BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047793
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 310 bits (794), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 147/217 (67%), Positives = 169/217 (77%), Gaps = 1/217 (0%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
VPA++DWRK GAVT +K+QG CGSCWAFS + A EGI Q+ T KL+SLSEQELV CDT
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD- 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+ GC GG M+ AF+FI GITTEANYPY+A DGTC+ + E + I G+E VP N
Sbjct: 61 QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPEND 120
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E ALLKAVANQPV+V+IDA GS FQFYS GVFTG CGTELDHGV VGYG T +GTKYW
Sbjct: 121 ENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWT 180
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
VKNSWG WGE+GYIRM+R I KEGLCGIAM++SYP
Sbjct: 181 VKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYP 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 135/224 (60%), Positives = 170/224 (75%), Gaps = 4/224 (1%)
Query: 103 VIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCD 162
V D+P ++DWR+ GAVT +K+QG CGSCWAFS V + EGI + TG L+SLSEQEL+ CD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 163 TSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASH---VAKIKGYE 219
T+ D GC+GG M++AF++I +N G+ TEA YPY+A GTCN A + V I G++
Sbjct: 61 TADND-GCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQ 119
Query: 220 TVPANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATAN 279
VPANSEE L +AVANQPV+V+++ASG AF FYS GVFTG+CGTELDHGV VGYG +
Sbjct: 120 DVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAED 179
Query: 280 GTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
G YW VKNSWG SWGE+GYIR+++D A GLCGIAM++SYP
Sbjct: 180 GKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/219 (57%), Positives = 159/219 (72%), Gaps = 4/219 (1%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTS 164
D+P ++DWR+NGAV P+KNQG CGSCWAFS VAA EGI Q+ TG LISLSEQ+LV C T+
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 165 GVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+HGC GG M AF+FI++N GI +E YPY+ DG CN T A V I YE VP++
Sbjct: 62 --NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAP-VVSIDSYENVPSH 118
Query: 225 SEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYW 284
+E++L KAVANQPV+V++DA+G FQ Y SG+FTG C +H +T VGYG T N +W
Sbjct: 119 NEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYG-TENDKDFW 177
Query: 285 LVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+VKNSWG +WGE GYIR +R+I+ +G CGI +SYP
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/308 (45%), Positives = 185/308 (60%), Gaps = 5/308 (1%)
Query: 16 LSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQ 75
L + WM + K Y+N +EK RF IFKDN+ +I+ N N Y L +NEFAD +N
Sbjct: 18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNS-YWLGLNEFADLSND 76
Query: 76 EFKAFRNGYRRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSA 135
EF G + F E+++++P +DWRK GAVTP+++QG CGSCWAFSA
Sbjct: 77 EFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSA 136
Query: 136 VAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYP 195
VA EGI ++ TGKL+ LSEQELV C+ HGC+GG A +++ N GI + YP
Sbjct: 137 VATVEGINKIRTGKLVELSEQELVDCERR--SHGCKGGYPPYALEYVAKN-GIHLRSKYP 193
Query: 196 YQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQPVAVSIDASGSAFQFYSSG 255
Y+A GTC + K G V N+E LL A+A QPV+V +++ G FQ Y G
Sbjct: 194 YKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGG 253
Query: 256 VFTGDCGTELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGI 315
+F G CGT++D VTAVGYG + L+KNSWGT+WGE+GYIR+KR G+CG+
Sbjct: 254 IFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 312
Query: 316 AMDSSYPT 323
S YPT
Sbjct: 313 YKSSYYPT 320
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 157/218 (72%), Gaps = 5/218 (2%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P+ +DWR GAV IKNQ CGSCWAFSAVAA E I ++ TG+LISLSEQELV CDT+
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
HGC GG M +AF++II N GI T+ NYPY AV G+C V I G++ V N+
Sbjct: 60 -SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRL--RVVSINGFQRVTRNN 116
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL AVA+QPV+V+++A+G+ FQ YSSG+FTG CGT +HGV VGYG T +G YW+
