Query 047792
Match_columns 913
No_of_seqs 139 out of 152
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11145 DUF2921: Protein of u 100.0 1E-216 2E-221 1916.6 71.4 829 35-895 1-908 (909)
2 PF11145 DUF2921: Protein of u 100.0 9.9E-42 2.1E-46 410.3 22.4 265 322-620 113-395 (909)
3 KOG0828 Predicted E3 ubiquitin 99.9 1E-24 2.2E-29 241.8 10.9 278 577-900 230-550 (636)
4 smart00679 CTNS Repeated motif 35.9 20 0.00043 26.4 1.2 26 818-844 3-28 (32)
5 PF04193 PQ-loop: PQ loop repe 32.6 14 0.00031 31.1 -0.1 40 817-857 16-55 (61)
6 TIGR00951 2A43 Lysosomal Cysti 28.0 37 0.0008 36.6 2.1 73 817-891 18-101 (220)
7 PF06191 DUF995: Protein of un 17.4 1.1E+02 0.0023 31.3 2.7 25 324-348 65-90 (145)
8 KOG2257 N-acetylglucosaminyltr 14.5 68 0.0015 32.2 0.5 48 842-889 23-71 (135)
9 COG4854 Predicted membrane pro 14.2 2.3E+02 0.0051 27.9 4.0 83 664-778 3-90 (126)
10 COG4037 Predicted membrane pro 13.5 1.6E+02 0.0034 29.8 2.7 37 665-701 15-52 (163)
No 1
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=1.1e-216 Score=1916.65 Aligned_cols=829 Identities=41% Similarity=0.677 Sum_probs=726.1
Q ss_pred ccccCCCCCCCCCCCCCCCCC------CCCCccceeee-ecCCcccCC-----C--CceeEeecCceeecCCCc-EEEEE
Q 047792 35 YSDHCNSIVPESTLNKFEPAL------SSFPRLHTGYY-TGGDEILSQ-----N--AYSLTFRTPNVYKTEKDG-VFGIE 99 (913)
Q Consensus 35 Y~~hC~~~vP~~~~~~~~~~~------~~~~~~~~gyf-~GG~~~f~~-----~--~~s~sf~~~~v~~T~~~~-v~~v~ 99 (913)
|++||++++|+++.++++.++ ++++++++||| +|||.||++ . .|+|||+|++|+||++++ |+||+
T Consensus 1 Y~~hC~svvp~a~~l~~~~~~~~~~~s~~L~~~~ggyfq~GGd~Lfp~d~s~~~~~~r~~SF~~~~V~~T~~~~~vv~Vs 80 (909)
T PF11145_consen 1 YKRHCASVVPSASELKDDDDTRSLLISFELSFFNGGYFQAGGDPLFPFDDSDSPSSLRSFSFWPTHVDRTTRPGKVVKVS 80 (909)
T ss_pred CcccccCCCCCccccccccCcccccccccccCCCCCeecCCCCCCCCCCccccccccceEEEEeeeeccccCCCcEEEEE
Confidence 899999999999976444433 33467799999 999999877 2 378999999999999999 99999
Q ss_pred EEEEEEecccccCCCCceeeecccccCCCCCCCCCCccccceeEEEEEeeeeecCCCceeccccCC--------CCCCcc
Q 047792 100 GTLLLRSRNTYSSDGGVTYVQVAKSYDPGAISHEPGVRRRRSLVRFRLHGFWSESSGNLCMVGTED--------ELPNLA 171 (913)
Q Consensus 100 atl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsf~l~G~ysessg~LCMvG~g~--------~~~~~~ 171 (913)
|+|+|+++|...... ...|++++.+.++....++++|+|+|||||||++|+|||||+|+ +++|+|
T Consensus 81 g~LtL~isr~~~~~~-------~~~~~~~~~~~~~~~~pg~ssLsf~LeG~YSe~sg~LCMVGsgs~~s~~g~~v~~~~~ 153 (909)
T PF11145_consen 81 GTLTLSISRNSARSS-------YYYYDHRRRSPEFYRWPGRSSLSFSLEGFYSEGSGVLCMVGSGSGYSNDGPPVKLDDN 153 (909)
T ss_pred EEEEEEeecCCCCcc-------ccccccccCCcceecCCCceEEEEEEEEEEEcCCCcEEEeccccccCCCCCceeeecc
Confidence 999999887643211 22333444444333333478999999999999999999999994 567889
Q ss_pred eEEEEeccCCCcceeceeeEEEeeccCCCCCCCcccEEEeecCC--CceeeeccccccccCCCCCC--cccccCCcccCC
Q 047792 172 AVLKLSNLKNSSVVTTLVSGRLECMSSANDLNYFEPISILIPPR--MSYEYSLASKDLSNEFSGGN--DTVKCLPLSSLP 247 (913)
Q Consensus 172 vvL~LryP~~~slt~~~V~G~LeS~~~~~~~~YFd~Vslls~~~--~~Y~Yt~~~~~~~~~~~~~~--~~~~~l~~~~~~ 247 (913)
|+|+|||||++|||+|+|+|+|||+|+++|++|||||+|++|++ +||+|++++++|+..|.++. ++..+++ .++.
