Query 047789
Match_columns 171
No_of_seqs 107 out of 1184
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0128 AroA 5-enolpyruvylshik 100.0 2.1E-28 4.5E-33 214.3 14.4 130 37-170 9-140 (428)
2 COG0766 MurA UDP-N-acetylgluco 99.9 1.5E-26 3.4E-31 199.0 15.5 138 30-170 1-139 (421)
3 PRK09369 UDP-N-acetylglucosami 99.9 3E-25 6.4E-30 193.6 17.1 139 30-170 1-139 (417)
4 PRK11861 bifunctional prephena 99.9 3.5E-25 7.5E-30 204.3 13.8 140 27-170 237-377 (673)
5 PLN02338 3-phosphoshikimate 1- 99.9 1.3E-24 2.9E-29 191.1 15.8 137 33-170 4-147 (443)
6 PRK12830 UDP-N-acetylglucosami 99.9 2.7E-24 5.9E-29 187.2 17.3 138 30-170 1-138 (417)
7 PF00275 EPSP_synthase: EPSP s 99.9 9E-25 1.9E-29 191.2 12.6 133 35-170 1-137 (419)
8 TIGR01072 murA UDP-N-acetylglu 99.9 1.3E-23 2.7E-28 182.7 17.2 138 30-170 1-138 (416)
9 TIGR01356 aroA 3-phosphoshikim 99.9 4.5E-23 9.7E-28 179.0 14.6 121 43-170 1-123 (409)
10 cd01555 UdpNAET UDP-N-acetylgl 99.9 1.7E-22 3.7E-27 174.8 15.9 127 41-170 1-128 (400)
11 PRK02427 3-phosphoshikimate 1- 99.9 4.9E-22 1.1E-26 173.6 15.2 131 34-170 6-138 (435)
12 PRK11860 bifunctional 3-phosph 99.9 8.2E-22 1.8E-26 181.6 16.3 137 30-170 4-141 (661)
13 PRK14806 bifunctional cyclohex 99.9 1.5E-21 3.3E-26 181.1 16.2 149 19-170 286-440 (735)
14 cd01556 EPSP_synthase EPSP syn 99.9 9.5E-21 2.1E-25 163.6 15.4 126 41-170 1-127 (409)
15 cd01554 EPT-like Enol pyruvate 99.8 3.8E-20 8.3E-25 160.5 15.2 126 41-170 1-128 (408)
16 COG0128 AroA 5-enolpyruvylshik 99.7 3.5E-16 7.6E-21 137.5 12.0 133 32-171 220-360 (428)
17 KOG0692 Pentafunctional AROM p 99.6 1.3E-15 2.7E-20 134.2 10.5 129 41-171 105-242 (595)
18 PF00275 EPSP_synthase: EPSP s 99.4 2.1E-13 4.5E-18 119.5 7.3 132 32-171 216-357 (419)
19 TIGR01356 aroA 3-phosphoshikim 99.4 2.5E-12 5.4E-17 111.8 11.5 133 32-170 204-342 (409)
20 PRK11861 bifunctional prephena 99.4 4.9E-12 1.1E-16 117.2 13.9 132 33-171 464-607 (673)
21 cd01554 EPT-like Enol pyruvate 99.4 1.2E-11 2.5E-16 107.4 14.0 133 31-170 205-344 (408)
22 cd01556 EPSP_synthase EPSP syn 99.3 2.3E-11 5E-16 105.2 13.5 133 31-170 206-344 (409)
23 PRK11860 bifunctional 3-phosph 99.3 2.5E-11 5.5E-16 112.3 12.1 131 33-170 226-366 (661)
24 TIGR01072 murA UDP-N-acetylglu 99.3 9.3E-11 2E-15 102.0 14.8 132 32-170 213-347 (416)
25 PRK09369 UDP-N-acetylglucosami 99.3 9E-11 1.9E-15 102.6 14.4 130 32-170 214-347 (417)
26 PLN02338 3-phosphoshikimate 1- 99.3 4E-11 8.6E-16 105.7 11.9 131 33-170 232-377 (443)
27 cd01555 UdpNAET UDP-N-acetylgl 99.3 1.4E-10 3E-15 100.5 14.2 131 32-170 203-337 (400)
28 PRK12830 UDP-N-acetylglucosami 99.2 3.3E-10 7.1E-15 98.8 14.2 133 31-171 211-346 (417)
29 PRK02427 3-phosphoshikimate 1- 99.2 3.2E-10 6.9E-15 99.2 12.4 132 32-170 222-368 (435)
30 PRK14806 bifunctional cyclohex 99.1 7.7E-10 1.7E-14 103.1 13.4 135 32-170 515-663 (735)
31 cd01553 EPT_RTPC-like This dom 99.0 4.9E-09 1.1E-13 84.3 10.8 121 48-170 7-145 (211)
32 COG0766 MurA UDP-N-acetylgluco 98.9 1.8E-08 3.8E-13 87.8 11.1 129 33-171 145-277 (421)
33 KOG0692 Pentafunctional AROM p 97.2 0.00016 3.5E-09 64.8 2.2 126 43-171 339-477 (595)
34 cd01553 EPT_RTPC-like This dom 96.4 0.092 2E-06 42.0 11.8 43 53-95 95-145 (211)
35 cd00875 RNA_Cyclase_Class_I RN 94.4 0.67 1.4E-05 40.2 11.0 114 54-168 13-143 (341)
36 TIGR03399 RNA_3prim_cycl RNA 3 94.1 0.82 1.8E-05 39.4 10.8 117 53-170 14-147 (326)
37 cd00295 RNA_Cyclase RNA 3' pho 93.5 0.89 1.9E-05 39.4 10.0 115 55-170 14-145 (338)
38 TIGR03400 18S_RNA_Rcl1p 18S rR 93.4 1.5 3.4E-05 38.2 11.4 114 56-170 11-144 (360)
39 PF01137 RTC: RNA 3'-terminal 93.3 0.31 6.6E-06 40.0 6.5 114 56-170 15-145 (228)
40 KOG3980 RNA 3'-terminal phosph 93.2 0.51 1.1E-05 40.9 7.9 114 55-170 16-147 (361)
41 cd00874 RNA_Cyclase_Class_II R 92.8 1.7 3.8E-05 37.4 10.7 116 54-170 13-145 (326)
42 PRK04204 RNA 3'-terminal-phosp 91.3 3.4 7.3E-05 36.0 10.8 119 51-170 14-149 (343)
43 COG0430 RCL1 RNA 3'-terminal p 90.8 2 4.3E-05 37.3 8.8 113 56-170 19-149 (341)
44 COG0547 TrpD Anthranilate phos 79.8 3 6.4E-05 36.3 4.4 87 69-170 47-134 (338)
45 TIGR03400 18S_RNA_Rcl1p 18S rR 73.2 20 0.00044 31.3 7.8 49 48-97 282-332 (360)
46 PHA02627 hypothetical protein; 71.2 3 6.6E-05 27.4 1.7 22 77-100 34-55 (73)
47 PRK00188 trpD anthranilate pho 71.0 5.8 0.00013 34.2 3.9 81 77-170 52-132 (339)
48 TIGR01245 trpD anthranilate ph 70.4 6.4 0.00014 33.8 4.1 83 77-170 46-128 (330)
49 PF06076 Orthopox_F14: Orthopo 69.0 3.7 8.1E-05 27.0 1.8 22 77-100 34-55 (73)
50 PRK14607 bifunctional glutamin 65.0 12 0.00027 34.2 5.0 80 77-169 244-324 (534)
51 PF03484 B5: tRNA synthetase B 64.6 16 0.00035 23.9 4.3 29 81-111 22-51 (70)
52 PHA02780 hypothetical protein; 64.4 5.3 0.00011 26.3 1.8 22 77-100 34-55 (73)
53 PF01137 RTC: RNA 3'-terminal 63.9 30 0.00064 28.3 6.6 49 47-96 176-226 (228)
54 PLN02641 anthranilate phosphor 63.7 20 0.00043 31.2 5.8 81 77-170 52-132 (343)
55 PRK04204 RNA 3'-terminal-phosp 63.2 33 0.00072 29.8 7.1 47 49-96 283-330 (343)
56 TIGR02644 Y_phosphoryl pyrimid 60.5 23 0.0005 31.6 5.7 79 77-169 50-130 (405)
57 PRK09522 bifunctional glutamin 60.3 11 0.00025 34.6 3.9 81 77-170 249-330 (531)
58 TIGR03399 RNA_3prim_cycl RNA 3 60.2 21 0.00047 30.7 5.3 46 49-95 280-326 (326)
59 PRK07394 hypothetical protein; 57.7 48 0.001 28.7 7.1 84 77-170 58-143 (342)
60 COG0602 NrdG Organic radical a 54.6 18 0.00039 29.1 3.8 30 141-170 74-103 (212)
61 smart00874 B5 tRNA synthetase 53.3 44 0.00096 21.4 4.9 29 81-111 22-52 (71)
62 PRK06078 pyrimidine-nucleoside 52.9 24 0.00053 31.7 4.6 79 77-169 52-132 (434)
63 cd00874 RNA_Cyclase_Class_II R 51.7 1.3E+02 0.0029 25.9 8.8 63 33-96 70-146 (326)
64 PF09840 DUF2067: Uncharacteri 51.6 96 0.0021 24.7 7.4 93 73-170 5-103 (190)
65 COG4274 Uncharacterized conser 47.8 1E+02 0.0022 22.3 6.2 93 55-166 9-104 (104)
66 PRK05820 deoA thymidine phosph 44.5 62 0.0014 29.2 5.9 79 77-169 53-135 (440)
67 cd00875 RNA_Cyclase_Class_I RN 43.5 2.1E+02 0.0045 24.8 8.8 60 33-93 70-143 (341)
68 cd00295 RNA_Cyclase RNA 3' pho 41.8 1.1E+02 0.0025 26.4 6.9 62 33-95 70-145 (338)
69 PRK08136 glycosyl transferase 41.7 1E+02 0.0022 26.5 6.5 80 77-170 56-138 (317)
70 COG0430 RCL1 RNA 3'-terminal p 39.9 56 0.0012 28.5 4.6 63 33-96 74-150 (341)
71 PF10524 NfI_DNAbd_pre-N: Nucl 38.7 5.2 0.00011 24.2 -1.3 10 4-13 23-32 (44)
72 PF07833 Cu_amine_oxidN1: Copp 38.5 51 0.0011 21.8 3.5 26 83-108 9-34 (93)
73 TIGR03365 Bsubt_queE 7-cyano-7 37.2 37 0.0008 27.6 3.1 32 139-170 73-104 (238)
74 TIGR02643 T_phosphoryl thymidi 36.4 66 0.0014 29.1 4.7 79 77-169 52-134 (437)
75 COG2101 SPT15 TATA-box binding 35.9 58 0.0013 25.9 3.8 48 41-95 42-94 (185)
76 COG4004 Uncharacterized protei 35.4 47 0.001 23.6 2.9 25 78-104 12-36 (96)
77 PRK10510 putative outer membra 31.2 1.9E+02 0.0041 23.3 6.3 85 82-168 87-182 (219)
78 PF10940 DUF2618: Protein of u 29.5 19 0.00042 21.2 0.1 13 3-15 22-34 (40)
79 PF14085 DUF4265: Domain of un 28.7 1.6E+02 0.0034 21.3 4.9 28 78-106 65-92 (117)
80 TIGR02826 RNR_activ_nrdG3 anae 27.3 37 0.0008 25.7 1.4 28 141-169 64-91 (147)
81 cd05125 Mth938_2P1-like Mth938 27.2 1.7E+02 0.0037 21.2 4.9 32 139-170 54-85 (114)
82 PLN02356 phosphateglycerate ki 26.6 1.7E+02 0.0037 26.2 5.7 84 9-95 71-154 (423)
83 TIGR02668 moaA_archaeal probab 26.5 1.8E+02 0.0038 24.1 5.5 35 135-169 53-88 (302)
84 PRK13782 phosphocarrier protei 26.1 88 0.0019 21.0 3.0 29 141-169 5-33 (82)
85 PF13541 ChlI: Subunit ChlI of 25.0 2.7E+02 0.0059 20.3 5.7 89 68-168 12-113 (121)
86 TIGR01158 SUI1_rel translation 24.0 2.3E+02 0.0049 20.1 4.9 40 67-108 40-80 (101)
87 cd03027 GRX_DEP Glutaredoxin ( 23.5 1.9E+02 0.004 18.3 4.1 29 66-95 1-29 (73)
88 PF13573 SprB: SprB repeat 23.2 37 0.00081 19.5 0.6 12 2-13 25-36 (37)
89 COG3737 Uncharacterized conser 21.5 1.9E+02 0.0042 21.6 4.2 39 132-170 62-100 (127)
90 PRK06824 translation initiatio 21.3 2.2E+02 0.0049 21.0 4.5 40 67-108 57-97 (118)
91 PF04430 DUF498: Protein of un 20.6 1.4E+02 0.003 21.1 3.3 39 132-170 46-84 (110)
92 PF09198 T4-Gluco-transf: Bact 20.5 94 0.002 18.0 1.8 18 78-95 21-38 (38)
93 COG4317 Uncharacterized protei 20.3 31 0.00068 24.0 -0.2 12 3-14 56-67 (93)
94 COG2896 MoaA Molybdenum cofact 20.1 1.8E+02 0.0039 25.2 4.4 34 133-166 54-87 (322)
No 1
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-28 Score=214.28 Aligned_cols=130 Identities=28% Similarity=0.343 Sum_probs=117.4
Q ss_pred CCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCC
Q 047789 37 GPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPC 116 (171)
Q Consensus 37 ~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~ 116 (171)
.+.+++|++++|||||++||++++|+|++|+++|+|++. |+|+++|++++++||++|+ ..++.++|+|.+. ....+
T Consensus 9 ~~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~-s~D~~~tl~a~~~lG~~i~--~~~~~~~v~g~g~-~~~~~ 84 (428)
T COG0128 9 KPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLD-SEDTLATLEALRALGARIE--KEGDTLVVRGTGG-ELKEP 84 (428)
T ss_pred cCCccceEEECCCCccHHHHHHHHHHHcCCceEEeeeec-cHhHHHHHHHHHHhCCeEE--ccCCEEEEeCCCC-CcCCC
Confidence 345699999999999999999999999999999999999 9999999999999999999 6679999999865 34444
Q ss_pred hh--hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 117 LG--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 117 ~~--~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+. .+++++|++||+++++|....+.++++|+++|++|||.+|+++|++|||+|+
T Consensus 85 ~~~l~~GnSGTt~R~l~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~ 140 (428)
T COG0128 85 PAVLDCGNSGTTLRLLTGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKID 140 (428)
T ss_pred CceeeeccchhHHHHHHHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEE
Confidence 33 3899999999999999964557899999999999999999999999999996
No 2
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.5e-26 Score=198.98 Aligned_cols=138 Identities=51% Similarity=0.832 Sum_probs=131.1
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeee-CCEEEEEcC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNER-NKEILVNTD 108 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~-~~~~~I~~~ 108 (171)
|+++.|.|+.+++|+|+|.|.|+++..+++|++|++++++|+|+|. ..||..++++|+.||++|+ ++ ++.++|+.+
T Consensus 1 M~k~~I~Gg~~L~G~V~IsGAKNaalpii~AtlLa~~~v~L~NvP~-l~DV~~~~~ll~~lG~~v~--~~~~~~~~i~~~ 77 (421)
T COG0766 1 MDKLIIEGGNPLNGEVTISGAKNAALPLLAATLLADEPVTLTNVPD-LSDVETMLELLRNLGAKVE--RDGDGELEIDAP 77 (421)
T ss_pred CCEEEEeCCCccceEEEEeccHhHHHHHHHHHHhCCCcEEEeCCCC-hHHHHHHHHHHHHcCCEEE--EccCceEEEccc
Confidence 6789999999999999999999999999999999999999999999 9999999999999999999 44 588999988
Q ss_pred CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
.......|++++..+|+|+++++|+|++||+..+.++|+|.++.||++-|++.|++|||+|+
T Consensus 78 ~i~~~~apy~~v~kmRASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~ 139 (421)
T COG0766 78 NINSTEAPYELVRKMRASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIE 139 (421)
T ss_pred ccccccCCHHHHHHHHhHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEEE
Confidence 77667788999999999999999999999999999999999999999999999999999996
No 3
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.93 E-value=3e-25 Score=193.58 Aligned_cols=139 Identities=50% Similarity=0.852 Sum_probs=120.5
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDG 109 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~ 109 (171)
|+.++|++++.+.|+|++|||||+++|+|++|+|++|+++|+|++. ++|++.++++|++||++|++ .++++++|+|.+
T Consensus 1 ~~~~~i~~~~~~~G~i~~pgsKS~~~r~l~~a~la~g~s~i~~~~~-~~dv~~t~~~l~~lG~~i~~-~~~~~~~i~g~~ 78 (417)
T PRK09369 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPD-LSDVRTMIELLRSLGAKVEF-DGNGTVTIDASN 78 (417)
T ss_pred CCEEEEeCCCCceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCC-cHHHHHHHHHHHHCCCEEEE-cCCCEEEEECCC
Confidence 6678898767799999999999999999999999999999999999 99999999999999999983 233789998864
Q ss_pred CCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
......+...++.+|++++|+++++++.+.+.+.++|++++++||+++++++|++||++|+
T Consensus 79 ~~~~~~~~~~~~~s~~s~~~l~~~~~~~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 139 (417)
T PRK09369 79 INNTEAPYELVKKMRASILVLGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIE 139 (417)
T ss_pred CCCCcCCHHHHhhhhhHHHHHHHHhccCCceEEEecCCCccCCCchHHHHHHHHHCCCEEE
Confidence 3212234445789999999999999865555899999999999999999999999999985
No 4
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.93 E-value=3.5e-25 Score=204.25 Aligned_cols=140 Identities=23% Similarity=0.246 Sum_probs=121.6
Q ss_pred hcccccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEE
Q 047789 27 IREAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVN 106 (171)
Q Consensus 27 ~~~m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~ 106 (171)
...|+.++|++.+++.|+|++|||||++||+|++|+|++|+++|+|++. ++|+..++++|++||++|+ ++++.++|+
T Consensus 237 ~~~m~~~~v~~~~~l~G~i~vpgsKS~s~R~l~~AaLa~g~s~i~~~l~-s~D~~~~~~aL~~lGa~i~--~~~~~~~I~ 313 (673)
T PRK11861 237 GSHMEHLDLGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLD-SDDTRVMLDALTKLGVKLS--RDGGTCVVG 313 (673)
T ss_pred CCccceEEEcCCCccceEEEcCCcHHHHHHHHHHHHhcCCCEEEcCCCC-CHHHHHHHHHHHHcCCeEE--ecCCEEEEE
Confidence 3458778998878899999999999999999999999999999999999 9999999999999999998 677889998
Q ss_pred cCCCCCCCCChh-hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 107 TDGVGRAEPCLG-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 107 ~~~~~~~~~~~~-~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
|.+......... .++++++++||+.++++.. .+.++++|+++|++||+++|+++|++||++|+
T Consensus 314 g~~~~~~~~~~~i~~g~sGt~~r~L~~~~a~~-~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~ 377 (673)
T PRK11861 314 GTRGAFTAKTADLFLGNAGTAVRPLTAALAVN-GGEYRIHGVPRMHERPIGDLVDGLRQIGARID 377 (673)
T ss_pred cCCCCcCCCCceEecCCcchHHHHHHHHHHcC-CCeEEEECChhhccCChhHHHHHHHHCCCcEE
Confidence 764221111122 4788899999999999865 46889999999999999999999999999986
No 5
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=99.92 E-value=1.3e-24 Score=191.08 Aligned_cols=137 Identities=26% Similarity=0.330 Sum_probs=117.1
Q ss_pred EEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCC
Q 047789 33 LTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGR 112 (171)
Q Consensus 33 ~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~ 112 (171)
++|.+.++++|+|++|||||+++|+|++|+|++|+++|+|++. ++||+.++++|++||++|+|+.++++++|+|.+...
