BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047789
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NAW|A Chain A, Enolpyruvyl Transferase
pdb|1NAW|B Chain B, Enolpyruvyl Transferase
Length = 419
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E RN + ++ V ++ +R + +GPL+ARFG+ V LPGGC IG RP
Sbjct: 65 E---RNGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 26 QIREAETLTITGPTQLSGHVPISGSKXXXX-XXXXXXXXXXXXXXXHNVPTGLSDTKTML 84
Q E + + G QL+G V + G+K NVP LSD T+
Sbjct: 21 QSNAMEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPN-LSDVFTIN 79
Query: 85 SILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGL 144
+L+ L A + F N E+ V+ G ++ +RK+R V+GPLLAR G A V L
Sbjct: 80 EVLKYLNADVSF--VNDEVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVAL 137
Query: 145 PGGCDIGERPVDLYVRGLRALGAAVEI 171
PGGC IG RPVDL+++G A+GA V+I
Sbjct: 138 PGGCAIGSRPVDLHLKGFEAMGAVVKI 164
>pdb|1UAE|A Chain A, Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
Transferase
Length = 419
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+K NVP L D T + +L L
Sbjct: 2 DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDVDTSMKLLSQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GAK+E RN + ++ V ++ +R + +GPL+ARFG+ V LPGGC I
Sbjct: 61 GAKVE---RNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHISGLEQLGATIKL 138
>pdb|3ISS|A Chain A, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|B Chain B, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|C Chain C, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|D Chain D, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|E Chain E, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|F Chain F, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|G Chain G, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|H Chain H, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|I Chain I, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|J Chain J, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|K Chain K, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|L Chain L, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
Length = 418
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+K NVP L D T + +L L
Sbjct: 2 DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDVDTSMKLLSQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GAK+E R+ + ++ V ++ +R + +GPL+ARFG+ V LPGGC I
Sbjct: 61 GAKVE---RDGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHISGLEQLGATIKL 138
>pdb|1EJC|A Chain A, Crystal Structure Of Unliganded Mura (Type2)
pdb|1EJD|A Chain A, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EJD|B Chain B, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EYN|A Chain A, Structure Of Mura Liganded With The Extrinsic Fluorescence
Probe Ans
pdb|1YBG|A Chain A, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|B Chain B, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|C Chain C, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|D Chain D, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|3KQA|A Chain A, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|B Chain B, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|C Chain C, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|D Chain D, Mura Dead-End Complex With Terreic Acid
pdb|3LTH|A Chain A, E. Cloacae Mura Dead-End Complex With Unag And Fosfomycin
pdb|3SPB|A Chain A, Unliganded E. Cloacae Mura
pdb|3SPB|B Chain B, Unliganded E. Cloacae Mura
pdb|3SPB|C Chain C, Unliganded E. Cloacae Mura
pdb|3SPB|D Chain D, Unliganded E. Cloacae Mura
pdb|3SWQ|A Chain A, E. Cloacae Mura In Complex With Enolpyruvyl-Unag
pdb|3UPK|A Chain A, E. Cloacae Mura In Complex With Unag
Length = 419
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E R + ++ V ++ +R + +GPL+ARFG+ V LPGGC IG RP
Sbjct: 65 E---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|1Q3G|A Chain A, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|B Chain B, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|C Chain C, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|D Chain D, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|E Chain E, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|F Chain F, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|G Chain G, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|H Chain H, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|I Chain I, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|J Chain J, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|K Chain K, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|L Chain L, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|W Chain W, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|X Chain X, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Y Chain Y, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Z Chain Z, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
Length = 419
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E R + ++ V ++ +R + +GPL+ARFG+ V LPGGC IG RP
Sbjct: 65 E---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|2Z2C|A Chain A, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|B Chain B, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|C Chain C, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|D Chain D, Mura Inhibited By Unag-Cnicin Adduct
Length = 423
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+K NVP L D T + +L L
