Query 047792
Match_columns 913
No_of_seqs 139 out of 152
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 14.4 21 0.00071 25.6 -1.2 15 816-830 9-23 (27)
2 2ebo_A Ebola virus envelope gl 13.8 60 0.002 27.4 1.1 16 879-894 32-47 (74)
3 1y0g_A Protein YCEI; lipid bin 11.2 1.5E+02 0.0053 29.4 3.5 28 78-107 103-130 (191)
4 3iz6_D 40S ribosomal protein S 10.9 3.9E+02 0.013 28.5 6.5 84 95-211 123-211 (265)
5 3kbg_A 30S ribosomal protein S 9.3 7.4E+02 0.025 25.5 7.7 85 95-211 87-176 (213)
6 2fgs_A Putative periplasmic pr 8.9 2.6E+02 0.0089 27.5 4.1 37 70-107 70-107 (179)
7 1wub_A Conserved hypothetical 7.7 2.8E+02 0.0096 27.1 3.7 38 69-107 68-106 (178)
8 3nfg_A DNA-directed RNA polyme 7.4 2.2E+02 0.0074 26.3 2.5 19 548-566 76-94 (102)
9 3j20_E 30S ribosomal protein S 6.5 5.8E+02 0.02 26.8 5.6 86 95-212 124-217 (243)
10 2kkt_A Ataxin-7-like protein 3 6.2 90 0.0031 27.7 -0.7 14 548-561 17-30 (84)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=14.39 E-value=21 Score=25.55 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=11.0
Q ss_pred cchhHHHHHHhhcCC
Q 047792 816 GFLLPQILFNIFRNS 830 (913)
Q Consensus 816 ~FLLPQIi~N~~~~s 830 (913)
-+|||+||+|+=-..
T Consensus 9 ~~LLPPII~~aGy~l 23 (27)
T 1y4e_A 9 LFLLPPIILDAGYFL 23 (27)
T ss_dssp HHHSCCSSHHHHTTG
T ss_pred eeccCccEeeccccc
Confidence 468999999874443
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=13.79 E-value=60 Score=27.44 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=11.9
Q ss_pred HHHHHHHhHhCCceec
Q 047792 879 AAVIFLQQLFGGCCND 894 (913)
Q Consensus 879 a~~~~~Qqr~g~~~~~ 894 (913)
-|+=|+-|||||-|-+
T Consensus 32 ~aidfll~rwggtc~i 47 (74)
T 2ebo_A 32 KAIDFLLQRWGGTCHI 47 (74)
T ss_dssp HHHHHHHGGGTCHHHH
T ss_pred HHHHHHHHHhCCccee
Confidence 3567888999997643
No 3
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=11.20 E-value=1.5e+02 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=20.9
Q ss_pred ceeEeecCceeecCCCcEEEEEEEEEEEec
Q 047792 78 YSLTFRTPNVYKTEKDGVFGIEGTLLLRSR 107 (913)
Q Consensus 78 ~s~sf~~~~v~~T~~~~v~~v~atl~l~~~ 107 (913)
+...|.-.++..+. ++ ++|+|+|||+|-
T Consensus 103 P~atF~st~v~~~g-~~-~~v~G~LTi~Gv 130 (191)
T 1y0g_A 103 PQATFTSTSVKKDG-DE-LDITGDLTLNGV 130 (191)
T ss_dssp CEEEEEEEEEEEET-TE-EEEEEEEEETTE
T ss_pred CeEEEEEEEEEEcC-CC-EEEEEEEEECCE
Confidence 44777766676654 45 999999999874
No 4
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=10.90 E-value=3.9e+02 Score=28.50 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=55.4
Q ss_pred EEEEEEEEEEEecccccCCCCceeeecccccCCCCCCCCCCccccceeEEEEEe-----eeeecCCCceeccccCCCCCC
Q 047792 95 VFGIEGTLLLRSRNTYSSDGGVTYVQVAKSYDPGAISHEPGVRRRRSLVRFRLH-----GFWSESSGNLCMVGTEDELPN 169 (913)
Q Consensus 95 v~~v~atl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsf~l~-----G~ysessg~LCMvG~g~~~~~ 169 (913)
+.||+..-+..+..... .|+|---.+|+.+.+.. ..++.++++ .|.--..|.||||=.|...--
T Consensus 123 LcKV~~k~~~~~G~pql----~tHDGrti~~~dp~ik~-------~DTv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~Gr 191 (265)
T 3iz6_D 123 LCKVRSVQFGQKGIPYL----NTYDGRTIRYPDPIIKA-------NDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGR 191 (265)
