Query 047789
Match_columns 171
No_of_seqs 107 out of 1184
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvw_A UDP-N-acetylglucosamine 100.0 2.9E-30 9.8E-35 225.3 15.0 138 29-170 9-146 (425)
2 3r38_A UDP-N-acetylglucosamine 100.0 9.7E-30 3.3E-34 223.9 14.7 138 30-170 25-163 (454)
3 3rmt_A 3-phosphoshikimate 1-ca 100.0 1.5E-29 5.3E-34 222.8 15.5 138 29-170 3-142 (455)
4 4fqd_A NIKO protein; beta/alph 100.0 1.9E-29 6.5E-34 223.4 14.1 138 30-170 13-156 (479)
5 3slh_A 3-phosphoshikimate 1-ca 99.9 5.7E-27 2E-31 205.6 16.7 135 33-169 6-142 (441)
6 3nvs_A 3-phosphoshikimate 1-ca 99.9 4.6E-27 1.6E-31 206.6 15.8 138 29-170 24-165 (450)
7 1ejd_A MURA, EPT, UDP-N-acetyl 99.9 3E-26 1E-30 199.4 14.2 137 30-170 1-137 (419)
8 2pqc_A 3-phosphoshikimate 1-ca 99.9 3.7E-25 1.3E-29 193.8 16.0 135 32-170 4-140 (445)
9 1rf6_A 5-enolpyruvylshikimate- 99.9 6.7E-25 2.3E-29 191.5 15.5 133 33-170 3-137 (427)
10 2o0b_A 3-phosphoshikimate 1-ca 99.9 5.3E-24 1.8E-28 187.2 13.7 128 38-170 10-141 (450)
11 3rmt_A 3-phosphoshikimate 1-ca 99.5 1.4E-14 4.8E-19 127.5 9.8 137 32-170 217-365 (455)
12 2yvw_A UDP-N-acetylglucosamine 99.5 2E-13 6.7E-18 118.9 14.3 125 33-170 152-281 (425)
13 2o0b_A 3-phosphoshikimate 1-ca 99.5 1E-13 3.4E-18 121.8 11.5 131 32-170 221-360 (450)
14 3slh_A 3-phosphoshikimate 1-ca 99.5 1.8E-13 6.3E-18 119.8 12.4 135 32-170 217-365 (441)
15 3nvs_A 3-phosphoshikimate 1-ca 99.5 1.4E-13 4.9E-18 120.7 11.4 132 32-170 247-385 (450)
16 1rf6_A 5-enolpyruvylshikimate- 99.5 4.9E-13 1.7E-17 116.4 13.0 139 31-171 212-360 (427)
17 1ejd_A MURA, EPT, UDP-N-acetyl 99.4 2.5E-12 8.5E-17 111.6 13.8 129 32-171 212-347 (419)
18 3r38_A UDP-N-acetylglucosamine 99.4 4.6E-12 1.6E-16 111.3 14.7 126 33-170 169-299 (454)
19 2pqc_A 3-phosphoshikimate 1-ca 99.3 8.1E-12 2.8E-16 109.1 12.6 137 32-170 220-368 (445)
20 4fqd_A NIKO protein; beta/alph 99.3 7E-12 2.4E-16 110.8 10.1 122 41-170 170-312 (479)
21 3tut_A RNA 3'-terminal phospha 94.9 0.13 4.5E-06 43.7 9.0 117 52-170 37-171 (358)
22 3pqv_A RCL1 protein; RTC-like, 94.2 0.093 3.2E-06 44.7 6.4 112 56-168 19-147 (365)
23 4hkm_A Anthranilate phosphorib 75.7 2.9 9.9E-05 34.9 4.4 83 77-170 55-137 (346)
24 2elc_A Trp D, anthranilate pho 69.8 11 0.00037 31.2 6.6 80 77-169 49-129 (329)
25 2tpt_A Thymidine phosphorylase 66.9 10 0.00034 32.9 5.9 77 77-169 53-135 (440)
26 3r88_A Anthranilate phosphorib 61.7 13 0.00044 31.4 5.6 83 77-170 75-158 (377)
27 1vqu_A Anthranilate phosphorib 61.5 12 0.00042 31.5 5.4 80 77-169 76-166 (374)
28 1uou_A Thymidine phosphorylase 61.1 15 0.0005 32.2 5.9 80 77-170 79-161 (474)
29 1brw_A PYNP, protein (pyrimidi 59.1 17 0.00058 31.4 5.9 80 77-170 52-133 (433)
30 3tut_A RNA 3'-terminal phospha 57.6 43 0.0015 28.1 8.0 55 50-106 301-356 (358)
31 1khd_A Anthranilate phosphorib 55.5 12 0.0004 31.3 4.2 80 77-169 62-143 (345)
32 3h5q_A PYNP, pyrimidine-nucleo 52.6 24 0.00082 30.5 5.8 80 77-170 55-136 (436)
33 2dsj_A Pyrimidine-nucleoside ( 46.0 24 0.00082 30.4 4.7 80 77-170 52-132 (423)
34 3ldt_A Outer membrane protein, 43.0 54 0.0018 24.0 5.8 85 82-168 29-124 (169)
35 2gjh_A Designed protein; oblig 41.1 33 0.0011 20.7 3.5 25 82-108 22-49 (62)
36 1o17_A Anthranilate PRT, anthr 35.0 29 0.00099 28.8 3.4 79 77-170 52-130 (345)
37 1k8b_A EIF-2-beta, probable tr 31.4 51 0.0017 19.8 3.2 39 67-108 8-52 (52)
38 2koe_A Human cannabinoid recep 25.4 12 0.00042 20.2 -0.3 15 2-16 16-30 (40)
39 4hjf_A Ggdef family protein; s 25.0 2.2E+02 0.0074 23.0 7.1 18 79-96 213-230 (340)
40 2lxi_A RNA-binding protein 10; 23.1 60 0.0021 20.7 2.7 29 66-95 2-30 (91)
41 4a4j_A Pacszia, cation-transpo 22.6 1.2E+02 0.004 17.4 4.2 29 65-95 39-67 (69)
42 2lqo_A Putative glutaredoxin R 21.4 1.8E+02 0.006 18.9 5.3 29 66-95 4-32 (92)
43 1taf_A TFIID TBP associated fa 21.3 55 0.0019 20.8 2.1 16 78-93 2-17 (68)
44 2k1s_A Inner membrane lipoprot 21.2 39 0.0013 24.2 1.6 85 82-168 9-104 (149)
45 3ke2_A Uncharacterized protein 20.2 44 0.0015 23.7 1.6 54 52-107 18-82 (117)
No 1
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=99.97 E-value=2.9e-30 Score=225.28 Aligned_cols=138 Identities=41% Similarity=0.713 Sum_probs=127.0
Q ss_pred ccccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 29 EAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 29 ~m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
-|+++.|+++++++|+|++|||||++||+|++|+|++|+++|+|++. ++|+..++++|++||++|+ +++++++|++
T Consensus 9 ~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~~~i~n~~~-~~D~~~~~~~l~~lG~~i~--~~~~~~~i~~- 84 (425)
T 2yvw_A 9 YRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPD-LLDVRNTLLLLRELGAELE--FLNNTVFINP- 84 (425)
T ss_dssp CCCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGCSSCEEEESCCC-SHHHHHHHHHHHHTTCEEE--EETTEEEEEC-
T ss_pred CcceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCc-hHHHHHHHHHHHHCCCEEE--EeCCEEEEEC-
Confidence 47778899888899999999999999999999999999999999999 9999999999999999998 6778999999
Q ss_pred CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+......|.+.++.+|+++||++|++++++++.+.++|+|+|++|||++|++.|++|||+|+
T Consensus 85 ~~~~~~~p~~~~~~~rts~~~l~~l~a~~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~ 146 (425)
T 2yvw_A 85 SINSFITNQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVE 146 (425)
T ss_dssp CCCCCEECHHHHHHCGGGGGGHHHHHHHHSEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEE
T ss_pred CCCCCCCchhhhcccchHHHHHHHHhccCCcEEEEECCCcccccCCHHHHHHHHHHCCCEEE
Confidence 65445556677899999999999999988767899999999999999999999999999996
No 2
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=99.96 E-value=9.7e-30 Score=223.85 Aligned_cols=138 Identities=43% Similarity=0.716 Sum_probs=128.5
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhC-CCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLC-SNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa-~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
|+++.|+++.+++|+|++|||||+++|+|++|+|+ +|+++|+|++. ++|++.|+++|++||++|+ +++++++|++.
T Consensus 25 m~~~~i~~~~~l~G~v~vpgsKs~~~~~l~aa~La~~g~s~i~n~~~-~~D~~~~~~~l~~lG~~i~--~~~~~~~i~~~ 101 (454)
T 3r38_A 25 MEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPN-LSDVFTINEVLKYLNADVS--FVNDEVTVDAT 101 (454)
T ss_dssp TCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGEEESCEEEESCCC-CHHHHHHHHHHHHTTCEEE--EETTEEEEECC
T ss_pred cceEEEeCCCCceEEEEcCCCHHHHHHHHHHHHhCCCCeEEECCCCC-cHHHHHHHHHHHHCCCEEE--EECCEEEEECC
Confidence 77899999889999999999999999999999999 99999999999 9999999999999999999 67789999998
Q ss_pred CCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+......|.+.++.+|++++|++|++++++++.+.++|+|+|++|||++++++|++|||+|+
T Consensus 102 ~~~~~~~~~~~~~~~Ras~l~l~~l~a~~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~ 163 (454)
T 3r38_A 102 GEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVK 163 (454)
T ss_dssp SCCCCEECSHHHHHCGGGGGGHHHHHHHHSEEEEECCCCCSSSSCCSHHHHHHHHHTTCEEE
T ss_pred CCCCCcCChhHhhccchHHHHHHHHHhCCCCeEEEeCCCcccccCCHHHHHHHHHHCCCEEE
Confidence 76556667777889999999999999988777899999999999999999999999999986
No 3
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=99.96 E-value=1.5e-29 Score=222.82 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=125.0
Q ss_pred ccccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 29 EAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 29 ~m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
||+++.|+++.+++|+|++|||||+++|+|++|+|++|+++|+|++. ++|+..|+++|++||++|+ +++++++|++.