Sbjct: 2 DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDVDTSMKLLSQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GAK+E R + ++ V ++ +R + +GPL+ARFG+ V LPGGC I
Sbjct: 61 GAKVE---RXGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHISGLEQLGATIKL 138
>pdb|3KQJ|A Chain A, Mura Binary Complex With Udp-N-Acetylglucosamine
pdb|3KR6|A Chain A, Mura Dead-End Complex With Fosfomycin
Length = 419
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+K NVP L D T + +L L
Sbjct: 2 DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDVDTSMKLLSQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GAK+E R + ++ V ++ +R + +GPL+ARFG+ V LPGGC I
Sbjct: 61 GAKVE---RXGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHISGLEQLGATIKL 138
>pdb|1A2N|A Chain A, Structure Of The C115a Mutant Of Mura Complexed With The
Fluorinated Analog Of The Reaction Tetrahedral
Intermediate
Length = 419
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+K NVP L D T + +L L
Sbjct: 2 DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDVDTSMKLLSQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GAK+E RN + ++ V ++ +R + +GPL+ARFG+ V LPGG I
Sbjct: 61 GAKVE---RNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGATI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHISGLEQLGATIKL 138
>pdb|1DLG|A Chain A, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1DLG|B Chain B, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1RYW|A Chain A, C115s Mura Liganded With Reaction Products
pdb|1RYW|B Chain B, C115s Mura Liganded With Reaction Products
pdb|1RYW|C Chain C, C115s Mura Liganded With Reaction Products
pdb|1RYW|D Chain D, C115s Mura Liganded With Reaction Products
pdb|1RYW|E Chain E, C115s Mura Liganded With Reaction Products
pdb|1RYW|F Chain F, C115s Mura Liganded With Reaction Products
pdb|1RYW|G Chain G, C115s Mura Liganded With Reaction Products
pdb|1RYW|H Chain H, C115s Mura Liganded With Reaction Products
Length = 419
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E R + ++ V ++ +R + +GPL+ARFG+ V LPGG IG RP
Sbjct: 65 E---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGSAIGARP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|3VCY|A Chain A, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|B Chain B, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|C Chain C, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|D Chain D, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin
Length = 430
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 41 LSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKIEFNERN 100
LSG V ISG+K NVP L D T + +L+ LGA++ RN
Sbjct: 13 LSGEVTISGAKNAALPILFASLLAEEPVEVANVPK-LRDVDTTMELLKRLGAEVS---RN 68
Query: 101 KEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVR 160
+ ++ GV ++ +R + +GPL+ARFG+ V LPGGC IG RPVDL++
Sbjct: 69 GSVHIDASGVNDFCAPYDLVKTMRASIWALGPLVARFGKGQVSLPGGCAIGARPVDLHIH 128
Query: 161 GLRALGAAVEI 171
GL LGA +++
Sbjct: 129 GLEQLGATIKL 139
>pdb|3SU9|A Chain A, E. Cloacae Mura In Complex With Udp-N-Acetylmuramic Acid
And Covalent Adduct Of Pep With Cys115
pdb|3SWI|A Chain A, E. Cloacae Mura In Complex With
Enolpyruvyl-Udp-N-Acetylgalactosamine And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E R + ++ V ++ +R + +GPL+ARFG+ V LPGG IG RP
Sbjct: 65 E---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGXAIGARP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|3V4T|A Chain A, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|B Chain B, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|C Chain C, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|D Chain D, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|E Chain E, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|F Chain F, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|G Chain G, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|H Chain H, E. Cloacae C115d Mura Liganded With Unag
pdb|3V5V|A Chain A, Unliganded E.Cloacae C115d Mura
pdb|3V5V|B Chain B, Unliganded E.Cloacae C115d Mura
pdb|3V5V|C Chain C, Unliganded E.Cloacae C115d Mura
pdb|3V5V|D Chain D, Unliganded E.Cloacae C115d Mura
Length = 419
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E R + ++ V ++ +R + +GPL+ARFG+ V LPGG IG RP
Sbjct: 65 E---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGDAIGARP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|3SWD|A Chain A, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|B Chain B, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|C Chain C, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|D Chain D, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|E Chain E, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|F Chain F, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|G Chain G, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|H Chain H, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|I Chain I, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|J Chain J, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|K Chain K, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|L Chain L, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
Length = 418
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+K NVP L D T + +L L
Sbjct: 2 DKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDVDTSMKLLSQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GAK+E R + ++ V ++ +R + +GPL+ARFG+ V LPGG I
