RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047789
(171 letters)
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 178 bits (455), Expect = 9e-55
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 31 ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL 90
L I G +LSG V SG K+S + +AA S + N P + +T + I R
Sbjct: 14 PLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPD-IVETAVLGEIFRAA 72
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GA ++ ++ V+ RAE + +I G +++ L++R G A + GGC I
Sbjct: 73 GAHAHYDGADETFTVDASAWDRAELPADLVGRIHGSLYLLPALVSRNGVARLSASGGCPI 132
Query: 151 GE----RPVDLYVRGLRALGAAVEI 171
GE RP + + + G +
Sbjct: 133 GEGPRGRPDEHLLDVMGRFGVTTRL 157
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 175 bits (446), Expect = 4e-54
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL 90
+ + GPT+L G V ISG+KN++L +L A LL + NVP L D T + +L L
Sbjct: 2 DKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQL 60
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
G K+E R + ++ V ++ +R + +GPL+ARFG+ V LPGGC I
Sbjct: 61 GTKVE---RXGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAI 117
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RPVDL++ GL LGA +++
Sbjct: 118 GARPVDLHIFGLEKLGAEIKL 138
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 173 bits (442), Expect = 2e-53
Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL 90
+ I G L+G V ISG+KN++L ++ AT+L C + NVP L D + L +LR L
Sbjct: 11 DYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPD-LLDVRNTLLLLREL 69
Query: 91 GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
GA++EF N + +N + +R++R +GPLL RFG AVVGLPGGC I
Sbjct: 70 GAELEFL--NNTVFINPS-INSFITNQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGCSI 126
Query: 151 GERPVDLYVRGLRALGAAVEI 171
G RP+D +++ + GA VE+
Sbjct: 127 GARPIDQHLKFFKEAGADVEV 147
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 174 bits (443), Expect = 3e-53
Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
Query: 31 ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNS-CLLHNVPTGLSDTKTMLSILRL 89
E + + G QL+G V + G+KN+ L ++AATLL S +L NVP LSD T+ +L+
Sbjct: 26 EKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPN-LSDVFTINEVLKY 84
Query: 90 LGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCD 149
L A + F N E+ V+ G ++ +RK+R V+GPLLAR G A V LPGGC
Sbjct: 85 LNADVSFV--NDEVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCA 142
Query: 150 IGERPVDLYVRGLRALGAAVEI 171
IG RPVDL+++G A+GA V+I
Sbjct: 143 IGSRPVDLHLKGFEAMGAVVKI 164
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB:
1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A*
1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A*
2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Length = 450
Score = 67.3 bits (165), Expect = 6e-14
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 14 QTQKPQIRTQTTQIREA--ETLTITGPTQLSGHVPISGSKNSSLC----LLAATLLCSNS 67
+ + T+ + E+LT+ +SG V + GSK S+ LLAA L S +
Sbjct: 7 HSSGVDLGTENLYFQSNAMESLTLQPIELISGEVNLPGSK--SVSNRALLLAA--LASGT 62
Query: 68 CLLHNVPTGLS-DTKTMLSILRLLGAKIEFNERNKEILVNTDGVGRAEPC-------LGE 119
L N+ S D + ML+ L LG + V +G+G+A LG
Sbjct: 63 TRLTNLL--DSDDIRHMLNALTKLGVNYRLSADKTTCEV--EGLGQAFHTTQPLELFLGN 118
Query: 120 ----MRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPVDLYVRGLRALGAAVE 170
MR + L V L G + ERP+ V LR GA +E