T Consensus 4 ~~v~~~~~~~g~i~~p~sKs~~~r~l~~a~la~~~s~i~~~~~-~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~ 82 (443)
T PLN02338 4 ITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLD-SDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKF 82 (443)
T ss_pred eEecCCCccceEEEcCCcHHHHHHHHHHHHhCCCCEEEcCCCc-CHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCc
Confidence 5777767799999999999999999999999999999999999 999999999999999999953345689998764321
Q ss_pred CCC-----Chh-hhchhhHHHHhHHHHhhhc-CCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 113 AEP-----CLG-EMRKIRGGFFVIGPLLARF-GEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 113 ~~~-----~~~-~~~~~~~s~~~l~~lla~~-~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
... ... .++++++++||++++++.. +++.++++|+++|++||+.+|++.|++|||+|+
T Consensus 83 ~~~~~~~~~~~i~~g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~ 147 (443)
T PLN02338 83 PVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVE 147 (443)
T ss_pred CCcccccccceEEcCCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEE
Confidence 111 112 3789999999999988753 357999999999999999999999999999985
No 6
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.92 E-value=2.7e-24 Score=187.21 Aligned_cols=138 Identities=39% Similarity=0.758 Sum_probs=118.8
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDG 109 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~ 109 (171)
|+++.|++++.+.|++++|||||+++|+|+||+|++|+++|+|++. ++|++.++++|++||++|+ ..+++++|+|..
T Consensus 1 ~~~~~i~~~~~~~G~v~vpgsKSs~~~ll~aa~la~g~s~i~n~~~-~~dv~~t~~~l~~lG~~i~--~~~~~~~I~g~~ 77 (417)
T PRK12830 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPD-ISDVHSLVDILEELGGKVK--RDGDTLEIDPTG 77 (417)
T ss_pred CceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHCCCEEE--EcCCEEEEECCC
Confidence 5678898877799999999999999999999999999999999999 9999999999999999998 567899999854
Q ss_pred CCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
......+......+++++||+++++++++...+.++|+++++.||+++++++|++||++|+
T Consensus 78 ~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~ 138 (417)
T PRK12830 78 IQSMPLPNGKVKSLRASYYFMGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVT 138 (417)
T ss_pred CCCCCCCHHHHhhchhHHHHHHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEE
Confidence 3222223334466789999999988865544799999999999999999999999999985
No 7
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=99.92 E-value=9e-25 Score=191.17 Aligned_cols=133 Identities=30% Similarity=0.490 Sum_probs=108.7
Q ss_pred EeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEe-eeCCEEEEEcCCCCCC
Q 047789 35 ITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFN-ERNKEILVNTDGVGRA 113 (171)
Q Consensus 35 V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~-~~~~~~~I~~~~~~~~ 113 (171)
|+++++++|+|++|||||.+||++++|+|+.|+++|+|++. ++|+..++++|++||++|+|. .++..+++.|... ..
T Consensus 1 v~~~~~l~G~v~~pgsKs~s~rali~AaLa~g~s~i~n~~~-~~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~-~~ 78 (419)
T PF00275_consen 1 VEKPSPLSGTVRVPGSKSNSHRALIAAALAEGESRIRNVPD-SDDVEATIDALRALGAKISWDEENGDTVIISGNGG-SF 78 (419)
T ss_dssp EESSSEEEEEEE--B-HHHHHHHHHHHHHGBSEEEEES----SHHHHHHHHHHHHTT-EEEEEECTSEEEEEETTST-TC
T ss_pred CCCCCceeEEEEeCCccHHHHHHHHHHHHhcCCCeEEECCc-hHHHHHHHHhhcccCceeEEeeccceEEEeccccc-cc
Confidence 67889999999999999999999999999999999999999 999999999999999999742 1345667777433 23
Q ss_pred CCChh---hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 114 EPCLG---EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 114 ~~~~~---~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
..+.+ .++.+++++||++++++.. .+.+.++|+++|++|||++++++|++||++|+
T Consensus 79 ~~~~~~~i~~g~Sgt~lr~L~~~~~~~-~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~ 137 (419)
T PF00275_consen 79 SSPEDIVIDVGNSGTTLRFLLALLALA-PGPVTFTGDCSLGKRPMDPLLDALRQLGARIS 137 (419)
T ss_dssp EESHHHHEEECCGHHHHHHHHHHHSEE-SSEEEEECSBTGGGSTCHHHHHHHHHTTEEEE
T ss_pred ccccccceeeccChhHHhHHHHHHhee-eEEEEEeccchhhhCCHHHHHHHHhhCCCEEE
Confidence 34422 3799999999999999974 47899999999999999999999999999986
No 8
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=99.91 E-value=1.3e-23 Score=182.68 Aligned_cols=138 Identities=51% Similarity=0.831 Sum_probs=121.6
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDG 109 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~ 109 (171)
|.++.|.+++.++|+|++|||||+++|++++|+|++|+++|+|++. ++|++.++++|++||++|+ ..+++++|+|.+
T Consensus 1 ~~~~~v~~~~~~~g~i~~p~skS~~~r~l~~a~la~g~~~i~~~~~-~~d~~~~~~~l~~lG~~i~--~~~~~~~i~g~~ 77 (416)
T TIGR01072 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPD-LSDVKTTLDLLRNLGARVE--RDNNTLEINTPN 77 (416)
T ss_pred CceEEEeCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCCc-hHHHHHHHHHHHHCCCEEE--EcCCEEEEECCC
Confidence 5678898867789999999999999999999999999999999999 9999999999999999999 667899999875
Q ss_pred CCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
......|.+.....|+++++++|+++..+...+.+.|++++++||+++++++|++||++|+
T Consensus 78 ~~~~~~~~~~s~~~ra~~~~~~~~la~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~ 138 (416)
T TIGR01072 78 INSTEAPYELVRKMRASILVLGPLLARFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIV 138 (416)
T ss_pred CCCCCCCHHHHhhhhHHHHHHHHHhccCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEE
Confidence 4334455666677889999999999854445889999999999999999999999999985
No 9
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=99.90 E-value=4.5e-23 Score=179.04 Aligned_cols=121 Identities=26% Similarity=0.317 Sum_probs=109.4
Q ss_pred eEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChh--hh
Q 047789 43 GHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLG--EM 120 (171)
Q Consensus 43 g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~--~~ 120 (171)
|+|++|||||+++|+|++|+|++|+++|+|++. ++||..++++|+++|++|+ ++++.++|++.+.. .+.. .+
T Consensus 1 g~i~~p~sKs~~~r~l~~a~la~g~~~i~~~~~-~~dv~~~~~~l~~lG~~i~--~~~~~~~i~g~~~~---~~~~~i~~ 74 (409)
T TIGR01356 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLR-SEDTLATLDALRALGAKIE--DGGEVAVIEGVGGK---EPQAELDL 74 (409)
T ss_pred CeEECCCCHHHHHHHHHHHHhCCCCEEECCCCc-CHHHHHHHHHHHHcCCEEE--ecCCEEEEEccCCC---CCCCEEEe
Confidence 689999999999999999999999999999999 9999999999999999999 67889999986542 2222 26
Q ss_pred chhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 121 RKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 121 ~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+.+++++||++|+++.++ +.++++|+++|++||++++++.|++||++|+
T Consensus 75 g~sgt~~r~l~~l~a~~~-~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~ 123 (409)
T TIGR01356 75 GNSGTTARLLTGVLALAD-GEVVLTGDESLRKRPMGRLVDALRQLGAEIS 123 (409)
T ss_pred cCchHHHHHHHHHHHcCC-CeEEEECCcccccCCcHHHHHHHHHCCCEEE
Confidence 899999999999999754 7999999999999999999999999999986
No 10
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.89 E-value=1.7e-22 Score=174.76 Aligned_cols=127 Identities=51% Similarity=0.847 Sum_probs=111.8
Q ss_pred cceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCCCCCCCCChhh
Q 047789 41 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-KEILVNTDGVGRAEPCLGE 119 (171)
Q Consensus 41 l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-~~~~I~~~~~~~~~~~~~~ 119 (171)
++|+|++|||||+++|++++|+|++|+++|+|++. ++|+..++++|++||++|+ ..+ +.++|++.+.....+|.+.
T Consensus 1 ~~g~i~~p~sKS~~~r~l~~a~la~g~~~i~~~~~-~~dv~~~~~~L~~lG~~i~--~~~~~~~~I~~~~~~~~~~~~~~ 77 (400)
T cd01555 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPD-LLDVETMIELLRSLGAKVE--FEGENTLVIDASNINSTEAPYEL 77 (400)
T ss_pred CceEEEcCCcHHHHHHHHHHHHhCCCcEEEECCCC-hHHHHHHHHHHHHcCCEEE--ECCCCEEEEECCCCCCCcCCHHH
Confidence 47899999999999999999999999999999999 9999999999999999998 555 8899988644323455566
Q ss_pred hchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 120 MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 120 ~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+..++++++|++|++++.+...+.++|++++++||++.+++.|++||++|+
T Consensus 78 ~~~~~t~~~~~~~l~~~~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~ 128 (400)
T cd01555 78 VRKMRASILVLGPLLARFGEARVSLPGGCAIGARPVDLHLKGLEALGAKIE 128 (400)
T ss_pred HhhhhhHHHHHHHHhcCCCceEEEEcCCCccccCCHHHHHHHHHHCCCEEE
Confidence 778899999999998754456888999999999999999999999999986
No 11
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.88 E-value=4.9e-22 Score=173.62 Aligned_cols=131 Identities=30% Similarity=0.371 Sum_probs=115.1
Q ss_pred EEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCC
Q 047789 34 TITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRA 113 (171)
Q Consensus 34 ~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~ 113 (171)
...|+++++|+|++|||||+++|+|++|+|++|+++|.|++. ++|++.++++|++||++|+ + +.++|++.+..+.
T Consensus 6 ~~~~~~~l~g~i~~p~sks~~~r~l~~a~La~g~s~i~~~~~-~~dv~~~~~~L~~lG~~i~--~--~~~~i~~~~~~~~ 80 (435)
T PRK02427 6 LIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLR-SEDTLATLNALRALGVEIE--D--DEVVVEGVGGGGL 80 (435)
T ss_pred ccCCCCCccEEEEcCCChHHHHHHHHHHHhcCCCEEEcCCCc-cHHHHHHHHHHHHcCCeEE--c--ceEEEEccCCCCC
Confidence 344556799999999999999999999999999999999999 9999999999999999998 5 6788998755433
Q ss_pred CCChh--hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 114 EPCLG--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 114 ~~~~~--~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
..|.+ .++.+++++||++++++.. .+++.+.|+++|++||+.++++.|++|||+++
T Consensus 81 ~~~~~~i~~~~sg~~~r~l~~laa~~-~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~ 138 (435)
T PRK02427 81 KEPEDVLDCGNSGTTMRLLTGLLALQ-PGEVVLTGDESLRKRPMGRLLDPLRQMGAKIE 138 (435)
T ss_pred CCCCCEEEccCchHHHHHHHHHHHhC-CCeEEEECChhhccCChHHHHHHHHHCCCEEE
Confidence 44444 3788999999999988865 56899999999999999999999999999986
No 12
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.88 E-value=8.2e-22 Score=181.64 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=117.4
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDG 109 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~ 109 (171)
|..+.|.|...+.|+|.+|||||++||++++|+|++|+++|+|++. ++|+..++++|++||++|+ ++++.++|+|.+
T Consensus 4 ~~~~~v~p~~~l~G~i~~pgsKs~s~R~l~lAaLa~g~s~i~~~l~-s~D~~~~l~aL~~LGa~i~--~~~~~i~I~g~g 80 (661)
T PRK11860 4 TEFLDLPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLD-SDDTRVMLDALRALGCGVE--QLGDTYRITGLG 80 (661)
T ss_pred ccceeecCCCcccEEEEcCCCHHHHHHHHHHHHhCCCCEEEccCCc-cHHHHHHHHHHHHcCCEEE--ecCCEEEEECCC
Confidence 4446676656689999999999999999999999999999999999 9999999999999999999 778889998864
Q ss_pred CCCCCCChh-hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLG-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~-~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
......... +++++++++|+++++++.. .+.+.++|+.+|++||+.+|++.|++||++|+
T Consensus 81 ~~l~~~~~~i~~g~sGtt~r~Ll~~~al~-~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~ 141 (661)
T PRK11860 81 GQFPVKQADLFLGNAGTAMRPLTAALALL-GGEYELSGVPRMHERPIGDLVDALRQLGCDID 141 (661)
T ss_pred CCcCCCCceEEeCCchHHHHHHHHHHHcC-CCeEEEECCchhhcCChHHHHHHHHHCCCEEE
Confidence 311111122 3689999999999888854 57899999999999999999999999999986
No 13
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.87 E-value=1.5e-21 Score=181.08 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=126.8
Q ss_pred ccccchhhhccc----ccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeE
Q 047789 19 QIRTQTTQIREA----ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKI 94 (171)
Q Consensus 19 ~~~~~~~~~~~m----~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v 94 (171)
--+.++.|+..| +.++|+|+..+.|++++|||||+++|+|++|+|++|+++|+|++. ++|+..++++|+++|++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~G~i~ipgskS~~~r~L~~a~la~g~s~i~~~~~-~~dv~~ti~~L~~lG~~v 364 (735)
T PRK14806 286 KMLARRAYVEAMNANDVSYSVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLE-GEDALATLQAFRDMGVVI 364 (735)
T ss_pred HHhcccccccccccCceEEEeccCCcccEEEEcCCChhHHHHHHHHHHhCCCcEEEcCCCc-cHHHHHHHHHHHHcCCEE
Confidence 346678888775 458898867899999999999999999999999999999999999 999999999999999999
Q ss_pred EEeeeCCEEEEEcCCCCCCCCCh-h-hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 95 EFNERNKEILVNTDGVGRAEPCL-G-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 95 ~~~~~~~~~~I~~~~~~~~~~~~-~-~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
++ .+++.++|++.+..+...+. . .++.+++++||++|+++.. .+.+.++|+++++.||++++++.|++||++|+
T Consensus 365 ~~-~~~~~~~i~g~~~~~~~~~~~~i~~~~s~ts~~ll~a~la~~-~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~ 440 (735)
T PRK14806 365 EG-PHNGRVTIHGVGLHGLKAPPGPLYMGNSGTSMRLLSGLLAAQ-SFDSVLTGDASLSKRPMERVAKPLREMGAVIE 440 (735)
T ss_pred Ee-cCCCEEEEEcCCCCCCCCCCceeeccCchHHHHHHHHHHhcC-CCeEEEECChhhhhCChHHHHHHHHHCCCEEE
Confidence 84 24568899875443333332 2 3678999999999999864 56899999999999999999999999999985
No 14
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.86 E-value=9.5e-21 Score=163.63 Aligned_cols=126 Identities=30% Similarity=0.340 Sum_probs=109.7
Q ss_pred cceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChh-h
Q 047789 41 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLG-E 119 (171)
Q Consensus 41 l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~-~ 119 (171)
++|+|++|||||+++|++++|++++|+++|+|++. ++|+..++++|++||++|+ ++++.++|+|.+......... .