T Consensus 3 m~~~~~i~~~~~l~G~v~vpgsKs~s~Rali~AaLa~g~s~i~n~~~-~~Dv~~~~~~L~~lG~~i~--~~~~~~~i~g~ 79 (455)
T 3rmt_A 3 MENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLP-GADCLSTISCFQKLGVSIE--QAEERVTVKGK 79 (455)
T ss_dssp -CCEEEECCCSCEEEEECCCBCHHHHHHHHHHHHHSBSCEEEESCCC-SHHHHHHHHHHHTTTCEEE--EETTEEEEECC
T ss_pred CCceEEEcCCCcceEEEEecCcHHHHHHHHHHHHhcCCCEEEccCCc-cHHHHHHHHHHHHcCCeEE--ecCCEEEEeCC
Confidence 56789999999999999999999999999999999999999999999 9999999999999999999 77889999998
Q ss_pred CCCCCCCChh--hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLG--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~--~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+......|++ .++++++++||+++++++.+ +.+.++|+|+|++|||++|+++|++|||+|+
T Consensus 80 ~~~~~~~~~~~i~~g~SGt~mRll~g~la~~~-~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~ 142 (455)
T 3rmt_A 80 GWDGLREPSDILDVGNSGTTTRLILGILSTLP-FHSVIIGDESIGKRPMKRVTEPLKSMGAQID 142 (455)
T ss_dssp CGGGCCCCSSCEECTTCHHHHHHHHHHHTTSS-SEEEEECCTTGGGSCCHHHHHHHHHTTCEEE
T ss_pred CCCCcCCCcceeecccccccHHHHHHHHHcCC-cEEEEeCCcccccCCHHHHHHHHHHCCCEEE
Confidence 6444445554 37999999999999998754 6899999999999999999999999999996
No 4
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=99.96 E-value=1.9e-29 Score=223.39 Aligned_cols=138 Identities=28% Similarity=0.433 Sum_probs=120.3
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEee--eCCEEEEEc
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNE--RNKEILVNT 107 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~--~~~~~~I~~ 107 (171)
+..+.|+++.+++|+|++|||||++||+|++|+|++|+++|+|++. ++||..|+++|++||++|+ + ++++++|++
T Consensus 13 ~~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~-s~D~~~~~~~l~~lG~~i~--~~~~~~~~~i~g 89 (479)
T 4fqd_A 13 EPLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPD-IVETAVLGEIFRAAGAHAH--YDGADETFTVDA 89 (479)
T ss_dssp CEEEEEECCCCBCSEEECCBCHHHHHHHHHHHTTCSSEEEEESCCC-SHHHHHHHHHHHHTTCEEE--EETTTTEEEEEC
T ss_pred CceEEEeCCCcceEEEEcCCcHHHHHHHHHHHHhcCCCEEEccCCC-chhHHHHHHHHHHcCCEEE--EecCCCEEEEEC
Confidence 5678999999999999999999999999999999999999999999 9999999999999999999 6 678999999
Q ss_pred CCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC----CCChHHHHHHHHhCCCeEE
Q 047789 108 DGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG----ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~----~Rpi~~ll~~L~~lGa~v~ 170 (171)
.+......|.++++.+|+++||++|++++++.+.+.++|+|+|+ +|||++|+++|++|||+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~ts~~~l~~l~a~~~~~~~~l~G~~~l~~~~~~RPi~~~~~~L~~lGa~i~ 156 (479)
T 4fqd_A 90 SAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSASGGCPIGEGPRGRPDEHLLDVMGRFGVTTR 156 (479)
T ss_dssp TTCCCSCCCHHHHTTCSGGGGGHHHHHHHTSEEEECC------------CCCHHHHHHHHTTTCEEE
T ss_pred CCCCCCCCChhHhcccchhHHHHHHHHhcCCCeEEEEeCCcccccCCCCCChHHHHHHHHHCCCEEE
Confidence 87665667777888999999999999998776788999999999 9999999999999999996
No 5
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=99.95 E-value=5.7e-27 Score=205.61 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=118.9
Q ss_pred EEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCC
Q 047789 33 LTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGR 112 (171)
Q Consensus 33 ~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~ 112 (171)
+.|+++.+++|+|++|||||++||+|++|+|++|+++|+|++. ++||..|+++|++||++|+++.+++.++|++.+...
T Consensus 6 ~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~-~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~~~~~~~ 84 (441)
T 3slh_A 6 YQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLM-GADNLAMVSALQQMGASIQVIEDENILVVEGVGMTG 84 (441)
T ss_dssp EEECCCSCCEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCC-SHHHHHHHHHHHHTTCEEEEEGGGTEEEEECCCTTC
T ss_pred EEEeCCCcceEEEEcCCcHHHHHHHHHHHHHcCCCEEEcCCCC-cHHHHHHHHHHHHcCCEEEEecCCCEEEEeccccCC
Confidence 7899999999999999999999999999999999999999999 999999999999999999941145699999986443
Q ss_pred CCCChh--hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeE
Q 047789 113 AEPCLG--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAV 169 (171)
Q Consensus 113 ~~~~~~--~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v 169 (171)
...+.. .+.++++++||+.+++++. .+.+.++|+|+|++|||++|+++|++|||+|
T Consensus 85 ~~~~~~~i~~g~sgtt~r~l~g~l~~~-~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i 142 (441)
T 3slh_A 85 LQAPPEALDCGNSGTAIRLLSGLLAGQ-PFNTVLTGDSSLQRRPMKRIIDPLTLMGAKI 142 (441)
T ss_dssp CCCCSSCEECTTCHHHHHHHHHHHTTS-SSEEEEECCTTGGGSCCHHHHHHHHHTTCEE
T ss_pred CCCCcceeeeccccccHHHHHHHHHhC-CCEEEEeCCcccccCCHHHHHHHHHHcCCEE
Confidence 444433 3688999999999998864 3578899999999999999999999999998
No 6
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=99.95 E-value=4.6e-27 Score=206.58 Aligned_cols=138 Identities=27% Similarity=0.292 Sum_probs=121.4
Q ss_pred ccccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCC--EEEEE
Q 047789 29 EAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNK--EILVN 106 (171)
Q Consensus 29 ~m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~--~~~I~ 106 (171)
.|+++.|+++.+++|+|++|||||+++|+|++|+|++|+++|+|++. ++|+..++++|++||++|+ ++++ .++|+
T Consensus 24 ~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~-~~D~~~~~~~L~~lG~~i~--~~~~~~~~~i~ 100 (450)
T 3nvs_A 24 AMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLD-SDDIRHMLNALTKLGVNYR--LSADKTTCEVE 100 (450)
T ss_dssp -CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCC-SHHHHHHHHHHHHTTCEEE--ECTTSSCEEEE
T ss_pred ccceEEEcCCCcceEEEEeCCcHHHHHHHHHHHHHcCCCEEEcCCCc-cHHHHHHHHHHHHcCCeEE--EcCCccEEEEe
Confidence 47889999999999999999999999999999999999999999999 9999999999999999999 5554 59999
Q ss_pred cCCCCC-CCCChhh-hchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 107 TDGVGR-AEPCLGE-MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 107 ~~~~~~-~~~~~~~-~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
|.+... ...+.++ ++++++++||++|++++ +++.+.++|+|+|++|||++++++|++|||+|+
T Consensus 101 g~~~~~~~~~~~~l~~g~sgt~~R~l~~~la~-~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~ 165 (450)
T 3nvs_A 101 GLGQAFHTTQPLELFLGNAGTAMRPLAAALCL-GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIE 165 (450)
T ss_dssp CCSSCCBCSSCEEEECTTCHHHHHHHHHHTTS-SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEE
T ss_pred CCCCCcCCCCCceEEccCccchHHHHHHHHhc-CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEE
Confidence 875221 1122233 68999999999999985 678999999999999999999999999999996
No 7
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=99.94 E-value=3e-26 Score=199.36 Aligned_cols=137 Identities=39% Similarity=0.743 Sum_probs=123.6
Q ss_pred cccEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCC
Q 047789 30 AETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDG 109 (171)
Q Consensus 30 m~~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~ 109 (171)
|+++.|++++.+.|+|++|||||+++|+|++|+|++|+++|+|++. ++|+..++++|++||++|+ .++ +++|++.+
T Consensus 1 m~~~~i~~~~~l~G~v~i~gsks~~~r~Llaa~la~g~t~i~n~~~-~~dv~~t~~~L~~lGa~i~--~~~-~~~I~~~~ 76 (419)
T 1ejd_A 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQLGTKVE--RXG-SVWIDASN 76 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCC-CHHHHHHHHHHHHTTCEEE--ESS-SEEEECTT
T ss_pred CCeEEEeCCCCceEEEEecCcHHHHHHHHHHHHHCCCcEEEecCCC-cHHHHHHHHHHHHCCCEEE--Ecc-eEEEecCC
Confidence 5668888877899999999999999999999999999999999999 9999999999999999998 555 89999875
Q ss_pred CCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 VGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 ~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
......|++.++.+|+++||++|+++.+++..+.++|+++++.||++.+++.|++|||+|+
T Consensus 77 ~~~~~~~~d~~~~~ras~~l~~alla~~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~ 137 (419)
T 1ejd_A 77 VNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIK 137 (419)
T ss_dssp CCCCEECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEE
T ss_pred CCCCcCchHHhhhhhHHHHHHHHHhhcCCceEEEecCCcccCCCchHHHHHHHHHCCCEEE
Confidence 4445566777899999999999999877766888999999999999999999999999986
No 8
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=99.93 E-value=3.7e-25 Score=193.80 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=120.3
Q ss_pred cEEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCC
Q 047789 32 TLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVG 111 (171)
Q Consensus 32 ~~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~ 111 (171)
.+.|+++.++.|+|++|||||+++|+|++|+|++|+++|+|++. ++|+..++++|++||++|+ .++++++|+|.++.