Sbjct: 119 AGTAMR------PLA-AALCLGQGDYV-LTGEPRMKERPIGHLVDALRQAGAQIE 165
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 54.9 bits (133), Expect = 1e-09
Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 36 TGPTQLSGHVPISGSKNSSLC---LLAATLLCSNS---CLLHNVPTGLSDTKTMLSILRL 89
T PT + V + GSK S L+ A L + + DT+ ML L+
Sbjct: 8 TAPTPVRATVTVPGSK--SQTNRALVLAALAAAQGRGASTISGALRS-RDTELMLDALQT 64
Query: 90 LGAKIEFNERNKEILVNTDGVGRAEPC---LGE----MRKIRGGFFVIGPLLARFGEAVV 142
LG ++ + L + + G +R FV PL A V
Sbjct: 65 LGLRV---DGVGSELTVSGRIEPGPGARVDCGLAGTVLR------FVP-PLAALGSVPVT 114
Query: 143 GLPGGCDIGERPVDLYVRGLRALGAAVE 170
G RP+ + LR LG AV+
Sbjct: 115 -FDGDQQARGRPIAPLLDALRELGVAVD 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 8e-05
Identities = 33/226 (14%), Positives = 59/226 (26%), Gaps = 77/226 (34%)
Query: 9 LFNSPQTQKP----------QIRTQTTQIREAETLTI-----TGPTQLSGHV-------- 45
L+N Q ++R ++R A+ + I +G T ++ V
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 46 --P-----IS-GSKNS---------SLCLLAATLLCSNSCLLHNVPTGLSDTKTMLS--- 85
++ + NS L S S N+ + + L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 86 ----------ILR-----------LLGAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIR 124
+L L KI R K++ TD + A +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHS 295
Query: 125 GGFFVIGP-----LLARF-GEAVVGLPG-GCDIGERPVDLYVRGLR 163
P LL ++ LP R + + +R
Sbjct: 296 MTL---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural
genomics, protein structure initiative; 2.80A {Bacillus
halodurans}
Length = 455
Score = 39.9 bits (94), Expect = 2e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 28 REAETLTITGPTQLSG---HVP--ISGSKNSSLCLLAATLLCSNSCL-LHNVPTGLSDTK 81
++ T++I G L+G VP IS S+ L A + +S + L NV G++ T+
Sbjct: 213 KDGLTVSIEGGQMLTGQHVVVPGDIS----SAAFFLVAGAMVPHSRITLTNV--GINPTR 266
Query: 82 T-MLSILRLLGAKIEF-NERN 100
+L +L+ +GA + NER
Sbjct: 267 AGILEVLKQMGATLAMENERV 287
Score = 30.6 bits (70), Expect = 0.20
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 32 TLTITGPTQLSGHVPISGSKNSSL----CLLAATLLCSNSCLLHNVPTGLSDTKTMLSIL 87
I L G + + G K S+ + A L + + G +D + +S
Sbjct: 6 KTVIPHAKGLKGTIKVPGDK--SISHRAVMFGA--LAKGTTTVEGFLPG-ADCLSTISCF 60
Query: 88 RLLGAKIEFNERNKEILVNTDGVG 111
+ LG IE E + G G
Sbjct: 61 QKLGVSIEQAEERVTV----KGKG 80
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 39.5 bits (93), Expect = 2e-04
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 28 REAETLTITGPTQLSG---HVP--ISGSKNSSLCLLAATLLCSNSCL-LHNVPTGLSDTK 81
+ + +T+ GP +L+G VP IS S+ L A L+ NS L L NV G+++T+
Sbjct: 209 VDGKKITVQGPQKLTGQKVVVPGDIS----SAAFWLVAGLIAPNSRLVLQNV--GINETR 262
Query: 82 T-MLSILRLLGAKIEF-NERNKE 102
T ++ ++R +G K+E
Sbjct: 263 TGIIDVIRAMGGKLEITEIDPVA 285
Score = 26.4 bits (59), Expect = 5.4
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 39 TQLSGHVPISGSKNSSL----CLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKI 94
L G + + G K S+ + + L ++++ G D + + + R LG +I
Sbjct: 8 RHLHGIIRVPGDK--SISHRSIIFGS--LAEGETKVYDILRG-EDVLSTMQVFRDLGVEI 62
Query: 95 EFNERNKEILVNTDGVG 111
E + + GVG
Sbjct: 63 EDKDGVITV----QGVG 75
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
PDB: 3roi_A* 4egr_A* 3tr1_A
Length = 441
Score = 38.7 bits (91), Expect = 5e-04
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 28 REAETLTITGPTQLSG---HVP--ISGSKNSSLCLLAATLLCSNSCL-LHNVPTGLSDTK 81
++ +++ ++G +L +P IS S+ + A + S + L V G++ T+