T Consensus 1 l~g~i~~~~sKs~~~r~l~~a~l~~g~~~i~~~~~-~~dv~~~~~~L~~lG~~i~--~~~~~~~i~g~~~~~~~~~~~i~ 77 (409)
T cd01556 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLD-SDDTLATLEALRALGAKIE--EEGGTVEIVGGGGLGLPPEAVLD 77 (409)
T ss_pred CcEEEEcCCchHHHHHHHHHHHhcCCCEEECCCCC-CHHHHHHHHHHHHcCCeEE--ecCCEEEEEcCCCCCCCCCceEE
Confidence 47899999999999999999999999999999999 9999999999999999999 667899999865432211112 3
Q ss_pred hchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 120 MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 120 ~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+..+++++||+.++++. .++.+.+.|.+++++||++.+++.|++|||+|+
T Consensus 78 ~~~s~~s~~~l~~l~~~-~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~ 127 (409)
T cd01556 78 CGNSGTTMRLLTGLLAL-QGGDSVLTGDESLRKRPMGRLVDALRQLGAEIE 127 (409)
T ss_pred cCCchHHHHHHHHHHHc-CCCeEEEECCcccccCChHHHHHHHHHCCCEEE
Confidence 57788899999998875 467899999999999999999999999999986
No 15
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.84 E-value=3.8e-20 Score=160.47 Aligned_cols=126 Identities=23% Similarity=0.311 Sum_probs=107.6
Q ss_pred cceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCCh-h-
Q 047789 41 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCL-G- 118 (171)
Q Consensus 41 l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~-~- 118 (171)
++|++++|||||+++|+|++|++++|+++|.|++. ++|+..++++|+++|++|+ ++++.++|.+.+......+. .
T Consensus 1 ~~G~v~i~gskS~~~~~L~~a~la~g~~~i~~~~~-~~dv~~t~~~L~~lG~~i~--~~~~~~~v~g~~~~~~~~~~~~~ 77 (408)
T cd01554 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILR-GEDVLSTMQVLRDLGVEIE--DKDGVITIQGVGMAGLKAPQNAL 77 (408)
T ss_pred CceEEEcCCchHHHHHHHHHHHhCCCcEEEeCCCc-cHHHHHHHHHHHHcCCeEE--ecCCEEEEEecCCCCCCCCCceE
Confidence 47899999999999999999999999999999999 9999999999999999999 66788999986542222221 1
Q ss_pred hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 119 EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 119 ~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
.++.+++++||+.++++.. .+.+.+.|+++++.||++++++.|++||++++
T Consensus 78 ~~g~s~~~~~~l~a~~~~~-~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~ 128 (408)
T cd01554 78 NLGNSGTAIRLISGVLAGA-DFEVELFGDDSLSKRPMDRVTLPLKKMGASIS 128 (408)
T ss_pred EccCccHHHHHHHHHHHcC-CCeEEEECCchhhcCChHHHHHHHHHCCCEEE
Confidence 2456778888988888643 46899999999999999999999999999986
No 16
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=99.68 E-value=3.5e-16 Score=137.47 Aligned_cols=133 Identities=24% Similarity=0.340 Sum_probs=106.7
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhC-CCe-EEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCE-EEEEc
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLC-SNS-CLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKE-ILVNT 107 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa-~g~-~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~-~~I~~ 107 (171)
.+.|+|++++.+ ++.||||.|+|.++|+||+++ +.+ ++++|+.. ..|...++++|++|||+|+ +.++. ++|.+
T Consensus 220 ~~~i~~g~~~~~~~~~VpgD~SSAafflaAaai~~~~~~i~~~~v~~-~~~~~~~~~vl~~MGa~i~--~~~~~~l~V~~ 296 (428)
T COG0128 220 RFYIPGGQKLTPGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQP-NPTDKGILDVLEKMGADIE--IGDDSVLRVRG 296 (428)
T ss_pred EEEECCCccccCceEEcCCChhhHHHHHHHHHhcCCCceeeeccCCc-CcchhHHHHHHHHcCCeEE--EccCceEEEee
Confidence 378888775555 899999999999999999998 445 88888886 5565689999999999999 55554 58888
Q ss_pred CC-CCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC---CCChHHHHHHHHhCCCeEEC
Q 047789 108 DG-VGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~~ 171 (171)
.. +++..+|.+..... ....+++|+++++++++.|-+++| .+|++.+.++|++||++|++
T Consensus 297 ~~~l~gi~vd~~~~pD~----~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e 360 (428)
T COG0128 297 SGELKGIEVDMDDMPDL----APTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEE 360 (428)
T ss_pred cCCccCeEeCcccCchH----HHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEe
Confidence 65 77777775432222 134477778999999999999987 49999999999999999975
No 17
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.64 E-value=1.3e-15 Score=134.20 Aligned_cols=129 Identities=27% Similarity=0.323 Sum_probs=105.7
Q ss_pred cceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCC-eEEEeeeCCEEEEEcCCCCC-CCCCh-
Q 047789 41 LSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGA-KIEFNERNKEILVNTDGVGR-AEPCL- 117 (171)
Q Consensus 41 l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa-~v~~~~~~~~~~I~~~~~~~-~~~~~- 117 (171)
..+.+.+|||||+++|++++|++.+|.+++.|+++ ++|+..++.+|..||. ...| .++++.+++|.+..+ ...+.
T Consensus 105 i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~-sddt~~m~sal~~L~~~~~~w-e~~~~~vveG~gg~~~~~~~~~ 182 (595)
T KOG0692|consen 105 ISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLN-SDDTNYMLSALKTLGLNVETW-EENNRAVVEGCGGEFSIDSKSD 182 (595)
T ss_pred hhceeeCCCCchhhhhHHHHHHHhccceecccccc-ccchhhhhhhHHHhcccccee-cCCCEEEEEcCCCeeeechhhh
Confidence 44578999999999999999999999999999999 9999999999999985 4565 456789999976532 11122
Q ss_pred -hh-hchhhHHHHhHHHHhhhc----CCcEEEecCCCCCCCCChHHHHHHHHhCCCeEEC
Q 047789 118 -GE-MRKIRGGFFVIGPLLARF----GEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 118 -~~-~~~~~~s~~~l~~lla~~----~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~~ 171 (171)
++ .+.+++.+|+++-++++. +...+.++|..++++|||++|++.|+++|++|++
T Consensus 183 ~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~ 242 (595)
T KOG0692|consen 183 IELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIEC 242 (595)
T ss_pred hhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEE
Confidence 33 578888889998666642 2235789999999999999999999999999973
No 18
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=99.44 E-value=2.1e-13 Score=119.54 Aligned_cols=132 Identities=29% Similarity=0.440 Sum_probs=94.5
Q ss_pred cEEEeCCCc-cce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHH---HHHH-HHHHcCCeEEEeeeC-CEEE
Q 047789 32 TLTITGPTQ-LSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTK---TMLS-ILRLLGAKIEFNERN-KEIL 104 (171)
Q Consensus 32 ~~~V~~~~~-l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~---~~l~-~L~~lGa~v~~~~~~-~~~~ 104 (171)
.+.|.|.+. +.+ +++||+|+|.+.+++++|++++|+++|+|++. ++++ .+++ +|++||++|+ ..+ +.+.
T Consensus 216 ~~~i~g~~~~~~~~~~~v~~D~s~Aa~~l~aa~l~~g~v~i~~~~~--~~~~gd~~~l~~iL~~mG~~i~--~~~~~~~~ 291 (419)
T PF00275_consen 216 IISIPGGQYILPGCEYTVPGDWSSAAFFLAAAALTGGEVTIKNLPP--NSLQGDKEFLDDILRRMGAKIE--EEDDGVIV 291 (419)
T ss_dssp EEEEETTSSBBBSEEEE--B-HHHHHHHHHHHHHCTTEEEEESEEG--GGGHHHHHHHHHHHHHTTEEEE--EESEEEEE
T ss_pred EEEEEeccccccceeEEecCCHHHHHHHHHHHheeCcEEEEEecCc--hhhhhhHHHHHHHHHHhCCCcc--cCCCeeEE
Confidence 378888887 676 99999999999999999999999999999987 4443 4666 9999999999 555 4555
Q ss_pred EEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC---CCChHHHHHHHHhCCCeEEC
Q 047789 105 VNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 105 I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~~ 171 (171)
+.+....+..++-..+.... +...+++.+..+.+.+.|..+++ .+++..++++|++||+++++
T Consensus 292 ~~~~~~~~~~~di~~~pd~~----p~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~ 357 (419)
T PF00275_consen 292 VGGSGLRGIEIDISDAPDLA----PTLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEE 357 (419)
T ss_dssp EEETTSBEBEEEEEBCSTTC----HHHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEE
T ss_pred EecccccccccccccCccch----hHHHHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEE
Confidence 55544433333211122221 22244555666788898888885 49999999999999999873
No 19
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=99.40 E-value=2.5e-12 Score=111.75 Aligned_cols=133 Identities=22% Similarity=0.348 Sum_probs=94.5
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHH-HHHHHHHHHcCCeEEEeeeCCEEEEEcC-
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDT-KTMLSILRLLGAKIEFNERNKEILVNTD- 108 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv-~~~l~~L~~lGa~v~~~~~~~~~~I~~~- 108 (171)
.+.|++.+.+.+ ++++|+|.|++..+++||++++|+++|+|+..++... ..++++|++||++|+ ..++.++|.+.
T Consensus 204 ~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~--~~~~~i~v~~~~ 281 (409)
T TIGR01356 204 KIVVPGGQKYGPQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIE--VEEDDLIVEGAS 281 (409)
T ss_pred EEEECCCCccCCCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEE--EeCCeEEEEecC
Confidence 467776554666 7999999999999999999999999999987622222 357889999999999 66778999863
Q ss_pred CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC---CCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~ 170 (171)
.+++..++ ..+.+ ....++. +++++.++.+++.|-.+++ .+++..+++.|++||++++
T Consensus 282 ~l~~~~~~--~~d~~-d~~~~l~-~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~ 342 (409)
T TIGR01356 282 GLKGIKID--MDDMI-DELPTLA-VLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVE 342 (409)
T ss_pred CCccEEEE--CCCCh-hHHHHHH-HHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEE
Confidence 33332222 11111 1122232 2334566788888866654 3789999999999999986
No 20
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.40 E-value=4.9e-12 Score=117.19 Aligned_cols=132 Identities=20% Similarity=0.196 Sum_probs=96.3
Q ss_pred EEEeCCCcc-c-eEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 33 LTITGPTQL-S-GHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 33 ~~V~~~~~l-~-g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
+.|.+++.+ . +++.||+|.|.+.+++++|++++|+++|+|+...+ +| ..++++|++||++|+ .+++.++|.+.
T Consensus 464 i~V~~~~~~~~~~~~~V~~D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d-~~i~~iL~~mGa~i~--~~~~~i~i~~~ 540 (673)
T PRK11861 464 FTVPAGVRYRSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGD-VGFANALMQMGANVT--MGDDWIEVRGI 540 (673)
T ss_pred EEEcCCcccCCCceeECCCChHHHHHHHHHHHhcCCeEEECCCCCCCCchH-HHHHHHHHHcCCcEE--EeCCeEEEeec
Confidence 566655434 4 48999999999999999999999999999997633 45 578899999999999 67777888752
Q ss_pred -----CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC--CC-CChHHHHHHHHhCCCeEEC
Q 047789 109 -----GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI--GE-RPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 109 -----~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l--~~-Rpi~~ll~~L~~lGa~v~~ 171 (171)
.+++..+|...++..- ...+++|.++++.+.|.|-.++ ++ +++..+.++|++||+++++
T Consensus 541 ~~~~~~l~~~~iD~~~~pDl~----p~laalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~ 607 (673)
T PRK11861 541 GHDHGRLAPIDMDFNLIPDAA----MTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEE 607 (673)
T ss_pred cccCCCccceeeccccCchHH----HHHHHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEE
Confidence 2233333432222221 2223444466778888887766 44 9999999999999999863
No 21
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.37 E-value=1.2e-11 Score=107.43 Aligned_cols=133 Identities=23% Similarity=0.364 Sum_probs=99.8
Q ss_pred ccEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 047789 31 ETLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDG 109 (171)
Q Consensus 31 ~~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~ 109 (171)
..+.|.|++.+.+ ++.+|+|.+.+..+++++++++|+++|+|+.. ..+...++++|++||++|+ ..++.++|++..
T Consensus 205 ~~i~I~g~~~~~~~~~~i~~D~~~a~~~l~~~~l~~~~v~i~~~~~-~~~~~~~~~~L~~~G~~v~--~~~~~i~v~~~~ 281 (408)
T cd01554 205 KKIVVQGPQKLTGQKYVVPGDISSAAFFLVAAAIAPGRLVLQNVGI-NETRTGIIDVLRAMGAKIE--IGEDTISVESSD 281 (408)
T ss_pred cEEEECCCcccccceEEeCCChhHHHHHHHHHhhcCCeEEEecCCC-CchhhHHHHHHHHcCCEEE--EeCCeEEEecCC
Confidence 3477777655665 78999999999999999999999999999976 4445789999999999999 666778887654
Q ss_pred CCCCCCChhh---hchhhHHHHhHHHHhhhcCCcEEEecCCCCCC--C-CChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLGE---MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG--E-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~~---~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~--~-Rpi~~ll~~L~~lGa~v~ 170 (171)
.++..++.+. +... .....++|+++++.+++.|..+++ + +++..+.+.|++||++++
T Consensus 282 ~~~~~i~~~~~~~~~d~----~p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~ 344 (408)
T cd01554 282 LKATEICGALIPRLIDE----LPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIE 344 (408)
T ss_pred ceeEEeccccCCCCchH----HHHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEE
Confidence 4433333221 1111 112234555677889999988875 4 889999999999999985
No 22
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=99.33 E-value=2.3e-11 Score=105.15 Aligned_cols=133 Identities=23% Similarity=0.363 Sum_probs=97.0
Q ss_pred ccEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcC
Q 047789 31 ETLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-KEILVNTD 108 (171)
Q Consensus 31 ~~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-~~~~I~~~ 108 (171)
..+.|++++++.+ ++.+|+|.|++..+++++++++++++|.|+.. ..|...+++.|++||++|+ ..+ +.++|.+.
