHHHHHhcC-CCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQWLVRK-NQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~-LPCGHiFH~dCI~qWL~rK-nSCPICRkeILp 698 (701)
...|+||++.|.++. . ++|||.||..||.+|+..+ ..||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCcc---ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 467999999998654 5 8999999999999999987 699999998643
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6.9e-11 Score=103.90 Aligned_cols=52 Identities=29% Similarity=0.660 Sum_probs=44.9
Q ss_pred CCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.+...|+||++.|.++ ..+..++|||.||..||.+||..+.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3567899999999875 344688999999999999999999999999998753
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=98.44 Aligned_cols=48 Identities=25% Similarity=0.708 Sum_probs=41.9
Q ss_pred CCCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcC--CCCCCCCCCc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRK--NQCPICKMTG 696 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rK--nSCPICRkeI 696 (701)
..+...|+||++.|.++. .|+ |||.||..||..|+... ..||+||+.+
T Consensus 10 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 355788999999999876 789 99999999999999854 5899999986
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=9.2e-11 Score=100.69 Aligned_cols=47 Identities=32% Similarity=0.683 Sum_probs=41.3
Q ss_pred CCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...|+||++.|.++. .+ +|||.||..||..|+..+..||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 467999999998754 55 999999999999999999999999998753
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=8.8e-11 Score=102.46 Aligned_cols=48 Identities=27% Similarity=0.710 Sum_probs=42.4
Q ss_pred CCCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
+...|+||++.|.++. .+ +|||.||..||..|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcC---EeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4578999999998754 55 999999999999999999999999998764
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=89.26 Aligned_cols=43 Identities=35% Similarity=0.969 Sum_probs=37.4
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPIC 692 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPIC 692 (701)
.+...|+||++.|.++. .|+|||.||..||.+|+. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999998876 689999999999999954 56789998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=103.87 Aligned_cols=47 Identities=21% Similarity=0.443 Sum_probs=40.9
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILp 698 (701)
...|+||++.|.++. .++|||.||..||..|+..+. .||+||+.+..
T Consensus 52 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 467999999998765 789999999999999998554 89999998754
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.6e-10 Score=98.85 Aligned_cols=46 Identities=33% Similarity=0.607 Sum_probs=40.4
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC---CCCCCCCCccc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN---QCPICKMTGLA 698 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn---SCPICRkeILp 698 (701)
..|+||++.|.++. .++|||.||..||..|+..+. .||+||..+..
T Consensus 22 ~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 57999999998776 689999999999999999664 89999997653
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.96 E-value=2.2e-10 Score=106.75 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=40.5
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL 697 (701)
....|+||++.|.++. ..++|||.||..||..||.. +..||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTM--TTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEE--EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcC--EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3458999999998754 23499999999999999997 778999999874
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=6.4e-10 Score=88.70 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=41.3
Q ss_pred CCCccccccc-cccCCCce-eeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787 648 NNGSCCICQE-KYADGENL-GKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLE-EFedgE~L-r~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp 698 (701)
++..|+||++ .|..+... ..++|||.||..||.+|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3567999999 78777543 35799999999999999875 4679999998754
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=4.8e-10 Score=98.53 Aligned_cols=53 Identities=28% Similarity=0.638 Sum_probs=45.1
Q ss_pred CCCCCccccccccccCC----CceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADG----ENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedg----E~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
......|+||++.|.+. .....++|||.||..||.+||..+.+||+||..+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 35567899999999764 234578999999999999999999999999998764
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=5.1e-10 Score=104.49 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=41.7
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCcccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLAR 699 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILpt 699 (701)
...|+||++.|.++. .|+|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 367999999998776 689999999999999999665 799999987643
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=2.2e-10 Score=100.78 Aligned_cols=47 Identities=23% Similarity=0.570 Sum_probs=41.2
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL 697 (701)
++..|+||++.|.++. .|+|||.||..||.+|+.. +..||+||+.+.
T Consensus 14 ~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3567999999998776 7799999999999999986 668999999864
No 44
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=92.88 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=43.4
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--CCCCCCCCCccc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--NQCPICKMTGLA 698 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--nSCPICRkeILp 698 (701)
..+..+.|.||++.|..++. ...|+|.||..||.+||+.+ .+||+||+.+..
T Consensus 11 y~~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred ccCCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34567899999999987652 33999999999999999977 889999987653
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.88 E-value=5.8e-10 Score=99.06 Aligned_cols=50 Identities=24% Similarity=0.498 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILp 698 (701)
..+...|+||++.|.++. .++|||.||..||.+|+..+. .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeE---ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345678999999998774 689999999999999999765 89999998754
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=1.1e-09 Score=93.13 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
.....|+||++.|.++. +++|||.||..||.+||....+||+||..+.
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 45678999999999988 8899999999999999998899999999764
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=1.4e-09 Score=95.78 Aligned_cols=47 Identities=32% Similarity=0.607 Sum_probs=41.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeILp 698 (701)
...|+||++.|.++. .++|||.||..||.+|+.. ...||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 467999999998765 6899999999999999997 7789999998754
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=1.7e-09 Score=95.20 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=44.2
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.....|+||++.|.++. +++|||.||..||.+||....+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45678999999999998 88999999999999999988899999998653
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.79 E-value=2.2e-09 Score=94.13 Aligned_cols=49 Identities=12% Similarity=0.012 Sum_probs=44.2
Q ss_pred CCCCccccccccccCCCceeeeCCC-CcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.+...|+||++.|.++. +++|| |.||+.||.+||....+||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45678999999999998 88999 999999999999988899999998653
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=2.6e-09 Score=104.43 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=42.8
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-CCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-NQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-nSCPICRkeIL 697 (701)
......|+||++.|.++. +++|||+||..||..||... .+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345778999999999988 88999999999999999864 45999999875
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=1.5e-09 Score=87.86 Aligned_cols=50 Identities=26% Similarity=0.522 Sum_probs=42.2
Q ss_pred CCCccccccccccCCCceeee--CCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 648 NNGSCCICQEKYADGENLGKL--DCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L--PCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
++..|.||++.+.+.. .+ ||||. ||..|+..|+..+..||+||+.+...+
T Consensus 7 ~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 7 AIEPCVICQGRPKNGC---IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp GGSCCTTTSSSCSCEE---EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CcCCCCcCCCCCCCEE---EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 4578999999876553 44 99999 899999999999899999999886543
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=3.7e-09 Score=113.18 Aligned_cols=47 Identities=28% Similarity=0.615 Sum_probs=41.2
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
...|+||++.+.+. ..++|||.||..||..|+. .+..||+||+.+..