Sbjct: 213 KDKQSICVSGGGKLKANDISIPGDIS----SAAFFIVAATITPGSAIRLCRV--GVNPTR 266
Query: 82 T-MLSILRLLGAKIEF-NERN 100
++++L+++GA IE +
Sbjct: 267 LGVINLLKMMGADIEVTHYTE 287
Score = 32.9 bits (76), Expect = 0.044
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 32 TLTITGPTQLSGHVPISGSKNSSL----CLLAATLLCSNSCLLHNVPTGLSDTKTMLSIL 87
LSG + + G K S+ LLAA + + G +D M+S L
Sbjct: 5 DYQTIPSQGLSGEICVPGDK--SISHRAVLLAA--IAEGQTQVDGFLMG-ADNLAMVSAL 59
Query: 88 RLLGAKIEFNERNKEILVNTDGVG 111
+ +GA I+ E ++V GVG
Sbjct: 60 QQMGASIQVIEDENILVVE--GVG 81
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 37.5 bits (88), Expect = 0.001
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 32 TLTITGPTQLSG---HVP--ISGSKNSSLCLLAATLLCSNSCL-LHNVPTGLSDTKT-ML 84
T+ + G +L+G VP S S+ L A LL S + + NV ++ T+T ++
Sbjct: 220 TIRLEGRGKLTGQVIDVPGDPS----STAFPLVAALLVPGSDVTILNV--LMNPTRTGLI 273
Query: 85 SILRLLGAKIEF-NERN 100
L+ +GA IE N R
Sbjct: 274 LTLQEMGADIEVINPRL 290
Score = 30.6 bits (70), Expect = 0.23
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 30 AETLTITGPTQLSGHVPISGSKNSSL----CLLAATLLCSNSCLLHNVPTGLSDTKTMLS 85
+ T + LSG V I G K S+ + L S + + G D
Sbjct: 2 SRPATARKSSGLSGTVRIPGDK--SISHRSFMFGG--LASGETRITGLLEG-EDVINTGK 56
Query: 86 ILRLLGAKIEFNERNKEILVNTDGVG 111
++ +GA+I I DGVG
Sbjct: 57 AMQAMGARIRKEGDTWII----DGVG 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.003
Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 80/204 (39%)
Query: 18 PQIR-TQTTQ-IREAETLTITGPTQL-------SGH-------VPISGSK-------NSS 54
P I Q + A+ L T P +L +GH V I+ + +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 55 LCL-------LAATLLCSNSCLLHNVPTGLSDTKT--------MLSILRLLGAKIE---- 95
+ + N+ L P+ L D+ MLSI L +++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSL---PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 96 -FNER---NKEI---LVNTDGVGRAEPCLGEMRKIRGGFFVI-GPL--LARFGEAV--VG 143
N K++ LVN + V+ GP L +
Sbjct: 355 KTNSHLPAGKQVEISLVNGA---KN--------------LVVSGPPQSLYGLNLTLRKAK 397
Query: 144 LPGGCDIG-----ERPVDLYVRGL 162
P G D ER + R L
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFL 421
Score = 33.5 bits (76), Expect = 0.035
Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 78/207 (37%)
Query: 25 TQIREAETLTITGPT--------QLS---------GHV--PISGSKNSSLC-LLAATL-- 62
+Q++E + PT + G+V + SK +L L
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 63 -----LCSN------SCLLHNVPTGLSDTKTMLSILR-----LLGAKIEFNERNKEIL-- 104
L N + LL T L TK +++ + AK F++++ L
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTK---ELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 105 -VNTD---------GVGRAEPCLGEMRKI----RGGFFVIGPLLARFGEAVVGL------ 144
V G G + E+R + ++G L+ E + L
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV---LVGDLIKFSAETLSELIRTTLD 204
Query: 145 -----PGGCDIGE-------RPVDLYV 159
G +I E P Y+
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYL 231
Score = 30.8 bits (69), Expect = 0.23
Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 52/94 (55%)
Query: 8 SLFNSPQTQKPQIRTQTTQIREAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNS 67
SL N + L ++GP Q SL L T
Sbjct: 369 SLVNGAK-----------------NLVVSGPPQ-------------SLYGLNLT------ 392
Query: 68 CLLHNV--PTGLSDTKTMLSILRLLGAKIEFNER 99
L P+GL D ++I F+ER
Sbjct: 393 --LRKAKAPSGL-DQ-----------SRIPFSER 412
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus,
phosphoprotein, UBL conjugation pathway, WD repeat,