T ss_dssp EEEEEEEECCSSSCCEE----EETTSCCCBSCSSCCCT-------TCEEEECSSSCCEEEEECCSTTCEEEECSSSSCSC
T ss_pred EEEEEEEEEccCCceEE----EeecceEEecCCCCccc-------CCEEEEECCCCceeeEEEccCCCEEEEEcCCcceE
Confidence 78888888777776544 56664445777666665 677777775 677778999999955532222
Q ss_pred cceEEEEeccCCCcceeceeeEEEeeccCCCCCCCcccEEEe
Q 047792 170 LAAVLKLSNLKNSSVVTTLVSGRLECMSSANDLNYFEPISIL 211 (913)
Q Consensus 170 ~~vvL~LryP~~~slt~~~V~G~LeS~~~~~~~~YFd~Vsll 211 (913)
- |++.....+. ..||.|++=
T Consensus 192 i--------------------G~I~~ie~~~--gs~~iV~vk 211 (265)
T 3iz6_D 192 V--------------------GVIKNREKHK--GSFETIHVE 211 (265)
T ss_dssp E--------------------EEEEEEECCS--SSCCEEEEC
T ss_pred E--------------------EEEEEEEEec--CCCcEEEEE
Confidence 1 6666665432 247877775
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=9.34 E-value=7.4e+02 Score=25.54 Aligned_cols=85 Identities=7% Similarity=0.062 Sum_probs=55.0
Q ss_pred EEEEEEEEEEEecccccCCCCceeeecccccCCCCCCCCCCccccceeEEEEE-----eeeeecCCCceeccccCCCCCC
Q 047792 95 VFGIEGTLLLRSRNTYSSDGGVTYVQVAKSYDPGAISHEPGVRRRRSLVRFRL-----HGFWSESSGNLCMVGTEDELPN 169 (913)
Q Consensus 95 v~~v~atl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsf~l-----~G~ysessg~LCMvG~g~~~~~ 169 (913)
+.||+...+..+..... .|+|---.+|+.+.+.. ..++.+++ ..+.--..|.||||=.|...--
T Consensus 87 LcKV~~k~~~~~G~~~l----~~HDGrti~~pd~~ik~-------~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~Gr 155 (213)
T 3kbg_A 87 LLKVRSKVIAPGNRIQL----GTHDGRTFITDDKSIKV-------GDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQ 155 (213)
T ss_dssp EEEEEEEEEEGGGEEEE----EETTSCEEEECCTTCCT-------TCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTC
T ss_pred EEEEEEEEEecCCeeEE----EecCccEEEcCCCCccc-------CCEEEEECCCCceeeEEEcCCCCEEEEECCCcceE
Confidence 78899999998876554 56665556675555555 56777766 5677777899999955532221
Q ss_pred cceEEEEeccCCCcceeceeeEEEeeccCCCCCCCcccEEEe
Q 047792 170 LAAVLKLSNLKNSSVVTTLVSGRLECMSSANDLNYFEPISIL 211 (913)
Q Consensus 170 ~~vvL~LryP~~~slt~~~V~G~LeS~~~~~~~~YFd~Vsll 211 (913)
- |++...... ..++||.|++=
T Consensus 156 i--------------------G~I~~ie~~-~gs~~~iV~v~ 176 (213)
T 3kbg_A 156 T--------------------GTISKIEAK-EGSSANLVHFQ 176 (213)
T ss_dssp E--------------------EEEEEECCC-SCC--CEEEET
T ss_pred E--------------------EEEEEEEEc-cCCCCCEEEEE
Confidence 1 666666532 23457888874
No 6
>2fgs_A Putative periplasmic protein; lipid binding protein, structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Campylobacter jejuni}
Probab=8.88 E-value=2.6e+02 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=25.4
Q ss_pred CcccCCC-CceeEeecCceeecCCCcEEEEEEEEEEEec
Q 047792 70 DEILSQN-AYSLTFRTPNVYKTEKDGVFGIEGTLLLRSR 107 (913)
Q Consensus 70 ~~~f~~~-~~s~sf~~~~v~~T~~~~v~~v~atl~l~~~ 107 (913)
+++|+.. .+...|.-.++..+. ++-++|+|+|||.|-
T Consensus 70 ~dfFd~~~~P~atF~st~v~~~g-~~~~~v~G~LTi~Gv 107 (179)
T 2fgs_A 70 DDFFKAKKYPDMTFTMKKYEKID-NEKGKMTGTLTIAGV 107 (179)
T ss_dssp TTTTCTTTCCEEEEEEEEEEESS-SSEEEEEEEEEETTE
T ss_pred ccccCcccCCEEEEEEEEEEECC-CceEEEEEEEEECcE
Confidence 3455442 344788766776554 458999999999874
No 7
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus} SCOP: b.61.6.1