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46899999998664 3789999999999999999 78899999998754
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2.1e-09 Score=95.29 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
...|+||++.|.++. .+ +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 467999999998876 67 9999999999999998 78999999874
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=2.5e-09 Score=86.41 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=42.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
.....|.||++.+.+.. +..+||||. ||..|+..|......||+||+++...+
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CcCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 34578999999876554 222399998 999999999998889999999886543
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.71 E-value=8.9e-09 Score=87.13 Aligned_cols=52 Identities=17% Similarity=0.403 Sum_probs=40.3
Q ss_pred CCCCCccccccccccCCCceeee--CCCCcccHHHHHHHHh-cCCCCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWLV-RKNQCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL~-rKnSCPICRkeILp 698 (701)
..++..|+||++.+...+. ..+ +|||.||..||..|+. ....||+||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3456789999999865432 234 5999999999999985 45679999998754
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.6e-09 Score=83.20 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=39.4
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.+...|+||++.|.++. .|+|||.||..||..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeE---EcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 45678999999999876 7899999999999884 6789999998753
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=1.9e-09 Score=99.79 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=41.3
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeI 696 (701)
.....|+||++.|.++. .++|||.||..||.+|+.... .||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45678999999998885 689999999999999998665 899999975
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=4.2e-09 Score=87.10 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=38.6
Q ss_pred CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
...|+||++.+.+.. .+||||. ||..|+..| ..||+||+.+...+
T Consensus 24 ~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 24 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 69 (74)
T ss_dssp HTBCTTTSSSBCCEE---EETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred CCCCCCCCCCCCCEE---EcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence 357999999987654 7899999 999999999 88999999886543
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=9.5e-09 Score=88.66 Aligned_cols=46 Identities=26% Similarity=0.583 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCCceeeeC-CCCcccHHHHHHHHhcC------CCCCC--CCCC
Q 047787 647 TNNGSCCICQEKYADGENLGKLD-CGHDFHPNCIKQWLVRK------NQCPI--CKMT 695 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LP-CGHiFH~dCI~qWL~rK------nSCPI--CRke 695 (701)
.....|+||++.|.++. +++ |||.||+.||.+||... .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999999999887 785 99999999999999854 48999 9865
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.57 E-value=1.9e-08 Score=93.97 Aligned_cols=50 Identities=24% Similarity=0.498 Sum_probs=42.8
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC-CCCCCCCCccc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN-QCPICKMTGLA 698 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn-SCPICRkeILp 698 (701)
..+...|+||++.|.++. .++|||.||..||.+|+..+. .||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 345678999999998875 689999999999999998654 89999998754
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.7e-08 Score=82.12 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=37.2
Q ss_pred CccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
..|+||++.+.+.. .+||||. ||..|+.. ...||+||+.+...+
T Consensus 26 ~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 26 KLCKICMDRNIAIV---FVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCcCCCCCCCEE---EecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 56999999987765 7899999 99999964 378999999887654
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.53 E-value=1.8e-08 Score=106.98 Aligned_cols=55 Identities=25% Similarity=0.591 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCce----e-eeCCCCcccHHHHHHHHhcC-----------CCCCCCCCCccccC
Q 047787 646 PTNNGSCCICQEKYADGENL----G-KLDCGHDFHPNCIKQWLVRK-----------NQCPICKMTGLARI 700 (701)
Q Consensus 646 seedeeCpICLEEFedgE~L----r-~LPCGHiFH~dCI~qWL~rK-----------nSCPICRkeILptL 700 (701)
.+...+|+||++.+.+...+ + -++|+|.||..||.+||+.. ..||.||+++...|
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 35677899999999873322 2 23799999999999999842 46999999887655
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.48 E-value=5.9e-08 Score=94.27 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=43.7
Q ss_pred CCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC-CCCCCCCCCccc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK-NQCPICKMTGLA 698 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK-nSCPICRkeILp 698 (701)
.......|+||++.|.++. +++|||.||..||..||... .+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3456788999999999887 78999999999999999864 469999997643
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=9.2e-08 Score=78.64 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=39.2
Q ss_pred CCCCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
..+...|.||++.+.+. ..|||||. ||..|+.. ...||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 34567899999987654 37899999 99999984 478999999987654
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=7.8e-08 Score=82.20 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=39.4
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--------CCCCC--CCCC
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--------NQCPI--CKMT 695 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--------nSCPI--CRke 695 (701)
....|+||++++..++.+..++|||.||..||.+++..+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456899999999877655445899999999999999732 36999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=8.8e-08 Score=80.72 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=36.8
Q ss_pred CCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCcccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLAR 699 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILpt 699 (701)
...|.||++.+.+.. .+||||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~~v---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINST---FCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEE---EETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEE---EECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 357999999876543 7899999 999999887 4999999987654
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.29 E-value=5.2e-07 Score=73.14 Aligned_cols=48 Identities=27% Similarity=0.692 Sum_probs=37.7
Q ss_pred CCCCccccccccccCCCceeeeCCC--C---cccHHHHHHHHhc--CCCCCCCCCCcc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCG--H---DFHPNCIKQWLVR--KNQCPICKMTGL 697 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCG--H---iFH~dCI~qWL~r--KnSCPICRkeIL 697 (701)
.+...|.||+++.. +.+ .+||. | .||..||.+|+.. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 333 57865 4 8999999999984 568999999764
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.27 E-value=9.6e-08 Score=100.56 Aligned_cols=46 Identities=24% Similarity=0.602 Sum_probs=39.5
Q ss_pred CCCccccccccccCCCceeeeCCCCc-ccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHD-FHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHi-FH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
+...|+||++.+.+.. .|||||. ||..|+..| ..||+||..+...+
T Consensus 294 ~~~~C~IC~~~~~~~v---~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVV---FIPCGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TTCBCTTTSSSBCCEE---EETTCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCCccCCcCCceE---EcCCCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 3468999999987655 7899999 999999998 78999999887654
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.25 E-value=2.9e-07 Score=74.60 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=41.0
Q ss_pred CccccccccccCCCceeee-CCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 650 GSCCICQEKYADGENLGKL-DCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~L-PCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
..|+||++.+.++. .+ +|||+|.+.||.+||..+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 57999999999775 77 899999999999999988889999988743
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3.5e-07 Score=93.90 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=39.8
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC--CCCCC--CCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK--NQCPI--CKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK--nSCPI--CRkeIL 697 (701)
....|+||++.|.++. ..+.|||.||+.||.+|+... ..||+ |++.+.