T Consensus 4 pl~i~~~~~l~G~v~ipgsKs~t~r~ll~A~La~g~t~i~n~~~-~~dv~~~~~~L~~lG~~i~--~~~~~~~I~g~~~~ 80 (445)
T 2pqc_A 4 PATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLE-GEDVINTGKAMQAMGARIR--KEGDTWIIDGVGNG 80 (445)
T ss_dssp CEEEECCSCCEEEEECCBCHHHHHHHHHHHHHSEEEEEEESCCC-SHHHHHHHHHHHHTTCEEE--EETTEEEEEEECTT
T ss_pred eEEEcCCCcceEEEEcCCCHHHHHHHHHHHHhcCCcEEEccCCC-CHHHHHHHHHHHHCCCEEE--ecCCEEEEEccCCC
Confidence 57898877899999999999999999999999999999999999 9999999999999999999 66779999987544
Q ss_pred CCCCChh--hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 112 RAEPCLG--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 112 ~~~~~~~--~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
....|.. .+.++++++||++++++++ .+.+.++|+|+++.|||+.+++.|++|||+|+
T Consensus 81 ~~~~p~~~~d~~~sgt~~r~l~~~l~~~-~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~ 140 (445)
T 2pqc_A 81 GLLAPEAPLDFGNAATGCRLTMGLVGVY-DFDSTFIGDASLTKRPMGRVLNPLREMGVQVK 140 (445)
T ss_dssp CCCCCSSCEECTTCHHHHHHHHHHHHTS-SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEE
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHhcC-CcEEEEECCccCCCCChHHHHHHHHHCCCEEE
Confidence 4444332 3688999999999999865 47899999999999999999999999999986
No 9
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=99.92 E-value=6.7e-25 Score=191.45 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=117.7
Q ss_pred EEEeCCCccceEEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCC
Q 047789 33 LTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGR 112 (171)
Q Consensus 33 ~~V~~~~~l~g~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~ 112 (171)
+++++ +++.|+|++|||||+++|+|++|+|++|+++|+|++. ++|+..++++|++||++|+ .++++++|+|.+...
T Consensus 3 ~~i~~-~~l~G~v~ipgsKs~t~r~Llaa~La~g~t~I~n~~~-s~Dv~~~~~~L~~lG~~i~--~~~~~~~I~g~~~~~ 78 (427)
T 1rf6_A 3 LKTNI-RHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILR-GEDVLSTMQVFRDLGVEIE--DKDGVITVQGVGMAG 78 (427)
T ss_dssp ECCCC-CCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCC-SHHHHHHHHHHHHTTCEEE--EETTEEEEECCCSSC
T ss_pred eEEeC-CCceEEEEcCCcHHHHHHHHHHHHHcCCCEEEccCCC-CHHHHHHHHHHHHcCCeEE--ecCCEEEEECCCCCC
Confidence 56766 4699999999999999999999999999999999999 9999999999999999998 667799999875433
Q ss_pred CCCChh--hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 113 AEPCLG--EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 113 ~~~~~~--~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
...|.+ .+..+++++||+++++++.+ +.+.++|+|+++.|||+++++.|++|||+|+
T Consensus 79 ~~~p~~~id~~~sgt~~rll~a~la~~~-~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~ 137 (427)
T 1rf6_A 79 LKAPQNALNMGNSGTSIRLISGVLAGAD-FEVEMFGDDSLSKRPMDRVTLPLKKMGVSIS 137 (427)
T ss_dssp CCCCSSCEECTTCHHHHHHHHHHGGGCS-SEEEEECCTTGGGSCCHHHHHHHHHTTCEEE
T ss_pred cCCCcceeeccccchHHHHHHHHHhcCC-cEEEEeCCCccCCCCHHHHHHHHHHCCCEEE
Confidence 444433 36899999999999998654 7899999999999999999999999999986
No 10
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=99.91 E-value=5.3e-24 Score=187.19 Aligned_cols=128 Identities=24% Similarity=0.323 Sum_probs=112.0
Q ss_pred CCccceEEEccCCHHHHHHHHHHHhhCC----CeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCC
Q 047789 38 PTQLSGHVPISGSKNSSLCLLAATLLCS----NSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRA 113 (171)
Q Consensus 38 ~~~l~g~i~vpgsKS~a~r~l~aAaLa~----g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~ 113 (171)
+.+++|+|++|||||+++|+|++|+|++ |+++|+|++. ++|+..++++|++||++|+ ++++.++|++.+....
T Consensus 10 ~~~l~G~v~vpgsKs~s~R~l~~aaLa~~~~~g~~~i~~~l~-~~D~~~~~~~L~~lGa~i~--~~~~~l~I~g~~~~l~ 86 (450)
T 2o0b_A 10 PTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALR-SRDTELMLDALQTLGLRVD--GVGSELTVSGRIEPGP 86 (450)
T ss_dssp SSCCEEEECCCBCHHHHHHHHHHHHHHHHTTCCCEEEETCCC-SHHHHHHHHHHHHTTCEEE--CSSSCEEEESCCCCCT
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCCCCCeEEEecCCC-chHHHHHHHHHHHcCCEEE--EeCCEEEEECCCCCcC
Confidence 4679999999999999999999999999 9999999999 9999999999999999998 6666899998642111
Q ss_pred CCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 114 EPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 114 ~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
. ..-.+..+++++||++|+|+ ++++.+.++|+|+|++|||+.+++.|++|||+|+
T Consensus 87 ~-~~i~~g~sgts~R~l~~lla-~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~ 141 (450)
T 2o0b_A 87 G-ARVDCGLAGTVLRFVPPLAA-LGSVPVTFDGDQQARGRPIAPLLDALRELGVAVD 141 (450)
T ss_dssp T-CEEECTTCHHHHHHHHHHHT-TSSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEE
T ss_pred c-eeeeeccchhHHHHHHHHHh-cCCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEE
Confidence 1 11125788899999999998 6677899999999999999999999999999985
No 11
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=99.55 E-value=1.4e-14 Score=127.51 Aligned_cols=137 Identities=22% Similarity=0.313 Sum_probs=95.5
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhh-CCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-------CE
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLL-CSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-------KE 102 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaL-a~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-------~~ 102 (171)
.+.|+|.+.+.+ +++||||.|.+.++++||++ .+|+++|+|+...... ..++++|++|||+|+++.+. ..
T Consensus 217 ~i~I~g~~~l~~~~~~V~~D~s~Aa~~l~aaai~~gg~v~i~~~~~~~~~-~~il~~L~~mGa~i~~~~~~~~~ge~~~~ 295 (455)
T 3rmt_A 217 TVSIEGGQMLTGQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTR-AGILEVLKQMGATLAMENERVQGGEPVAD 295 (455)
T ss_dssp EEEECSCCCCBCCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTT-THHHHHHHHTTCEEEEEEEEEETTEEEEE
T ss_pred EEEEcCCccccCCeeECCCCHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHcCCEEEEcCCcccCCccceE
Confidence 588988877777 79999999999999999999 6889999999531233 57999999999999952111 13
Q ss_pred EEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC--C-CChHHHHHHHHhCCCeEE
Q 047789 103 ILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG--E-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 103 ~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~--~-Rpi~~ll~~L~~lGa~v~ 170 (171)
++|.+..+++..++...++..-... -...+++.++++.+.|.|-.+++ + +++..+.++|++||++|+
T Consensus 296 i~v~~~~l~~~~i~~~~~P~~~D~~-p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~ 365 (455)
T 3rmt_A 296 LTIETSVLQGVEIGGDIIPRLIDEI-PIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIH 365 (455)
T ss_dssp EEEECCCCBCCCEETTHHHHHGGGH-HHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEecCCceeEEEeCccCCchHHHH-HHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEE
Confidence 8888655555555433222111111 11233444678888898877665 4 899999999999999997
No 12
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=99.51 E-value=2e-13 Score=118.87 Aligned_cols=125 Identities=14% Similarity=0.228 Sum_probs=97.6
Q ss_pred EEEeCCCccce-EEEcc-CCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcC-
Q 047789 33 LTITGPTQLSG-HVPIS-GSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-KEILVNTD- 108 (171)
Q Consensus 33 ~~V~~~~~l~g-~i~vp-gsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-~~~~I~~~- 108 (171)
+.+..+ .+.| ++.+| +|++.+++++++|++++|+++|+|++. .+|+..++++|++||++|+ .++ +.+ |++.
T Consensus 152 ~~i~~~-~l~g~~i~~~~~S~~~~s~lllaa~la~g~t~i~~~~~-~~~i~~t~~~L~~~Ga~i~--~~~~~~i-I~g~~ 226 (425)
T 2yvw_A 152 VYVNLK-EKRRVHFKFDLVTVTGTENALLYLASVPEESILENIAL-EPEVMDLIEVLKKMGAHVK--VEGRSAY-VKGSE 226 (425)
T ss_dssp EEEECS-SCCCCEEECSSCCHHHHHHHHHHHTTCSSEEEEESCCC-CHHHHHHHHHHHHTTCEEE--EETTEEE-EECCS
T ss_pred EEEEec-CccceEEecccccHHHHHHHHHHHHhcCCCEEEeCCCC-CchHHHHHHHHHHCCCeEE--EcCCEEE-EeCCC
Confidence 344433 4677 99999 999999999999999999999999988 8999999999999999999 555 567 8874
Q ss_pred CCCCCCCChh-hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 109 GVGRAEPCLG-EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
.+.+. ++. ..+.+.+++++++++++ .+.+++.|. ..+|++.+++.|++|||+|+
T Consensus 227 ~l~~~--~~~v~~D~s~A~t~l~aaal~---~g~v~l~g~---~~~~~~~l~~~L~~mGa~i~ 281 (425)
T 2yvw_A 227 NLKGF--THSVIPDRIEAGTFMVGAVLT---DGEILLENA---RINHLRAVVEKLKLIGGEVV 281 (425)
T ss_dssp SCCCC--EEECCBCHHHHHHHHHHHHHT---TCEEEEESC---CGGGCHHHHHHHHHHTEEEE
T ss_pred ccCCc--cccccCchhHHHHHHHHHHhC---CCcEEEeCC---CchHHHHHHHHHHHCCCEEE
Confidence 33322 222 23556666666655543 357888885 47999999999999999986
No 13
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=99.50 E-value=1e-13 Score=121.75 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=100.3
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEcC
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
.+.|++ +++.| ++.||+|.|.+.+++++|++++|+++|+|+.... +| ..+++.|++||++|+ ..++.++|.+.
