RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047789
         (171 letters)



>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
           transferase (EPT, MurA, MurZ) {Enterobacter cloacae
           [TaxId: 550]}
          Length = 419

 Score =  106 bits (266), Expect = 2e-28
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 4/141 (2%)

Query: 31  ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL 90
           +   + GPT+L G V ISG+KN++L +L A LL      + NVP  L D  T + +L  L
Sbjct: 2   DKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPK-LKDIDTTMKLLTQL 60

Query: 91  GAKIEFNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDI 150
           G K+   ER+  + ++   V         ++ +R   + +GPL+ARFG+  V LPGGC I
Sbjct: 61  GTKV---ERDGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAI 117

Query: 151 GERPVDLYVRGLRALGAAVEI 171
           G RPVDL++ GL  LGA +++
Sbjct: 118 GARPVDLHIFGLEKLGAEIKL 138


>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 427

 Score = 86.6 bits (213), Expect = 5e-21
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 2/142 (1%)

Query: 31  ETLTITGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLL 90
           E+LT+    ++ G + + GSK+ S   L    L     +L N+     D + ML+ L  L
Sbjct: 2   ESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDS-DDVRHMLNALTAL 60

Query: 91  GAKIEFNERNKEILVNTDGV-GRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCD 149
           G     +       +  +G    AE  L       G            G   + L G   
Sbjct: 61  GVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPR 120

Query: 150 IGERPVDLYVRGLRALGAAVEI 171
           + ERP+   V  LR  GA +  
Sbjct: 121 MKERPIGHLVDALRLGGAKITY 142


>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 2/134 (1%)

Query: 36  TGPTQLSGHVPISGSKNSSLCLLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIE 95
           T    L G + + G K+ S   +    L      ++++  G  D  + + + R LG +IE
Sbjct: 5   TNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRG-EDVLSTMQVFRDLGVEIE 63

Query: 96  FNERNKEILVNTDGVGRAEPCLGEMRKIRGGFFVIGPLLARFGEAVVGLPGGCDIGERPV 155
             +    +        +A      M        +I  +LA     V    G   + +RP+
Sbjct: 64  DKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEM-FGDDSLSKRPM 122

Query: 156 DLYVRGLRALGAAV 169
           D     L+ +G ++
Sbjct: 123 DRVTLPLKKMGVSI 136


>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 216

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 57  LLAATLLCSNSCLLHNVPTGLSDTKTMLSILRLLGAKIEFNERN 100
           LLAA  L     +L N+     D + ML+ L  LG     +   
Sbjct: 6   LLAA--LAHGKTVLTNLLDS-DDVRHMLNALTALGVSYTLSADR 46


>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2
          (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId:
          3702]}
          Length = 83

 Score = 23.1 bits (50), Expect = 9.5
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 27 IREAETLTITGP------TQLSGHVPISGSKNSSLCLLAATLL 63
          I E ++L ++G         L G V ++      L +    ++
Sbjct: 33 IVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVV 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,457
Number of extensions: 24735
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 5
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)