T Consensus 180 ~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3458999999998887 234999999999999999854 46999 998654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.46 E-value=5.6e-05 Score=67.98 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=35.9
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhc-CCCCCCCCCCcc
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-KNQCPICKMTGL 697 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-KnSCPICRkeIL 697 (701)
.|.+|--.+. ...+.+||+|+||.+|+..|.++ .++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4777765543 44567899999999999999864 578999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.37 E-value=7.1e-05 Score=75.22 Aligned_cols=48 Identities=23% Similarity=0.573 Sum_probs=39.3
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCC--CCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPICRkeIL 697 (701)
....|.||.+-...+. ++-.|+|.||..|+..|++.+. .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4788999999998765 2234999999999999998654 8999998653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.71 E-value=0.019 Score=51.50 Aligned_cols=49 Identities=29% Similarity=0.576 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCCceeeeCCC-CcccHHHHHHHHhcCCCCCCCCCCccccC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLARI 700 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILptL 700 (701)
-.-..|-.|.-..+ - .+.|. |.+|..|+.-.|.....||+|++++..+|
T Consensus 26 ~G~~nCKsCWf~~k--~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--G---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS--S---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccC--C---eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 34567989986543 2 45675 99999999999999999999999988776
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.09 E-value=0.036 Score=47.44 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=26.5
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHH
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQW 682 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qW 682 (701)
+..|.||.+.|........+.|+|.||..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999987544333445899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.06 E-value=0.18 Score=41.73 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcC----CCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRK----NQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rK----nSCPICRkeILp 698 (701)
.....|.||.+. ++.+..-.|...||..|+...|... -.||.|+....+
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 445679999753 4433333799999999999888743 369999876543
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.03 E-value=0.57 Score=41.36 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=27.0
Q ss_pred CCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHH
Q 047787 644 ESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQW 682 (701)
Q Consensus 644 esseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qW 682 (701)
+....++.|.||- .|...+.+..--|+-+||..|+++.
T Consensus 10 e~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 3445688999995 3455553333358999999999996
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=80.66 E-value=0.91 Score=54.02 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=44.1
Q ss_pred CCCCCCccccccccccCCCceeeeCCC-CcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 645 SPTNNGSCCICQEKYADGENLGKLDCG-HDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~LPCG-HiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...+...|+|-++-+.++. +++.| ++|-+.+|.+||....+||+=|.++-.
T Consensus 887 ~iP~~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4456778999999999988 89998 689999999999999999999887643
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.85 E-value=0.31 Score=39.08 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=34.2
Q ss_pred CCCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHHh-----cCCCCCCCCCC
Q 047787 646 PTNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLV-----RKNQCPICKMT 695 (701)
Q Consensus 646 seedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRke 695 (701)
..+...|+||...+.+... +..-.|..-||..|+.--.. .+..||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456789999998864442 33337999999999864322 34569999654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=77.27 E-value=1 Score=36.30 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=33.5
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCCc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMTG 696 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRkeI 696 (701)
...+..|.||... ++.+..-.|...||..|+..-|.. .-.||.|+..-
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 3456789999873 443333378899999999876542 33599998753
No 80
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.86 E-value=1 Score=48.41 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCccccccccccCCCceeeeCCCCc--ccHHHHHHHHhc--CCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHD--FHPNCIKQWLVR--KNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHi--FH~dCI~qWL~r--KnSCPICRkeIL 697 (701)
...|+|-+..+..+. +-..|.|. |-..-+.+...+ +..||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~Pv--Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS--KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEE--EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccC--cCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 347888877766554 56689999 444444444433 345999998763
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.34 E-value=0.52 Score=38.90 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh----cCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV----RKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~----rKnSCPICRkeIL 697 (701)
......|.||.........+..=.|.-.||..|+..-+. ..-.||.|+..+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 344567999988754323222227899999999976544 2345999976543
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.43 E-value=0.66 Score=37.42 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=33.5
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRkeIL 697 (701)
+..+..|.||.+. ++.+..-.|...||..|+..-|.. .-.||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456789999862 442322368899999999865542 235999987654
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.18 E-value=1.1 Score=34.37 Aligned_cols=44 Identities=30% Similarity=0.665 Sum_probs=29.7
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKM 694 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRk 694 (701)
.|.||...-..++.+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899876433443333378999999999764442 235999975
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.49 E-value=1 Score=39.65 Aligned_cols=39 Identities=15% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV 684 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~ 684 (701)
...++.|.||.+.=...+.+..-.|...||..||...+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 456788999988633333244448999999999988765
No 85
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=70.38 E-value=2 Score=46.05 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=31.6
Q ss_pred CccccccccccCCCceeeeCCCCc--ccHHHHHHHHhcC--CCCCCCCCCcc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHD--FHPNCIKQWLVRK--NQCPICKMTGL 697 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHi--FH~dCI~qWL~rK--nSCPICRkeIL 697 (701)
..|+|-+..+..+. +-..|.|. |-..-+.++..++ ..||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~--Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPC--RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEE--EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCC--cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46998877766554 56689999 6555555544433 45999998764
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.83 E-value=3.1 Score=34.82 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=31.9