T Consensus 154 ~vL~LryPk~~sLtsr~V~G~LeS~n~~~d~~YFd~VsLls~~~~~~~Y~Y~lv~~sc~~~~~~d~~~~~~~~~~-~~~~ 232 (909)
T PF11145_consen 154 AVLVLRYPKPSSLTSRFVTGELESLNSKSDSAYFDPVSLLSQLEGYSNYEYTLVSKSCDPPPYGDGDVGDGSSLS-DVYS 232 (909)
T ss_pred eEEEEcCCCcccccccceeEEEEecCCCCCccccceeEEEecCCCccCceEEEccccCCCCcccccccccccccc-cccC
Confidence 99999999999999999999999999999999999999999999 79999999999877665542 2334456 6788
Q ss_pred CccccccccC--CCeeeEeeCCCCCCCCccCCCCCCCCCCCCceeEEeeeeecccCceeEEEEEEeCCCccc-----ccc
Q 047792 248 RTSFCSVVLG--GNEFNLKYSSNCSSANICSPFSDSTDGYFPRVVSLKQIECLEEEKRLRVLVEFPNSSYVG-----YYH 320 (913)
Q Consensus 248 ~~~~C~~l~~--~~~~~l~y~~~c~s~~~C~Pf~~~~~~~l~~~m~~~~~~C~~~~~~~r~~~vF~~~~~~~-----~~~ 320 (913)
+.++|++|.+ .++|+|||+|+|++++.|+|+++..+. .|.+|+||++||+++ +++||++||+|+++.+ ..|
T Consensus 233 ~~~~C~~L~~~~~~~f~l~y~~~C~st~~~~~~~gp~~~-~~~~m~~~~v~C~~~-g~vrv~~vF~~~~~~e~~~~~~~r 310 (909)
T PF11145_consen 233 GNFFCSILRRFLRGSFKLEYNWDCNSTDACCSFGGPFGL-LPVRMHMQQVRCEED-GAVRVSAVFRNVSPSEHYYPARPR 310 (909)
T ss_pred CCCCChhhHhcCCCceEeEECCCCCCcccccCCCCCccc-CCceEEEEeeEecCC-CcEEEEEEEcCCCchhhccccccc
Confidence 9999999966 778999999999998889999977665 567899999999997 4999999999988743 556
Q ss_pred cCCCCceEEEEEEEecCCCceEEEEEeeccccccccccccccCceEEEEEcCCcceeeccceEEEEEEeCCC--CCCCCC
Q 047792 321 PFDPNRTLVAEGYWDDKMNKLFIVACRFLNSAESLANAYIGDCTTRLSLSFPSIWSIRQSRNIVGEIWSKKA--VSDSGY 398 (913)
Q Consensus 321 ~~~~~~tlvaEG~Wd~ssgqLCMVgC~~~~s~~S~~~~~v~dC~irL~LrfP~~~SIt~RS~V~G~I~S~~~--~sds~y 398 (913)
++++|+||+|||+||+++|||||||||++++++|.+++.++||+|||+||||++|||||||+|+|+|||+++ .+|+++
T Consensus 311 ~gl~~~tLvAEG~Wd~s~gqLCmvaCrv~~~~~s~~~~~v~dC~ir~sl~FPav~SIr~RS~v~G~I~s~~~~~~~~~~~ 390 (909)
T PF11145_consen 311 TGLSNMTLVAEGVWDSSSGQLCMVACRVGNSDDSLANAGVGDCSIRMSLWFPAVWSIRQRSIVVGQIWSNSQGSSNDPLY 390 (909)
T ss_pred ccccCceEEEEeeEcCCCCcEEEEeeeeccccccccccccCCCCceEEEEecCeEEEeecceEEEEEecCCccccCCCcc
Confidence 677899999999999999999999999999999999999999999999999999999999999999999998 788899
Q ss_pred cceeE-----EeeccCccCccCCCceeecchhchhhhcCCCCCcCccc---CCcCCCC----CCCCceEEEEeeCCCC-C
Q 047792 399 FEKIH-----FQNSENSFRTVSGLKYEYSEINRARELCWPKWKPQKSN---GKKYPSE----HSYDMQFNIRVHRPNA-N 465 (913)
Q Consensus 399 Fd~Is-----f~s~~~~~~~~sg~~Y~YT~ve~A~k~c~~~~~p~k~~---g~~yP~~----~S~dl~f~~s~~~~~~-~ 465 (913)
|+.|. +.+..+...++++.+|+|||+|+|+|+| .+++|.++| +++||++ ..+||+|+++++.+.+ +
T Consensus 391 f~~i~~~s~~~~~~~~~~~~l~~lkY~YTkvd~A~k~~-~~~~~~~~kks~~~~yP~~~~~~s~sDl~fdl~v~~s~~~~ 469 (909)
T PF11145_consen 391 FSRIVSPSELFNSFGNSSSNLSGLKYNYTKVDEAKKHC-RRNEPSKFKKSLGLSYPDNLGNYSSSDLRFDLSVRNSAGPD 469 (909)
T ss_pred hhheeeeccccccccccccCccCceeeeeeHHHHHHHH-HhcCCcccccccCCCCCCccccccHhhhcccEEEecccccc
Confidence 99887 5555666678888999999999999999 777776544 6899987 4599999999998876 6