T Consensus 206 ~~i~I~~~~~l~~~~i~i~~d~s~~~~l~~~a~~~~~~v~i~~~~~-~~~~~~~~~~L~~~G~~i~--~~~~~~i~i~~~ 282 (409)
T cd01556 206 RTITVKGGQKYKGPEYTVEGDASSAAFFLAAAAITGSEIVIKNVGL-NSGDTGIIDVLKEMGADIE--IGNEDTVVVESG 282 (409)
T ss_pred cEEEECCCCccccCeeEeCCcHHHHHHHHHHHHhcCCeEEEcCCCC-CChHHHHHHHHHHCCCeEE--EcCCCeEEEccC
Confidence 3477776545665 79999999999999999999999999999877 5567899999999999998 555 78888875
Q ss_pred -CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC--C-CCChHHHHHHHHhCCCeEE
Q 047789 109 -GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI--G-ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 -~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l--~-~Rpi~~ll~~L~~lGa~v~ 170 (171)
.+++..++.+.. .+.. .++ ++++.+.++.+.+.+-..+ + .+++..+++.|++||++++
T Consensus 283 ~~~~~~~v~~~~~--~d~~-~~l-a~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~ 344 (409)
T cd01556 283 GKLKGIDIDGNDI--PDEA-PTL-AVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVE 344 (409)
T ss_pred CCcCceEeccccC--chHH-HHH-HHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEE
Confidence 233333332211 2222 222 2233355667888887776 3 3679999999999999986
No 23
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.29 E-value=2.5e-11 Score=112.32 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=97.1
Q ss_pred EEEeCCCcc--ceEEEccCCHHHHHHHHHHHhhCCC-eEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEc
Q 047789 33 LTITGPTQL--SGHVPISGSKNSSLCLLAATLLCSN-SCLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVNT 107 (171)
Q Consensus 33 ~~V~~~~~l--~g~i~vpgsKS~a~r~l~aAaLa~g-~~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~ 107 (171)
+.|.+++.+ .+++.+|+|.|.+.+++++|++++| +++|+|+...+ +| ..+++.|++||++|+ ..++.++|.+
T Consensus 226 i~v~~~~~l~~~~~~~V~~D~s~a~~l~aaaa~~~G~~v~i~~v~~~~~q~d-~~il~~L~kmGa~i~--~~~~~i~i~~ 302 (661)
T PRK11860 226 FTIPAGSRYRSPGEIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGD-IRFAEAARAMGAQVT--SGPNWLEVRR 302 (661)
T ss_pred EEEcCCcccCCCceeEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCCCCccH-HHHHHHHHHcCCEEE--EeCCEEEEEe
Confidence 566654445 3489999999999999999999999 99999997622 33 489999999999999 7788898886
Q ss_pred C--CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC---CCChHHHHHHHHhCCCeEE
Q 047789 108 D--GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 108 ~--~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~ 170 (171)
. .+++..++...+..+ .+..+++|.++++.++|.|-.+++ .+++..+.+.|++||++++
T Consensus 303 ~~~~l~g~~id~~~~pdi----~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~i~ 366 (661)
T PRK11860 303 GAWPLKAIDLDCNHIPDA----AMTLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVE 366 (661)
T ss_pred cCCCCcceEEcCcCChHH----HHHHHHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCEEE
Confidence 4 233333332222222 133345555677888888877776 3779999999999999986
No 24
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=99.29 E-value=9.3e-11 Score=102.05 Aligned_cols=132 Identities=19% Similarity=0.185 Sum_probs=91.3
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC--
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD-- 108 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~-- 108 (171)
.+.|.+.+.+.+ ++.+++|.+.+..+++++++++|+++|.|+.. +++..++++|++||++|+ .+++.+.|.+.
T Consensus 213 ~l~I~g~~~~~~~~~~v~~D~~~a~~~l~a~~l~~g~~~i~~~~~--~~~~~~~~~L~~~G~~v~--~~~~~i~v~~~~~ 288 (416)
T TIGR01072 213 TITIEGVEKLHGTEHSVIPDRIEAGTFLVAAAITGGEITIKNVRP--DHLRAVLAKLREIGAEVE--VDENGIRVDMRQK 288 (416)
T ss_pred EEEEeCCCcccCcEEEEcCCHHHHHHHHHHHHHcCCeEEEEecCc--hHHHHHHHHHHHCCCEEE--EcCCEEEEEecCC
Confidence 467776555665 78999999988888999999899999999875 677889999999999999 67788888764
Q ss_pred CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
.+++..++...+....+.+..+..++|++.++...+.+. ..++++. +++.|++||++++
T Consensus 289 ~l~~~~i~~~~~p~v~~D~~~~l~~la~~a~g~~~i~~~--~~~~r~~-~~~~L~~~Ga~i~ 347 (416)
T TIGR01072 289 RLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITET--VFENRFM-HVDELIRMGANIK 347 (416)
T ss_pred CcceeEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEee--ecccHHH-HHHHHHHCCCeEE
Confidence 344333331112211111111113344465667777763 2344455 7999999999986
No 25
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=99.29 E-value=9e-11 Score=102.55 Aligned_cols=130 Identities=21% Similarity=0.199 Sum_probs=88.1
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC-C
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD-G 109 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~-~ 109 (171)
.+.|++++.+.+ ++++|+|+|.+..++++|++++|.++|.|+.. +.++.++++|++||++|+ .+++.++|.+. .
T Consensus 214 ~i~I~g~~~~~~~~~~v~~D~s~as~ll~aa~l~~g~v~i~~~~~--~~~~~~~~~L~~~G~~v~--~~~~~i~v~~~~~ 289 (417)
T PRK09369 214 TITIEGVERLHGAEHTVIPDRIEAGTFLVAAAITGGDVTIRGARP--EHLEAVLAKLREAGAEIE--EGEDGIRVDMPGR 289 (417)
T ss_pred eEEEcCCCccCCceEEecCCHHHHHHHHHHHHHcCCceEEecCCh--hHHHHHHHHHHHcCCEEE--EcCCEEEEeeCCC
Confidence 467777655655 79999999999999999999989999998764 677889999999999999 66778888864 3
Q ss_pred CCCCCCChhhhchh--hHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLGEMRKI--RGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~~~~~~--~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+++..++...++.. -.+. ++ .++|++.++...+.+. +.+.+ ..+++.|++||++|+
T Consensus 290 l~~~~i~~~~~p~v~~D~~~-~l-~~~aa~a~g~~~i~~~--~~~~r-~~~~~~L~~mG~~i~ 347 (417)
T PRK09369 290 LKAVDIKTAPYPGFPTDMQA-QF-MALLTQAEGTSVITET--IFENR-FMHVPELIRMGADIE 347 (417)
T ss_pred ccceEEecCCCCCCHHHHHH-HH-HHHHHhCCCeEEEEec--ccccH-HHHHHHHHHCCCeEE
Confidence 44333331111100 0111 22 2233354555666542 22223 348999999999986
No 26
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=99.28 E-value=4e-11 Score=105.70 Aligned_cols=131 Identities=19% Similarity=0.284 Sum_probs=91.7
Q ss_pred EEEeCCCcc--ceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 33 LTITGPTQL--SGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 33 ~~V~~~~~l--~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
+.|.+++.+ .+++.+++|.|++.+++++|++++|+++|+|+...+ +| ..++++|++||++|+ ..++.++|.+.
T Consensus 232 i~i~~~~~l~~~~~~~i~~D~ssa~~~la~a~~~~g~v~i~~~~~~~~~~d-~~~l~~L~~mGa~v~--~~~~~i~i~~~ 308 (443)
T PLN02338 232 FFIKGGQKYKSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGD-VKFAEVLEKMGAKVE--WTENSVTVTGP 308 (443)
T ss_pred EEEcCCccccCCCeEEeCCCHHHHHHHHHHHHhcCCeEEECCCCCCCCcch-hHHHHHHHHcCCeEE--EcCCeEEEcCC
Confidence 667654435 358999999999999999999999999999964411 45 468999999999999 66778888764
Q ss_pred C--------CCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC---CCChHHHHHHHHhCCCeEE
Q 047789 109 G--------VGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~--------~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~ 170 (171)
. ..+..++..... +.. .++ .+++.++++.+.+.+-..++ .+++..+.+.|++||++++
T Consensus 309 ~~~~~~~~~l~~~~~d~~~~~--d~~-~~l-a~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~ 377 (443)
T PLN02338 309 PRDAFGGKHLKAIDVNMNKMP--DVA-MTL-AVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVE 377 (443)
T ss_pred cccccccCCccceEECcccCh--hHH-HHH-HHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEE
Confidence 2 211222211111 211 222 33333556778888876764 2779999999999999986
No 27
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=99.26 E-value=1.4e-10 Score=100.50 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=87.8
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC--
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD-- 108 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~-- 108 (171)
.+.|++++.++| ++.+++|.+.+..++++|++++|+++|+|+.. +.+..+++.|++||++|+ ..++.++|.+.
T Consensus 203 ~i~I~g~~~l~~~~~~~~~D~~~a~~~l~aa~~~~g~~~i~~~~~--~~~~~~~~~L~~~G~~i~--~~~~~i~i~~~~~ 278 (400)
T cd01555 203 TIRIEGVERLHGAEHTVIPDRIEAGTFLVAAAITGGDITVENVIP--EHLEAVLAKLREMGAKIE--IGEDGIRVDGDGG 278 (400)
T ss_pred eEEEeCCCCCCCcEEEecCCHHHHHHHHHHHHHhCCcEEEeCCCh--hHHHHHHHHHHHCCCEEE--EcCCEEEEEcCCC
Confidence 467776555665 78999999988889999999999999998875 677789999999999999 66788998865
Q ss_pred CCCCCCCChhhhchhhHHHH-hHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLGEMRKIRGGFF-VIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~-~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
.+++..++...++...+-+. ++ .++|++.++...+.+. +.+.+.. +.+.|++||++++
T Consensus 279 ~l~~~~i~~~~~p~~~~D~~~~l-~~~a~~~~g~~~~~~~--~~~~r~~-~~~~L~~lGa~i~ 337 (400)
T cd01555 279 RLKAVDIETAPYPGFPTDLQAQF-MALLTQAEGTSVITET--IFENRFM-HVDELNRMGADIK 337 (400)
T ss_pred CceeeeeecCcCCCCHHHHHHHH-HHHHHhCCCeEEEEee--ehhhhhH-HHHHHHHcCCeEE
Confidence 34333333211121110001 22 2233344455556542 2222233 8999999999985
No 28
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=99.21 E-value=3.3e-10 Score=98.83 Aligned_cols=133 Identities=13% Similarity=0.157 Sum_probs=84.6
Q ss_pred ccEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC-
Q 047789 31 ETLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD- 108 (171)
Q Consensus 31 ~~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~- 108 (171)
..+.|+|++.+.| ++.+++|.+.+..+++++++..+.++|+|+.. .+++.++++|++||++|+ .+++.+.|.+.
T Consensus 211 ~~i~I~g~~~~~~~~~~v~~d~~sa~~~l~~aa~~~~~~~i~~~~~--~~~~~~~~~L~~~G~~i~--~~~~~i~v~~~~ 286 (417)
T PRK12830 211 DVIRIEGVDELHGCRHTVIPDRIEAGTYMILAAACGGGVTINNVIP--EHLESFIAKLEEMGVRVE--VNEDSIFVEKQG 286 (417)
T ss_pred cEEEEccCCcccCcEEeeCCCcHHHHHHHHHHHHhCCCEEEeCCCh--hHHHHHHHHHHHCCCEEE--EcCCEEEEEeCC
Confidence 3577877665666 78889998888766666666667788999875 578899999999999999 66778888763
Q ss_pred CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEec-CCCCCCCCChHHHHHHHHhCCCeEEC
Q 047789 109 GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLP-GGCDIGERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~-G~~~l~~Rpi~~ll~~L~~lGa~v~~ 171 (171)
.+++..++...++...+.+-...++++.+.++..++. |-.+++ ...++.|++||+++++
T Consensus 287 ~l~~~~i~~~~~p~~~~D~~~~laa~a~~a~g~~~i~~~~~~~r----~~~~~~L~~mGa~i~~ 346 (417)
T PRK12830 287 NLKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTDTIYEKR----FKHVDELKRMGANIKV 346 (417)
T ss_pred CccceeeccCCCCCChHHHHHHHHHHHHcCCCcEEEEeccchhh----HHHHHHHHHCCCeEEE
Confidence 3444433322122111111111222333444455555 433322 2247899999999863
No 29
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.18 E-value=3.2e-10 Score=99.23 Aligned_cols=132 Identities=24% Similarity=0.365 Sum_probs=90.1
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCC-eEEEeeCCCCCh--HHHHHHHHHHHcCCeEEEeeeCC------
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSN-SCLLHNVPTGLS--DTKTMLSILRLLGAKIEFNERNK------ 101 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g-~~~I~n~~~~s~--Dv~~~l~~L~~lGa~v~~~~~~~------ 101 (171)
.+.|++++.+.+ ++.+|+|.|++..+++++++++| +++|.|+...+. | ..+++.|++||++|+ ..++
T Consensus 222 ~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~-~~~l~~L~~~G~~v~--~~~~~~~~~~ 298 (435)
T PRK02427 222 RIVIKGGQRLRGQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGG-KAIIDVLEKMGADIE--IENEREGGEP 298 (435)
T ss_pred EEEECCCcccccceEEeCCCHHHHHHHHHHHHhCCCCeEEEeCCCCCCCcch-HHHHHHHHHcCCceE--eccccccCCc
Confidence 356666555665 79999999999999999999988 899999743121 2 479999999999998 4332
Q ss_pred --EEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC---CCChHHHHHHHHhCCCeEE
Q 047789 102 --EILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 102 --~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~ 170 (171)
.++|.+..+++..++ ..+.+.... ++. ++|+++++.+++.|-.+++ .+++..+++.|++||++++
T Consensus 299 ~~~i~i~~~~l~~~~~~--~~d~~d~~~-~l~-~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~ 368 (435)
T PRK02427 299 VGDIRVRSSELKGIDID--IPDIIDEAP-TLA-VLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVE 368 (435)
T ss_pred cCcEEEecCCcccEEee--cCCCchHHH-HHH-HHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEE
Confidence 477774434332222 112222222 222 2323456678888876654 3778899999999999986
No 30
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.13 E-value=7.7e-10 Score=103.12 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=95.6
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCC-eEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCC--------
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSN-SCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNK-------- 101 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g-~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~-------- 101 (171)
.+.|.+.+.+.+ ++.+|+|.+.+..+++++++++| +++|+|+.....+ ..+++.|++||++|+ ..++
T Consensus 515 ~i~I~g~~~~~~~~~~i~~D~~~a~~~~~~a~~~~g~~v~i~~~~~~~~~-~~~~~~L~~mGa~i~--~~~~~~~~g~~~ 591 (735)
T PRK14806 515 TISVEGGGKLTATDIEVPADISSAAFFLVAASIAEGSELTLEHVGINPTR-TGVIDILKLMGADIT--LENEREVGGEPV 591 (735)
T ss_pred EEEECCCccccCCeEEeCCCHHHHHHHHHHHHhCCCCEEEEccCCCCcch-HHHHHHHHHcCCEEE--EcCcccccCCcc
Confidence 467776555665 79999999999999999999865 7999998541233 579999999999999 4443
Q ss_pred -EEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC--C-CChHHHHHHHHhCCCeEE
Q 047789 102 -EILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG--E-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 102 -~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~--~-Rpi~~ll~~L~~lGa~v~ 170 (171)
.+.|.+..+++.+++.+..+..-. +.....+++.++++.++|.|-.+++ + +++..+.+.|++||++++
T Consensus 592 ~~i~v~~~~l~~~~i~~~~~p~~~D-~~p~la~~a~~a~G~s~i~~~~~lr~~EsdR~~~~~~~L~~lG~~i~ 663 (735)
T PRK14806 592 ADIRVRGARLKGIDIPEDQVPLAID-EFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDCE 663 (735)
T ss_pred eeEEEecCCcccEEechHhCcchhh-HHHHHHHHHHhCCCcEEEEChHHhccchhHHHHHHHHHHHHcCCEEE
Confidence 466766545544444333221101 1122234444677889999877664 4 899999999999999986
No 31
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=98.99 E-value=4.9e-09 Score=84.34 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHHhhCCCeEEEeeCCCCCh-------HHHHHHHHHHHc-CCeEEEe-eeCCEEEEEcCCCCCCCCChh
Q 047789 48 SGSKNSSLCLLAATLLCSNSCLLHNVPTGLS-------DTKTMLSILRLL-GAKIEFN-ERNKEILVNTDGVGRAEPCLG 118 (171)
Q Consensus 48 pgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~-------Dv~~~l~~L~~l-Ga~v~~~-~~~~~~~I~~~~~~~~~~~~~ 118 (171)
.||.|++..++++|++++++++|+|+..++. | ..++++|++| |+++++. ..++.+.+.+...++..++.+
T Consensus 7 ~~d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~-~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~~l~g~~i~~~ 85 (211)
T cd01553 7 KGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQH-LTFLKALEKICGATVEGGELGSDRISFRPGTVRGGDVRFA 85 (211)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHH-HHHHHHHHHHcCCeEEeeecCCceEEEeCCCccceEEEec
Confidence 4899999999999999998999999986333 4 5899999999 9999831 126678887544443333322
Q ss_pred hhc--hhhHHHHhHHHHhhhcCCcEEEecCCCCCCC-------CChHHHHHHHHhCCCeEE
Q 047789 119 EMR--KIRGGFFVIGPLLARFGEAVVGLPGGCDIGE-------RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 119 ~~~--~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~-------Rpi~~ll~~L~~lGa~v~ 170 (171)
..+ .....+-.+.+++ .++++++++.+...++. +++..++..|++||++++
T Consensus 86 ~~s~g~~~d~~~~l~~la-~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~ 145 (211)
T cd01553 86 IGSAGSCTDVLQTILPLL-LFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQE 145 (211)
T ss_pred cCCcccHHHHHHHHHHHH-HhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcce
Confidence 111 0111111222222 25566666665555432 666777999999999885
No 32
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=1.8e-08 Score=87.79 Aligned_cols=129 Identities=18% Similarity=0.293 Sum_probs=96.3
Q ss_pred EEEeCCCccce-EEEcc-CCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCC
Q 047789 33 LTITGPTQLSG-HVPIS-GSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-KEILVNTDG 109 (171)
Q Consensus 33 ~~V~~~~~l~g-~i~vp-gsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-~~~~I~~~~ 109 (171)
+..+..+.|.| +|..| .|=-.+..+++||.|++|+++|+|... .+++..+.++|++|||+|+ -.+ ++++|+|..