Q ss_pred CCCccccccccccCC-CceeeeCCCCcccHHHHHHHHh-----cCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADG-ENLGKLDCGHDFHPNCIKQWLV-----RKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedg-E~Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRkeIL 697 (701)
....| ||...+.+. ..|..-.|..-||..|+.--.. .+..||.|+...-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 33445 999887533 3333337999999999853222 3456999987643
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.48 E-value=6 Score=34.86 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=29.6
Q ss_pred CCCCccccccccccCCCceeeeCC----CCcccHHHHHHHHhc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDC----GHDFHPNCIKQWLVR 685 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPC----GHiFH~dCI~qWL~r 685 (701)
.....|.+|.|.+++.. ...| .|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtH---FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH---FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTT---SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCc---eeeCCCccCCeeeccccHHHHHh
Confidence 44678999999998887 3444 699999999999983
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.48 E-value=3.7 Score=38.80 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=36.3
Q ss_pred CCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh-----------cCCCCCCCCCCcc
Q 047787 643 SESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV-----------RKNQCPICKMTGL 697 (701)
Q Consensus 643 sesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~-----------rKnSCPICRkeIL 697 (701)
.+.+..++.|.||.+. ++.+..=.|-..||..||.+-|. ..-.||+|+...+
T Consensus 57 ~d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 57 RDSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp BCTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred ecCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH
Confidence 3445567899999873 55333337999999999997653 2335999986543
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=66.03 E-value=0.76 Score=36.95 Aligned_cols=52 Identities=29% Similarity=0.625 Sum_probs=34.3
Q ss_pred CCCCCccccccccccC--CCceeeeCCCCcccHHHHHHHHh-------cCCCCCCCCCCcc
Q 047787 646 PTNNGSCCICQEKYAD--GENLGKLDCGHDFHPNCIKQWLV-------RKNQCPICKMTGL 697 (701)
Q Consensus 646 seedeeCpICLEEFed--gE~Lr~LPCGHiFH~dCI~qWL~-------rKnSCPICRkeIL 697 (701)
...+..|.||...... +..+..-.|.-.||..|+..-|. ..-.|+.|+....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3456789999987543 33222227999999999986432 2345999976543
No 90
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.72 E-value=1.7 Score=36.07 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHH---------hcCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL---------VRKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL---------~rKnSCPICRkeI 696 (701)
...| ||...+....-+..-.|..-||..|+.--. ..+..||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3456 899887644433334799999999984221 2466799997643
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.85 E-value=1.9 Score=37.71 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKMT 695 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRke 695 (701)
...| ||......+..|..-.|.-.||..|+..=+. ....||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3456 8987766665443337999999999865332 23469999854
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.45 E-value=0.58 Score=36.94 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=31.7
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKM 694 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRk 694 (701)
...+..|.||... ++.+..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4556789999874 443333378999999999865542 234988864
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.06 E-value=8.3 Score=34.16 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=22.9
Q ss_pred CCCccccccccc------cCCCceeeeCCCCcccHHHHH
Q 047787 648 NNGSCCICQEKY------ADGENLGKLDCGHDFHPNCIK 680 (701)
Q Consensus 648 edeeCpICLEEF------edgE~Lr~LPCGHiFH~dCI~ 680 (701)
....|.+|+..- ..++.+..-.|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998753 122333334899999999995
No 94
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.48 E-value=5.2 Score=37.27 Aligned_cols=55 Identities=25% Similarity=0.426 Sum_probs=36.7
Q ss_pred ccCCCCCCCCCccccccccccCCCceeeeCCCCcccHHHHHHHH------h-----cCCCCCCCCCCcc
Q 047787 640 RYGSESPTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWL------V-----RKNQCPICKMTGL 697 (701)
Q Consensus 640 KyssesseedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL------~-----rKnSCPICRkeIL 697 (701)
.+..+.+..++.|.||.+- ++.+..=.|-..||.+||.+-+ + ..-.|++|+..-+
T Consensus 48 ~~~~d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 48 DISRDSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CCCBCTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred ccccCCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3444455667789999863 4422222789999999999752 1 2246999987544
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=60.54 E-value=0.53 Score=37.57 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=32.3
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCCc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRkeI 696 (701)
..+..|.||... ++.+..-.|.-.||..|+.+-|.. .-.||.|....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 456789999874 443333378999999999865542 23599996543
No 96
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=60.15 E-value=5.1 Score=31.13 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=29.0
Q ss_pred ccccccccccCCCceeee--CCCCcccHHHHHHHH----hcCCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKL--DCGHDFHPNCIKQWL----VRKNQCPICK 693 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL----~rKnSCPICR 693 (701)
.|.||...+.+++....- .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999988655533332 488899999975321 2566799986
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=59.88 E-value=2.2 Score=36.85 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCCCcccccccccc-CCCce-eeeCCCCcccHHHHHHHHh--cCCCCCCCCCCc
Q 047787 647 TNNGSCCICQEKYA-DGENL-GKLDCGHDFHPNCIKQWLV--RKNQCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFe-dgE~L-r~LPCGHiFH~dCI~qWL~--rKnSCPICRkeI 696 (701)
..+..|.||...-. +...+ ..-.|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 45678999997532 22222 2227888999999976433 233599997643
No 98
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.39 E-value=4.6 Score=35.51 Aligned_cols=44 Identities=32% Similarity=0.674 Sum_probs=27.8
Q ss_pred CCccccccccccCCCceeeeC--CC-CcccHHHHHHHHh----cCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLD--CG-HDFHPNCIKQWLV----RKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LP--CG-HiFH~dCI~qWL~----rKnSCPICRkeI 696 (701)
...| ||..... ++.+..=. |. ..||..|+. |. .+-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9988653 44222224 66 689999997 43 234699998754
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=56.94 E-value=2.2 Score=39.91 Aligned_cols=46 Identities=22% Similarity=0.554 Sum_probs=30.8
Q ss_pred CCCccccccccccCCC-ceeeeCCCCcccHHHHHHHHh-----cCCCCCCCCC
Q 047787 648 NNGSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWLV-----RKNQCPICKM 694 (701)
Q Consensus 648 edeeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL~-----rKnSCPICRk 694 (701)
....| ||...+.+.. -+..-.|.-.||..|+.--.. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45668 9998875443 233337999999999953211 3456999975
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=55.79 E-value=7.7 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=24.3
Q ss_pred CCCCCccccccccccCCCceeee--CCCCcccHHHHH
Q 047787 646 PTNNGSCCICQEKYADGENLGKL--DCGHDFHPNCIK 680 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~ 680 (701)
......|++|...+.+.+..+.- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45567899999998766543333 689999999974
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=55.64 E-value=3.1 Score=34.74 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=31.8
Q ss_pred CCCCCccccccccc-cCCCceee-eCCCCcccHHHHHHHHh--cCCCCCCCCC