Q ss_pred CCcccccccccCCccccccccccccCcCCCCCc------ceeecccccceeEEEEEEEEeeCCCcccCCccccccccccc
Q 047792 466 SSRGYATPLSAGDQFYPRYLYSKTPLSSSTSRP------TVQESFNRNSQVNISYKIGIRLLPGATFGGQVYSLDISRSS 539 (913)
Q Consensus 466 ~~~g~a~Pf~~g~~~~~~~~~~~~~~~~~~~r~------~~~~~~~~~~llNVSy~i~~~~~P~~~~g~~~~t~~~~~~~ 539 (913)
+.+|++.|+++|+.+.+++.. ...+...++ ....+++++.++||||+|++. ++. .
T Consensus 470 ~~~g~a~plslG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llNVSy~i~~~-------~~~---------~ 530 (909)
T PF11145_consen 470 LPSGYASPLSLGSLFGRGDPL---SADDSFSRHAASPSSPEVTEMQHSRLLNVSYEISLS-------GSI---------S 530 (909)
T ss_pred CCCCCcceEEECchhcccCcc---ccCcccccccccccccccccccccceeEEEEEEEEc-------ccc---------c
Confidence 788999999999999776554 112211111 111234555699999999995 432 3
Q ss_pred ccceeEEEEEEEeCCCCeEEEEeeccc-ccCCCCCCCCCCCcceEEEEEeCCCCCCCCCceEEEEEEecCCCCCCCcccc
Q 047792 540 YSGVEISAEGIYDSKTGQLCMVGCRSI-VSNNLSSTSDSMDCEILLNFQFPPSNPKENEDHIKGSIKSMRAESDPLYFEP 618 (913)
Q Consensus 540 ~~~~~IsAEGVYD~~tG~LCMVGCR~v-~s~~~~~~~~~~DC~I~V~l~fP~~~s~r~~~~i~G~I~S~R~~~DPL~F~~ 618 (913)
...++|+|||||||+||+|||||||++ .+|+....|+++||+|+|+|||||++ +|.++++||+|+|+|+|+|||||++
T Consensus 531 ~~~~~isaEGvYD~~~G~lclVGCR~v~~~~~~~~~~~~~DC~I~V~vq~pp~~-~~~~~~~kg~I~S~R~~~DpL~F~~ 609 (909)
T PF11145_consen 531 SNSSQISAEGVYDPKTGRLCLVGCRDVRLNWNISSNESSMDCEILVTVQFPPLD-AKVNPTIKGSISSTRDKSDPLYFEP 609 (909)
T ss_pred ceEEEEEEEeeeeCCCCeEEEEeccccccCccccccCCCCCeeEEEEEEcCCCC-CCCCCcEEEEEEeccCCCCCccccc
Confidence 357999999999999999999999999 56666666889999999999999999 7789999999999999999999999
Q ss_pred eeeechhhh-HHHHhhhhccchhhhhHHHhHhhhHHHHHhhhheecccCCCCcchhHHHHHHHHHHhhccccccchhhhc
Q 047792 619 MEVYSVSYS-ALAVKKSISKMDWEITVALISNTLACIFVGLQLLHVKKHPEVLPSISLFMLLLLTLGHMIPLMLNFEALF 697 (913)
Q Consensus 619 l~l~~~~~y-~~~~~~~i~R~d~E~im~~~s~tl~c~f~~lQL~h~k~~~~~~P~iSlvML~vqaLGy~~pLvl~~EaLF 697 (913)
++|++++|| ++|++|+|||||||+||+++|+||+|+|+++||+|+|||||++|+||||||+|||||||+|||+||||||
T Consensus 610 ~~l~~~~~~~~~q~~~~i~R~d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~n~EaLf 689 (909)
T PF11145_consen 610 LDLSTYPIYYRKQAEESIWRMDLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVLNFEALF 689 (909)
T ss_pred eeeeeccceeccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhcCHHHHc
Confidence 999999965 5599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcc--ccceeEEEEEehhhhhhhhee
Q 047792 698 LKNLDRPRVLLSRGGWLEVNEVLVRIITMVAFLLEFRLLQLSWSAKLADGQDQPGLW--LAEKRSLFVSFSLYAPGAIIF 775 (913)
Q Consensus 698 ~~~~~~~~~~~~~~~w~~~ne~~vR~~tlvAflL~lRLlqlvw~aR~~~~~~~~~~~--~se~~vl~~~l~ly~~G~li~ 775 (913)
+.++++|++++++++|+|+||++||++|||||||||||+|||||||+++.++ +..| ++||||||+|+|+|++|++|+
T Consensus 690 ~~~~~~~~~~~~~~~w~e~~e~~vr~ltmvAflL~lRL~qlvw~aR~~~~~~-~~~~~~~sek~vl~~~l~ly~~G~li~ 768 (909)