T Consensus 145 i~a~a~~~L~G~~I~ld~~SVGATenimmAA~lA~G~TvIeNAA~-EPEIvDLa~~Ln~MGA~I~--GaGT~~I~I~GV~ 221 (421)
T COG0766 145 IEASAPKGLKGAHIYLDKVSVGATENIMMAAVLAEGTTVIENAAR-EPEIVDLANFLNKMGAKIE--GAGTSTITIEGVE 221 (421)
T ss_pred EEEEccCCccceEEEecCCcccHHHHHHHHHHhcCCcEEEeeccc-CchHHHHHHHHHHcCCeeE--EcCCCeEEEeccc
Confidence 33333333666 45443 566788999999999999999999999 8999999999999999998 655 689999974
Q ss_pred CCCCCCChh-hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEEC
Q 047789 110 VGRAEPCLG-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 110 ~~~~~~~~~-~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~~ 171 (171)
. .....+. +.+++.++.|++.+.++. +.+.+.+ ...+-++++++.|+.+|+++++
T Consensus 222 ~-L~g~~h~VipDRIEAGT~~~aaA~tg---g~v~i~~---v~~~hl~~~~~kL~e~G~~~~~ 277 (421)
T COG0766 222 K-LHGAEHSVIPDRIEAGTFLVAAAITG---GDVTIEN---VRPEHLEAVLAKLREAGVDIEE 277 (421)
T ss_pred c-ccceeeEecCchhhHHHHHHHHHHhC---CcEEEeC---CCHHHHHHHHHHHHHhCCeEEE
Confidence 2 1223333 357788888877665542 3455553 3567899999999999999863
No 33
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00016 Score=64.81 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=86.0
Q ss_pred eEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCC-CChh-
Q 047789 43 GHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAE-PCLG- 118 (171)
Q Consensus 43 g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~-~~~~- 118 (171)
++..|.+|-|++.+.++.|+..+.++++.|+...| +|. .+-++|+.||++++ +-.+.+++.|+....+. .+..
T Consensus 339 ~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda-~Fa~vl~pmgc~v~--qt~~svtv~gp~~ga~~~~~lr~ 415 (595)
T KOG0692|consen 339 GNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDA-KFAEVLEPMGCKVS--QTENSVTVTGPPRGAFGMRHLRA 415 (595)
T ss_pred CCceeecccccccccceeeeEecceeeeccccceeccccc-chHhhhccccceee--eecccccccCCCCCcccceehhh
Confidence 47889999999999999999999999999985422 665 45599999999999 77788888876432211 1110
Q ss_pred -hhchhhHHHHhHHHHhhhcC-----CcEEEecCCCCCC---CCChHHHHHHHHhCCCeEEC
Q 047789 119 -EMRKIRGGFFVIGPLLARFG-----EAVVGLPGGCDIG---ERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 119 -~~~~~~~s~~~l~~lla~~~-----~~~~~i~G~~~l~---~Rpi~~ll~~L~~lGa~v~~ 171 (171)
.+.+...-..+.+.+.|.+. ..+.+|.+..+-+ ..+|-.+--+|++||+.++|
T Consensus 416 iD~m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E 477 (595)
T KOG0692|consen 416 IDVMNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEE 477 (595)
T ss_pred hcccccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccc
Confidence 01111111123445555433 3466777654443 38889999999999998864
No 34
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=96.38 E-value=0.092 Score=42.05 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCeEEEeeCCC-------CChHH-HHHHHHHHHcCCeEE
Q 047789 53 SSLCLLAATLLCSNSCLLHNVPT-------GLSDT-KTMLSILRLLGAKIE 95 (171)
Q Consensus 53 ~a~r~l~aAaLa~g~~~I~n~~~-------~s~Dv-~~~l~~L~~lGa~v~ 95 (171)
....+++++++++|+++|+|... +.+|. .+++..|++||++++
T Consensus 95 ~~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~ 145 (211)
T cd01553 95 VLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQE 145 (211)
T ss_pred HHHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcce
Confidence 44567777788999999998755 22343 568999999999987
No 35
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=94.43 E-value=0.67 Score=40.21 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=69.2
Q ss_pred HHHHHHHHhhCCCeEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhchhhH
Q 047789 54 SLCLLAATLLCSNSCLLHNVPTG-----LSDT-KTMLSILRLL-GAKIE-FNERNKEILVNTDGVGRAEPCLGEMRKIRG 125 (171)
Q Consensus 54 a~r~l~aAaLa~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~v~-~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~ 125 (171)
--..+++|++++.+++|+|.-.+ ..+= ..+++++.++ +++++ ++..+.++...|....+.....+ ++..|+
T Consensus 13 lR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~i~gG~~~~d-~gtagS 91 (341)
T cd00875 13 FRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNHD-CPVSRG 91 (341)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCCccCCcEEEe-CCCCcc
Confidence 34678899999999999997531 0111 3689999999 56554 32345577777764433332222 455555
Q ss_pred HHHhHHHHhh--hcCC--cEEEecCCCCCC-CCChHHH----HHHHHhCCCe
Q 047789 126 GFFVIGPLLA--RFGE--AVVGLPGGCDIG-ERPVDLY----VRGLRALGAA 168 (171)
Q Consensus 126 s~~~l~~lla--~~~~--~~~~i~G~~~l~-~Rpi~~l----l~~L~~lGa~ 168 (171)
..|++=++|- .|++ ..+++.|+-+.. .-|++-+ +-.|++||+.
T Consensus 92 I~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 92 IGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5555555543 2444 377788886665 3455443 3347899983
No 36
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=94.10 E-value=0.82 Score=39.43 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhCCCeEEEeeCCCCC------hHHHHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhchhh
Q 047789 53 SSLCLLAATLLCSNSCLLHNVPTGL------SDTKTMLSILRLL-GAKIE-FNERNKEILVNTDGVGRAEPCLGEMRKIR 124 (171)
Q Consensus 53 ~a~r~l~aAaLa~g~~~I~n~~~~s------~Dv~~~l~~L~~l-Ga~v~-~~~~~~~~~I~~~~~~~~~~~~~~~~~~~ 124 (171)
.--..+++|++++.+++|+|.-.+- +-=...++++.++ +++++ ++..+..++..|....+.....+ ++..|
T Consensus 14 ilR~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~d-~gtag 92 (326)
T TIGR03399 14 ILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKIRGGDYRFD-IGTAG 92 (326)
T ss_pred HHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCeEEEe-CCCCh
Confidence 3446789999999999999885310 1113688888888 66664 22334677777765433332222 44555
Q ss_pred HHHHhHHHHhh--hcCC--cEEEecCCCCCCCC-ChHH----HHHHHHhCCCeEE
Q 047789 125 GGFFVIGPLLA--RFGE--AVVGLPGGCDIGER-PVDL----YVRGLRALGAAVE 170 (171)
Q Consensus 125 ~s~~~l~~lla--~~~~--~~~~i~G~~~l~~R-pi~~----ll~~L~~lGa~v~ 170 (171)
+..|++=++|- .|++ ..+++.|+-+-.-. |++- ++-.|++||++++
T Consensus 93 Si~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~ 147 (326)
T TIGR03399 93 SVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAE 147 (326)
T ss_pred hhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 55555444432 2444 47778888666543 3332 3345788998765
No 37
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=93.51 E-value=0.89 Score=39.38 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=68.8
Q ss_pred HHHHHHHhhCCCeEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhchhhHH
Q 047789 55 LCLLAATLLCSNSCLLHNVPTG-----LSDT-KTMLSILRLL-GAKIE-FNERNKEILVNTDGVGRAEPCLGEMRKIRGG 126 (171)
Q Consensus 55 ~r~l~aAaLa~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~v~-~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s 126 (171)
-..+++|++++.+++|+|.-.+ ..+= ...++++.++ +++++ ++..+.+++..|....+.....+ ++..|+.
T Consensus 14 R~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~i~gG~~~~d-~gtagSi 92 (338)
T cd00295 14 RHALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGNIIGGDVRFA-CGSAGGC 92 (338)
T ss_pred HHHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEEe-CCCCcch
Confidence 3568889999999999987431 0121 4688999998 66664 22344578887765443332222 4455555
Q ss_pred HHhHHHHhh--hcCC--cEEEecCCCCCCC-CChHH----HHHHHHhCCCeEE
Q 047789 127 FFVIGPLLA--RFGE--AVVGLPGGCDIGE-RPVDL----YVRGLRALGAAVE 170 (171)
Q Consensus 127 ~~~l~~lla--~~~~--~~~~i~G~~~l~~-Rpi~~----ll~~L~~lGa~v~ 170 (171)
.|++=++|- .|++ ..+++.|+-+..- -|++- ++-.|++||+.++
T Consensus 93 ~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~ 145 (338)
T cd00295 93 GLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGD 145 (338)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 555433332 2545 4777888766653 34432 3445688998754
No 38
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=93.41 E-value=1.5 Score=38.23 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=68.3
Q ss_pred HHHHHHhhCCCeEEEeeCCCC-----C-hHHHHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhchhhHHH
Q 047789 56 CLLAATLLCSNSCLLHNVPTG-----L-SDTKTMLSILRLL-GAKIE-FNERNKEILVNTDGVGRAEPCLGEMRKIRGGF 127 (171)
Q Consensus 56 r~l~aAaLa~g~~~I~n~~~~-----s-~Dv~~~l~~L~~l-Ga~v~-~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~ 127 (171)
-.+++|++++.+++|+|.-.+ . +-=...++++.++ +++++ ++..+.++...|....+.....+ ++..|+..
T Consensus 11 ~alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~d-~gtagSit 89 (360)
T TIGR03400 11 QRLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHE-CPTTRGIG 89 (360)
T ss_pred HHHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEEe-CCCCcchH
Confidence 468889999999999987431 1 1114688999998 66654 22334567777765443332222 44455555
Q ss_pred HhHHHHh--hhcCCc--EEEecCCCCCCC-CChHH----HHHHHHhCCC---eEE
Q 047789 128 FVIGPLL--ARFGEA--VVGLPGGCDIGE-RPVDL----YVRGLRALGA---AVE 170 (171)
Q Consensus 128 ~~l~~ll--a~~~~~--~~~i~G~~~l~~-Rpi~~----ll~~L~~lGa---~v~ 170 (171)
|++=++| +.|++. .+++.|+-+..- -|++- ++-.|++||+ +++
T Consensus 90 l~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~ 144 (360)
T TIGR03400 90 YYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLE 144 (360)
T ss_pred HHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceE
Confidence 5544443 224443 777889866653 44433 3445799998 654
No 39
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=93.31 E-value=0.31 Score=39.98 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCeEEEeeCCCCC-----hH-HHHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhchhhHHH
Q 047789 56 CLLAATLLCSNSCLLHNVPTGL-----SD-TKTMLSILRLL-GAKIE-FNERNKEILVNTDGVGRAEPCLGEMRKIRGGF 127 (171)
Q Consensus 56 r~l~aAaLa~g~~~I~n~~~~s-----~D-v~~~l~~L~~l-Ga~v~-~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~ 127 (171)
..+++|+|++.+++|+|.-.+- .+ =...++++.++ +++++ ++..+.++...|....+..... .++..|+..
T Consensus 15 ~~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg~i~~g~~~~-d~~tagsi~ 93 (228)
T PF01137_consen 15 TALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPGEIRGGDYTF-DCGTAGSIS 93 (228)
T ss_dssp HHHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE--EE-ECEEEE-EEETTCBHH
T ss_pred HHHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECCCccCCcEEE-ecCCCceee
Confidence 4678889999999999974311 11 13689999999 56654 3234567887775433222112 255666666
Q ss_pred HhHHHHhhh--cCCc--EEEecCCCCCCCCChHHH-----HHHHHhCCCeEE
Q 047789 128 FVIGPLLAR--FGEA--VVGLPGGCDIGERPVDLY-----VRGLRALGAAVE 170 (171)
Q Consensus 128 ~~l~~lla~--~~~~--~~~i~G~~~l~~Rpi~~l-----l~~L~~lGa~v~ 170 (171)
|++=+++-. |++. .+++.|+-+-...|=-+. +-.|++||+.++
T Consensus 94 l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~ 145 (228)
T PF01137_consen 94 LVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVE 145 (228)
T ss_dssp HHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECE
T ss_pred eeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 666666543 4444 677788877665443333 335888998754
No 40
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=93.23 E-value=0.51 Score=40.92 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=70.9
Q ss_pred HHHHHHHhhCCCeEEEeeCCCCC------hHH-HHHHHHHHHc--CCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhH
Q 047789 55 LCLLAATLLCSNSCLLHNVPTGL------SDT-KTMLSILRLL--GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRG 125 (171)
Q Consensus 55 ~r~l~aAaLa~g~~~I~n~~~~s------~Dv-~~~l~~L~~l--Ga~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~ 125 (171)
...++++.|++.+++|.+.-. . .|- ..++++|+.+ |-.++|+..+.++...+....+.....| |...+.
T Consensus 16 r~~lvls~Lsg~pvrv~kiR~-~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~i~GG~~~~d-c~t~~~ 93 (361)
T KOG3980|consen 16 RLRLVLSTLSGKPVRVEKIRA-GRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGLILGGTVTHD-CPTARS 93 (361)
T ss_pred HHHHHHHHhcCCceEEEEecc-CCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCceeeCCceEEe-ccCccc
Confidence 455677888888999987744 2 222 4799999999 8888976667788777764433332222 333333
Q ss_pred HHHhHHHHhhh--cCC--cEEEecCCCCCCCCC-h----HHHHHHHHhCCCeEE
Q 047789 126 GFFVIGPLLAR--FGE--AVVGLPGGCDIGERP-V----DLYVRGLRALGAAVE 170 (171)
Q Consensus 126 s~~~l~~lla~--~~~--~~~~i~G~~~l~~Rp-i----~~ll~~L~~lGa~v~ 170 (171)
--||+=|+|.. |.+ ..+++.|.-.-...| + ..++-.|+++|+..+
T Consensus 94 I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 94 IGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred eeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 33555555543 333 366677776654333 2 345667899998754
No 41
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=92.78 E-value=1.7 Score=37.42 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=69.6
Q ss_pred HHHHHHHHhhCCCeEEEeeCCCC-C----hH-HHHHHHHHHHc-CCeEEE-eeeCCEEEEEcCCCCCCCCChhhhchhhH
Q 047789 54 SLCLLAATLLCSNSCLLHNVPTG-L----SD-TKTMLSILRLL-GAKIEF-NERNKEILVNTDGVGRAEPCLGEMRKIRG 125 (171)
Q Consensus 54 a~r~l~aAaLa~g~~~I~n~~~~-s----~D-v~~~l~~L~~l-Ga~v~~-~~~~~~~~I~~~~~~~~~~~~~~~~~~~~ 125 (171)
--..+++|++++.+++|+|.-.+ . .+ =...++++.++ +++++- +..+..++..|....+.....+ ++..|+
T Consensus 13 lR~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~i~gG~~~~d-~~tags 91 (326)
T cd00874 13 LRTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGKIKGGDYEFD-IGTAGS 91 (326)
T ss_pred HHHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCcEEEe-CCCCcc
Confidence 34678899999999999988531 1 11 13688889888 677651 1234677777765443332222 444555
Q ss_pred HHHhHHHHhh--hcCC--cEEEecCCCCCCCC-ChHHH----HHHHHhCCCeEE
Q 047789 126 GFFVIGPLLA--RFGE--AVVGLPGGCDIGER-PVDLY----VRGLRALGAAVE 170 (171)
Q Consensus 126 s~~~l~~lla--~~~~--~~~~i~G~~~l~~R-pi~~l----l~~L~~lGa~v~ 170 (171)
..|++=++|- .|++ ..+++.|+-+-.-. |++-+ +-.|++||++++
T Consensus 92 i~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~ 145 (326)
T cd00874 92 ITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAE 145 (326)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 5555444442 2444 47778888766543 34332 335688998765
No 42
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=91.30 E-value=3.4 Score=35.95 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeEEEee-eCCEEEEEcCCCCCCCCChhhhch
Q 047789 51 KNSSLCLLAATLLCSNSCLLHNVPTG-----LSDT-KTMLSILRLL-GAKIEFNE-RNKEILVNTDGVGRAEPCLGEMRK 122 (171)
Q Consensus 51 KS~a~r~l~aAaLa~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~v~~~~-~~~~~~I~~~~~~~~~~~~~~~~~ 122 (171)
=..--..+++|+|++.+++|+|.-.+ ..+= ...++++.++ +++++-.. .+..++..|....+.....+ ++.