Sbjct: 117 ESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYG-TQSGKNYWI 175
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
V+NSWG +WG +GYI M+R++ + GLCGIA SYPT
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 258 bits (658), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 126/218 (57%), Positives = 155/218 (71%), Gaps = 2/218 (0%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR +GAV IK+QG CGSCWAFS +AA EGI ++ TG LISLSEQELV C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
GC+GG M D F+FII+N GI TEANYPY A +G CN + I YE VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL AVA QPV+V+++A+G FQ YSSG+FTG CGT +DH VT VGYG T G YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
VKNSWGT+WGEEGY+R++R++ G CGIA +SYP
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPV 216
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 179/313 (57%), Gaps = 18/313 (5%)
Query: 16 LSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQ 75
L + E WM K+ K+YKN +EK RF IFKDN+++I+ N N Y L +N FAD +N
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFADMSND 120
Query: 76 EFKAFRNGYRRPDGLTSRKGTSFKYENV-----IDVPATMDWRKNGAVTPIKNQGPCGSC 130
EFK G + T T YE V +++P +DWR+ GAVTP+KNQG CGS
Sbjct: 121 EFKEKYTGSIAGNYTT----TELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSA 176
Query: 131 WAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITT 190
WAFSAV+ E I ++ TG L SEQEL+ CD +GC GG A + + GI
Sbjct: 177 WAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR--SYGCNGGYPWSALQLVAQY-GIHY 233
Query: 191 EANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQPVAVSIDASGSAFQ 250
YPY+ V C + + AK G V +E ALL ++ANQPV+V ++A+G FQ
Sbjct: 234 RNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQ 293
Query: 251 FYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKE 310
Y G+F G CG ++DH V AVGYG Y L++NSWGT WGE GYIR+KR
Sbjct: 294 LYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKRGTGNSY 348
Query: 311 GLCGIAMDSSYPT 323
G+CG+ S YP
Sbjct: 349 GVCGLYTSSFYPV 361
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 125/218 (57%), Positives = 154/218 (70%), Gaps = 2/218 (0%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR +GAV IK+QG CGS WAFS +AA EGI ++ TG LISLSEQELV C +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
GC+GG M D F+FII+N GI TEANYPY A +G CN + I YE VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL AVA QPV+V+++A+G FQ YSSG+FTG CGT +DH VT VGYG T G YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
VKNSWGT+WGEEGY+R++R++ G CGIA +SYP
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPV 216
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P+ +DWR GAV IK+QG CG CWAFSA+A EGI ++ TG LISLSEQEL+ C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
GC GG + D F+FII+N GI TE NYPY A DG CN + I YE VP N+
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL AV QPV+V++DA+G AF+ YSSG+FTG CGT +DH VT VGYG T G YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYG-TEGGIDYWI 179
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
VKNSW T+WGEEGY+R+ R++ G CGIA SYP
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPV 216
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 127/218 (58%), Positives = 150/218 (68%), Gaps = 12/218 (5%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWRK GAVTP+KNQG CGSCWAFS V+ E I Q+ TG LISLSEQELV CD
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+HGC GG A+++II+N GI T+ANYPY+AV G C AS V I GY VP +
Sbjct: 60 -NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCN 115
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL +AVA QP V+IDAS + FQ YSSG+F+G CGT+L+HGVT VGY A YW+
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQA-----NYWI 170
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
V+NSWG WGE+GYIRM R GLCGIA YPT
Sbjct: 171 VRNSWGRYWGEKGYIRMLR--VGGCGLCGIARLPYYPT 206
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 247 bits (630), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 149/218 (68%), Gaps = 12/218 (5%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWRK GAVTP+KNQG CGSCWAFS V+ E I Q+ TG LISLSEQ+LV C+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+HGC+GG A+++II N GI TEANYPY+AV G C A V +I GY+ VP +
Sbjct: 60 -NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPC---RAAKKVVRIDGYKGVPHCN 115
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL KAVA+QP V+IDAS FQ Y SG+F+G CGT+L+HGV VGY YW+