T PF11145_consen 690 KSSHNRQNIFLDSGGWLEVNEVMVRLLTMVAFLLQLRLLQLVWSARIRDGAR-KPLEPWPSEKKVLYICLPLYIAGGLIA 768 (909)
T ss_pred CcCCCCceEEeecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-CCCCCCCccceEEEEEeHHHHHHHHHh
Confidence 9888999999999999999999999999999999999999999999998874 6555 999999999999999999999
Q ss_pred eeeeccccccccc---cccCCCCCCCCCchhhhhhhhHHHHhhcchhHHHHHHhhcCCCCccccccccchhhhhhcccce
Q 047792 776 YLFNWREHNHYLG---FLSSPQRFYPQPQRWEGLKLYTVFVLDGFLLPQILFNIFRNSKDNALASSFYIGVTSLRLLPHA 852 (913)
Q Consensus 776 ~~~h~~~~~~~~~---~~~~~~~~~~~~~~w~~l~~y~gLvlD~FLLPQIi~N~~~~s~~kpLs~~fY~G~T~~Rllph~ 852 (913)
|++|+.+++.+.. ........++++..|+|||+|+||+||||||||||+|++|++|+|||+++||+|+|++|||||+
T Consensus 769 l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~GLv~D~FLLPQii~N~~~~~~~~~Ls~~fY~G~T~~Rllph~ 848 (909)
T PF11145_consen 769 LIVHASKTNSRRARREESYDSRISHQQHSWWEDLKSYAGLVLDGFLLPQIIGNAFWQSKVKPLSKSFYVGTTLVRLLPHV 848 (909)
T ss_pred hhhhhhcccccccccccccccccccccccHHHHHHHhhhHHHhhhhHHHHHHHHHhccCCcccccceeehHHHHHHHHHH
Confidence 9999997743221 1122456777899999999999999999999999999999999999999999999999999999
Q ss_pred eeeccC-----------------CCcccccccceeehHHHHHHHHHHHHHhHhCCceecc
Q 047792 853 YHALHT-----------------NADYFSDACNIIVSVGGMMFAAVIFLQQLFGGCCNDR 895 (913)
Q Consensus 853 Yd~~r~-----------------~~df~s~~~di~ip~~~~~~a~~~~~Qqr~g~~~~~p 895 (913)
||++|+ ++|||+++|||+|||++++||++||+|||||++||+|
T Consensus 849 Yd~~r~~~~~~~~~~~~~~ya~~~~dfys~awDi~Ip~~a~llA~~v~~QQr~~~~~~~~ 908 (909)
T PF11145_consen 849 YDLYRAPNYVPYFDDESYVYANPRMDFYSTAWDIVIPCGAVLLAALVYLQQRWGGRCILP 908 (909)
T ss_pred HhhccccccCcccccccccccCccccccccccceeeehHHHHHHHHHHHHhhhCCeeecc
Confidence 999998 6899999999999999999999999999999999997
No 2
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=9.9e-42 Score=410.30 Aligned_cols=265 Identities=23% Similarity=0.324 Sum_probs=203.4
Q ss_pred CCCCceEEEEEEEecCCCceEEEEEeecccccccccc-ccccCceEEEEEcCCcceeeccceEEEEEEeCCCCCCCCCcc
Q 047792 322 FDPNRTLVAEGYWDDKMNKLFIVACRFLNSAESLANA-YIGDCTTRLSLSFPSIWSIRQSRNIVGEIWSKKAVSDSGYFE 400 (913)
Q Consensus 322 ~~~~~tlvaEG~Wd~ssgqLCMVgC~~~~s~~S~~~~-~v~dC~irL~LrfP~~~SIt~RS~V~G~I~S~~~~sds~yFd 400 (913)
+...++|.+||+|++++|+|||||++ ++.+.+++ +..|.+++|+||||+++|+|+| +|.|+|+|++.++|++|||
T Consensus 113 g~ssLsf~LeG~YSe~sg~LCMVGsg---s~~s~~g~~v~~~~~~vL~LryPk~~sLtsr-~V~G~LeS~n~~~d~~YFd 188 (909)
T PF11145_consen 113 GRSSLSFSLEGFYSEGSGVLCMVGSG---SGYSNDGPPVKLDDNAVLVLRYPKPSSLTSR-FVTGELESLNSKSDSAYFD 188 (909)
T ss_pred CceEEEEEEEEEEEcCCCcEEEeccc---cccCCCCCceeeecceEEEEcCCCccccccc-ceeEEEEecCCCCCccccc
Confidence 44579999999999999999999998 67777774 5578899999999999999999 8999999999999999999
Q ss_pred eeEEeeccCccCccCCCceeecchhchhhhcCCCCCc-----CcccC-CcCCCCCC---------CCceEEEEeeCCCCC