Q 047787 646 PTNNGSCCICQEKY-ADGENLGK-LDCGHDFHPNCIKQWLV--RKNQCPICKM 694 (701)
Q Consensus 646 seedeeCpICLEEF-edgE~Lr~-LPCGHiFH~dCI~qWL~--rKnSCPICRk 694 (701)
...+..|.||.+.- .+...+.. =.|.-.||..|+..-+. ..-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45678899998764 22222222 27999999999975432 2335998865
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=54.82 E-value=1.4 Score=35.91 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=32.3
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMT 695 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRke 695 (701)
...+..|.||.+. ++.+..-.|.-.||..|+.+-|.. .-.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3457789999864 443333378899999999865542 2359999654
No 103
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.91 E-value=3.1 Score=36.50 Aligned_cols=47 Identities=23% Similarity=0.530 Sum_probs=33.0
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMT 695 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRke 695 (701)
...+..|.||... ++.+..-.|--.||..|+.+=|.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4556789999864 443333378889999999876653 2359999853
No 104
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.72 E-value=6.5 Score=32.75 Aligned_cols=45 Identities=31% Similarity=0.666 Sum_probs=28.0
Q ss_pred CCCccccccccccCCCceeeeC--CC-CcccHHHHHHHHh----cCCCCCCCCCCc
Q 047787 648 NNGSCCICQEKYADGENLGKLD--CG-HDFHPNCIKQWLV----RKNQCPICKMTG 696 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LP--CG-HiFH~dCI~qWL~----rKnSCPICRkeI 696 (701)
+...| ||..... ++.+..=. |. ..||..|+. |. .+-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34456 8988643 44211114 66 689999997 44 233599998754
No 105
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=51.62 E-value=3.1 Score=43.50 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHHh-------cCCCCCCCCCCc
Q 047787 647 TNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWLV-------RKNQCPICKMTG 696 (701)
Q Consensus 647 eedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL~-------rKnSCPICRkeI 696 (701)
.....|.+|...|..-.. -.+-.||++||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 445789999999864321 22337999999999987653 234587776554
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.43 E-value=1.5 Score=37.77 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=30.7
Q ss_pred CCccccccccccCC-Cceeee-CCCCcccHHHHHHHHh--------cCCCCCCCCC
Q 047787 649 NGSCCICQEKYADG-ENLGKL-DCGHDFHPNCIKQWLV--------RKNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFedg-E~Lr~L-PCGHiFH~dCI~qWL~--------rKnSCPICRk 694 (701)
+..|.||...-... ..+..- .|...||..|+.+-|. ..-.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 46799999764322 222122 7999999999987654 2345999965
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.05 E-value=1.5 Score=38.14 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCC
Q 047787 646 PTNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKM 694 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRk 694 (701)
..+...|.||...-.....+..=.|...||..|+.+=|.. .-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3456689999986433332222279999999999754442 335999965
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=49.90 E-value=3.9 Score=36.32 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=30.3
Q ss_pred CCccccccccccC-CCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCC
Q 047787 649 NGSCCICQEKYAD-GENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFed-gE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRk 694 (701)
-..|.||.+.-.+ ++.+..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3468899874222 332222279999999999876653 235999985
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=45.67 E-value=11 Score=31.70 Aligned_cols=38 Identities=18% Similarity=0.446 Sum_probs=26.9
Q ss_pred CCCCCCccccccccccCCCcee-eeCCCCcccHHHHHHH
Q 047787 645 SPTNNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQW 682 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qW 682 (701)
.+.+...|.+|...|..-..-. .-.||.+||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3455678999999997543221 2279999999997653
No 110
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.96 E-value=1.9 Score=35.53 Aligned_cols=48 Identities=31% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCCccccccccccCCC-ceeeeCCCCcccHHHHHHHH----hcCCCCCCCCCCc
Q 047787 648 NNGSCCICQEKYADGE-NLGKLDCGHDFHPNCIKQWL----VRKNQCPICKMTG 696 (701)
Q Consensus 648 edeeCpICLEEFedgE-~Lr~LPCGHiFH~dCI~qWL----~rKnSCPICRkeI 696 (701)
....| ||...+.+++ .+..-.|..-||..|+.--- ..+..||.|+...
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 7988765554 33333798999999985421 1344699997643
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.32 E-value=4.9 Score=33.67 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCCccccccccccCCCceeee--CCCCcccHHHHHHHH---------hcCCCCCCCCCCc
Q 047787 648 NNGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWL---------VRKNQCPICKMTG 696 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL---------~rKnSCPICRkeI 696 (701)
....| ||......+..+..= .|..-||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34557 898875555434334 699999999985321 1345699997643
No 112
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=42.56 E-value=24 Score=38.17 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=37.9
Q ss_pred cccccCCCCCCCCCccccccccccCCCceeee--CCCCcccHHHHHHHHh----------cCCCCCCCCCCc
Q 047787 637 TVQRYGSESPTNNGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWLV----------RKNQCPICKMTG 696 (701)
Q Consensus 637 ~~~KyssesseedeeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL~----------rKnSCPICRkeI 696 (701)
....+..+.+.-+..|.||-+. ++.+..= .|...||.+||+.++. .+-.|=+|.-.-
T Consensus 81 ~~~~f~~D~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 81 LDALFLYDDDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp HTTTTCBCSSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred hccCcccCCCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3333444445567789999863 4433333 6999999999999984 234598887553
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.47 E-value=16 Score=30.93 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCCCCCccccccccccCCCceee-eCCCCcccHHHHHHH
Q 047787 644 ESPTNNGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQW 682 (701)
Q Consensus 644 esseedeeCpICLEEFedgE~Lr~-LPCGHiFH~dCI~qW 682 (701)
..+.+...|.+|...|..-..-.. -.||++||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344566789999999976542222 279999999997654
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=42.30 E-value=3.4 Score=34.14 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh---cCCCCCCCCC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV---RKNQCPICKM 694 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~---rKnSCPICRk 694 (701)
.+...| ||...+....-|..-.|..-||..|+.---. .+-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345567 9988765433333347999999999853221 3346999875
No 115
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.59 E-value=4.5 Score=40.88 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=26.8
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhc-----CCCCCCCCCC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-----KNQCPICKMT 695 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-----KnSCPICRke 695 (701)
..|.+|...-..+..+..=.|...||..|+.+=|.. .-.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 368888764333333323379999999999865542 3359999764
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.27 E-value=3.2 Score=35.25 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=27.5
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhc----C-CCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----K-NQCPICKM 694 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----K-nSCPICRk 694 (701)
.|.||...-.....+..=.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46667655333331211178899999999876652 2 46999985
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.15 E-value=11 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=25.2