Sbjct: 116 ENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGY-----WKDYWI 170
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
V+NSWG WGE+GYIRMKR GLCGIA YPT
Sbjct: 171 VRNSWGRYWGEQGYIRMKR--VGGCGLCGIARLPYYPT 206
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P+ +DWR GAV IK+QG CG WAFSA+A EGI ++T+G LISLSEQEL+ C +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
GC+GG + D F+FII++ GI TE NYPY A DG C+ + I YE VP N+
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL AV QPV+V++DA+G AF+ Y+SG+FTG CGT +DH + VGYG T G YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYG-TEGGVDYWI 179
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
VKNSW T+WGEEGY+R+ R++ G CGIA SYP
Sbjct: 180 VKNSWDTTWGEEGYMRILRNV-GGAGTCGIATMPSYPV 216
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 191/321 (59%), Gaps = 22/321 (6%)
Query: 15 SLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAA---GNKPYKLSINEFAD 71
SL + +W + + ++Y EE +R +++ N++ IE N G + +++N F D
Sbjct: 3 SLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGD 61
Query: 72 QTNQEFKAFRNGY--RRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGS 129
T++EF+ NG R+P RKG F+ + P ++DWR+ G VTP+KNQG CGS
Sbjct: 62 MTSEEFRQVMNGLQNRKP-----RKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS 116
Query: 130 CWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGIT 189
WAFSA A EG TG+LISLSEQ LV C + GC GG M+ AF+++ N G+
Sbjct: 117 SWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLD 176
Query: 190 TEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVAN-QPVAVSIDASGSA 248
+E +YPY+A + +C K N VA G+ +P E+AL+KAVA P++V+IDA +
Sbjct: 177 SEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHES 234
Query: 249 FQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANGTKYWLVKNSWGTSWGEEGYIRMK 303
F FY G+ F DC +E +DHGV VGYG ++G KYWLVKNSWG WG GY++M
Sbjct: 235 FLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMA 294
Query: 304 RDIDAKEGLCGIAMDSSYPTA 324
+D + CGIA +SYPT
Sbjct: 295 KD---RRNHCGIASAASYPTV 312
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 191/321 (59%), Gaps = 22/321 (6%)
Query: 15 SLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAA---GNKPYKLSINEFAD 71
SL + +W + + ++Y EE +R +++ N++ IE N G + +++N F D
Sbjct: 7 SLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGD 65
Query: 72 QTNQEFKAFRNGY--RRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGS 129
T++EF+ NG+ R+P RKG F+ + P ++DWR+ G VTP+KNQG CGS
Sbjct: 66 MTSEEFRQVMNGFQNRKP-----RKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS 120
Query: 130 CWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGIT 189
WAFSA A EG TG+LISLSEQ LV C + GC GG M+ AF+++ N G+
Sbjct: 121 XWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 180
Query: 190 TEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVAN-QPVAVSIDASGSA 248
+E +YPY+A + +C K N VA G+ +P E+AL+KAVA P++V+IDA +
Sbjct: 181 SEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHES 238
Query: 249 FQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANGTKYWLVKNSWGTSWGEEGYIRMK 303
F FY G+ F DC +E +DHGV VGYG ++ KYWLVKNSWG WG GY++M
Sbjct: 239 FLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 298
Query: 304 RDIDAKEGLCGIAMDSSYPTA 324
+D + CGIA +SYPT
Sbjct: 299 KD---RRNHCGIASAASYPTV 316
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 145/216 (67%), Gaps = 8/216 (3%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ GAVTP+KNQ PCGSCWAFS VA EGI ++ TG+LISLSEQEL+ C+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
HGC+GG + ++++ N G+ TE YPY+ G C ++ I GY+ VPAN E
Sbjct: 60 SHGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDE 118
Query: 227 EALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLV 286
+L++A+ANQPV+V D+ G FQFY G++ G CGT DH VTAVGYG T Y L+
Sbjct: 119 ISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLLL 173
Query: 287 KNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
KNSWG +WGE+GYIR+KR +G CG+ S +P
Sbjct: 174 KNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFP 209
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 142/218 (65%), Gaps = 12/218 (5%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR GAV P+KNQG CGSCWAFS V E I Q+ TG LISLSEQ+LV C
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+HGC+GG + A+++II N GI TEANYPY+A G C A V +I G + VP +