T Consensus 221 ~i~I~g-~~l~g~~~~v~~D~s~A~~~laaaa~~~g~v~i~~v~~~~~q~~-~~i~~~L~~mGa~i~--~~~d~i~v~~~ 296 (450)
T 2o0b_A 221 RWQVRP-GPVAARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPA-DHILAILRQLNAVVI--HADSSLEVRGP 296 (450)
T ss_dssp EEEECC-CCCCCCCEECCBCHHHHHHHHHHHHHHTCEEEETTCCSSCSSCH-HHHHHHHHHTTCEEE--EETTEEEEECC
T ss_pred EEEEEC-CCCcCceEEcCCCHHHHHHHHHHHHhcCCeEEECCCCcccccch-HHHHHHHHHcCCeEE--EcCCEEEEecC
Confidence 478886 56777 8999999999999999999999999999986622 23 469999999999999 77889999875
Q ss_pred C-CCCCCCChhhhchhhHHHHhHHHHhhhcCC--cEEEecCCCCCC--C-CChHHHHHHHHhCCCeEE
Q 047789 109 G-VGRAEPCLGEMRKIRGGFFVIGPLLARFGE--AVVGLPGGCDIG--E-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~s~~~l~~lla~~~~--~~~~i~G~~~l~--~-Rpi~~ll~~L~~lGa~v~ 170 (171)
. +++..++....+..- ...++++.+++ +.++|.+-.+++ + +++..+.++|++||++|+
T Consensus 297 ~~l~g~~i~~~~~~D~~----p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~i~ 360 (450)
T 2o0b_A 297 TGYDGFDVDLRAVGELT----PSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCR 360 (450)
T ss_dssp SCCCCCEEECTTCGGGH----HHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCcceeEEeCCCCHHHH----HHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCeEE
Confidence 3 544433322122221 22244444677 889999877774 5 999999999999999986
No 14
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=99.49 E-value=1.8e-13 Score=119.83 Aligned_cols=135 Identities=20% Similarity=0.314 Sum_probs=97.6
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhC-CCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCC--------
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLC-SNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNK-------- 101 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa-~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~-------- 101 (171)
.+.|++.+.+.+ +++||+|.|++.+++++|+++ +++++|+|+.. .+.-..++++|++|||+|++ +++
T Consensus 217 ~i~I~g~~~l~~~~~~V~~D~ssAa~~l~aaal~~g~~v~l~g~~~-~~~~~~~l~~L~~mGa~i~~--~~~~~~~~e~~ 293 (441)
T 3slh_A 217 SICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGV-NPTRLGVINLLKMMGADIEV--THYTEKNEEPT 293 (441)
T ss_dssp CEEEETTCCCBCCCEECCBCHHHHHHHHHHHHHSTTCEEEEEEEEC-CGGGCHHHHHHHHHTCEEEE--EEEEEETTEEE
T ss_pred EEEEcCCCccccceEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCC-CccHHHHHHHHHHcCCEEEE--cCCccccCccc
Confidence 588988766776 799999999999999999998 77999999954 22214689999999999994 332
Q ss_pred -EEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC--CC-CChHHHHHHHHhCCCeEE
Q 047789 102 -EILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI--GE-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 102 -~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l--~~-Rpi~~ll~~L~~lGa~v~ 170 (171)
.++|.+..+++..++.+.++..-...-.+ .++|.++++.++|.|-.++ ++ +++..+.++|++|||+|+
T Consensus 294 ~~i~v~~~~l~g~~i~~~~~p~~~D~~p~l-~~~aa~A~G~t~I~~i~~lR~kEsdRi~~l~~eL~kmGa~i~ 365 (441)
T 3slh_A 294 ADITVRHARLKGIDIPPDQVPLTIDEFPVL-LIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAE 365 (441)
T ss_dssp EEEEEECCCCBCCEECGGGHHHHGGGHHHH-HHHHHTSBSEEEECSCGGGGGSSSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEEecCCCCceEEecccCCCcHHHHHHH-HHHHHhCCCeEEEEeccccccccchHHHHHHHHHHHCCCEEE
Confidence 46777655655555544222111011111 3344467788989886665 45 899999999999999997
No 15
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=99.49 E-value=1.4e-13 Score=120.68 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=98.6
Q ss_pred cEEEeCCCccce--EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCC--hHHHHHHHHHHHcCCeEEEeeeCCEEEEEc
Q 047789 32 TLTITGPTQLSG--HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGL--SDTKTMLSILRLLGAKIEFNERNKEILVNT 107 (171)
Q Consensus 32 ~~~V~~~~~l~g--~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s--~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~ 107 (171)
.+.|++.+.+.+ ++.+|+|+|.+.+++++|++++|+++|+|+...+ .| ..++++|++|||+|+ .+++.++|.+
T Consensus 247 ~i~I~g~~~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~D-~~i~~~L~~mGa~i~--~~~~~i~v~~ 323 (450)
T 3nvs_A 247 EFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGD-IQFADALEKMGAQIE--WGDDYVIARR 323 (450)
T ss_dssp EEEECTTCCCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGG-GGHHHHHHHHTCEEE--ECSSEEEEEC
T ss_pred EEEEcCCccccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccch-HHHHHHHHHcCCeEE--EeCCEEEEec
Confidence 478888766653 8999999999999999999999999999986522 33 368899999999999 7788899987
Q ss_pred CCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC--CC-CChHHHHHHHHhCCCeEE
Q 047789 108 DGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI--GE-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l--~~-Rpi~~ll~~L~~lGa~v~ 170 (171)
..+++..++.+.++..... ..++|+++++.++|.+-.++ ++ +|+..+.++|++|||+|+
T Consensus 324 ~~L~g~~i~~~~~PD~~~~----l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~ 385 (450)
T 3nvs_A 324 GELNAVDLDFNHIPDAAMT----IATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVE 385 (450)
T ss_dssp CCCBCCEEECTTCTTTHHH----HHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCcCcEEeecCCCcCHHHH----HHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEE
Confidence 6565544433222222211 13344466777778776655 44 789999999999999986
No 16
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=99.47 E-value=4.9e-13 Score=116.44 Aligned_cols=139 Identities=24% Similarity=0.418 Sum_probs=99.2
Q ss_pred ccEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCe-EEEeeCCCCChHHHHHHHHHHHcCCeEEEee--eC---CEE
Q 047789 31 ETLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNS-CLLHNVPTGLSDTKTMLSILRLLGAKIEFNE--RN---KEI 103 (171)
Q Consensus 31 ~~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~-~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~--~~---~~~ 103 (171)
+.+.|+|.+++.| ++.+|+|.|.+..+++||++++|. ++|+|+..++.... +++.|++||++|+++. .+ +.+
T Consensus 212 ~~i~I~g~~~l~g~~~~v~~D~~~A~~~~~Aa~~~~g~~v~i~~~~~~~~~~~-~~~~L~~mGa~i~~~~~~~~~~~~~i 290 (427)
T 1rf6_A 212 KKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTG-IIDVIRAMGGKLEITEIDPVAKSATL 290 (427)
T ss_dssp TEEEEEECCCCBCCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCH-HHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred CEEEEcCCcccCCCeEEcCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCChhH-HHHHHHHcCCcEEEccccCCCCcceE
Confidence 3578888777777 899999999999999999999987 99999863122222 9999999999998421 13 568
Q ss_pred EEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCC--CC-CChHHHHHHHHhCCCeEEC
Q 047789 104 LVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI--GE-RPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 104 ~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l--~~-Rpi~~ll~~L~~lGa~v~~ 171 (171)
+|.+..+++..++...++.... +.-...+++.++++.+.|.|-.++ ++ +|+..+.++|++||++|++
T Consensus 291 ~v~~~~l~~~~i~~~~~p~~~D-~~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~ 360 (427)
T 1rf6_A 291 IVESSDLKGTEICGALIPRLID-ELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITP 360 (427)
T ss_dssp EEECCCCBCCEECTTSGGGTGG-GHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEE
T ss_pred EEeCCCCCcEEeccccCCChHH-HHHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEE
Confidence 8876555544444322221100 112223444478889999986666 45 9999999999999999863
No 17
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=99.41 E-value=2.5e-12 Score=111.58 Aligned_cols=129 Identities=21% Similarity=0.178 Sum_probs=95.5
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeCCEEEEEc--C
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEILVNT--D 108 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~--~ 108 (171)
.+.|+|.+++.| ++.+|+|.|.+.++++||++++|+++|+|+.. +....+++.|++||++|+ ..++.++|.+ .
T Consensus 212 ~i~I~g~~~l~g~~~~v~~D~s~A~~~~~aa~~~~g~v~i~~~~~--~~~~~~~~~L~~mGa~i~--~~~~~i~v~~~~~ 287 (419)
T 1ejd_A 212 RITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQP--DTLDAVLAKLREAGADIE--TGEDWISLDMHGK 287 (419)
T ss_dssp EEEEECCSCBCCEEEECCBCHHHHHHHHHHHHTTTCEEEEESCCG--GGCHHHHHHHHHTTCEEE--ECSSEEEEECTTC
T ss_pred EEEEeCCCcccccEEEeeCCHHHHHHHHHHHHhcCCeEEEeCcCc--ccHHHHHHHHHHCCCEEE--EcCCEEEEEecCC
Confidence 478888777777 89999999999999999999999999999985 556689999999999999 6678899987 3
Q ss_pred CCCCCCCChh----hhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEEC
Q 047789 109 GVGRAEPCLG----EMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVEI 171 (171)
Q Consensus 109 ~~~~~~~~~~----~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~~ 171 (171)
.+++..++.. +.+..- ....+++.++++.+.+.+ .+.+.+++ +.++|++||++|++
T Consensus 288 ~l~~~~i~~~~~p~~~~D~~----p~la~la~~a~g~s~i~~--~i~~~R~~-~~~eL~~lG~~i~~ 347 (419)
T 1ejd_A 288 RPKAVTVRTAPHPAFPTDMQ----AQFTLLNLVAEGTGVITE--TIFENRFM-HVPELIRMGAHAEI 347 (419)
T ss_dssp CCBCCCEECCSTTSCCGGGH----HHHHHHHHTSBSEEEEEC--CSCSSCCT-HHHHHHHTTCEEEE
T ss_pred CccceEEeCCCCCCCcHHHH----HHHHHHHHhCCCcEEEEc--cchHhHHH-HHHHHHHCCCEEEE
Confidence 4444333321 111221 112344447788888885 24445555 48999999999963
No 18
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=99.40 E-value=4.6e-12 Score=111.25 Aligned_cols=126 Identities=16% Similarity=0.227 Sum_probs=94.8
Q ss_pred EEEeCCCccce-EEEccC-CHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEEcCC
Q 047789 33 LTITGPTQLSG-HVPISG-SKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-KEILVNTDG 109 (171)
Q Consensus 33 ~~V~~~~~l~g-~i~vpg-sKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-~~~~I~~~~ 109 (171)
+.+.+.+ +.| ++.+|. |...++++|+||++++|+++|+|++. .+|+..++++|++||++|+ .++ +.++|+|..