Sbjct: 61 GAKVE---RXGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGXTI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHISGLEQLGATIKL 138
>pdb|2YVW|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
1-Carboxyvinyltransferase From Aquifex Aeolicus Vf5
Length = 425
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 23 QTTQIREAETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKT 82
TT + I G L+G V ISG+K NVP L D +
Sbjct: 3 NTTLYTYRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPD-LLDVRN 61
Query: 83 MLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGE-------MRKIRGGFFVIGPLLA 135
L +LR LGA++EF N + +N P + +R++R +GPLL
Sbjct: 62 TLLLLRELGAELEF--LNNTVFIN--------PSINSFITNQEIIRRMRASVLSLGPLLG 111
Query: 136 RFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI 171
RFG AVVGLPGGC IG RP+D +++ + GA VE+
Sbjct: 112 RFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEV 147
>pdb|3SWA|A Chain A, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
pdb|3SWA|B Chain B, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ GPT+L G V ISG+K NVP L D T + +L LG K+
Sbjct: 6 VQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
E R + ++ V ++ +R + +GPL+ARFG+ V LPGG IG P
Sbjct: 65 E---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGXAIGAAP 121
Query: 155 VDLYVRGLRALGAAVEI 171
VDL++ GL LGA +++
Sbjct: 122 VDLHIFGLEKLGAEIKL 138
>pdb|2RL1|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
Transferase From Haemophilus Influenzae In Complex With
Udp-N-Acetylglucosamine
pdb|2RL2|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine Enolpyruvyl
Transferase From Haemophilus Influenzae In Complex With
Udp-n-acetylglucosamine And Fosfomycin
Length = 424
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ G ++LSG V ISG+K NVP L D +T L ILR LG +
Sbjct: 6 VYGQSRLSGSVNISGAKNAALPILFAAILATEPVKLTNVPE-LKDIETTLKILRQLGVVV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
+ + +L++ + ++ +R + + PL+ARF + V LPGGC IG RP
Sbjct: 65 D-RDATGAVLLDASNINHFTAPYELVKTMRASIWALAPLVARFHQGQVSLPGGCSIGARP 123
Query: 155 VDLYVRGLRALGAAV 169
VDL++ GL LGA +
Sbjct: 124 VDLHISGLEKLGADI 138
>pdb|3SG1|A Chain A, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|B Chain B, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|C Chain C, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
pdb|3SG1|D Chain D, 2.6 Angstrom Crystal Structure Of Udp-N-Acetylglucosamine
1- Carboxyvinyltransferase 1 (Mura1) From Bacillus
Anthracis
Length = 458
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 26 QIREAETLTITGPTQLSGHVPISGSKXXXX-XXXXXXXXXXXXXXXHNVPTGLSDTKTML 84
Q E + + G +L+G V + G+K VP LSD T+
Sbjct: 21 QSNAMEKIIVRGGKRLNGTVRVEGAKNAVLPIIAAALLASDGKNVLSEVPV-LSDVYTIN 79
Query: 85 SILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGL 144
+LR L A++ F N ++ ++ E +RK+R V+GPLLAR G A + L
Sbjct: 80 EVLRHLNAEVVF--ENNQVTIDASKELNIEAPFEYVRKMRASVQVMGPLLARNGRARIAL 137
Query: 145 PGGCDIGERPVDLYVRGLRALGAAVEI 171
PGGC IG RP+D +++G A+GA V++
Sbjct: 138 PGGCAIGSRPIDQHLKGFEAMGAKVQV 164
>pdb|3SWG|A Chain A, Aquifex Aeolicus Mura In Complex With Udp-N-Acetylmuramic
Acid And Covalent Adduct Of Pep With Cys124
Length = 425
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 23 QTTQIREAETLTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKT 82
TT + I G L+G V ISG+K NVP L D +
Sbjct: 3 NTTLYTYRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPD-LLDVRN 61
Query: 83 MLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGE-------MRKIRGGFFVIGPLLA 135
L +LR LGA++EF N + +N P + +R++R +GPLL
Sbjct: 62 TLLLLRELGAELEF--LNNTVFIN--------PSINSFITNQEIIRRMRASVLSLGPLLG 111
Query: 136 RFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI 171
RFG AVVGLPGG IG RP+D +++ + GA VE+
Sbjct: 112 RFGRAVVGLPGGXSIGARPIDQHLKFFKEAGADVEV 147
>pdb|3SWE|A Chain A, Haemophilus Influenzae Mura In Complex With
Udp-N-Acetylmuramic Acid And Covalent Adduct Of Pep With
Cys117
Length = 424
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 35 ITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGAKI 94
+ G ++LSG V ISG+K NVP L D +T L ILR LG +
Sbjct: 6 VYGQSRLSGSVNISGAKNAALPILFAAILATEPVKLTNVPE-LKDIETTLKILRQLGVVV 64
Query: 95 EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154
+ + +L++ + ++ +R + + PL+ARF + V LPGG IG RP
Sbjct: 65 D-RDATGAVLLDASNINHFTAPYELVKTMRASIWALAPLVARFHQGQVSLPGGXSIGARP 123
Query: 155 VDLYVRGLRALGAAV 169
VDL++ GL LGA +
Sbjct: 124 VDLHISGLEKLGADI 138
>pdb|4FQD|A Chain A, Crystal Structure Of The Enolpyruvyl Transferase Niko From
Streptomyces Tendae
pdb|4FQD|B Chain B, Crystal Structure Of The Enolpyruvyl Transferase Niko From
Streptomyces Tendae
Length = 479
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 33 LTITGPTQLSGHVPISGSKXXXXXXXXXXXXXXXXXXXHNVPTGLSDTKTMLSILRLLGA 92
L I G +LSG V SG K N P + +T + I R GA
Sbjct: 16 LEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPD-IVETAVLGEIFRAAGA 74
Query: 93 KIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGE 152
++ ++ V+ RAE + +I G +++ L++R G A + GGC IGE
Sbjct: 75 HAHYDGADETFTVDASAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSASGGCPIGE 134
Query: 153 RP 154
P
Sbjct: 135 GP 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,420,508
Number of Sequences: 62578
Number of extensions: 159765
Number of successful extensions: 266
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 22
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)