Sbjct: 60 -NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPC---RAAKKVVRIDGCKGVPQCN 115
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E AL AVA+QP V+IDAS FQ Y G+FTG CGT+L+HGV VGY G YW+
Sbjct: 116 ENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGY-----GKDYWI 170
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
V+NSWG WGE+GY RMKR GLCGIA YPT
Sbjct: 171 VRNSWGRHWGEQGYTRMKR--VGGCGLCGIARLPFYPT 206
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 146/216 (67%), Gaps = 4/216 (1%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR GAVTP+KNQG CGS WAFS +A EGI ++ TG L+ LSEQELV CD
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+GC+GG + +++ N+G+ T YPYQA C T++ KI GY+ VP+N E
Sbjct: 60 SYGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 227 EALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLV 286
+ L A+ANQP++V ++A G FQ Y SGVF G CGT+LDH VTAVGYG T++G Y ++
Sbjct: 119 TSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYG-TSDGKNYIII 177
Query: 287 KNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
KNSWG +WGE+GY+R+KR +G CG+ S YP
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/268 (45%), Positives = 166/268 (61%), Gaps = 18/268 (6%)
Query: 65 SINEFADQTNQEFKAFRNGY--RRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIK 122
++N F D T++EF+ NG+ R+P RKG F+ + P ++DWR+ G VTP+K
Sbjct: 1 AMNAFGDMTSEEFRQVMNGFQNRKP-----RKGKVFQEPLFYEAPRSVDWREKGYVTPVK 55
Query: 123 NQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFI 182
NQG CGSCWAFSA A EG TG+LISLSEQ LV C + GC GG M+ AF+++
Sbjct: 56 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 115
Query: 183 IHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVAN-QPVAVS 241
N G+ +E +YPY+A + +C K N VA G+ +P E+AL+KAVA P++V+
Sbjct: 116 QDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVA 173
Query: 242 IDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANGTKYWLVKNSWGTSWGE 296
IDA +F FY G+ F DC +E +DHGV VGYG ++ KYWLVKNSWG WG
Sbjct: 174 IDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM 233
Query: 297 EGYIRMKRDIDAKEGLCGIAMDSSYPTA 324
GY++M +D + CGIA +SYPT
Sbjct: 234 GGYVKMAKD---RRNHCGIASAASYPTV 258
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 181/317 (57%), Gaps = 13/317 (4%)
Query: 12 QEASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLN---AAGNKPYKLSINE 68
++ +L W YGK YK E+ R I++ N++F+ N + G Y L +N
Sbjct: 4 KDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNH 63
Query: 69 FADQTNQEFKAFRNGYRRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCG 128
D T++E + + R P ++ ++K +P ++DWR+ G VT +K QG CG
Sbjct: 64 LGDMTSEEVMSLMSSLRVPSQW--QRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCG 121
Query: 129 SCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV-DHGCEGGEMEDAFKFIIHNDG 187
+ WAFSAV A E +L TGKL+SLS Q LV C T + GC GG M AF++II N G
Sbjct: 122 AAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKG 181
Query: 188 ITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVSIDASG 246
I ++A+YPY+A+D C + + A Y +P E+ L +AVAN+ PV+V +DA
Sbjct: 182 IDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARH 240
Query: 247 SAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRD 305
+F Y SGV + C ++HGV VGYG NG +YWLVKNSWG ++GEEGYIRM R+
Sbjct: 241 PSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARN 299
Query: 306 IDAKEGLCGIAMDSSYP 322
K CGIA SYP
Sbjct: 300 ---KGNHCGIASFPSYP 313
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 185/316 (58%), Gaps = 13/316 (4%)
Query: 13 EASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLN---AAGNKPYKLSINEF 69
E L E W + K Y N ++ R I++ N+++I N + G Y+L++N
Sbjct: 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHL 63
Query: 70 ADQTNQEFKAFRNGYRRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGS 129
D T++E G + P + T + E P ++D+RK G VTP+KNQG CGS
Sbjct: 64 GDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGS 123
Query: 130 CWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGIT 189
CWAFS+V A EG + TGKL++LS Q LV C + + GC GG M +AF+++ N GI
Sbjct: 124 CWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGID 181
Query: 190 TEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVSIDASGSA 248
+E YPY + +C N AK +GY +P +E+AL +AVA PV+V+IDAS ++
Sbjct: 182 SEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTS 240