Q ss_pred CCCCccccccccccC--CCceeeeCCCCcccHHHHH
Q 047787 647 TNNGSCCICQEKYAD--GENLGKLDCGHDFHPNCIK 680 (701)
Q Consensus 647 eedeeCpICLEEFed--gE~Lr~LPCGHiFH~dCI~ 680 (701)
.....|.+|...|.. ........|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457889999999942 3334455899999999953
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.82 E-value=13 Score=33.97 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCCCCccccccccccCCCcee-eeCCCCcccHHHHHHH
Q 047787 645 SPTNNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQW 682 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qW 682 (701)
.+.....|.+|...|..-..-. .-.||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3344568999999997543222 2279999999997544
No 119
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.74 E-value=15 Score=29.42 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=29.3
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
....|..|-+.+...+.+. .-+..||..| ..|-.|++.+..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCC
Confidence 3467999998888666443 3467888888 568888877653
No 120
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=40.68 E-value=13 Score=32.98 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCccccccccccCCCceeee--CCCCcccHHHHHHHHh----------cCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKL--DCGHDFHPNCIKQWLV----------RKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~L--PCGHiFH~dCI~qWL~----------rKnSCPICRkeI 696 (701)
...|.||...|.+......- .|.-.||..|+.---. .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999998665443333 5889999999852210 344699997643
No 121
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.64 E-value=18 Score=29.71 Aligned_cols=42 Identities=31% Similarity=0.546 Sum_probs=29.8
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.....|..|-..+...+.+. --+..||..| ..|-.|++.+..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCC
Confidence 34578999999887766443 3467899888 567788776543
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=40.62 E-value=7.2 Score=34.72 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=22.7
Q ss_pred CccccccccccC-------CCceeeeCCCCcccHHHHHHH
Q 047787 650 GSCCICQEKYAD-------GENLGKLDCGHDFHPNCIKQW 682 (701)
Q Consensus 650 eeCpICLEEFed-------gE~Lr~LPCGHiFH~dCI~qW 682 (701)
..|.||+..-.. ++.+..-.|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 232333379999999999765
No 123
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.12 E-value=12 Score=36.44 Aligned_cols=34 Identities=18% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCccccccccccCCCceee-eCCCCcccHHHHHHH
Q 047787 649 NGSCCICQEKYADGENLGK-LDCGHDFHPNCIKQW 682 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~-LPCGHiFH~dCI~qW 682 (701)
+..|.+|...|..-..-.. -.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4789999999975432222 279999999997543
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.85 E-value=17 Score=30.77 Aligned_cols=37 Identities=22% Similarity=0.511 Sum_probs=26.1
Q ss_pred CCCCCCccccccccccCCCcee-eeCCCCcccHHHHHH
Q 047787 645 SPTNNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQ 681 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~q 681 (701)
.+.+...|.+|...|..-..-. .-.||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3455678999999996543211 227999999999654
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.26 E-value=17 Score=31.19 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCCCccccccccccCCCc-eeeeCCCCcccHHHHHHHH
Q 047787 647 TNNGSCCICQEKYADGEN-LGKLDCGHDFHPNCIKQWL 683 (701)
Q Consensus 647 eedeeCpICLEEFedgE~-Lr~LPCGHiFH~dCI~qWL 683 (701)
.+...|.+|...|..-.. -..-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 445679999999975432 1223799999999976653
No 126
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.38 E-value=15 Score=30.99 Aligned_cols=33 Identities=27% Similarity=0.675 Sum_probs=26.3
Q ss_pred CCCCccccccccccCCCceeeeCC-CCcccHHHHHHHH
Q 047787 647 TNNGSCCICQEKYADGENLGKLDC-GHDFHPNCIKQWL 683 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPC-GHiFH~dCI~qWL 683 (701)
++..-|.||.++ ..++.+.| +-+||..|.++.-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 445669999987 34778899 8899999988764
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.32 E-value=14 Score=36.50 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=25.7
Q ss_pred CCCccccccccccCCCcee-eeCCCCcccHHHHHHH
Q 047787 648 NNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQW 682 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qW 682 (701)
+...|.+|...|..-..-. .-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3568999999997543222 2379999999997654
No 128
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.88 E-value=21 Score=29.41 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=29.4
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
....|.-|-+.+...+.+.. -+..||.+| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 45679999998877664433 467888888 56888887764
No 129
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=36.83 E-value=3.7 Score=37.73 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=29.2
Q ss_pred CCCccccccccccCCCce-eeeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 047787 648 NNGSCCICQEKYADGENL-GKLDCGHDFHPNCIKQWLVRKNQCPICKM 694 (701)
Q Consensus 648 edeeCpICLEEFedgE~L-r~LPCGHiFH~dCI~qWL~rKnSCPICRk 694 (701)
....|.+|...|..-..- ..-.||.+||..|..........|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 446799999998653321 12379999999997766555556666643
No 130
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.38 E-value=5.9 Score=33.56 Aligned_cols=45 Identities=29% Similarity=0.531 Sum_probs=29.8
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhc-----CCCCCCCCC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-----KNQCPICKM 694 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-----KnSCPICRk 694 (701)
..|.||...-..++.+..=.|...||..|+.+=|.. .-.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368888865333442222278999999999865542 335999975
No 131
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.37 E-value=48 Score=29.58 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCCccccccccccCCCc----eeeeCCCCcccHHHHHHHHh-cCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGEN----LGKLDCGHDFHPNCIKQWLV-RKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~----Lr~LPCGHiFH~dCI~qWL~-rKnSCPICRkeIL 697 (701)
....|-||-+++-.... +..-.|+--.|+.|+.-=.+ .+..||.|++..-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999998644321 22237888899999876554 5667999998753
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.06 E-value=11 Score=30.24 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=32.5
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccH-HHHHHHHhcCCCCCCCCCCccccCC
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHP-NCIKQWLVRKNQCPICKMTGLARIH 701 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~-dCI~qWL~rKnSCPICRkeILptLh 701 (701)
..-..|..|...+.... . ...=+..||. .|..+- ....|-.|...+..+++
T Consensus 25 ~~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~~~~~~ 76 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAM--FGPKGFGRGGAESHTFK 76 (76)
T ss_dssp TTTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHH--SSCCCSSCCCSSSCCCC
T ss_pred CCCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHH--hCccCCCcCCceeeeeC
Confidence 45667888888776653 1 2334667888 587553 34568888776665543
No 133
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=35.02 E-value=6.3 Score=32.65 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=28.1
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhc-----CCCCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR-----KNQCPICKMT 695 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r-----KnSCPICRke 695 (701)
.|.||...-..++.+..=.|...||..|+.+=|.. .-.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 46677754222331111168899999999865542 3369999864
No 134
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.82 E-value=30 Score=28.63 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
.....|.-|.+.+.. .. +..-+..||.+| ..|-.|++.|..