T Consensus 169 ~~i~~~~-l~g~~~~l~~~S~q~~s~lLlAa~la~G~t~I~~~~~-~p~i~~t~~~L~~~Ga~I~--~~~~~~i~I~g~~ 244 (454)
T 3r38_A 169 IEATAEK-LVGAKVYLDFPSVGATQNIMMAATLAEGTTVIENVAR-EPEIVDLANFLNQMGARVI--GAGTEVIRIEGVK 244 (454)
T ss_dssp EEEECSS-CBCCEEECSSCCHHHHHHHHHHHTTSBSEEEEESCCC-CHHHHHHHHHHHHTTCCEE--CTTSSEEEEECCS
T ss_pred EEEEEcC-ccCcEEEecCCCHHHHHHHHHHHhcCCCcEEEEcCCC-CcHHHHHHHHHHHCCCCEE--ECCCeEEEEecCc
Confidence 4455433 555 777774 45677899999999999999999998 8999999999999999999 655 589999853
Q ss_pred -CCCCCCChhh-hchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChHHHHHHHHhCCCeEE
Q 047789 110 -VGRAEPCLGE-MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 110 -~~~~~~~~~~-~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~~ll~~L~~lGa~v~ 170 (171)
+.+. ++.+ .+.+.++++++.++++ .+.+++.| +..+|++.+++.|++||++|+
T Consensus 245 ~l~~~--~~~v~~D~s~A~~~l~aaal~---gg~v~i~g---~~~~~~~~i~~~L~~mGa~i~ 299 (454)
T 3r38_A 245 ELTAT--EHSIIPDRIEAGTFMIAAAIT---GGNVLIED---AVPEHISSLIAKLEEMGVQII 299 (454)
T ss_dssp CEECC--EEECCBCHHHHHHHHHHHHHT---TCEEEEES---CCGGGGHHHHHHHHHTTCEEE
T ss_pred ccccc--ccccCCChhHHHHHHHHHHHc---CCcEEEcC---CCchHHHHHHHHHHHCCCEEE
Confidence 3321 1222 2445666666655554 34677776 467899999999999999986
No 19
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=99.34 E-value=8.1e-12 Score=109.13 Aligned_cols=137 Identities=21% Similarity=0.297 Sum_probs=97.4
Q ss_pred cEEEeCCCccce-EEEccCCHHHHHHHHHHHhhCCCe-EEEeeCCCCChHHHHHHHHHHHcCCeEEEee---eC----CE
Q 047789 32 TLTITGPTQLSG-HVPISGSKNSSLCLLAATLLCSNS-CLLHNVPTGLSDTKTMLSILRLLGAKIEFNE---RN----KE 102 (171)
Q Consensus 32 ~~~V~~~~~l~g-~i~vpgsKS~a~r~l~aAaLa~g~-~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~---~~----~~ 102 (171)
.+.|+|.+++.| ++.+|+|.|.+..+++||++++|. ++|+|+..+...- .+++.|++|||+|++.. .+ +.
T Consensus 220 ~~~I~g~~~l~~~~~~v~~D~s~a~~~l~aa~~~~g~~v~i~~~~~~~~~~-~~~~~L~~mGa~i~~~~~~~~~g~~~~~ 298 (445)
T 2pqc_A 220 TIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRT-GLILTLQEMGADIEVINPRLAGGEDVAD 298 (445)
T ss_dssp EEEEETTCCCBCCEEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGGC-HHHHHHHHHTCEEEEEEEEEETTEEEEE
T ss_pred EEEEeCCccccCceeEcCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcc-hHHHHHHHcCCeEEEccccccCCCccCc
Confidence 477888766776 799999999999999999999887 9999987412222 29999999999998410 12 45
Q ss_pred EEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCC--CCC-CChHHHHHHHHhCCCeEE
Q 047789 103 ILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCD--IGE-RPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 103 ~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~--l~~-Rpi~~ll~~L~~lGa~v~ 170 (171)
++|.+..+++..++...++..-... -...+++.++++.+++.+-.+ +++ +++..++++|++||++|+
T Consensus 299 i~v~~~~l~~~~i~~~~~p~~~D~~-p~l~~~a~~a~G~s~i~~~~~lr~kEsdRi~~~~~eL~~~Ga~i~ 368 (445)
T 2pqc_A 299 LRVRSSTLKGVTVPEDRAPSMIDEY-PILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCD 368 (445)
T ss_dssp EEEECCCCBCCEECGGGGGGTGGGH-HHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCCceEeccccCCchHHHH-HHHHHHHHhCCCcEEEEcccccccccchHHHHHHHHHHHCCCEEE
Confidence 7887655554444432222110111 122344447788899998765 455 999999999999999996
No 20
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=99.31 E-value=7e-12 Score=110.83 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=89.1
Q ss_pred cce-EEEcc-CCH-----------HHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-CEEEEE
Q 047789 41 LSG-HVPIS-GSK-----------NSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-KEILVN 106 (171)
Q Consensus 41 l~g-~i~vp-gsK-----------S~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-~~~~I~ 106 (171)
+.| +|.+| .+- +.++++|+||+|++|+++|+|+.. ++|+..++++|++||++|+ .++ +.++|+
T Consensus 170 l~g~~i~l~~~sSSSQfiS~lq~v~~t~~lLlaa~la~G~t~I~~~~~-~pdi~~Tl~~L~~~Ga~I~--~~~~~~i~I~ 246 (479)
T 4fqd_A 170 LTPCTIDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYL-KPDVTDMVTVLRDLGADIE--FAGPETWVIH 246 (479)
T ss_dssp CCCCEEEGGGGCSBTTTTBCTTHHHHHHHHHHHHHTSEEEEEEESCCC-SHHHHHHHHHHHHHTCCEE--EEETTEEEEE
T ss_pred ccccEEEeccccchHHhhccchhHHHHHHHHHHHHhCCCcEEEecCCC-ChHHHHHHHHHHHCCCeEE--EcCCCEEEEe
Confidence 444 89994 332 456799999999999999999998 8999999999999999999 544 699999
Q ss_pred cCC----CCCCCCChhh-hchhhHHHHhHHHHhhhcCCcEEEecCCCCCC--CCChHHHHHHHHhCCCeEE
Q 047789 107 TDG----VGRAEPCLGE-MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG--ERPVDLYVRGLRALGAAVE 170 (171)
Q Consensus 107 ~~~----~~~~~~~~~~-~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~--~Rpi~~ll~~L~~lGa~v~ 170 (171)
|.+ +.+. ++.+ .+.+-++++++.+++. ..+.+++.|.. +. +||+..+++.|++||++|+
T Consensus 247 g~g~~~~l~~~--~~~V~~D~s~Ag~fl~aaal~--~gg~v~l~g~~-~~s~~~~~~~i~~~L~~mGa~i~ 312 (479)
T 4fqd_A 247 GRGPESLHRPV--DVTLIPDLIEVVTWICAGVLL--ADEPLRITGPG-IDRAVHALAPEFDLLDRMGVRVD 312 (479)
T ss_dssp EECGGGCCCCE--EEECCBCHHHHHHHHHHHHHH--BSSCEEEECTT-HHHHHHHTHHHHHHHHHHTCCEE
T ss_pred CCCCCCccCCC--ceEeCCChHhHHHHHHHHHHc--CCCeEEEeCCC-CccccCchHHHHHHHHHCCCEEE
Confidence 852 3221 1112 2344555544444432 23567888875 33 5789999999999999986
No 21
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=94.89 E-value=0.13 Score=43.69 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhCCCeEEEeeCCCC-----C-hHHHHHHHHHHHc-CCeEEEeeeCC-EEEEEcCCCCCCCCChhhhchh
Q 047789 52 NSSLCLLAATLLCSNSCLLHNVPTG-----L-SDTKTMLSILRLL-GAKIEFNERNK-EILVNTDGVGRAEPCLGEMRKI 123 (171)
Q Consensus 52 S~a~r~l~aAaLa~g~~~I~n~~~~-----s-~Dv~~~l~~L~~l-Ga~v~~~~~~~-~~~I~~~~~~~~~~~~~~~~~~ 123 (171)
..--..+++|+|++.+++|.|.-.+ . +.=...++++.++ |++|+.+..+. +++..|....+.....+ ++..
T Consensus 37 Q~lR~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~PG~i~gg~~~~d-~~ta 115 (358)
T 3tut_A 37 QILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPGTVRGGDYRFA-IGSA 115 (358)
T ss_dssp HHHHHHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEECCCCCCCEEEEE-CSSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEECCCccCceEEEE-CCCc
Confidence 3444678888898999999998421 1 2224678888887 99998544453 68888765543332222 3333
Q ss_pred hHH---HHhHHHHhhhcCCc--EEEecCCCCCCCC-ChHHH----HHHHHhCCCeEE
Q 047789 124 RGG---FFVIGPLLARFGEA--VVGLPGGCDIGER-PVDLY----VRGLRALGAAVE 170 (171)
Q Consensus 124 ~~s---~~~l~~lla~~~~~--~~~i~G~~~l~~R-pi~~l----l~~L~~lGa~v~ 170 (171)
++. +..+.|++. |++. .+++.|+-..... |++-+ +-.|++||+.++
T Consensus 116 gSi~l~lq~lLp~~l-Fa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~ 171 (358)
T 3tut_A 116 GSCTLVLQTVLPALW-FADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQ 171 (358)
T ss_dssp CBHHHHHHHHHHHHT-TSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEE
T ss_pred ccHHHHHHHHHHHHH-hCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 332 334445544 5444 6677887666544 34332 335789998764
No 22
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=94.15 E-value=0.093 Score=44.69 Aligned_cols=112 Identities=10% Similarity=0.137 Sum_probs=68.1
Q ss_pred HHHHHHhhCCCeEEEeeCCCC-----ChHH-HHHHHHHHHc-CCeE-EEeeeCCEEEEEcCCCCCCCCChhhhchhhHHH
Q 047789 56 CLLAATLLCSNSCLLHNVPTG-----LSDT-KTMLSILRLL-GAKI-EFNERNKEILVNTDGVGRAEPCLGEMRKIRGGF 127 (171)
Q Consensus 56 r~l~aAaLa~g~~~I~n~~~~-----s~Dv-~~~l~~L~~l-Ga~v-~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~ 127 (171)
..+++|+|++.+++|+|.-.+ ..+= ...++++.++ ++++ +++..+.+++..|....+.....+ ++..|+..