Query: 249 FQFYSSGVFTGD-CGTE-LDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306
FQFYS GV+ + C ++ L+H V AVGYG G K+W++KNSWG +WG +GYI M R+
Sbjct: 241 FQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMARN- 298
Query: 307 DAKEGLCGIAMDSSYP 322
K CGIA +S+P
Sbjct: 299 --KNNACGIANLASFP 312
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 10/222 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
PA++DWRK GAVT +K+QG CG CWAF A A EGI +TTG+LIS+SEQ++V CDT
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
GG+ +DAF+++I N GI ++ANYPY VDGTC+ + A+I GY VP NS
Sbjct: 62 XX--XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIA--ARIDGYTNVP-NSS 116
Query: 227 EALLKAVANQPVAVSIDASGSAFQFYSS-GVFTG----DCGTELDHGVTAVGYGATANGT 281
ALL AVA QPV+V+I S ++FQ Y+ G+F G D +DH V VGYG+
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176
Query: 282 KYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
YW+VKNSWGT WG +GYI ++R+ + +G+C I SYPT
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 143/225 (63%), Gaps = 5/225 (2%)
Query: 102 NVI--DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELV 159
NV+ ++PA +DWR G VTP+K+Q CGSCWAFS A EG TGKL+SLSEQEL+
Sbjct: 1 NVLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 160 SCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYE 219
C + + C GGEM DAF++++ + GI +E YPY A D C + V KI G++
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEEC-RAQSCEKVVKILGFK 119
Query: 220 TVPANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATAN 279
VP SE A+ A+A PV+++I+A FQFY GVF CGT+LDHGV VGYG
Sbjct: 120 DVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKE 179
Query: 280 GTK-YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
K +W++KNSWGT WG +GY+ M +EG CG+ +D+S+P
Sbjct: 180 SKKDFWIMKNSWGTGWGRDGYMYMAMH-KGEEGQCGLLLDASFPV 223
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/218 (50%), Positives = 141/218 (64%), Gaps = 4/218 (1%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWRK GAVTP+++QG CGSCWAFSAVA EGI ++ TGKL+ LSEQELV C+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
HGC+GG A +++ N GI + YPY+A GTC + K G V N+
Sbjct: 60 -SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E LL A+A QPV+V +++ G FQ Y G+F G CGT++DH VTAVGYG + L
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-L 176
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT+WGE+GYIR+KR G+CG+ S YPT
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 141/218 (64%), Gaps = 4/218 (1%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWRK GAVTP+++QG CGSCWAFSAVA EGI ++ TGKL+ LSEQELV C+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
HGC+GG A +++ N GI + YPY+A GTC + K G V N+
Sbjct: 60 -SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E LL A+A QPV+V +++ G FQ Y G+F G CGT+++H VTAVGYG + L
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-L 176
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT+WGE+GYIR+KR G+CG+ S YPT
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 145/223 (65%), Gaps = 10/223 (4%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWRK G VTP+KNQ CGSCWAFSA A EG TGKL+SLSEQ LV C
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+ GC GG M AF+++ N G+ +E +YPY AVD C E S VA+ G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS-VAQDTGFTVVAPGK 119
Query: 226 EEALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGY---GATAN 279
E+AL+KAVA P++V++DA S+FQFY SG+ F DC ++ LDHGV VGY GA ++
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 280 GTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
+KYWLVKNSWG WG GY+++ +D K CGIA +SYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 219
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 144/223 (64%), Gaps = 10/223 (4%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWRK G VTP+KNQ CGS WAFSA A EG TGKL+SLSEQ LV C
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+ GC GG M AF+++ N G+ +E +YPY AVD C E S VA+ G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS-VAQDTGFTVVAPGK 119
Query: 226 EEALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGY---GATAN 279
E+AL+KAVA P++V++DA S+FQFY SG+ F DC ++ LDHGV VGY GA ++
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 280 GTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
+KYWLVKNSWG WG GY+++ +D K CGIA +SYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 219