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCCC
Confidence 345679999988875 22 335678899888 568888887653
No 135
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.20 E-value=26 Score=28.34 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=27.0
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
....|.-|-+.+... . +.--+..||..| ..|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~-~--~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-F--VKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS-C--EECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCc-E--EEECcceeCcCc--------CeeCCCCCCCC
Confidence 356799998887753 2 334577888888 46888877653
No 136
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.98 E-value=23 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCCCccccccccccCCCcee-eeCCCCcccHHHHHHH
Q 047787 646 PTNNGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQW 682 (701)
Q Consensus 646 seedeeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~qW 682 (701)
..+...|.+|...|..-..-. .-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 345568999999987643221 2279999999997543
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.00 E-value=25 Score=29.01 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCccccccccccCCCcee-eeCCCCcccHHHHHH
Q 047787 649 NGSCCICQEKYADGENLG-KLDCGHDFHPNCIKQ 681 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr-~LPCGHiFH~dCI~q 681 (701)
+..|.+|...|..-..-. .-.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 358999999987543211 227999999999754
No 138
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.43 E-value=17 Score=29.75 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=29.5
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPIC 692 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPIC 692 (701)
..|--|+..|.+......-.|++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998643323344899999999943222345679988
No 139
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=24 Score=29.32 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
....|..|-+.+. ++. +..-+..||..| ..|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPF--LVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCE--EEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceE--EEECCccccccC--------CccCCCCCCCC
Confidence 3456777777764 332 224466777777 45777776654
No 140
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=29.91 E-value=23 Score=31.82 Aligned_cols=43 Identities=30% Similarity=0.696 Sum_probs=27.4
Q ss_pred CCCCCCccccccccccCCCceeee---CCCCcccHHHHHHHHhc----CCCCCCCC
Q 047787 645 SPTNNGSCCICQEKYADGENLGKL---DCGHDFHPNCIKQWLVR----KNQCPICK 693 (701)
Q Consensus 645 sseedeeCpICLEEFedgE~Lr~L---PCGHiFH~dCI~qWL~r----KnSCPICR 693 (701)
....++.|.+|.+ .++ +..- .|-..||..|+. |.. +-.||.|+
T Consensus 11 ~~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 3456778999984 244 2222 388899999997 442 22477554
No 141
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.57 E-value=5.2 Score=35.07 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=28.8
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCC
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMT 695 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRke 695 (701)
.|.||...-.+...+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57788765433332222278999999999865542 2358888653
No 142
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.81 E-value=24 Score=31.06 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCCCccccccccccCCCceeeeCCCCcccHHHHHHHHh
Q 047787 647 TNNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV 684 (701)
Q Consensus 647 eedeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~ 684 (701)
..-..|..|...+..++.. .+.=+..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 4455666776666444322 223456677777766654
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=28.57 E-value=7.2 Score=31.34 Aligned_cols=42 Identities=33% Similarity=0.688 Sum_probs=26.1
Q ss_pred CCccccccccccCCCceeeeC--CC-CcccHHHHHHHHhc----CCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKLD--CG-HDFHPNCIKQWLVR----KNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LP--CG-HiFH~dCI~qWL~r----KnSCPICRk 694 (701)
...| ||.... .++.+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3446 998864 243221114 66 689999997 432 335999965
No 144
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.55 E-value=22 Score=33.69 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCCccccccccccC--CCceeeeCCCCcccHHHHHHHHhcCC--CCCCCCC
Q 047787 648 NNGSCCICQEKYAD--GENLGKLDCGHDFHPNCIKQWLVRKN--QCPICKM 694 (701)
Q Consensus 648 edeeCpICLEEFed--gE~Lr~LPCGHiFH~dCI~qWL~rKn--SCPICRk 694 (701)
....|.+|...|.. +.......|.|.+|..|= .|+.... .|-+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 56889999998644 334445589999999996 2433221 3766654
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.17 E-value=46 Score=32.08 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=36.3
Q ss_pred cccCCCCCCCCCccccccccccCCCceeee---CCCCcccHHHHHHHHhc----------CCCCCCCCCCc
Q 047787 639 QRYGSESPTNNGSCCICQEKYADGENLGKL---DCGHDFHPNCIKQWLVR----------KNQCPICKMTG 696 (701)
Q Consensus 639 ~KyssesseedeeCpICLEEFedgE~Lr~L---PCGHiFH~dCI~qWL~r----------KnSCPICRkeI 696 (701)
..|..+.+.-+..|.||-+. ++ +..- .|...||.+||+.++.. .-.|=+|.-..
T Consensus 69 ~~f~~DeDG~~~yC~wC~~G---g~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 69 CAYQYDDDGYQSYCTICCGG---RE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp HTTCBCTTSSBSSCTTTSCC---SE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred cccccCCCCCcceeeEecCC---Ce-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 33444555567889999863 33 3222 48899999999998763 22488886543
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.75 E-value=44 Score=26.14 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
...|.-|.+.+...+.+ +..-+..||..| ..|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCC
Confidence 35677777777654322 223466777777 45777766554
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.72 E-value=39 Score=27.20 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
...|..|.+.+...+.+ +..-+..||..| ..|-.|++.+..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCC
Confidence 45788998888765543 223467888888 568888877643
No 148
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.96 E-value=46 Score=27.09 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
....|.-|-+.+. +.. +.--+..||.+| ..|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQP--LIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCC--CCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceE--EEECcceeCCCC--------CEeCCCCCccC
Confidence 3466888888776 332 224466777777 46777777654
No 149
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.12 E-value=39 Score=26.33 Aligned_cols=36 Identities=19% Similarity=0.543 Sum_probs=18.4
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
..|..|.+.+... . +..-+..||..| ..|-.|++.+
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~C--------F~C~~C~~~L 41 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKEC--------FVCTACRKQL 41 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTT--------SBCSSSCCBC
T ss_pred CCCcccCCeeccc-e--EEECccccCCCC--------CccCCCCCcC
Confidence 4566666655432 1 223455666665 3455665554
No 150
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.09 E-value=12 Score=34.11 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=16.9
Q ss_pred eeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 667 KLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 667 ~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
+..||+.|. .=+.....||.|+.+-.
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 457999991 11234467999998643
No 151
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.03 E-value=46 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.500 Sum_probs=23.9
Q ss_pred CCccccccccccC--CCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYAD--GENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFed--gE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
...|.-|-+.+.. .+.+ +..-+..||.+| ..|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCC
Confidence 3567777777764 2222 223567777777 45777776653
No 152
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.68 E-value=42 Score=26.28 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=11.6
Q ss_pred CccccccccccCCCceeeeCCCCcccHHH
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNC 678 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dC 678 (701)
..|..|-+.+.. +. +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C 31 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV--IKAMNNSWHPEC 31 (70)
T ss_dssp SBCSSSCCBCCS-CC--EEETTEEECTTT
T ss_pred CcCccCCCEecc-eE--EEECcccccccC
Confidence 345555555542 21 122344555555
No 153
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.60 E-value=49 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=17.4
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHh
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLV 684 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~ 684 (701)
.-..|..|...+.... ....=+..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQH--FYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSC--EEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCc--CEeeCCeEECHHHHHHHHc
Confidence 3445666665553221 1223455666666665554
No 154
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.43 E-value=28 Score=31.08 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
....|.-|-..+.+...+ .--+..||..| ..|-.|++.+.