T Consensus 19 ~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg~i~gG~~~~d-~~tagSi~ 97 (365)
T 3pqv_A 19 LRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQ-CPNSKPVG 97 (365)
T ss_dssp HHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECCEECCEEEEEE-CCTTSCHH
T ss_pred HHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECCcccCCeEEEE-CCCCcchH
Confidence 467788888999999998431 1111 4688999998 4554 432345678877754433222222 44556566
Q ss_pred HhHHHHhhh--cCC--cEEEecCCCCCCCC-ChHHH----HHHHHhCCCe
Q 047789 128 FVIGPLLAR--FGE--AVVGLPGGCDIGER-PVDLY----VRGLRALGAA 168 (171)
Q Consensus 128 ~~l~~lla~--~~~--~~~~i~G~~~l~~R-pi~~l----l~~L~~lGa~ 168 (171)
|++-|+|.. |++ ..+++.|+-+-.-. |++-+ +-.|++||++
T Consensus 98 l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~ 147 (365)
T 3pqv_A 98 YFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVR 147 (365)
T ss_dssp HHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 666666654 333 46778887666544 44332 3358899987
No 23
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=75.68 E-value=2.9 Score=34.93 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChH
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 156 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~ 156 (171)
.+++..+.+++++.|..+++......+-+.|+++.+... ..-+ .++.+++|++| .++..+|+-.+..+-
T Consensus 55 ~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTGGdg~~t----~niS----t~~a~v~Aa~G-~~V~khG~r~~ss~~-- 123 (346)
T 4hkm_A 55 IGEIAGAATVMREFSRRVEVTDRRHMVDIVGTGGDGSHT----FNIS----TCAMFVAAAGG-AKVAKHGNRSVSSKS-- 123 (346)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC------C----CCHH----HHHHHHHHHTT-CEEEEEC----------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeecCCCCCCccc----cCcH----HHHHHHHHhcC-CCeeecCCCCCCCCc--
Confidence 478888999999999888731223456677775543210 0011 13457777776 588899987765432
Q ss_pred HHHHHHHhCCCeEE
Q 047789 157 LYVRGLRALGAAVE 170 (171)
Q Consensus 157 ~ll~~L~~lGa~v~ 170 (171)
--.|.|+.+|+++.
T Consensus 124 GsaD~LeaLG~~~~ 137 (346)
T 4hkm_A 124 GSADALEALGAVIE 137 (346)
T ss_dssp -CHHHHHTTTCCCC
T ss_pred CHHHHHHHcCCCcc
Confidence 13477888888764
No 24
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=69.77 E-value=11 Score=31.23 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEeee-CCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNER-NKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~-~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.+..+. .+ +..+-+.|+++.+... ..+.+ .+.+++|++| .++..+|+-.+.++-=
T Consensus 49 ~~Eiag~~~am~~~~~~~~--~~~~~~vD~~gTGGdg~~t-fNiSt-------~~a~v~Aa~G-v~V~kHGnr~~ss~~G 117 (329)
T 2elc_A 49 PHEIAAMARAMREAARPLR--VHRRPLLDIVGTGGDGKGL-MNLST-------LAALVAAAGG-VAVAKHGNRAASSRAG 117 (329)
T ss_dssp HHHHHHHHHHHHHHSCCCC--CCCSSEEEEEECCCCSSCC-CCCHH-------HHHHHHHHTT-CEEEEEECCCTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCCeeEEcCCCCCCCCc-cccHH-------HHHHHHHhCC-CCEEEeCCCCCCCccc
Confidence 4788889999999998887 43 3456677776543311 11111 2246777776 5888999877765332
Q ss_pred HHHHHHHHhCCCeE
Q 047789 156 DLYVRGLRALGAAV 169 (171)
Q Consensus 156 ~~ll~~L~~lGa~v 169 (171)
-.|.|+.+|+++
T Consensus 118 --saDvLeaLG~~~ 129 (329)
T 2elc_A 118 --SADLLEALGVDL 129 (329)
T ss_dssp --HHHHHHHTTCCT
T ss_pred --HHHHHHhCCCCC
Confidence 468888889875
No 25
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=66.92 E-value=10 Score=32.89 Aligned_cols=77 Identities=14% Similarity=0.325 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeC-----CEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERN-----KEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIG 151 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~ 151 (171)
.+++..+.+++++.|..+.| .. ..+-+.|+++.+.. .| ..+.+++|++| ..+..+|+-.+.
T Consensus 53 ~eEiag~~~Am~~~~~~~~~--~~~~~~~~~vD~~gTGGdG~~----------iS-t~~A~vvAa~G-v~VaKHGnR~~s 118 (440)
T 2tpt_A 53 MPERVSLTMAMRDSGTVLDW--KSLHLNGPIVDKHSTGGVGDV----------TS-LMLGPMVAACG-GYIPMISGRGLG 118 (440)
T ss_dssp HHHHHHHHHHHHHTSBCCCC--TTTTCSSCBEEEEECCCSSCC----------HH-HHHHHHHHHTT-CBEEEEECCCCT
T ss_pred HHHHHHHHHHHHHhCCcCCC--cccccCCCeeeeCCCCCCCcc----------HH-HHHHHHHHhCC-CcEEEECCCCCC
Confidence 37888899999999998874 32 35667777664332 12 24557888776 578888887675
Q ss_pred CCChHHHHHHHHhC-CCeE
Q 047789 152 ERPVDLYVRGLRAL-GAAV 169 (171)
Q Consensus 152 ~Rpi~~ll~~L~~l-Ga~v 169 (171)
+.-= -.+.|+.+ |+++
T Consensus 119 s~~G--saDvLEaL~Gv~~ 135 (440)
T 2tpt_A 119 HTGG--TLDKLESIPGFDI 135 (440)
T ss_dssp TSCC--HHHHHTTSTTCCS
T ss_pred Cccc--HHHHHHhCcCCCC
Confidence 4322 46778887 7765
No 26
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=61.74 E-value=13 Score=31.40 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEee-eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE-RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~-~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.+..+.++. .+..+.+.|+++.+... ..+ + .++.+++|++| .++..+|+-.+..+-=
T Consensus 75 ~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gTGGdg~~T-~ni---S----t~~A~v~Aa~G-v~VaKHGnR~~ss~~G 145 (377)
T 3r88_A 75 ADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNT-VNL---S----TMAAIVVAAAG-VPVVKHGNRAASSLSG 145 (377)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCCCSCCB-CCH---H----HHHHHHHHHTT-CCEEEEECCCSSSSCC
T ss_pred HHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCCCCCCcCc-ccc---H----HHHHHHHHhcC-CeEEeECCCCCCCccc
Confidence 3778889999999998876311 23567777776543321 011 1 13347777766 5888999877765332
Q ss_pred HHHHHHHHhCCCeEE
Q 047789 156 DLYVRGLRALGAAVE 170 (171)
Q Consensus 156 ~~ll~~L~~lGa~v~ 170 (171)
-.+.|+.+|+++.
T Consensus 146 --saDvLEaLGv~~~ 158 (377)
T 3r88_A 146 --GADTLEALGVRID 158 (377)
T ss_dssp --HHHHHHHTTCCCC
T ss_pred --HHHHHHHcCCCcc
Confidence 3477888898764
No 27
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=61.48 E-value=12 Score=31.51 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHcCCeE--------EEeee---CCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEec
Q 047789 77 LSDTKTMLSILRLLGAKI--------EFNER---NKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLP 145 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v--------~~~~~---~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~ 145 (171)
.+++..+.+++++.+..+ . .+ ...+-+.|+++.+... ..+ + ..+.+++|++| .++..+
T Consensus 76 ~eEiag~~~am~~~~~~~~~~~~~~~~--~~~~~~~~vD~~gTGGdg~~t-fNi---S----t~~A~v~Aa~G-v~VaKH 144 (374)
T 1vqu_A 76 ADELTGMAEVLQSQSKMGTGENYSQLP--ITNSPFSIIDTCGTGGDGSST-FNI---S----TAVAFVAAAYG-VPVAKH 144 (374)
T ss_dssp HHHHHHHHHHHHTTCCC-------------CCSSSCCEEEEECC---CCB-CCH---H----HHHHHHHHHTT-CCEEEE
T ss_pred HHHHHHHHHHHHHhCCccccccccccC--ccccCCCeeEEeCCCCCCCCc-cch---H----HHHHHHHHhCC-CCEEEE
Confidence 478888999999999888 5 32 2345566766543210 111 1 13346777776 578889
Q ss_pred CCCCCCCCChHHHHHHHHhCCCeE
Q 047789 146 GGCDIGERPVDLYVRGLRALGAAV 169 (171)
Q Consensus 146 G~~~l~~Rpi~~ll~~L~~lGa~v 169 (171)
|+-.+..+-= -.|.|+++|+++
T Consensus 145 GnR~~ss~~G--saDvLEaLGv~~ 166 (374)
T 1vqu_A 145 GNRSASSLTG--SADVLEALGVNL 166 (374)
T ss_dssp EECC--CTTC--HHHHHHHTTCCT
T ss_pred CCCCCCCCCC--HHHHHHhCCCCC
Confidence 8877754322 467788888765
No 28
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=61.08 E-value=15 Score=32.22 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEee--eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE--RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERP 154 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~--~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rp 154 (171)
.+++..+.+++++.|..+.|+. ++..+-+.++++.+.. .| ..+.+++|++| ..+..+|+-.+.+.-
T Consensus 79 ~eEiag~a~AMr~~~~~v~~~~~~~~~~vD~~gTGGdG~~----------iS-t~~A~vvAa~G-v~VaKHGnRa~ss~~ 146 (474)
T 1uou_A 79 LEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDK----------VS-LVLAPALAACG-CKVPMISGRGLGHTG 146 (474)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCGGGGGGBEEEEESCCTTCC----------HH-HHHHHHHHTTT-CBEEEECCCCBTTBC
T ss_pred HHHHHHHHHHHHHhCCcCCcccccCCCeeEeCCCCCCCce----------eH-HHHHHHHHhCC-CCEEEECCCCCCCCC
Confidence 3788889999999999887311 1135677777654332 12 24557888776 578889987775432
Q ss_pred hHHHHHHHHhC-CCeEE
Q 047789 155 VDLYVRGLRAL-GAAVE 170 (171)
Q Consensus 155 i~~ll~~L~~l-Ga~v~ 170 (171)
= -.|.|+.+ |+++.