Q 047792 401 KIHFQNSENSFRTVSGLKYEYSEINRARELCWPKWKP-----QKSNG-KKYPSEHS---------YDMQFNIRVHRPNAN 465 (913)
Q Consensus 401 ~Isf~s~~~~~~~~sg~~Y~YT~ve~A~k~c~~~~~p-----~k~~g-~~yP~~~S---------~dl~f~~s~~~~~~~ 465 (913)
+|+++++.+. +.+|+|+++ ++.|.+.... ....+ ..|.++.. .-+++++..+|...+
T Consensus 189 ~VsLls~~~~-----~~~Y~Y~lv---~~sc~~~~~~d~~~~~~~~~~~~~~~~~~C~~L~~~~~~~f~l~y~~~C~st~ 260 (909)
T PF11145_consen 189 PVSLLSQLEG-----YSNYEYTLV---SKSCDPPPYGDGDVGDGSSLSDVYSGNFFCSILRRFLRGSFKLEYNWDCNSTD 260 (909)
T ss_pred eeEEEecCCC-----ccCceEEEc---cccCCCCcccccccccccccccccCCCCCChhhHhcCCCceEeEECCCCCCcc
Confidence 9999999882 368999664 4447322111 11122 12333322 113333333444322
Q ss_pred CCcccccccccCCccccccccccccCcCCCCCcceeecccccceeEEEEEEEEeeCCCcccCCcccccccccccccceeE
Q 047792 466 SSRGYATPLSAGDQFYPRYLYSKTPLSSSTSRPTVQESFNRNSQVNISYKIGIRLLPGATFGGQVYSLDISRSSYSGVEI 545 (913)
Q Consensus 466 ~~~g~a~Pf~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~llNVSy~i~~~~~P~~~~g~~~~t~~~~~~~~~~~~I 545 (913)
.+.|+..+-+..+..|+++.++|.++ +.++|+++|+.. +| .+++|++ ..|++++++++
T Consensus 261 ----~~~~~~gp~~~~~~~m~~~~v~C~~~------------g~vrv~~vF~~~-~~----~e~~~~~-~~r~gl~~~tL 318 (909)
T PF11145_consen 261 ----ACCSFGGPFGLLPVRMHMQQVRCEED------------GAVRVSAVFRNV-SP----SEHYYPA-RPRTGLSNMTL 318 (909)
T ss_pred ----cccCCCCCcccCCceEEEEeeEecCC------------CcEEEEEEEcCC-Cc----hhhcccc-cccccccCceE
Confidence 24444433344567787666666532 457888888874 44 4555654 66888999999
Q ss_pred EEEEEEeCCCCeEEEEeecccccCCCCCCCCCCCcceEEEEEeCCCCCCCCCceEEEEEEecCC--CCCCCccccee
Q 047792 546 SAEGIYDSKTGQLCMVGCRSIVSNNLSSTSDSMDCEILLNFQFPPSNPKENEDHIKGSIKSMRA--ESDPLYFEPME 620 (913)
Q Consensus 546 sAEGVYD~~tG~LCMVGCR~v~s~~~~~~~~~~DC~I~V~l~fP~~~s~r~~~~i~G~I~S~R~--~~DPL~F~~l~ 620 (913)
+|||+||+++|||||||||.+++..+.....+.||+|+|++|||++||||+|++++|+|||++. .+||++|+++-
T Consensus 319 vAEG~Wd~s~gqLCmvaCrv~~~~~s~~~~~v~dC~ir~sl~FPav~SIr~RS~v~G~I~s~~~~~~~~~~~f~~i~ 395 (909)
T PF11145_consen 319 VAEGVWDSSSGQLCMVACRVGNSDDSLANAGVGDCSIRMSLWFPAVWSIRQRSIVVGQIWSNSQGSSNDPLYFSRIV 395 (909)
T ss_pred EEEeeEcCCCCcEEEEeeeeccccccccccccCCCCceEEEEecCeEEEeecceEEEEEecCCccccCCCcchhhee
Confidence 9999999999999999999997666666667899999999999999999999999999999999 88999999997
No 3
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-24 Score=241.82 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=194.0
Q ss_pred CCCcceEEEEEeCCCCCCCC--------CceEEEEEEecCCCCCCCcccceeeechh-----hhHHHHhhhhccchhhhh
Q 047792 577 SMDCEILLNFQFPPSNPKEN--------EDHIKGSIKSMRAESDPLYFEPMEVYSVS-----YSALAVKKSISKMDWEIT 643 (913)
Q Consensus 577 ~~DC~I~V~l~fP~~~s~r~--------~~~i~G~I~S~R~~~DPL~F~~l~l~~~~-----~y~~~~~~~i~R~d~E~i 643 (913)
..-|+|....|...+.++.+ .....|..++..-..+|-+|-++.++... +|.+.++. ..