T Consensus 14 gQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~i~~g~~~~d-~~t 92 (343)
T PRK04204 14 GQILRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGPIRGGDYRFD-IGT 92 (343)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCCccCCeEEEe-cCC
Confidence 34445678999999999999988431 0111 3688888888 67775212 23567777765433322222 444
Q ss_pred hhHHHHhHHHHhhh--cCC--cEEEecCCCCCCC-CChHH----HHHHHHhCCCeEE
Q 047789 123 IRGGFFVIGPLLAR--FGE--AVVGLPGGCDIGE-RPVDL----YVRGLRALGAAVE 170 (171)
Q Consensus 123 ~~~s~~~l~~lla~--~~~--~~~~i~G~~~l~~-Rpi~~----ll~~L~~lGa~v~ 170 (171)
.|+..|++=++|-. |++ ..+++.|+-+-.- -|++- ++-.|++||++++
T Consensus 93 agsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~ 149 (343)
T PRK04204 93 AGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAE 149 (343)
T ss_pred CcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 45444444333322 444 4777888876654 34433 3445789999775
No 43
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=90.81 E-value=2 Score=37.34 Aligned_cols=113 Identities=23% Similarity=0.337 Sum_probs=67.5
Q ss_pred HHHHHHhhCCCeEEEeeCCCC-----ChH-HHHHHHHHHHc-CCeEE-EeeeCCEEEEEcCCCCCCCCChhhhchhhHHH
Q 047789 56 CLLAATLLCSNSCLLHNVPTG-----LSD-TKTMLSILRLL-GAKIE-FNERNKEILVNTDGVGRAEPCLGEMRKIRGGF 127 (171)
Q Consensus 56 r~l~aAaLa~g~~~I~n~~~~-----s~D-v~~~l~~L~~l-Ga~v~-~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~ 127 (171)
-++.+|++++.+++|.|.-.+ ..+ =..++++++.+ +++|+ ++..+..+...|...++....-++ +..++..
T Consensus 19 tal~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~i~gG~~~~di-gTAGsi~ 97 (341)
T COG0430 19 TALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGKIRGGDYRVDI-GTAGSIT 97 (341)
T ss_pred HHHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccceeCceEEEEe-cCCCcee
Confidence 578899999999999998431 112 14688888888 78875 112234677777655444332222 2222222
Q ss_pred HhHH---HHhhhc--CCcEEEecCCCCCCC-CChH----HHHHHHHhCCCeEE
Q 047789 128 FVIG---PLLARF--GEAVVGLPGGCDIGE-RPVD----LYVRGLRALGAAVE 170 (171)
Q Consensus 128 ~~l~---~lla~~--~~~~~~i~G~~~l~~-Rpi~----~ll~~L~~lGa~v~ 170 (171)
+++= |++. | ++..++++|+-.-.. -|++ ..+-.|+++|.+++
T Consensus 98 LvlQtlLp~~~-fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~ 149 (341)
T COG0430 98 LVLQTLLPLLL-FADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECE 149 (341)
T ss_pred eeHHHHHHHhh-cCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceE
Confidence 3322 3332 3 345778889877764 4443 35668999998875
No 44
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=79.77 E-value=3 Score=36.29 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=55.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCC-EEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCC
Q 047789 69 LLHNVPTGLSDTKTMLSILRLLGAKIEFNERNK-EILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGG 147 (171)
Q Consensus 69 ~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~-~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~ 147 (171)
++++.. .+++.-+.+++++..-.+. .... .+-+.|+++++.. ...+.+.+. -++|+.| .++..+|.
T Consensus 47 r~Kget--~eEi~G~~~am~~~~~~~~--~p~~~~vDi~GTGGDg~~-T~NiSt~aA-------~v~A~~G-v~VaKHGn 113 (338)
T COG0547 47 RIKGET--PEEIAGFAEAMREHAPKLP--VPAADPVDIVGTGGDGAN-TINISTAAA-------IVAAAAG-VPVAKHGN 113 (338)
T ss_pred HHhcCC--HHHHHHHHHHHHHhcccCC--CCCCCCCCeecCCCCCCC-cccchHHHH-------HHHHhCC-CcEEeECC
Confidence 344444 3788889999999776655 3322 2667777766543 222333331 2344445 68999999
Q ss_pred CCCCCCChHHHHHHHHhCCCeEE
Q 047789 148 CDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 148 ~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
-+..++--. .+.|++||+++.
T Consensus 114 rs~sSksGs--aDvleaLGv~l~ 134 (338)
T COG0547 114 RSVSSKSGS--ADVLEALGVNLE 134 (338)
T ss_pred CCCCCCCcH--HHHHHHcCCCCC
Confidence 888765554 788888898764
No 45
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=73.23 E-value=20 Score=31.32 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHhhC-CCeEEEeeCCCCChHHHHHHHHHHHc-CCeEEEe
Q 047789 48 SGSKNSSLCLLAATLLC-SNSCLLHNVPTGLSDTKTMLSILRLL-GAKIEFN 97 (171)
Q Consensus 48 pgsKS~a~r~l~aAaLa-~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~v~~~ 97 (171)
+=|.+.+-.+++.-||+ ++.+++.=-.. ++++...++.++++ |++++++
T Consensus 282 ~vD~~lqdqll~~mALa~~~~S~i~~~~l-t~h~~t~l~vi~~f~~v~f~i~ 332 (360)
T TIGR03400 282 CVDSTHQPLALLLMALGQEDVSKLRLGKL-SEYTVEFLRDLKEFFGVTFKIK 332 (360)
T ss_pred ccChhHHHHHHHHHHhCCCCcceEEecCC-CHHHHHHHHHHHHhcCCEEEEE
Confidence 34677788888888998 66667775566 68999999999999 8998863
No 46
>PHA02627 hypothetical protein; Provisional
Probab=71.24 E-value=3 Score=27.41 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERN 100 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~ 100 (171)
.+|+..++++|.++||.|. +++
T Consensus 34 ed~i~ellniltelgcdvd--fde 55 (73)
T PHA02627 34 EDDITELLNILTELGCDVD--FDE 55 (73)
T ss_pred HHHHHHHHHHHHHhCCCcc--ccc
Confidence 4788899999999999998 544
No 47
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=70.99 E-value=5.8 Score=34.17 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChH
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 156 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~ 156 (171)
.+++..+.+++++....+. ..+..+-+.|+++.+... ..+ + -++..++|.+| .++..+|...+..+ -
T Consensus 52 ~~El~g~~~a~~~~~~~~~--~~~~~iDi~gtggdg~~t-~ni---s----~~~a~vlA~~G-~~V~kHG~~~~~s~--~ 118 (339)
T PRK00188 52 VDEIAGAARAMREHAVPVP--DPDDAVDIVGTGGDGANT-FNI---S----TAAAFVAAAAG-VKVAKHGNRSVSSK--S 118 (339)
T ss_pred HHHHHHHHHHHHHhCCcCC--CCCCCCcccCCCCCCCCc-cch---H----HHHHHHHHhCC-CEEEEECCCCCCCC--c
Confidence 3778889999999887665 322333344554433210 011 1 12345667666 58999998877655 2
Q ss_pred HHHHHHHhCCCeEE
Q 047789 157 LYVRGLRALGAAVE 170 (171)
Q Consensus 157 ~ll~~L~~lGa~v~ 170 (171)
--.+.|++||+.+.
T Consensus 119 GsadvLe~lGi~~~ 132 (339)
T PRK00188 119 GSADVLEALGVNLD 132 (339)
T ss_pred CHHHHHHHcCCCCC
Confidence 25688888898763
No 48
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=70.42 E-value=6.4 Score=33.82 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChH
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 156 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~ 156 (171)
.+++..+.+++++.+..+.+......+-+.|+++.+... ..+ + + ++.+++|.+| .++..+|...+..+ .
T Consensus 46 ~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg~~t-~ni---s---t-~~a~vlA~~G-~~V~kHG~r~~~s~-~- 114 (330)
T TIGR01245 46 PEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDGANT-INI---S---T-ASAFVAAAAG-VKVAKHGNRSVSSK-S- 114 (330)
T ss_pred HHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCCCCc-ccc---H---H-HHHHHHHhCC-CEEEEeCCCCCCCC-c-
Confidence 378888999999999776621012223244554432210 111 1 1 3346777666 58999998777755 2
Q ss_pred HHHHHHHhCCCeEE
Q 047789 157 LYVRGLRALGAAVE 170 (171)
Q Consensus 157 ~ll~~L~~lGa~v~ 170 (171)
-..+.|+.+|+.+.
T Consensus 115 Gs~d~le~LGi~~~ 128 (330)
T TIGR01245 115 GSADVLEALGVNLD 128 (330)
T ss_pred cHHHHHHHcCCCCC
Confidence 24688888898763
No 49
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=69.02 E-value=3.7 Score=26.99 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERN 100 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~ 100 (171)
.+|+..++++|.++||.|. +++
T Consensus 34 ed~i~ellniltelgcdvd--fde 55 (73)
T PF06076_consen 34 EDDIMELLNILTELGCDVD--FDE 55 (73)
T ss_pred HHHHHHHHHHHHHhCCCcc--ccc
Confidence 4788899999999999998 544
No 50
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=64.98 E-value=12 Score=34.23 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEeee-CCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNER-NKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~-~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++....+. .. ...+-+.|+++.+... ..+.+ ++..++|++| .++..+|...+..+
T Consensus 244 ~~El~g~~~a~~~~~~~~~--~~~~~~~D~~gtggdg~~t-~nist-------~~a~v~A~~G-~~V~kHG~r~~ss~-- 310 (534)
T PRK14607 244 ADELAGFASVMREKSRHIP--APSPRTVDTCGTGGDGFGT-FNIST-------TSAFVVAAAG-VPVAKHGNRAVSSK-- 310 (534)
T ss_pred HHHHHHHHHHHHHhCCcCC--CCCCCceEEccCCCCCCCc-cccHH-------HHHHHHHhCC-CcEEEECCCCCCCC--
Confidence 3777889999999987775 32 2345566665543311 11111 2235666666 58889998777655
Q ss_pred HHHHHHHHhCCCeE
Q 047789 156 DLYVRGLRALGAAV 169 (171)
Q Consensus 156 ~~ll~~L~~lGa~v 169 (171)
.--.+.|++||+.+
T Consensus 311 ~Gsadvle~lGv~~ 324 (534)
T PRK14607 311 SGSADVLEALGVKL 324 (534)
T ss_pred ccHHHHHHHcCCCC
Confidence 22468888889876
No 51
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=64.56 E-value=16 Score=23.93 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCeEEEee-eCCEEEEEcCCCC
Q 047789 81 KTMLSILRLLGAKIEFNE-RNKEILVNTDGVG 111 (171)
Q Consensus 81 ~~~l~~L~~lGa~v~~~~-~~~~~~I~~~~~~ 111 (171)
..+.++|+.||.+++ . +++.+.|..+..+
T Consensus 22 ~~i~~~L~~lg~~~~--~~~~~~~~v~vP~~R 51 (70)
T PF03484_consen 22 EEIIKILKRLGFKVE--KIDGDTLEVTVPSYR 51 (70)
T ss_dssp HHHHHHHHHTT-EEE--E-CTTEEEEEEETTS
T ss_pred HHHHHHHHHCCCEEE--ECCCCEEEEEcCCCc
Confidence 479999999999998 6 7889999887665
No 52
>PHA02780 hypothetical protein; Provisional
Probab=64.42 E-value=5.3 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERN 100 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~ 100 (171)
.+++..++++|.++||.|. +++
T Consensus 34 ed~i~ellniltelgcdvd--fde 55 (73)
T PHA02780 34 EDEIMELLNILTELGCDVD--FDE 55 (73)
T ss_pred hHHHHHHHHHHHHhCCCcc--ccc
Confidence 4778889999999999998 544
No 53
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=63.94 E-value=30 Score=28.32 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=38.5
Q ss_pred ccCCHHHHHHHHHHHhhCCCe-EEEeeCCCCChHHHHHHHHHHHc-CCeEEE
Q 047789 47 ISGSKNSSLCLLAATLLCSNS-CLLHNVPTGLSDTKTMLSILRLL-GAKIEF 96 (171)
Q Consensus 47 vpgsKS~a~r~l~aAaLa~g~-~~I~n~~~~s~Dv~~~l~~L~~l-Ga~v~~ 96 (171)
..=|...+-.+++..+|++|+ ++++--+. +..+...+..++++ |+++++
T Consensus 176 g~vD~~~qdqll~~mALa~g~vS~i~~g~l-t~h~~t~l~vi~~fl~v~f~v 226 (228)
T PF01137_consen 176 GCVDEHLQDQLLLFMALAKGDVSRIRVGPL-TLHTVTNLRVIEQFLGVKFKV 226 (228)
T ss_dssp CSS-HHHHHHHHHHHHCCTSSEEEEEESCS-SHHHHHHHHHHHHHCS-EEEE
T ss_pred hhhhhhhHHHHHHHHHhCCCCceEEEecCC-CHHHHHHHHHHHHHcCcEEEE
Confidence 444677788999999999994 68886667 78999999999998 888773
No 54
>PLN02641 anthranilate phosphoribosyltransferase
Probab=63.74 E-value=20 Score=31.18 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChH
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 156 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~ 156 (171)
.+++..+.+++++.+..+. .....+-+.|.++.+... ..+.+. ...++|..| .++..+|...+..+ -
T Consensus 52 ~eEiag~~~a~~~~~~~~~--~~~~~~D~~gtGGdg~~t-~nist~-------aa~v~A~~G-~~V~kHGnr~~ss~--~ 118 (343)
T PLN02641 52 FEEIAGLARAMIKRARKVD--GLVDAVDIVGTGGDGANT-VNISTG-------SSILAAACG-AKVAKQGNRSSSSA--C 118 (343)
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCCceeCCCCCCCCc-cccHHH-------HHHHHHhCC-CeEEEeCCCCCCCc--c
Confidence 4778889999999987665 323344455655443321 111111 234556555 58889999777764 4
Q ss_pred HHHHHHHhCCCeEE
Q 047789 157 LYVRGLRALGAAVE 170 (171)
Q Consensus 157 ~ll~~L~~lGa~v~ 170 (171)
--.+.|++||+.+.
T Consensus 119 GsaDvLeaLGi~~~ 132 (343)
T PLN02641 119 GSADVLEALGVAID 132 (343)
T ss_pred CHHHHHHHcCCCCC
Confidence 45778888898763
No 55
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=63.23 E-value=33 Score=29.80 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHc-CCeEEE
Q 047789 49 GSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL-GAKIEF 96 (171)
Q Consensus 49 gsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~v~~ 96 (171)
=|.+.+-.+++..+|++|.+++.=-.. ++.+...++.++++ |+++++
T Consensus 283 vD~~lqdqll~~mALa~g~S~i~~~~l-T~h~~t~l~vi~~f~~v~f~v 330 (343)
T PRK04204 283 VDEHLADQLILPMALAGGEGSFTVAEL-TSHLLTNIWVVEKFLPVKFEV 330 (343)
T ss_pred cChhHHHHHHHHHHhCCCCceEEecCC-CHHHHHHHHHHHHhcCcEEEE
Confidence 366777788899999988667775566 68999999999999 888875
No 56
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=60.46 E-value=23 Score=31.60 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEee-eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE-RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~-~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.|-.++|+. .+..+-++++++.+.. .| ..+.|++|++| ..+..+|+-.+...