nuclear protein; 1.60A {Saccharomyces cerevisiae}
Length = 253
Score = 28.9 bits (64), Expect = 0.86
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 9 LFNSPQTQKPQIRTQTTQIREAETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSC 68
FN+ + + ET+ + S ++ +L + +TL+ + S
Sbjct: 117 CFNNENWGVKLLESNQVYKSIFETI-------DTEFSQASAKQSQNLAIAVSTLIFNYSA 169
Query: 69 LLHNVPTGLSDTKTMLSILRLLGAKIEFNERNKEIL 104
L+ + L + + +E + +E
Sbjct: 170 LVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAA 205
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 27.3 bits (60), Expect = 3.6
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 1 MQNPFNYSLFNSPQTQKPQIRTQTT-----QIRE 29
+++ F + + K +R+ T + +
Sbjct: 183 LEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSD 216
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 26.5 bits (58), Expect = 5.2
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 1 MQNPFNYSLFNSPQTQKPQIRTQTT-----QIRE 29
+++ F + + K +R+ T + +
Sbjct: 183 LEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSD 216
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid,
ATP-binding, cytoplasm, nucleotide-binding, transferase,
lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A*
3a7a_A* 1x2g_A*
Length = 337
Score = 26.3 bits (58), Expect = 5.3
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 80 TKTMLSILRLLGAKIEFNERNKEILVNTDGVGR 112
T +L+ L LG E + RN +++V T R
Sbjct: 101 TSIVLNALNALGVSAEASGRN-DLVVKTVEGDR 132
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 26.4 bits (58), Expect = 5.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 65 SNSCLLHNVPTGLSDTKTML-SILRLLGAKIEFNERN-KEILVNTDGVGRAEPCLGEMRK 122
S+S +L N+ + L+ S+L+ L KI+ + RN +E L AEP M++
Sbjct: 338 SDSTVLRNIGSSLAYCLIAYKSVLKGLN-KIDIDRRNLEEELNQNWST-LAEPIQIVMKR 395
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate
binding protein, calcium, lactate, trap transporter,
transport protein; 1.40A {Thermus thermophilus} PDB:
2zzw_A 2zzx_A
Length = 361
Score = 26.2 bits (58), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 122 KIRGGFFVIGPLLARFGEAVVGLPGG 147
K+R +I + A G + V LPGG
Sbjct: 176 KLRVPGGMIAEVFAAAGASTVLLPGG 201
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 26.4 bits (59), Expect = 5.6
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 105 VNTDGVGRAEPCLGEMRKIRGGFFV-IG--------PLLARFGEAVVGLPGGCDIGERPV 155
+NT + + + EMR++R FV IG +LA G + G D+ PV
Sbjct: 1 MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQI----SGSDLAPNPV 56
Query: 156 DLYVRGLRALGAAVEI 171
+ L LGA +
Sbjct: 57 ---TQQLMNLGATIYF 69
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 26.5 bits (58), Expect = 6.4
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 1 MQNPFNYSLFNSPQTQKPQIRTQTT-----QIRE 29
+++ F + + K +R+ T + +
Sbjct: 183 LEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSD 216
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 26.1 bits (57), Expect = 7.9
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 1 MQNPFNYSLFNSPQTQKPQIRTQTT-----QIRE 29
+++ F + + K +R+ T + +
Sbjct: 183 LEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSD 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.404
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,468,142
Number of extensions: 141984
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 30
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)