Probab=7.69 E-value=2.8e+02 Score=27.12 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCcccCCC-CceeEeecCceeecCCCcEEEEEEEEEEEec
Q 047792 69 GDEILSQN-AYSLTFRTPNVYKTEKDGVFGIEGTLLLRSR 107 (913)
Q Consensus 69 G~~~f~~~-~~s~sf~~~~v~~T~~~~v~~v~atl~l~~~ 107 (913)
++++|+.. ++...|.-.++..+. ++-++|+|+|||+|-
T Consensus 68 s~dffd~~~~P~~tF~st~v~~~g-~~~~~v~G~LTi~Gv 106 (178)
T 1wub_A 68 SADFLHAEQYPEIRFVSTQIEPLG-GNRYRIQGNLTIRDI 106 (178)
T ss_dssp STTTTCTTTCCEEEEEEEEEEEEE-TTEEEEEEEEEETTE
T ss_pred CccccccccCCEEEEEEEEEEECC-CCcEEEEEEEEECcE
Confidence 44566653 445788766666544 467999999999874
No 8
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=7.36 E-value=2.2e+02 Score=26.27 Aligned_cols=19 Identities=21% Similarity=0.608 Sum_probs=14.9
Q ss_pred EEEEeCCCCeEEEEeeccc
Q 047792 548 EGIYDSKTGQLCMVGCRSI 566 (913)
Q Consensus 548 EGVYD~~tG~LCMVGCR~v 566 (913)
=|||||+||+|=++-=+-+
T Consensus 76 VgVyDp~t~~lel~~Apl~ 94 (102)
T 3nfg_A 76 VGLYDKQSGKINLYRAPVV 94 (102)
T ss_dssp EEEEETTTTEEEEEEECEE
T ss_pred EEEEcCCCCeEEEEEecce
Confidence 4899999999987765543
No 9
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=6.52 E-value=5.8e+02 Score=26.81 Aligned_cols=86 Identities=8% Similarity=0.052 Sum_probs=54.3
Q ss_pred EEEEEEEEEEEecccccCCCCceeeecccccC---CCCCCCCCCccccceeEEEEEe-----eeeecCCCceeccccCCC
Q 047792 95 VFGIEGTLLLRSRNTYSSDGGVTYVQVAKSYD---PGAISHEPGVRRRRSLVRFRLH-----GFWSESSGNLCMVGTEDE 166 (913)
Q Consensus 95 v~~v~atl~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lsf~l~-----G~ysessg~LCMvG~g~~ 166 (913)
+.||+..-+..+..... .|+|---.+|+ .+.+.. ..++.++++ .|.--..|.||||=.|..
T Consensus 124 LcKV~~k~~~~~G~~~l----~~hDgr~i~~p~~~d~~ik~-------~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n 192 (243)
T 3j20_E 124 PLRIRNKRMIKGARVQL----NFHDGTNHIVSIAEKDNYFT-------SYTVLMKVPEREILEVLPFEKGAYVFVTQGKN 192 (243)
T ss_dssp EECCSCEEEETTTEEEE----CCSSCCCEECSSSSCSSCSS-------CEEEEEETTTTEEEEEEECCTTCEEEECSSSS
T ss_pred EEEEeeeEEccCCeeEE----EecCCceEEcccccCCCccc-------CCEEEEECCCCCeeeEEeccCCCEEEEECCcc
Confidence 66777777777765544 45664456664 344444 567777774 778888999999955532
Q ss_pred CCCcceEEEEeccCCCcceeceeeEEEeeccCCCCCCCcccEEEee
Q 047792 167 LPNLAAVLKLSNLKNSSVVTTLVSGRLECMSSANDLNYFEPISILI 212 (913)
Q Consensus 167 ~~~~~vvL~LryP~~~slt~~~V~G~LeS~~~~~~~~YFd~Vslls 212 (913)
.--- |++..... ...++||.|+|=-
T Consensus 193 ~Gri--------------------G~I~~ie~-~~gs~~~~V~v~d 217 (243)
T 3j20_E 193 VARK--------------------GRIVEIKR-FPMGWPDVVTIED 217 (243)
T ss_dssp TTCE--------------------EEEEECCC-CCSSSCCEEEEEE
T ss_pred ceEE--------------------EEEEEEEE-ecCCCceEEEEEc
Confidence 2211 67776653 2345688888853
No 10
>2kkt_A Ataxin-7-like protein 3; zinc finger, transcription, activator, alternative splicing, chromatin regulator, metal-binding, nucleus; NMR {Homo sapiens}
Probab=6.18 E-value=90 Score=27.73 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.8
Q ss_pred EEEEeCCCCeEEEE
Q 047792 548 EGIYDSKTGQLCMV 561 (913)
Q Consensus 548 EGVYD~~tG~LCMV 561 (913)
=||+++++|++|-.
T Consensus 17 CGVi~~~t~k~CTR 30 (84)
T 2kkt_A 17 CGVISEHTKKMCTR 30 (84)
T ss_dssp CCCCBTTTTBSCCS
T ss_pred cceEcCCCCCcccc
Confidence 49999999999953
Done!