BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047792
         (913 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C3KAD2|ARNA_PSEFS Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
           fluorescens (strain SBW25) GN=arnA PE=3 SV=1
          Length = 663

 Score = 37.4 bits (85), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 90  TEKDGVFGIEGTLLLRSRNTY---------SSDGGVTYVQVAKSYDPGAISHEPGVRRRR 140
           T + G F + G+LL + R             ++ GVT  ++ K  D GAI  +  V   R
Sbjct: 97  TARKGAFNLHGSLLPKYRGRAPANWVLVNGETETGVTLHRMVKRADAGAILAQQKVIIER 156

Query: 141 SLVRFRLHGFWSESSGNLCMVGTEDELPNLAAVLKLSNLKNSSVVT-----TLVSGRLEC 195
           S     LH    +++ NL      D LP LA        ++ S  T     T   G+LE 
Sbjct: 157 SDTGLTLHAKLRDAASNLL----RDALPQLAQGKLAETAQDESQATYFGRRTAADGKLEW 212

Query: 196 MSSANDL 202
              A +L
Sbjct: 213 KKPAEEL 219


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,952,878
Number of Sequences: 539616
Number of extensions: 13911689
Number of successful extensions: 28269
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28264
Number of HSP's gapped (non-prelim): 7
length of query: 913
length of database: 191,569,459
effective HSP length: 127
effective length of query: 786
effective length of database: 123,038,227
effective search space: 96708046422
effective search space used: 96708046422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)