T Consensus 230 e~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~yspDC~v~l~l~ntkg~~~vl~n~aVr~--------tl 301 (636)
T KOG0828|consen 230 EKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYSPDCFVPLTLNNTKGNVEVLYNKAVRY--------TL 301 (636)
T ss_pred HHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccCCCcCcceeeeccccchhhhhhhhHHH--------HH
Confidence 46688888888887776554 34566666766667789999999999885 57777776 33
Q ss_pred HHHhHhhhHHHHHhhhheecccCCCCcchhHHHHHHHHHH--hhccccccch----hhhccccCCCcceeccCCccchhh
Q 047792 644 VALISNTLACIFVGLQLLHVKKHPEVLPSISLFMLLLLTL--GHMIPLMLNF----EALFLKNLDRPRVLLSRGGWLEVN 717 (913)
Q Consensus 644 m~~~s~tl~c~f~~lQL~h~k~~~~~~P~iSlvML~vqaL--Gy~~pLvl~~----EaLF~~~~~~~~~~~~~~~w~~~n 717 (913)
|..+...-+-+++.+|+.|-. |...-.+|++|+++||+ ||++-|.+.+ |.||..... ..|++
T Consensus 302 l~~~~~~~~~~~Ll~q~~~~s--ps~v~rlSf~~i~mqa~mD~~Lall~lta~~vve~lylpfvt--------aAF~~-- 369 (636)
T KOG0828|consen 302 LYIFIVLSQIFLLLRQMRINS--PSHVQRLSFLTIAMQAGMDAYLALLFLTANAVVESLYLPFVT--------AAFFK-- 369 (636)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--------HHHHH--
Confidence 443333333344445665533 77788999999999999 8888888776 666664311 22222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh---------hcccCCCC------CCCccccceeEEEEEehhhhhhhheeeeeeccc
Q 047792 718 EVLVRIITMVAFLLEFRLLQLSWS---------AKLADGQD------QPGLWLAEKRSLFVSFSLYAPGAIIFYLFNWRE 782 (913)
Q Consensus 718 e~~vR~~tlvAflL~lRLlqlvw~---------aR~~~~~~------~~~~~~se~~vl~~~l~ly~~G~li~~~~h~~~ 782 (913)
++ ++.++++|+|..+|| |-++...+ .++.-+-|.+. |- .-+.|+++++++-..-
T Consensus 370 -----fV--~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~e~s~-~g---~l~grf~fm~lv~~~~ 438 (636)
T KOG0828|consen 370 -----FV--VFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASNENSP-WG---ILLGRFLFMYLVVCIA 438 (636)
T ss_pred -----HH--HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccccCCc-ch---hhHHhHHHHHHHHHHH
Confidence 33 666999999999999 44432221 11111224332 21 1222344455442211
Q ss_pred cccccccccCCCCCCCCCchhh----hhhhhHHHH-hhcchhHHHHHHhhcCCCCccccccccchhhhhhcccceeeecc
Q 047792 783 HNHYLGFLSSPQRFYPQPQRWE----GLKLYTVFV-LDGFLLPQILFNIFRNSKDNALASSFYIGVTSLRLLPHAYHALH 857 (913)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~w~----~l~~y~gLv-lD~FLLPQIi~N~~~~s~~kpLs~~fY~G~T~~Rllph~Yd~~r 857 (913)
. + ..+.|- ..-+|+.+. .+.||+|||+.|++++-.+|||++.|.+|+|++||+|++|.+.+
T Consensus 439 ~------l--------~s~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~Tv~Rl~~plyVF~~ 504 (636)
T KOG0828|consen 439 S------L--------YSAFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYILGMTVTRLAIPLYVFGC 504 (636)
T ss_pred H------h--------hccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhhhHhHHhhhcceEEEec
Confidence 0 0 123452 333445544 55999999999999955589999999999999999999999888
Q ss_pred CCCcccc----cccceeehHHHHHHHHHHHHHhHhCCceeccccccc
Q 047792 858 TNADYFS----DACNIIVSVGGMMFAAVIFLQQLFGGCCNDRKKFID 900 (913)
Q Consensus 858 ~~~df~s----~~~di~ip~~~~~~a~~~~~Qqr~g~~~~~p~~~r~ 900 (913)
+.||++ .+|++.+++|++.|+.++++|+.+|+|||+||++.-