T Consensus 50 ~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~~----------iS-t~~a~ivAa~G-v~VaKhgnR~lss~-- 115 (405)
T TIGR02644 50 DEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGDK----------VS-LVLGPIVAACG-VKVAKMSGRGLGHT-- 115 (405)
T ss_pred HHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCCC----------ch-HHHHHHHHhCC-CCEEeeCCCCCCCc--
Confidence 3788899999999998887421 1335566677654321 11 24468888776 57888888666544
Q ss_pred HHHHHHHHhCC-CeE
Q 047789 156 DLYVRGLRALG-AAV 169 (171)
Q Consensus 156 ~~ll~~L~~lG-a~v 169 (171)
.--.+.|+.+| +++
T Consensus 116 ~GTaD~LE~lgG~~v 130 (405)
T TIGR02644 116 GGTIDKLESIPGFRT 130 (405)
T ss_pred chHHHHHHhcCCCCC
Confidence 33566666666 554
No 57
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=60.29 E-value=11 Score=34.56 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEeee-CCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNER-NKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~-~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.+..+. .. ...+-+.|+++.+... ..+.+. ...++|+.| .++..+|...+..+
T Consensus 249 ~eEl~g~~~a~~~~~~~~~--~~~~~~iD~~gtGgdg~~t-~nist~-------aa~v~A~~G-v~V~kHG~r~~ss~-- 315 (531)
T PRK09522 249 PNEIAGAATALLENAAPFP--RPDYLFADIVGTGGDGSNS-INISTA-------SAFVAAACG-LKVAKHGNRSVSSK-- 315 (531)
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCcccccCCCCCCCCC-cccHHH-------HHHHHHhCC-CcEEEeCCCCCCCC--
Confidence 4777889999999887665 32 2234556665544321 111122 235666665 58999998887765
Q ss_pred HHHHHHHHhCCCeEE
Q 047789 156 DLYVRGLRALGAAVE 170 (171)
Q Consensus 156 ~~ll~~L~~lGa~v~ 170 (171)
--..+.|+++|+++.
T Consensus 316 ~GsadvlealGi~~~ 330 (531)
T PRK09522 316 SGSSDLLAAFGINLD 330 (531)
T ss_pred ccHHHHHHHcCCCCC
Confidence 344788888898763
No 58
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=60.15 E-value=21 Score=30.73 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHc-CCeEE
Q 047789 49 GSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL-GAKIE 95 (171)
Q Consensus 49 gsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~v~ 95 (171)
=|.+.+-.+++.-+|++|.+++.=-+. ++.+...++.+++| |++++
T Consensus 280 vD~~lqdqlll~mALa~g~S~i~~~~l-T~h~~t~l~v~~~f~~v~f~ 326 (326)
T TIGR03399 280 VDEHLADQLILYMALASGESRFTTSEL-TMHLRTNIWVIEQFLPVRFE 326 (326)
T ss_pred cChhHHHHHHHHHHhcCCCceEEecCC-CHHHHHHHHHHHHHhCCeeC
Confidence 367778888999999988777876666 78999999999999 88753
No 59
>PRK07394 hypothetical protein; Provisional
Probab=57.70 E-value=48 Score=28.74 Aligned_cols=84 Identities=19% Similarity=0.130 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC--CEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERN--KEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~--~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rp 154 (171)
.+++..+.+++++....+. ... ..+.+-|+++++..-...+.+.+ .-++|.+| .++..+|.....++-
T Consensus 58 ~eEiaG~~~a~~~~~~~~~--~~~~~~~~d~~GtggDG~~~t~NiSt~a-------A~v~A~~G-v~V~kHGnr~~ssk~ 127 (342)
T PRK07394 58 PEELAGMLDTYDELGPKLQ--SPSNQRPPIVFGMPYDGRSRTAPIYPLT-------ALILAAAG-QPVVLHGGDRMPTKY 127 (342)
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCCceeEEeCCCCCCCCCcccHHHH-------HHHHHHCC-CeEEEECCCCCCCCC
Confidence 3778889999999876664 322 23455566555421111111222 23455455 589999997776543
Q ss_pred hHHHHHHHHhCCCeEE
Q 047789 155 VDLYVRGLRALGAAVE 170 (171)
Q Consensus 155 i~~ll~~L~~lGa~v~ 170 (171)
=-...+.|++||+++.
T Consensus 128 GvtsaDvLe~LGv~~~ 143 (342)
T PRK07394 128 GVPLVELWQGLGVDLT 143 (342)
T ss_pred CchHHHHHHHCCCCCC
Confidence 2235788888898763
No 60
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=54.65 E-value=18 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=26.8
Q ss_pred EEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 141 VVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 141 ~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
-++++|++.+..+.+..|++.|++.|.++.
T Consensus 74 ~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~ 103 (212)
T COG0602 74 GVSLTGGEPLLQPNLLELLELLKRLGFRIA 103 (212)
T ss_pred eEEEeCCcCCCcccHHHHHHHHHhCCceEE
Confidence 688999999888899999999999998774
No 61
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=53.27 E-value=44 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCeEEEeee--CCEEEEEcCCCC
Q 047789 81 KTMLSILRLLGAKIEFNER--NKEILVNTDGVG 111 (171)
Q Consensus 81 ~~~l~~L~~lGa~v~~~~~--~~~~~I~~~~~~ 111 (171)
..+.++|+.||.+++ .. ++.+.|..+..+
T Consensus 22 ~ei~~~L~~lg~~~~--~~~~~~~~~v~~P~~R 52 (71)
T smart00874 22 EEIEEILKRLGFEVE--VSGDDDTLEVTVPSYR 52 (71)
T ss_pred HHHHHHHHHCCCeEE--ecCCCCeEEEECCCCc
Confidence 368999999999997 43 467888876554
No 62
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=52.88 E-value=24 Score=31.74 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEee-eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE-RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~-~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.|..++|+. .+-.+-++|+++.+.. ++. .+.|++|++| ..+.-+|+-.+...
T Consensus 52 ~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~~gTGGdG~k----------t~n-i~a~ivAA~G-v~VaKhgnR~lss~-- 117 (434)
T PRK06078 52 DRERADLTMAMVNSGDTIDLSAIEGIKVDKHSTGGVGDT----------TTL-VLAPLVAAFG-VPVAKMSGRGLGHT-- 117 (434)
T ss_pred HHHHHHHHHHHHHhCCcccCcccCCCeeEecCCCCCCCC----------chH-HHHHHHHcCC-CCeeeeCCCCcCCC--
Confidence 3788899999999999998421 1224556666553221 111 3568888876 46777776555421
Q ss_pred HHHHHHHHhC-CCeE
Q 047789 156 DLYVRGLRAL-GAAV 169 (171)
Q Consensus 156 ~~ll~~L~~l-Ga~v 169 (171)
.-=+|.|+.+ |+++
T Consensus 118 ~GTaD~LE~lpG~~~ 132 (434)
T PRK06078 118 GGTIDKLESIKGFHV 132 (434)
T ss_pred cchHHHHHhCCCCCC
Confidence 1234556666 6554
No 63
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=51.72 E-value=1.3e+02 Score=25.89 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=36.2
Q ss_pred EEEeCCCccceEE--Ec--cCCHHHHH-HHHHHHhhCCCeEE--Ee---eCCCCC--hHH--HHHHHHHHHcCCeEEE
Q 047789 33 LTITGPTQLSGHV--PI--SGSKNSSL-CLLAATLLCSNSCL--LH---NVPTGL--SDT--KTMLSILRLLGAKIEF 96 (171)
Q Consensus 33 ~~V~~~~~l~g~i--~v--pgsKS~a~-r~l~aAaLa~g~~~--I~---n~~~~s--~Dv--~~~l~~L~~lGa~v~~ 96 (171)
+...|+.-..|++ .+ .||-++-. .+|.++++++++++ |+ |++. + -|. ..++-+|+.||+++++
T Consensus 70 l~f~Pg~i~gG~~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~-sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 70 LEFEPGKIKGGDYEFDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPW-APPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred EEEECCCccCCcEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCC-CCCHHHHHHHHHHHHHhCCCcEEE
Confidence 5666665444443 33 44444444 44455566777544 44 4444 3 232 4578899999988774
No 64
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=51.62 E-value=96 Score=24.71 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHHHc--CCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC
Q 047789 73 VPTGLSDTKTMLSILRLL--GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150 (171)
Q Consensus 73 ~~~~s~Dv~~~l~~L~~l--Ga~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l 150 (171)
++. .++...+++.++++ ...++++..++.+.|.-.+.. ..+ .+....++.-+.-+-.... +.+...+.-+.=.
T Consensus 5 ~~~-~~E~~~fle~l~~~~~~~~~~v~~k~n~l~I~i~G~~-~ei-ke~~~~Ik~~~~~vr~k~~--~~g~~~y~l~~i~ 79 (190)
T PF09840_consen 5 FRD-DEECEEFLERLSKMVKSIYIYVEVKGNSLKIEIQGYE-KEI-KEAIRRIKELVRRVRSKYN--KRGLYRYSLDDIF 79 (190)
T ss_pred cCC-hHHHHHHHHHHHhhccCcEEEEEEeCCEEEEEEecCh-HHH-HHHHHHHHHHHHHHHHHhc--cCCceEEcHHHHH
Confidence 444 57888999999999 777765567787776543221 111 1122333322222222222 2233333222111
Q ss_pred ----CCCChHHHHHHHHhCCCeEE
Q 047789 151 ----GERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 151 ----~~Rpi~~ll~~L~~lGa~v~ 170 (171)
..=|.+.++++|+.+|.+++
T Consensus 80 r~a~~~vp~d~L~~~L~~~G~~ae 103 (190)
T PF09840_consen 80 REAGYPVPPDLLVDALKLLGYKAE 103 (190)
T ss_pred HHcCCCCCHHHHHHHHHhCCCeeE
Confidence 35678999999999999876
No 65
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=47.84 E-value=1e+02 Score=22.29 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEE---eeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHH
Q 047789 55 LCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEF---NERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIG 131 (171)
Q Consensus 55 ~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~---~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~ 131 (171)
.++++++-+++. =++++-++.+-..+..+.|+++|.++.- ...+=++.+... .|.+ . ..++|..
T Consensus 9 ~~yvvL~n~Td~--Gaktlke~p~R~~av~~~les~G~k~~~~y~T~GeYD~V~i~E------apDd-a----~~~~~~l 75 (104)
T COG4274 9 MTYVVLSNFTDQ--GAKTLKETPKRAAAVRALLESMGGKVKEQYWTLGEYDVVAIVE------APDD-A----VATRFSL 75 (104)
T ss_pred hhhhhhhhccHh--HHHHHhhCHHHHHHHHHHHHHcCcEEEEEEEeeccccEEEEEe------cCCH-H----HHHHHHH
Confidence 455566666532 1334444223446788999999999751 001112221111 1111 1 2234555
Q ss_pred HHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCC
Q 047789 132 PLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALG 166 (171)
Q Consensus 132 ~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lG 166 (171)
.+.++ |..+.+ .|+.=|++.+++.|++++
T Consensus 76 ~l~s~-GnvRt~-----TL~Afp~~~~~~~lkk~~ 104 (104)
T COG4274 76 ALASR-GNVRTV-----TLRAFPVDAMLEILKKMA 104 (104)
T ss_pred HHHhc-CCeEEE-----eeccCCHHHHHHHHhhcC
Confidence 66653 554554 678899999999999874
No 66
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=44.52 E-value=62 Score=29.21 Aligned_cols=79 Identities=15% Similarity=0.247 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEee---eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE---RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGER 153 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~---~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~R 153 (171)
.+++..+.+++++-|-.++|+. ++..+-++++++.+. ..| ..+.|++|++| ..+..+|+-.+...
T Consensus 53 ~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~----------niS-~~~a~ivAa~G-v~VaKhg~R~lss~ 120 (440)
T PRK05820 53 RPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGD----------KIS-LMLAPMVAACG-GYVPMISGRGLGHT 120 (440)
T ss_pred HHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCc----------cHH-HHHHHHHHhCC-CCEEeeCCCCCCCc
Confidence 3788899999999999887421 123455566654322 111 13358888776 57888887555432
Q ss_pred ChHHHHHHHHhC-CCeE
Q 047789 154 PVDLYVRGLRAL-GAAV 169 (171)
Q Consensus 154 pi~~ll~~L~~l-Ga~v 169 (171)
- --.|.|+.+ |+++
T Consensus 121 ~--GTaD~LE~LpG~~v 135 (440)
T PRK05820 121 G--GTLDKLEAIPGYRA 135 (440)
T ss_pred c--cHHHHHHhCCCCCC
Confidence 1 156666666 6655
No 67
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=43.47 E-value=2.1e+02 Score=24.80 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=33.4
Q ss_pred EEEeCCCccceE--EEccCCHHHH--H-HHHHHHhhCCCeEE--Ee---eCCCCC--hHH--HHHHHHHHHcCCe
Q 047789 33 LTITGPTQLSGH--VPISGSKNSS--L-CLLAATLLCSNSCL--LH---NVPTGL--SDT--KTMLSILRLLGAK 93 (171)
Q Consensus 33 ~~V~~~~~l~g~--i~vpgsKS~a--~-r~l~aAaLa~g~~~--I~---n~~~~s--~Dv--~~~l~~L~~lGa~ 93 (171)
+...|+....|+ +.+..+-|.+ . .+|.++.+++++++ |+ |++. + -|. ..++-+|+.||+.
T Consensus 70 l~F~PG~i~gG~~~~d~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~-spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 70 LIYKPGLITGGVLNHDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTG-DPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred EEEECCCccCCcEEEeCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCC-CCCHHHHHHHHHHHHHHcCCC
Confidence 566666533443 3444444443 3 44555666777544 44 4443 3 232 4588889999983
No 68
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=41.77 E-value=1.1e+02 Score=26.41 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=36.3
Q ss_pred EEEeCCCccceE--EEcc--CCHHHHH-HHHHHHhhCCCeEEE--e---eCCCCC--hHH--HHHHHHHHHcCCeEE
Q 047789 33 LTITGPTQLSGH--VPIS--GSKNSSL-CLLAATLLCSNSCLL--H---NVPTGL--SDT--KTMLSILRLLGAKIE 95 (171)
Q Consensus 33 ~~V~~~~~l~g~--i~vp--gsKS~a~-r~l~aAaLa~g~~~I--~---n~~~~s--~Dv--~~~l~~L~~lGa~v~ 95 (171)
+...|+.-..|+ +.+. ||-++-. .+|.++++++++++| + |++. + -|. ..++-+|+.||+.++
T Consensus 70 l~F~Pg~i~gG~~~~d~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~-sPsvD~~~~v~lp~l~~~G~~~~ 145 (338)
T cd00295 70 FIFRPGNIIGGDVRFACGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNE-AIGADFIRRSLEPLLAKIFIHGD 145 (338)
T ss_pred EEEECCcccCCeEEEeCCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCC-CCCHHHHHHHHHHHHHHhCCccc
Confidence 566666544443 4444 4555444 445566668885554 4 4443 3 232 468899999998764
No 69
>PRK08136 glycosyl transferase family protein; Provisional
Probab=41.65 E-value=1e+02 Score=26.51 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC-C--EEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERN-K--EILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGER 153 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~-~--~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~R 153 (171)
.+++..+.+++++.-..+. ... . .+-+.|.+++..+ ..+.+.+ .-++|..| .++..+|...+..+
T Consensus 56 ~eElaG~~~a~~~~~~~~~--~~~~~~~~iD~~gtgGd~~t--~nist~a-------A~vlA~~G-~~V~kHGnr~vssk 123 (317)
T PRK08136 56 EAEMLGFLDAMQAHTIPLT--PPAGRPMPVVIPSYNGARKQ--ANLTPLL-------ALLLAREG-VPVLVHGVSEDPTR 123 (317)
T ss_pred HHHHHHHHHHHHHhCCcCC--CCCCCCceEEeCCCCCCCCC--cChHHHH-------HHHHHHCC-CeEEEECCCCCCCc
Confidence 3777889999998887664 322 1 2334444443221 1111122 23455555 58899999887765
Q ss_pred ChHHHHHHHHhCCCeEE
Q 047789 154 PVDLYVRGLRALGAAVE 170 (171)
Q Consensus 154 pi~~ll~~L~~lGa~v~ 170 (171)
-...+.|++||+++.
T Consensus 124 --~gsadvleaLGi~~~ 138 (317)
T PRK08136 124 --VTSAEIFEALGIPPT 138 (317)
T ss_pred --ccHHHHHHHcCCCCC
Confidence 456899999998864
No 70
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=39.94 E-value=56 Score=28.55 Aligned_cols=63 Identities=24% Similarity=0.338 Sum_probs=38.6
Q ss_pred EEEeCCCccce--EEEccCCHHHHH---HHHHHHhhCCCeEEEe--e---CCCCC---hHH-HHHHHHHHHcCCeEEE
Q 047789 33 LTITGPTQLSG--HVPISGSKNSSL---CLLAATLLCSNSCLLH--N---VPTGL---SDT-KTMLSILRLLGAKIEF 96 (171)
Q Consensus 33 ~~V~~~~~l~g--~i~vpgsKS~a~---r~l~aAaLa~g~~~I~--n---~~~~s---~Dv-~~~l~~L~~lGa~v~~ 96 (171)
+...|+.-..| ++.+...+|.+. .+|.++++++++++|+ + ++. + |-+ ..++.+|++||.+.++
T Consensus 74 l~F~Pg~i~gG~~~~digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~-aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 74 LVFRPGKIRGGDYRVDIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPW-APPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred EEEeccceeCceEEEEecCCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCC-CCCcchhhhhHHHHHHhhccceEE
Confidence 45555553333 466775566543 5566666788876654 3 233 2 333 4689999999987764
No 71
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=38.69 E-value=5.2 Score=24.19 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=7.7
Q ss_pred CccccccCCc
Q 047789 4 PFNYSLFNSP 13 (171)
Q Consensus 4 ~~~~~~~~~~ 13 (171)
+|.|.|||-|
T Consensus 23 ~fay~WfnLQ 32 (44)
T PF10524_consen 23 AFAYTWFNLQ 32 (44)
T ss_pred HHHHHHHhHH
Confidence 4788999953
No 72
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=38.51 E-value=51 Score=21.82 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=18.0
Q ss_pred HHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 83 MLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 83 ~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
+..+.+.||++|+|+.+.+++.+...
