BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047791
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 12/181 (6%)
Query: 4 ALEVQVLARESIKPAYPTPQHLRNFKLSLMDQINFPVYVSTIFLYK--ADNNVRAEQMSQ 61
A +++ ++ E I P+ PTPQ L+ +K+S +DQ+ ++ I Y D+N+ Q SQ
Sbjct: 2 APQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQ 61
Query: 62 RLKSSLSKTLTKFYPFAGRVKDDFSIECNDEGAEYVEALANGFLFEYLQ------KPDQN 115
LK SLSK LT FYP AGR+ + S++CND G +VEA L + +Q K DQ
Sbjct: 62 HLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQY 121
Query: 116 LLRDFHPFNYAESPVASNGCPMLRIQATFFKCGGLAITICTCHKLIDGVSLGIFVNSWTT 175
L +P E + P L ++ +FF+CGG AI + HK+ D +SL F+N+WT
Sbjct: 122 LPSAAYPGGKIE---VNEDVP-LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
Query: 176 T 176
T
Sbjct: 178 T 178
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 4 ALEVQVLARESIKPAYPTPQHLRNFKLSLMDQINFPVYVSTIFLYKADNNVRAEQMSQRL 63
A++++V ++PA TP RN S +D + + +++ Y+ + ++ L
Sbjct: 2 AMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 58
Query: 64 KSSLSKTLTKFYPFAGRVKDD----FSIECNDEGAEYVEALANGFLFEYLQ-KPDQNLLR 118
K +LS+ L FYP AGR+K D IECN EG +VEA ++G + ++ P L R
Sbjct: 59 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 118
Query: 119 DFHPFNYAESPVASNGCPMLRIQATFFKCGGLAITICTCHKLIDGVSLGIFVNSWTTTA 177
+Y++ ++S +L +Q T+FKCGG+++ + H DG S F+NSW+ A
Sbjct: 119 LIPAVDYSQG-ISSYA--LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 4 ALEVQVLARESIKPAYPTPQHLRNFKLSLMDQINFPVYVSTIFLYKADNNVRAEQMSQRL 63
+++++V ++PA TP RN S +D + + +++ Y+ + ++ L
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 61
Query: 64 KSSLSKTLTKFYPFAGRVKDD----FSIECNDEGAEYVEALANGFLFEYLQ-KPDQNLLR 118
K +LS+ L FYP AGR+K D IECN EG +VEA ++G + ++ P L R
Sbjct: 62 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 119 DFHPFNYAESPVASNGCPMLRIQATFFKCGGLAITICTCHKLIDGVSLGIFVNSWTTTA 177
+Y++ ++S +L +Q T+FKCGG+++ + H DG S F+NSW+ A
Sbjct: 122 LIPAVDYSQG-ISSYA--LLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 4 ALEVQVLARESIKPAYPTPQHLRNFKLSLMDQINFPVYVSTIFLYKADNNVRAEQMSQRL 63
+++++V ++PA TP RN S +D + + +++ Y+ + ++ L
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD-AKVL 61
Query: 64 KSSLSKTLTKFYPFAGRVKDD----FSIECNDEGAEYVEALANGFLFEYLQ-KPDQNLLR 118
K +LS+ L FYP AGR+K D IECN EG +VEA ++G + ++ P L R
Sbjct: 62 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRR 121
Query: 119 DFHPFNYAESPVASNGCPMLRIQATFFKCGGLAITICTCHKLIDGVSLGIFVNSWTTTA 177
+Y++ + +L +Q T+FK GG+++ + H DG S F+NSW+ A
Sbjct: 122 LIPAVDYSQ---GISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 56 AEQMSQRLKSSLSKTLTKFYPFAGRVKDDFSIECNDEGAEYVEALANGFLFEYLQKPDQN 115
E + +K SLS TL FYPF G++ + YVE + F D N
Sbjct: 58 TETVVPNIKHSLSITLKHFYPFVGKLVV-YPAPTKKPEICYVEGDSVAVTFAECNL-DLN 115
Query: 116 LLRDFHPFN----YAESPVASNGC--------PMLRIQATFFKCGGLAITICTCHKLIDG 163
L HP N Y P+ P+ +Q T F G+AI I H L D
Sbjct: 116 ELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDA 175
Query: 164 VSLGIFVNSWTTTA 177
+ F+ +WT+ A
Sbjct: 176 STRFCFLKAWTSIA 189
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 56 AEQMSQRLKSSLSKTLTKFYPFAGRVKDDFSIECNDEGAEYVEALANGFLFEYLQKPDQN 115
E + +K SLS TL FYPF G++ + YVE + F D N
Sbjct: 58 TETVVPNIKHSLSITLKHFYPFVGKLVV-YPAPTKKPEICYVEGDSVAVTFAECNL-DLN 115
Query: 116 LLRDFHPFN----YAESPVASNGC--------PMLRIQATFFKCGGLAITICTCHKLIDG 163
L HP N Y P+ P+ +Q T F G+AI I H L D
Sbjct: 116 ELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDA 175
Query: 164 VSLGIFVNSWTTTA 177
+ F+ +WT+ A
Sbjct: 176 STRFCFLKAWTSIA 189
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 63 LKSSLSKTLTKFYPFAGRVK--DDFSIECNDEGAEYVEALANGFLFEYLQKPDQNLLRDF 120
LK SLS TL + P AG V D+S YV + +F D N L +
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQDWS---GYPELRYVTGNSVSVIFSE-SDXDFNYLIGY 115
Query: 121 HPFNYAE---------SPVASNG---CPMLRIQATFFKCGGLAITICTCHKLIDGVSLGI 168
HP N + P + G P+L IQ T F G++I H DG ++
Sbjct: 116 HPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVK 175
Query: 169 FVNSW 173
FV +W
Sbjct: 176 FVRAW 180
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 21 TPQHLRNFKLSLMDQINFPVYVSTIFLYKADNNVRAEQMSQRLKSSLSKTLTK 73
TP +L+ + +DQ F Y I AD NV E M+ LK S +LT
Sbjct: 320 TPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNV-TEGMAAELKCRASTSLTS 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,076,095
Number of Sequences: 62578
Number of extensions: 190212
Number of successful extensions: 417
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 12
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)