T Consensus 505 -s~n~~r~~p~~~f~v~L~lwmlFQv~vLl~Qd~lGsR~FlPkk~lp 550 (636)
T KOG0828|consen 505 -SENFMRVEPKYFFAVGLVLWMLFQVLVLLVQDYLGSRCFLPKKFLP 550 (636)
T ss_pred -chhhhccCCchhhHHHHHHHHHHHHHHHHHHhhcccccccchhhCc
Confidence 589985 889999999999999999999999999999999874
No 4
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=35.90 E-value=20 Score=26.41 Aligned_cols=26 Identities=38% Similarity=0.416 Sum_probs=21.5
Q ss_pred hhHHHHHHhhcCCCCccccccccchhh
Q 047792 818 LLPQILFNIFRNSKDNALASSFYIGVT 844 (913)
Q Consensus 818 LLPQIi~N~~~~s~~kpLs~~fY~G~T 844 (913)
.+|||+.|.-.++ .+-|+..|++-.+
T Consensus 3 ~~PQi~~~~~~ks-~~glS~~~~~l~~ 28 (32)
T smart00679 3 LLPQIIKNYRRKS-TEGLSILFVLLWL 28 (32)
T ss_pred chhHHHHHHHcCC-cCcCCHHHHHHHH
Confidence 5899999998887 8899998877443
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=32.57 E-value=14 Score=31.07 Aligned_cols=40 Identities=30% Similarity=0.247 Sum_probs=32.5
Q ss_pred chhHHHHHHhhcCCCCccccccccchhhhhhcccceeeecc
Q 047792 817 FLLPQILFNIFRNSKDNALASSFYIGVTSLRLLPHAYHALH 857 (913)
Q Consensus 817 FLLPQIi~N~~~~s~~kpLs~~fY~G~T~~Rllph~Yd~~r 857 (913)
-++|||+.|.-.++ .+-|+.+++.-.++.-++--+|-+..
T Consensus 16 ~~lPQi~~~~k~ks-~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 16 SFLPQIIKNYKRKS-TGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHhHHHHHHHccc-cccccHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999888 89999999988887777666665444
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=27.95 E-value=37 Score=36.55 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=49.7
Q ss_pred chhHHHHHHhhcCCCCccccccccchhhhhhcccceeee-------ccCCCccccccc----ceeehHHHHHHHHHHHHH
Q 047792 817 FLLPQILFNIFRNSKDNALASSFYIGVTSLRLLPHAYHA-------LHTNADYFSDAC----NIIVSVGGMMFAAVIFLQ 885 (913)
Q Consensus 817 FLLPQIi~N~~~~s~~kpLs~~fY~G~T~~Rllph~Yd~-------~r~~~df~s~~~----di~ip~~~~~~a~~~~~Q 885 (913)
-.+|||+.|.-+++ ++-||..|+.--++.=..--+|.. ++. .--++.+. |+++-+-++++.++++.|
T Consensus 18 ~~~PQi~~n~k~ks-~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~-~~~~~~~~v~~edl~~ai~~~il~~l~~~q 95 (220)
T TIGR00951 18 SFYPQIIKNWRRKS-AEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITN-EFPLSSPGVTQNDVFFTLHAILICFIVLHQ 95 (220)
T ss_pred HHhhHHHHHHhccc-cCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhh-ccccccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35899999998888 899999998855444444344532 221 11223333 688888888889999999
Q ss_pred hHhCCc
Q 047792 886 QLFGGC 891 (913)
Q Consensus 886 qr~g~~ 891 (913)
..+.++
T Consensus 96 ~~~~~~ 101 (220)
T TIGR00951 96 CGDYER 101 (220)
T ss_pred Hhhccc
Confidence 876644
No 7
>PF06191 DUF995: Protein of unknown function (DUF995); InterPro: IPR009337 This is a family of uncharacterised Proteobacteria proteins.
Probab=17.38 E-value=1.1e+02 Score=31.34 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCceEEEEEEEec-CCCceEEEEEee
Q 047792 324 PNRTLVAEGYWDD-KMNKLFIVACRF 348 (913)
Q Consensus 324 ~~~tlvaEG~Wd~-ssgqLCMVgC~~ 348 (913)
.+..-.+||.|.- ..|||||.+--.