T Consensus 147 G--SaDvLEaLpGv~i~ 161 (474)
T 1uou_A 147 G--TLDKLESIPGFNVI 161 (474)
T ss_dssp C--HHHHHTTSTTCCCC
T ss_pred C--HHHHHHhCCCCCCC
Confidence 2 34788888 87653
No 29
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=59.12 E-value=17 Score=31.35 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEee-eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE-RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~-~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.|..+.|+. .+..+-+.++++.+.. .| ..+.+++|++| ..+..+|+-.+.+.-=
T Consensus 52 ~eEiag~a~AM~~~~~~v~~~~~~~~~vD~~gTGGdG~~----------iS-t~~A~vvAa~G-v~VaKHGnRa~ss~~G 119 (433)
T 1brw_A 52 EEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDT----------TT-LVLGPLVASVG-VPVAKMSGRGLGHTGG 119 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCCCTTSCSCCEEEEECCCSSCC----------HH-HHHHHHHHTTT-CCEEEEECCCBTTBCC
T ss_pred HHHHHHHHHHHHHhCCcCCcccccCCceeeCCCCCCCcc----------hH-HHHHHHHHhCC-CcEEEECCCCCCCCCC
Confidence 4788889999999998887311 1235667777654332 12 24557888776 5788888877754322
Q ss_pred HHHHHHHHhC-CCeEE
Q 047789 156 DLYVRGLRAL-GAAVE 170 (171)
Q Consensus 156 ~~ll~~L~~l-Ga~v~ 170 (171)
-.|.|+.+ |+++.
T Consensus 120 --saDvLEaL~Gv~i~ 133 (433)
T 1brw_A 120 --TIDKLESVPGFHVE 133 (433)
T ss_dssp --HHHHHTTSTTCCCC
T ss_pred --HHHHHHHCcCceec
Confidence 34888888 88763
No 30
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=57.59 E-value=43 Score=28.13 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCeEEEeeCCCCChHHHHHHHHHHHc-CCeEEEeeeCCEEEEE
Q 047789 50 SKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL-GAKIEFNERNKEILVN 106 (171)
Q Consensus 50 sKS~a~r~l~aAaLa~g~~~I~n~~~~s~Dv~~~l~~L~~l-Ga~v~~~~~~~~~~I~ 106 (171)
|...+-.+++.-+|+++ +.++--+. +..+...+..+++| |+++++...++.+.|.
T Consensus 301 D~~l~Dqlil~mALa~~-s~i~~~~l-T~Ht~T~i~vie~fl~v~f~i~~~~~~~~v~ 356 (358)
T 3tut_A 301 GEYLADQLVLPMALAGA-GEFTVAHP-SSNLLTNIAVVERFLPVRFSLIETDGVTRVS 356 (358)
T ss_dssp CHHHHHHHHHHHHHHTC-CEEEESSC-CHHHHHHHHHHHHHSSCCEEEEEETTEEEEE
T ss_pred chhhHHHHHHHHHhCCC-CeEEEcCC-CHHHHHHHHHHHHhcCCEEEEEecCCceEEE
Confidence 55666677887888765 33554455 68999999999997 9998864444555553
No 31
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=55.51 E-value=12 Score=31.30 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHcCCeEEEeee-CCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCC-CC
Q 047789 77 LSDTKTMLSILRLLGAKIEFNER-NKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGE-RP 154 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~-~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~-Rp 154 (171)
.+++..+.+++++.+..+. .. ...+-+.|+++.+... ..+.+ .+.+++|++| .++..+|+-.+.+ +-
T Consensus 62 ~eEiag~~~am~~~~~~~~--~~~~~~vD~~gTGGdg~~t-fNiSt-------~~A~v~Aa~G-v~VakHGnr~~ss~~~ 130 (345)
T 1khd_A 62 PEEIAGAASALLADAQPFP--RPDYDFADIVGTGGDGTNS-INIST-------ASAFVAASCG-AKVAKHGNRSVCQPLA 130 (345)
T ss_dssp HHHHHHHHHHHHHTSCCCC--CCSSCCEEEEECCCCSSCB-CCCHH-------HHHHHHHHHT-CCEEEEECC-------
T ss_pred HHHHHHHHHHHHHhCCcCC--CCCCCeeeecCCCCCCCCc-cchHH-------HHHHHHHhCC-CcEEEeCCCCCCCCcc
Confidence 4788889999999998876 33 2455577776654321 11112 3346777776 4788888866654 22
Q ss_pred hHHHHHHHHhCCCeE
Q 047789 155 VDLYVRGLRALGAAV 169 (171)
Q Consensus 155 i~~ll~~L~~lGa~v 169 (171)
= -.|.|+.+|+++
T Consensus 131 G--saDvLeaLGv~~ 143 (345)
T 1khd_A 131 G--SCDLLQAFGIRL 143 (345)
T ss_dssp ----CHHHHHTTCCT
T ss_pred c--HHHHHHhCCCCC
Confidence 1 367888888765
No 32
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=52.57 E-value=24 Score=30.49 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHcCCeEEEee-eCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCCh
Q 047789 77 LSDTKTMLSILRLLGAKIEFNE-RNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~-~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi 155 (171)
.+++..+.+++++.|..++|+. .+..+-+.++++.+.. +| ..+.+++|++| ..+..+|+-.+..+-=
T Consensus 55 ~eEiag~~~Am~~~~~~~~~~~~~~~~vD~~gTGGdG~~----------tS-t~~A~vvAa~G-v~VaKHGnRa~ss~~G 122 (436)
T 3h5q_A 55 DDERVALTMAMVNSGDMIDLSDIKGVKVDKHSTGGVGDT----------TT-LVLAPLVAAVD-VPVAKMSGRGLGHTGG 122 (436)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTSCSCCEEEEECCCTTCC----------HH-HHHHHHHHHTT-CCEEEECCCCSSSSCC
T ss_pred HHHHHHHHHHHHHhCCcCCccccCCCceeecCCCCCCCC----------hH-HHHHHHHHhCC-CCEEeECCCCCCCccc
Confidence 3788889999999998887311 1245666777654321 12 24567888776 5788899877764332
Q ss_pred HHHHHHHHhC-CCeEE
Q 047789 156 DLYVRGLRAL-GAAVE 170 (171)
Q Consensus 156 ~~ll~~L~~l-Ga~v~ 170 (171)
-.|.|+.+ |+++.
T Consensus 123 --saDvLEaLpGi~~~ 136 (436)
T 3h5q_A 123 --TIDKLEAIDGFHVE 136 (436)
T ss_dssp --HHHHHTTSTTCCCC
T ss_pred --HHHHHHhCcCCCCC
Confidence 35888888 87753
No 33
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=46.04 E-value=24 Score=30.36 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChH
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 156 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~ 156 (171)
.+++..+.+++++.|..+.|+...+.+-+.|+++.+.. .+ ..+.+++|++| .++..+|+-.+.+.-=
T Consensus 52 ~eEiag~a~aM~~~~~~l~~~~~~~~vD~~gTGGdG~n-------iS----t~~a~vvAa~G-v~VaKhGnR~~ss~~G- 118 (423)
T 2dsj_A 52 PEETLWLTETMARSGKVLDLSGLPHPVDKHSSGGVGDK-------VS----LVVGPILAASG-CTFAKMSGRGLAHTGG- 118 (423)
T ss_dssp HHHHHHHHHHHHTSSBCCCCTTSSSBEEEEEESSSCCS-------TH----HHHHHHHHTTT-CBEEEECCCCBTTBCC-
T ss_pred HHHHHHHHHHHHHhCCcCCccccCCceeEecCCCCCcc-------HH----HHHHHHHHhCC-CcEEEECCCCCCCCcc-
Confidence 47888899999999988874211125556677654321 11 24457888776 5788898867754222
Q ss_pred HHHHHHHhC-CCeEE
Q 047789 157 LYVRGLRAL-GAAVE 170 (171)
Q Consensus 157 ~ll~~L~~l-Ga~v~ 170 (171)
-.|.|+.+ |++++
T Consensus 119 -saDvLEaL~Gv~i~ 132 (423)
T 2dsj_A 119 -TIDKLESVPGWRGE 132 (423)
T ss_dssp -HHHHHTTSTTCCCC
T ss_pred -HHHHHHhCCCCCCC
Confidence 55777887 77653
No 34
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=42.96 E-value=54 Score=24.03 Aligned_cols=85 Identities=13% Similarity=-0.002 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCC-hhhhchhhHHHHhHHHHhhhcCCcEEEecCCCC----------C
Q 047789 82 TMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPC-LGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCD----------I 150 (171)
Q Consensus 82 ~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~-~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~----------l 150 (171)
.+-+.|+.-|++|+ .+++.+.|.-...-.+..+ .++-......+.-+..+|.......+.+.|... |
T Consensus 29 ~l~~~l~~~~v~v~--~~~~~~~i~~~~~i~F~~~sa~L~~~~~~~L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~L 106 (169)
T 3ldt_A 29 KIIRDLQKQDIQYV--EYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKL 106 (169)
T ss_dssp HHHHHHHHTTCEEE--EETTEEEEEEETTTCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHH
T ss_pred HHHHHHhhCCcEEE--EeCCEEEEEecCcceeCCCCceeCHHHHHHHHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHH
Confidence 35566777799998 7777766653321123332 234344445555555666655444566665332 2
Q ss_pred CCCChHHHHHHHHhCCCe
Q 047789 151 GERPVDLYVRGLRALGAA 168 (171)
Q Consensus 151 ~~Rpi~~ll~~L~~lGa~ 168 (171)
..++-+.+.+.|.+.|+.
T Consensus 107 S~~RA~aV~~~L~~~Gv~ 124 (169)
T 3ldt_A 107 SQAQAETMMTFLWANGIA 124 (169)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 347788899999988864
No 35
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=41.07 E-value=33 Score=20.74 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHcC---CeEEEeeeCCEEEEEcC
Q 047789 82 TMLSILRLLG---AKIEFNERNKEILVNTD 108 (171)
Q Consensus 82 ~~l~~L~~lG---a~v~~~~~~~~~~I~~~ 108 (171)
.++.++.++| ..|+ +++++++|+|.