T Consensus 9 l~~i~~~lg~~v~~d~~~~~v~i~~~ 34 (93)
T PF07833_consen 9 LRFIAEALGAKVSWDNKTKTVTITKG 34 (93)
T ss_dssp HHHHHHHHT-EEEEETTTTEEEEEET
T ss_pred HHHHHHHcCCEEEEEcCCcEEEEEee
Confidence 45677899999997545677887653
No 73
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=37.21 E-value=37 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=26.9
Q ss_pred CcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 139 EAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 139 ~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
...+.++|++.+-.+.+.++++.|++.|..+.
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~ 104 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFA 104 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEE
Confidence 34688999999877779999999999998764
No 74
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=36.35 E-value=66 Score=29.07 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEee---eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE---RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGER 153 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~---~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~R 153 (171)
.+++..+.+++.+.|..++|+. .+..+-++++++.+.. .| ..+.|++|++| ..+.-+|+-.+...
T Consensus 52 ~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~n----------iS-t~~apivAA~G-v~VaKhgnR~iss~ 119 (437)
T TIGR02643 52 RDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGDV----------VS-LMLGPIVAACG-GYVPMISGRGLGHT 119 (437)
T ss_pred HHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCcc----------hh-HHHHHHHHhCC-CCeeeecCCCcCCC
Confidence 3788899999999999988421 1334556666554321 12 24458888776 46777776444321
Q ss_pred ChHHHHHHHHhC-CCeE
Q 047789 154 PVDLYVRGLRAL-GAAV 169 (171)
Q Consensus 154 pi~~ll~~L~~l-Ga~v 169 (171)
.-=+|.|+.+ |+++
T Consensus 120 --~GTaD~LEalpG~~v 134 (437)
T TIGR02643 120 --GGTLDKLEAIPGYDI 134 (437)
T ss_pred --CchHHHHHhCCCCCC
Confidence 1124445555 5443
No 75
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=35.86 E-value=58 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=32.8
Q ss_pred cce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHH----HHHHHHHHHcCCeEE
Q 047789 41 LSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDT----KTMLSILRLLGAKIE 95 (171)
Q Consensus 41 l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv----~~~l~~L~~lGa~v~ 95 (171)
+.| -+++.--|+.+ --+..|++.+++.-. .+|+ +.+++.|+.+|.++.
T Consensus 42 FpGlv~Rl~ePk~a~------LIF~SGK~VcTGaKs-~ed~~~av~~~~~~L~~~g~~~~ 94 (185)
T COG2101 42 FPGLVYRLEEPKTAA------LIFRSGKVVCTGAKS-VEDVHRAVKKLAKKLKDGGIDID 94 (185)
T ss_pred CCeeEEEecCCcceE------EEEecCcEEEeccCc-HHHHHHHHHHHHHHHHhcCcCcC
Confidence 555 34666666521 122688999999887 6777 457788889888876
No 76
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.37 E-value=47 Score=23.57 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeCCEEE
Q 047789 78 SDTKTMLSILRLLGAKIEFNERNKEIL 104 (171)
Q Consensus 78 ~Dv~~~l~~L~~lGa~v~~~~~~~~~~ 104 (171)
+|-+.+.+.|+++|..|+ .+++.++
T Consensus 12 ~~~dri~~~l~e~g~~v~--~eGD~iv 36 (96)
T COG4004 12 PDPDRIMRGLSELGWTVS--EEGDRIV 36 (96)
T ss_pred CCHHHHHHHHHHhCeeEe--ecccEEE
Confidence 344589999999999888 6666443
No 77
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=31.16 E-value=1.9e+02 Score=23.30 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCC-hhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC----------
Q 047789 82 TMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPC-LGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI---------- 150 (171)
Q Consensus 82 ~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~-~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l---------- 150 (171)
.+.+-|+.-|++|+ .+++.+.|.-+..-.+..+ .++-......+.-+..++....+..+.|.|...-
T Consensus 87 ~l~~~l~~~gv~v~--~~g~~~~l~~~~~i~F~~~sa~L~~~~~~~L~~ia~~L~~~p~~~I~I~GhTD~~G~~~~N~~L 164 (219)
T PRK10510 87 KLRDKMRGTGVSVT--RSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRL 164 (219)
T ss_pred HHHHHhhcCCcEEE--EcCCeEEEEcCCCceeCCCCcccCHHHHHHHHHHHHHHHhCCCceEEEEEecCCCCChHHHHHH
Confidence 45666777789888 7777777753321112222 2233334444444455555454445667664332
Q ss_pred CCCChHHHHHHHHhCCCe
Q 047789 151 GERPVDLYVRGLRALGAA 168 (171)
Q Consensus 151 ~~Rpi~~ll~~L~~lGa~ 168 (171)
.++|-+.+.+.|.+.|+.
T Consensus 165 S~~RA~aV~~~L~~~Gi~ 182 (219)
T PRK10510 165 SQQRADSVASALITQGVD 182 (219)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 246788888888888864
No 78
>PF10940 DUF2618: Protein of unknown function (DUF2618); InterPro: IPR021237 This bacterial family of proteins has no known function. The sequences within the family are highly conserved.
Probab=29.49 E-value=19 Score=21.21 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=10.4
Q ss_pred CCccccccCCcCc
Q 047789 3 NPFNYSLFNSPQT 15 (171)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (171)
+-|.|++||++-+
T Consensus 22 ~~Fd~~~f~s~~~ 34 (40)
T PF10940_consen 22 SCFDFSFFNSQSS 34 (40)
T ss_pred cccchhhhhccCC
Confidence 5699999998654
No 79
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=28.66 E-value=1.6e+02 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHcCCeEEEeeeCCEEEEE
Q 047789 78 SDTKTMLSILRLLGAKIEFNERNKEILVN 106 (171)
Q Consensus 78 ~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~ 106 (171)
++.....+.|+++|+.+|. ....-+.|+
T Consensus 65 ~~~~~v~~~l~~lG~~~E~-~~~~~lav~ 92 (117)
T PF14085_consen 65 DDIEAVREELEALGCTVEG-FSERMLAVD 92 (117)
T ss_pred hhHHHHHHHHHHcCCeEEc-cCCCEEEEE
Confidence 3578899999999999994 223445554
No 80
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=27.31 E-value=37 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.2
Q ss_pred EEEecCCCCCCCCChHHHHHHHHhCCCeE
Q 047789 141 VVGLPGGCDIGERPVDLYVRGLRALGAAV 169 (171)
Q Consensus 141 ~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v 169 (171)
-+++.|++ +..+.+.++++.+++.|..+
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCCCE
Confidence 47888888 66667888888888888765
No 81
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=27.20 E-value=1.7e+02 Score=21.19 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=23.3
Q ss_pred CcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 139 EAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 139 ~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+..+.+.|-..=..++-..+.+.|++.|+.++
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~ve 85 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVE 85 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEE
Confidence 34466666444456777788999999999886
No 82
>PLN02356 phosphateglycerate kinase
Probab=26.59 E-value=1.7e+02 Score=26.23 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=49.8
Q ss_pred ccCCcCccccccccchhhhcccccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHH
Q 047789 9 LFNSPQTQKPQIRTQTTQIREAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILR 88 (171)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~ 88 (171)
|+--+.-|..-+.|+|....++....-.+...-.|.|..++|=|.+.-+-.+|+..+=+++|-=... ... .-+++++
T Consensus 71 ~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~-~s~--~K~~~ir 147 (423)
T PLN02356 71 LGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDD-VAI--EKSQILE 147 (423)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCC-CcH--HHHHHHH
Confidence 4444555555566666666665443332222234466667787777666666666554666653333 333 4578999
Q ss_pred HcCCeEE
Q 047789 89 LLGAKIE 95 (171)
Q Consensus 89 ~lGa~v~ 95 (171)
.+||+|.
T Consensus 148 ~~GAeVi 154 (423)
T PLN02356 148 ALGATVE 154 (423)
T ss_pred HcCCEEE
Confidence 9999986
No 83
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=26.46 E-value=1.8e+02 Score=24.06 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=28.3
Q ss_pred hhcCCcEEEecCCCCCCCCChHHHHHHHHhCCC-eE
Q 047789 135 ARFGEAVVGLPGGCDIGERPVDLYVRGLRALGA-AV 169 (171)
Q Consensus 135 a~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa-~v 169 (171)
+..+...+.+.|++.+-...+..+++.+++.|. ++
T Consensus 53 ~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v 88 (302)
T TIGR02668 53 SEFGVRKVKITGGEPLLRKDLIEIIRRIKDYGIKDV 88 (302)
T ss_pred HHcCCCEEEEECcccccccCHHHHHHHHHhCCCceE
Confidence 335555788999999988889999999999887 44
No 84
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=26.15 E-value=88 Score=21.02 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=16.6
Q ss_pred EEEecCCCCCCCCChHHHHHHHHhCCCeE
Q 047789 141 VVGLPGGCDIGERPVDLYVRGLRALGAAV 169 (171)
Q Consensus 141 ~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v 169 (171)
.+++....-|+-||...+++..+++..+|
T Consensus 5 ~~~i~~~~GlHaRPA~~lv~~a~~f~~~i 33 (82)
T PRK13782 5 RVEVSLKTGLQARPAALFVQEANRFHADI 33 (82)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCEE
Confidence 34455555555566666666666665555
No 85
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=25.04 E-value=2.7e+02 Score=20.33 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=47.9
Q ss_pred EEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEE--cCCCCCCCCChhhhchhhHHHHhHHHHhhhcCC----
Q 047789 68 CLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVN--TDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGE---- 139 (171)
Q Consensus 68 ~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~--~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~---- 139 (171)
..|-++++.+ +.-+.+..+|+..|.... ..++.|. +.+.+-...-.|+. ++.++++++.+
T Consensus 12 ~~ivGl~~~av~esr~Rv~~al~~~g~~~p----~~~i~VNlap~~l~k~g~~~DLa--------IA~ailsa~~~~~~~ 79 (121)
T PF13541_consen 12 FNIVGLPDTAVKESRERVRSALKNSGFPFP----NQDITVNLAPADLKKEGPAFDLA--------IAIAILSAFGQIPIP 79 (121)
T ss_pred eEEecCchHHHHHHHHHHHHHHHhcCCCCC----cceeeeEEEeCCEEEeeeeehHH--------HHHHHHHhCCCcccC
Confidence 5566666622 344678889999887754 4444443 33222111112221 22345554332
Q ss_pred cEEEecCCCCCC-----CCChHHHHHHHHhCCCe
Q 047789 140 AVVGLPGGCDIG-----ERPVDLYVRGLRALGAA 168 (171)
Q Consensus 140 ~~~~i~G~~~l~-----~Rpi~~ll~~L~~lGa~ 168 (171)
..+.+.|+-.|. -+-+.+.+.+.+++|.+
T Consensus 80 ~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~ 113 (121)
T PF13541_consen 80 EDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFK 113 (121)
T ss_pred CCEEEEEEecCCccEEecCcHHHHHHHHHHCCCC
Confidence 244556655553 26678888888999864
No 86
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=24.02 E-value=2.3e+02 Score=20.13 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=25.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHc-CCeEEEeeeCCEEEEEcC
Q 047789 67 SCLLHNVPTGLSDTKTMLSILRLL-GAKIEFNERNKEILVNTD 108 (171)
Q Consensus 67 ~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~v~~~~~~~~~~I~~~ 108 (171)
-+.|+|++....|...++..|+.. |+..+ ..++.+.|+|.
T Consensus 40 VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgt--vk~~~IeiQGD 80 (101)
T TIGR01158 40 VTIIEGLDLSDIDLKELAKELKSKCGCGGT--VKDGVIEIQGD 80 (101)
T ss_pred EEEEeCCcCchhhHHHHHHHHHHHhcCCee--EeCCEEEEeCc
Confidence 466778875235666676666655 55555 34667788875
No 87
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=23.45 E-value=1.9e+02 Score=18.32 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=23.8
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHcCCeEE
Q 047789 66 NSCLLHNVPTGLSDTKTMLSILRLLGAKIE 95 (171)
Q Consensus 66 g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~ 95 (171)
|.++|-..+. ..+...+.++|++.|+.++
T Consensus 1 ~~v~ly~~~~-C~~C~ka~~~L~~~gi~~~ 29 (73)
T cd03027 1 GRVTIYSRLG-CEDCTAVRLFLREKGLPYV 29 (73)
T ss_pred CEEEEEecCC-ChhHHHHHHHHHHCCCceE
Confidence 3566667777 7888999999999999877
No 88
>PF13573 SprB: SprB repeat
Probab=23.15 E-value=37 Score=19.51 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=9.4
Q ss_pred CCCccccccCCc
Q 047789 2 QNPFNYSLFNSP 13 (171)
Q Consensus 2 ~~~~~~~~~~~~ 13 (171)
..||+|.|.|..
T Consensus 25 ~~pY~y~w~~~~ 36 (37)
T PF13573_consen 25 TGPYTYSWSNGA 36 (37)
T ss_pred CcCEEEEEcCCC
Confidence 469999998753
No 89
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=1.9e+02 Score=21.57 Aligned_cols=39 Identities=26% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 132 PLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 132 ~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
++++.....++.+.|...-.+.|-..+...|++.|+.++
T Consensus 62 ~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve 100 (127)
T COG3737 62 RVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVE 100 (127)
T ss_pred HHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccc
Confidence 566644555777888766667888999999999999876
No 90
>PRK06824 translation initiation factor Sui1; Validated
Probab=21.32 E-value=2.2e+02 Score=20.95 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=26.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHH-HcCCeEEEeeeCCEEEEEcC
Q 047789 67 SCLLHNVPTGLSDTKTMLSILR-LLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 67 ~~~I~n~~~~s~Dv~~~l~~L~-~lGa~v~~~~~~~~~~I~~~ 108 (171)
.+.|.+++....|...+...|+ .+|+--+ ..++.+.|+|.
T Consensus 57 VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGt--vkd~~IeiQGD 97 (118)
T PRK06824 57 VTVITGVPLAEDALKELAKELKRRCGTGGT--LKDGVIEIQGD 97 (118)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHHhcCCce--EecCEEEEcCc
Confidence 5777888752456666777776 4465555 34677888875
No 91
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.65 E-value=1.4e+02 Score=21.13 Aligned_cols=39 Identities=23% Similarity=-0.002 Sum_probs=24.7
Q ss_pred HHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 132 PLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 132 ~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
.++.......+.+.|-..-...+...+.+.|++.|+.++
T Consensus 46 ~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve 84 (110)
T PF04430_consen 46 ELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVE 84 (110)
T ss_dssp HHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEE
T ss_pred HHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEE
Confidence 444432334555655444467888999999999999886
No 92
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=20.45 E-value=94 Score=17.99 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHcCCeEE
Q 047789 78 SDTKTMLSILRLLGAKIE 95 (171)
Q Consensus 78 ~Dv~~~l~~L~~lGa~v~ 95 (171)
.++..+.+++++||.+|+
T Consensus 21 setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 21 SETIYLFKCISDMGLNVD 38 (38)
T ss_dssp HHHHHHHHHHHTTT-EEE
T ss_pred cceEeHHHHHHHhCCCCC
Confidence 456688899999998764
No 93
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.34 E-value=31 Score=24.03 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=9.9
Q ss_pred CCccccccCCcC
Q 047789 3 NPFNYSLFNSPQ 14 (171)
Q Consensus 3 ~~~~~~~~~~~~ 14 (171)
+||+-+|||.+-
T Consensus 56 ~p~avawf~~~~ 67 (93)
T COG4317 56 EPFAVAWFNAGC 67 (93)
T ss_pred CchhHHHHhcCC
Confidence 689999999753
No 94
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=20.12 E-value=1.8e+02 Score=25.20 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=28.7
Q ss_pred HhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCC
Q 047789 133 LLARFGEAVVGLPGGCDIGERPVDLYVRGLRALG 166 (171)
Q Consensus 133 lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lG 166 (171)
+.+.+|...+.++|++.+-++-+..++..|.++|
T Consensus 54 ~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~ 87 (322)
T COG2896 54 AFAELGVEKVRLTGGEPLLRKDLDEIIARLARLG 87 (322)
T ss_pred HHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcc
Confidence 3344677899999999999999999999999874
Done!