T Consensus 65 ~~~~s~g~GrW~Vt~~GklC~~a~W~ 90 (145)
T PF06191_consen 65 KGSESYGEGRWFVTDNGKLCFRATWH 90 (145)
T ss_pred CCcceeeeeEEEECCCCCEEEEeEEE
Confidence 4567789999985 566999999873
No 8
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=14.50 E-value=68 Score=32.25 Aligned_cols=48 Identities=6% Similarity=-0.031 Sum_probs=32.1
Q ss_pred hhhhhhcccceeeeccCCCccc-ccccceeehHHHHHHHHHHHHHhHhC
Q 047792 842 GVTSLRLLPHAYHALHTNADYF-SDACNIIVSVGGMMFAAVIFLQQLFG 889 (913)
Q Consensus 842 G~T~~Rllph~Yd~~r~~~df~-s~~~di~ip~~~~~~a~~~~~Qqr~g 889 (913)
+++++..+-|.=-+.+..-++| ||.|-++||.+....+.+.++||--+
T Consensus 23 ViylIWai~P~~~l~~~gi~y~Psk~WalAip~~l~v~~l~~~v~ll~~ 71 (135)
T KOG2257|consen 23 VIYLIWAITPVPILESLGITYYPSKYWALAIPTYLLVAVLLAYVFLLGY 71 (135)
T ss_pred HHHHHhhcccHHHHhhcCceeehHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444433334345555 69999999999988888888887543
No 9
>COG4854 Predicted membrane protein [Function unknown]
Probab=14.22 E-value=2.3e+02 Score=27.91 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=49.2
Q ss_pred ccCCCCcchhHHHHHHHHHHhhccccccchhhhccccCCCcceeccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047792 664 KKHPEVLPSISLFMLLLLTLGHMIPLMLNFEALFLKNLDRPRVLLSRGGWLEVNEVLVRIITMVAFLLEFRLLQLSWSAK 743 (913)
Q Consensus 664 k~~~~~~P~iSlvML~vqaLGy~~pLvl~~EaLF~~~~~~~~~~~~~~~w~~~ne~~vR~~tlvAflL~lRLlqlvw~aR 743 (913)
|++....|-+-++|..--++||..| +|.| +++++||++-.-++-++ |.|
T Consensus 3 ~~mr~~~~l~~ivm~~GA~~g~a~~---------------------sGn~---------~iav~af~ag~~~l~l~-k~R 51 (126)
T COG4854 3 KRMRYTKILFAIVMAVGAAVGYAVE---------------------SGNW---------FIAVIAFFAGAALLSLV-KRR 51 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHheeec---------------------CCCe---------ehHHHHHHHHHHHHHHH-HHH
Confidence 4555667788888888888887766 3556 56778887766655554 444
Q ss_pred ccCCCCCCCcc--ccc---eeEEEEEehhhhhhhheeeee
Q 047792 744 LADGQDQPGLW--LAE---KRSLFVSFSLYAPGAIIFYLF 778 (913)
Q Consensus 744 ~~~~~~~~~~~--~se---~~vl~~~l~ly~~G~li~~~~ 778 (913)
-..- -|.++. ++| +++..+..--..+|+.+.+.+
T Consensus 52 v~~v-vEDER~lrvse~aSr~TiqV~~is~Al~gavl~a~ 90 (126)
T COG4854 52 VDEV-VEDERTLRVSERASRRTIQVFSISAALGGAVLLAL 90 (126)
T ss_pred HHHH-hhhHHHHHHHHhhhheeEEEEEehHHHHHHHHHHh
Confidence 3211 122322 333 566666665566666555444
No 10
>COG4037 Predicted membrane protein [Function unknown]
Probab=13.53 E-value=1.6e+02 Score=29.76 Aligned_cols=37 Identities=35% Similarity=0.615 Sum_probs=33.3
Q ss_pred cCCCCcchhHHHHHHHHHH-hhccccccchhhhccccC
Q 047792 665 KHPEVLPSISLFMLLLLTL-GHMIPLMLNFEALFLKNL 701 (913)
Q Consensus 665 ~~~~~~P~iSlvML~vqaL-Gy~~pLvl~~EaLF~~~~ 701 (913)
++||.+|.+=-+.|++++| |.++|--+|-|-|+-+..
T Consensus 15 ~~Pe~~prvf~~~Lal~~l~Gll~ph~lnp~QLYPrP~ 52 (163)
T COG4037 15 RRPESMPRVFCLLLALLALLGLLCPHSLNPEQLYPRPA 52 (163)
T ss_pred hCcchhHHHHHHHHHHHHHHHhhCccccCHHHcCCCCC
Confidence 4899999999999999988 999999999999987664
Done!