T Consensus 22 ilikvfaelgyndinvt--wdgdtvtvegq 49 (62)
T 2gjh_A 22 ILIKVFAELGYNDINVT--WDGDTVTVEGQ 49 (62)
T ss_dssp HHHHHHHHTTCCSCEEE--ECSSCEEEEEE
T ss_pred HHHHHHHHhCcccceeE--EcCCEEEEEeE
Confidence 4677888998 4567 78999999985
No 36
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=35.00 E-value=29 Score=28.84 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCChhhhchhhHHHHhHHHHhhhcCCcEEEecCCCCCCCCChH
Q 047789 77 LSDTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVD 156 (171)
Q Consensus 77 s~Dv~~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~l~~Rpi~ 156 (171)
.+++..+.+++++.+..+. .+ ..+-+.|+++.+... ..+.+ .+.+++|++ .++..+|+-.+.++-=
T Consensus 52 ~eEiag~~~am~~~~~~~~--~~-~~vD~~gTGGdg~~t-fNiSt-------~~A~v~Aa~--v~VaKHGnR~~ss~~G- 117 (345)
T 1o17_A 52 KNEIVGFARAMRELAIKID--VP-NAIDTAGTGGDGLGT-VNVST-------ASAILLSLV--NPVAKHGNRAVSGKSG- 117 (345)
T ss_dssp HHHHHHHHHHHHHHSCCCC--CT-TCEECCC----CCCB-CCHHH-------HHHHHHTTT--SCEEEEECCCSSSSCS-
T ss_pred HHHHHHHHHHHHHhCCCCC--CC-CceeeCCCCCCCCCc-cchHH-------HHHHHHHHc--CCEEEECCCCCCCccc-
Confidence 4788889999999998876 33 344455655432210 11111 224667754 6888999877765332
Q ss_pred HHHHHHHhCCCeEE
Q 047789 157 LYVRGLRALGAAVE 170 (171)
Q Consensus 157 ~ll~~L~~lGa~v~ 170 (171)
-.|.|+.+|+++.
T Consensus 118 -saDvLEaLGv~~~ 130 (345)
T 1o17_A 118 -SADVLEALGYNII 130 (345)
T ss_dssp -HHHHHHHHTBCCC
T ss_pred -HHHHHHhCCCCCC
Confidence 3677888888753
No 37
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=31.35 E-value=51 Score=19.79 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=25.3
Q ss_pred eEEEeeCCCCChH-----HHHHHHH-HHHcCCeEEEeeeCCEEEEEcC
Q 047789 67 SCLLHNVPTGLSD-----TKTMLSI-LRLLGAKIEFNERNKEILVNTD 108 (171)
Q Consensus 67 ~~~I~n~~~~s~D-----v~~~l~~-L~~lGa~v~~~~~~~~~~I~~~ 108 (171)
.+.|.|+.+ ..+ .++.++. +++||+.-. .+++.++|.|.
T Consensus 8 kTvi~Nf~~-Ia~~L~R~p~hv~ky~~~ELGt~g~--id~~rlii~G~ 52 (52)
T 1k8b_A 8 RTIIRNFRE-LAKAVNRDEEFFAKYLLKETGSAGN--LEGGRLILQRR 52 (52)
T ss_dssp EEEECCHHH-HHHHHHTCHHHHHHHHHHHHSSEEE--EETTEEEEECC
T ss_pred eEEEECHHH-HHHHHCCCHHHHHHHHHHHhCCCee--ecCCEEEEeCC
Confidence 566666643 322 2344444 779999988 45889998873
No 38
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=25.44 E-value=12 Score=20.22 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.9
Q ss_pred CCCccccccCCcCcc
Q 047789 2 QNPFNYSLFNSPQTQ 16 (171)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (171)
-||+-|+|+|+++.+
T Consensus 16 lNPiIY~~~~~~fr~ 30 (40)
T 2koe_A 16 VNPIIYALRSKDLRH 30 (40)
T ss_dssp SSTTTTBTTBHHHHH
T ss_pred HHHHHHHHccHHHHH
Confidence 389999999987654
No 39
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=24.95 E-value=2.2e+02 Score=22.97 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCeEEE
Q 047789 79 DTKTMLSILRLLGAKIEF 96 (171)
Q Consensus 79 Dv~~~l~~L~~lGa~v~~ 96 (171)
.+...++.|+++|++|.+
T Consensus 213 ~~~~~l~~Lr~~G~~ial 230 (340)
T 4hjf_A 213 RAAVILKTLRDAGAGLAL 230 (340)
T ss_dssp HHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCCCccc
Confidence 345678889999999874
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=23.10 E-value=60 Score=20.68 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=22.2
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHcCCeEE
Q 047789 66 NSCLLHNVPTGLSDTKTMLSILRLLGAKIE 95 (171)
Q Consensus 66 g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~ 95 (171)
..+.|.|+|. .-+-+.+.++++++|..|+
T Consensus 2 ~~i~v~nLp~-~~te~~l~~~F~~~G~~v~ 30 (91)
T 2lxi_A 2 NIVMLRMLPQ-AATEDDIRGQLQSHGVQAR 30 (91)
T ss_dssp CEEEEETCCS-SCCHHHHHHHHHHHTCCCS
T ss_pred CEEEEeCCCC-CCCHHHHHHHHHHhCCEeE
Confidence 4688999998 5343578899999997654
No 41
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.64 E-value=1.2e+02 Score=17.39 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=19.1
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHcCCeEE
Q 047789 65 SNSCLLHNVPTGLSDTKTMLSILRLLGAKIE 95 (171)
Q Consensus 65 ~g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~ 95 (171)
.+.++|.- +. ..+...+.+.++++|.+++
T Consensus 39 ~~~~~v~~-~~-~~~~~~i~~~i~~~Gy~~~ 67 (69)
T 4a4j_A 39 LEQAVVSY-HG-ETTPQILTDAVERAGYHAR 67 (69)
T ss_dssp TTEEEEEE-CT-TCCHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEE-CC-CCCHHHHHHHHHHcCCceE
Confidence 45566664 33 3455678888889987765
No 42
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=21.36 E-value=1.8e+02 Score=18.90 Aligned_cols=29 Identities=3% Similarity=-0.111 Sum_probs=24.2
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHcCCeEE
Q 047789 66 NSCLLHNVPTGLSDTKTMLSILRLLGAKIE 95 (171)
Q Consensus 66 g~~~I~n~~~~s~Dv~~~l~~L~~lGa~v~ 95 (171)
..++|-.-+. ......+.+.|++.|+..+
T Consensus 4 a~I~vYs~~~-Cp~C~~aK~~L~~~gi~y~ 32 (92)
T 2lqo_A 4 AALTIYTTSW-CGYCLRLKTALTANRIAYD 32 (92)
T ss_dssp SCEEEEECTT-CSSHHHHHHHHHHTTCCCE
T ss_pred CcEEEEcCCC-CHhHHHHHHHHHhcCCceE
Confidence 4577777777 8888999999999999876
No 43
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.33 E-value=55 Score=20.76 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHcCCe
Q 047789 78 SDTKTMLSILRLLGAK 93 (171)
Q Consensus 78 ~Dv~~~l~~L~~lGa~ 93 (171)
.|.+.+.++|+.+|++
T Consensus 2 rda~~i~~iLk~~G~~ 17 (68)
T 1taf_A 2 KDAQVIMSILKELNVQ 17 (68)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHCCCc
Confidence 5888999999999985
No 44
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=21.18 E-value=39 Score=24.16 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCeEEEeeeCCEEEEEcCCCCCCCCC-hhhhchhhHHHHhHHHHhhhcCCcEEEecCCCC----------C
Q 047789 82 TMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPC-LGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCD----------I 150 (171)
Q Consensus 82 ~~l~~L~~lGa~v~~~~~~~~~~I~~~~~~~~~~~-~~~~~~~~~s~~~l~~lla~~~~~~~~i~G~~~----------l 150 (171)
.+-+.|..-|+.|+ ..++.+.|.-...-.+..+ ..+-......+.-+..+|.......+.+.|... |
T Consensus 9 ~l~~~l~~~~~~v~--~~~~~~~i~~~~~i~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~~G~~~~N~~L 86 (149)
T 2k1s_A 9 KLRDKMRGTGVSVT--RSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRL 86 (149)
T ss_dssp HHHHHTTTTSCEEE--EETTEEEEEEEHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHH
T ss_pred HHHHHHhcCCcEEE--EcCCEEEEEccCcceeCCCCccCCHHHHHHHHHHHHHHHhCCCceEEEEEEcCCCCChHHHHHH
Confidence 34555666688887 7777776642110001111 122223333344445556545444677766432 2
Q ss_pred CCCChHHHHHHHHhCCCe
Q 047789 151 GERPVDLYVRGLRALGAA 168 (171)
Q Consensus 151 ~~Rpi~~ll~~L~~lGa~ 168 (171)
..++...+.+.|.+.|+.
T Consensus 87 S~~RA~aV~~~L~~~Gv~ 104 (149)
T 2k1s_A 87 SQQRADSVASALITQGVD 104 (149)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 346777888888877764
No 45
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=20.23 E-value=44 Score=23.67 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCCeE------EEeeCCCCChHHHHHHHHHHHcCCeEEEeeeC-----CEEEEEc
Q 047789 52 NSSLCLLAATLLCSNSC------LLHNVPTGLSDTKTMLSILRLLGAKIEFNERN-----KEILVNT 107 (171)
Q Consensus 52 S~a~r~l~aAaLa~g~~------~I~n~~~~s~Dv~~~l~~L~~lGa~v~~~~~~-----~~~~I~~ 107 (171)
+..-|+.+|-++..+.- ..+|.|. .-++.++.+|.++|++++..+++ +...|..
T Consensus 18 sF~RRLyla~lId~~~~nvp~L~~~TGmPR--RTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~d 82 (117)
T 3ke2_A 18 AFLRKLYLAHLMDDARHNLLSLGKLTGMPR--RTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRT 82 (117)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHCCCH--HHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCCCH--hHHHHHHHHhhhCCeEEEEEeccccCCCccEEEee
Confidence 44446777777755422 1234444 44577999999999999832233 4666654
Done!