T Consensus 60 ~~~~C~~C~~~I~~~~~v--~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLL--YAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEE--EETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEE--EeCCcEEcccc--------cCcCcCCCccc
Confidence 356899999988765423 24578899998 57899988874
No 155
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.20 E-value=51 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=34.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
-..|..|...+.+........=+..||..|..+-+..+..|-.|.+.|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 35688888777531111133456789999998877766689999988764
No 156
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.03 E-value=40 Score=26.38 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=23.7
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
..|..|.+.+...+.+ +..-+..||..| ..|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC--------CcccccCCccC
Confidence 4677777777665322 122456777777 45777776654
No 157
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.36 E-value=30 Score=31.42 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=10.5
Q ss_pred ccHHHHHHHHh
Q 047787 674 FHPNCIKQWLV 684 (701)
Q Consensus 674 FH~dCI~qWL~ 684 (701)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 158
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.33 E-value=30 Score=31.36 Aligned_cols=11 Identities=45% Similarity=1.325 Sum_probs=10.5
Q ss_pred ccHHHHHHHHh
Q 047787 674 FHPNCIKQWLV 684 (701)
Q Consensus 674 FH~dCI~qWL~ 684 (701)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999997
No 159
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.42 E-value=53 Score=26.00 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=28.1
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
....|.-|.+.+...+.+. ..-+..||..| ..|-.|++.+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCCC
Confidence 3567899988887544331 23466788888 568888777643
No 160
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.39 E-value=40 Score=26.31 Aligned_cols=10 Identities=20% Similarity=0.757 Sum_probs=4.7
Q ss_pred cccccccccc
Q 047787 651 SCCICQEKYA 660 (701)
Q Consensus 651 eCpICLEEFe 660 (701)
.|.-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 4555554443
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.12 E-value=45 Score=27.63 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=14.3
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHH
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNC 678 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dC 678 (701)
...|.-|-+.+...+.+ ..-+..||..|
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCC
Confidence 34566666665544422 23445555555
No 162
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.09 E-value=51 Score=26.39 Aligned_cols=25 Identities=20% Similarity=0.554 Sum_probs=10.9
Q ss_pred ccccccccccCCCceeeeCCCCcccHHH
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNC 678 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dC 678 (701)
.|.-|-..+.. .. +..-+..||.+|
T Consensus 7 ~C~~C~~~I~~-~~--v~a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITG-RV--LEAGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSS-CC--BCCSSCCBCTTT
T ss_pred CcccCCCEecC-ee--EEeCCCCCCCCc
Confidence 45555554443 11 123344555555
No 163
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=21.61 E-value=11 Score=30.14 Aligned_cols=42 Identities=33% Similarity=0.710 Sum_probs=25.2
Q ss_pred CCccccccccccCCCceeeeC--CC-CcccHHHHHHHHhc----CCCCCCCCC
Q 047787 649 NGSCCICQEKYADGENLGKLD--CG-HDFHPNCIKQWLVR----KNQCPICKM 694 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LP--CG-HiFH~dCI~qWL~r----KnSCPICRk 694 (701)
...| ||..... ++.+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3445 9988642 43111114 55 679999997 442 335999865
No 164
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.32 E-value=56 Score=25.22 Aligned_cols=42 Identities=21% Similarity=0.520 Sum_probs=29.7
Q ss_pred CCCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCccc
Q 047787 648 NNGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGLA 698 (701)
Q Consensus 648 edeeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeILp 698 (701)
....|.-|...+...+.+.. .-+..||..|. .|-.|++.+..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 35679999998887664322 34667898884 68888887654
No 165
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.20 E-value=47 Score=26.54 Aligned_cols=40 Identities=18% Similarity=0.541 Sum_probs=26.5
Q ss_pred CCccccccccccC--CCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCcc
Q 047787 649 NGSCCICQEKYAD--GENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTGL 697 (701)
Q Consensus 649 deeCpICLEEFed--gE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeIL 697 (701)
...|..|-+.+.. ...+ +.--+..||.+| ..|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCccc--------CChhhCCCcCC
Confidence 3568889888775 2222 234567888888 46778877654
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.75 E-value=27 Score=28.20 Aligned_cols=38 Identities=24% Similarity=0.548 Sum_probs=21.1
Q ss_pred CCccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 649 NGSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 649 deeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
...|..|-+.+...+.+ ..-+..||..| ..|-.|++.+
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~C--------F~C~~C~~~L 44 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCC--------FLCMVCRKNL 44 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSS--------EECSSSCCEE
T ss_pred CCcCcCcCccccCceeE--EeCCccccccc--------CccCCCCCCC
Confidence 35577777766555532 22455666666 3466666554
No 167
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.23 E-value=38 Score=32.35 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=14.5
Q ss_pred eeeCCCCcccHHHHHHHHhcCCCCCCCCCC
Q 047787 666 GKLDCGHDFHPNCIKQWLVRKNQCPICKMT 695 (701)
Q Consensus 666 r~LPCGHiFH~dCI~qWL~rKnSCPICRke 695 (701)
.+..|||+|-. ..-..||+|..+
T Consensus 140 ~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred EeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34568887752 222379999864
No 168
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.11 E-value=8.5 Score=34.28 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=30.2
Q ss_pred CccccccccccCCCceeeeCCCCcccHHHHHHHHhc----CCCCCCCCCC
Q 047787 650 GSCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVR----KNQCPICKMT 695 (701)
Q Consensus 650 eeCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~r----KnSCPICRke 695 (701)
..|.||...-..++.+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 368888776444443333379999999999864442 2349988653
No 169
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.03 E-value=52 Score=26.44 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=16.5
Q ss_pred ccccccccccCCCceeeeCCCCcccHHHHHHHHhcCCCCCCCCCCc
Q 047787 651 SCCICQEKYADGENLGKLDCGHDFHPNCIKQWLVRKNQCPICKMTG 696 (701)
Q Consensus 651 eCpICLEEFedgE~Lr~LPCGHiFH~dCI~qWL~rKnSCPICRkeI 696 (701)
.|..|-+.+. +.. +..-+..||.+| ..|-.|++.+
T Consensus 17 ~C~~C~~~I~-~~~--~~a~~~~~H~~C--------F~C~~C~~~L 51 (81)
T 1x6a_A 17 FCHGCSLLMT-GPF--MVAGEFKYHPEC--------FACMSCKVII 51 (81)
T ss_dssp BCTTTCCBCC-SCC--BCCTTCCBCTTS--------CBCTTTCCBC
T ss_pred cCccCCCCcC-ceE--EEECCceecccc--------CCccCCCCcc
Confidence 4555555554 221 122345555555 3455555544
Done!