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 184/323 (56%), Gaps = 24/323 (7%)
Query: 11 LQEASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAA---GNKPYKLSIN 67
L ++ E+ Q+ + K Y +P E+ +R IFKDNV I NA G Y ++N
Sbjct: 18 LPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMN 77
Query: 68 EFADQTNQEFKAFRN-----GYRRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIK 122
+F D + +EF A+ N + P+ L +S K + A++DWR N AV+ +K
Sbjct: 78 QFGDMSKEEFLAYVNRGKAQKPKHPENLRMPYVSSKK-----PLAASVDWRSN-AVSEVK 131
Query: 123 NQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFI 182
+QG CGS W+FS A EG L G+L SLSEQ L+ C +S + GC+GG M+ AF +
Sbjct: 132 DQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY- 190
Query: 183 IHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVS 241
IH+ GI +E+ YPY+A C + + + V + GY +P+ E +L AV PVAV+
Sbjct: 191 IHDYGIMSESAYPYEAQGDYC-RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVA 249
Query: 242 IDASGSAFQFYSSGVFTGD-CG-TELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGY 299
IDA+ QFYS G+F C ++L+HGV VGYG+ NG YW++KNSWG+ WGE GY
Sbjct: 250 IDAT-DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGY 307
Query: 300 IRMKRDIDAKEGLCGIAMDSSYP 322
R R+ CGIA +SYP
Sbjct: 308 WRQVRNYGNN---CGIATAASYP 327
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 8/218 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR+ GAVTP+KNQG CGSCWAFSAV EGI ++ TG L SEQEL+ CD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC GG A + + GI YPY+ V C + + AK G V +
Sbjct: 60 -SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E ALL ++ANQPV+V ++A+G FQ Y G+F G CG ++DH V AVGYG Y L
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YIL 172
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT WGE GYIR+KR G+CG+ S YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 129/218 (59%), Gaps = 8/218 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR+ GAVTP+KNQG CGSCWAFSAV EGI ++ TG L SEQEL+ CD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC GG A + + GI YPY+ V C + + AK G V +
Sbjct: 60 -SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
+ ALL ++ANQPV+V + A+G FQ Y G+F G CG ++DH V AVGYG Y L
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YIL 172
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT WGE GYIR+KR G+CG+ S YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 128/217 (58%), Gaps = 8/217 (3%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P +DWR+ GAVTP+KNQG CGSCWAFSAV EGI ++ TG L SEQEL+ CD
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+GC GG A + + GI YPY+ V C + + AK G V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 227 EALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLV 286
ALL ++ANQPV+V + A+G FQ Y G+F G CG ++DH V AVGYG Y L+
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YILI 173
Query: 287 KNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
KNSWGT WGE GYIR+KR G+CG+ S YP
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 129/218 (59%), Gaps = 8/218 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR+ GAVTP+KNQG CGS WAFSAV EGI ++ TG L SEQEL+ CD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC GG A + + GI YPY+ V C + + AK G V +
Sbjct: 60 -SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E ALL ++ANQPV+V ++A+G FQ Y G+F G CG ++DH V AVGYG Y L
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YIL 172
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT WGE GYIR+KR G+CG+ S YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 129/218 (59%), Gaps = 8/218 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR+ GAVTP+KNQG CGS WAFSAV EGI ++ TG L SEQEL+ CD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC GG A + + GI YPY+ V C + + AK G V +
Sbjct: 60 -SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E ALL ++ANQPV+V ++A+G FQ Y G+F G CG ++DH V AVGYG Y L
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YIL 172
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT WGE GYIR+KR G+CG+ S YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 144/226 (63%), Gaps = 11/226 (4%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTS 164
+ P ++DWR+ G VTP+KNQG CGSCWAFSA A EG TG+LISLSEQ LV C
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 165 GVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-K 118
Query: 225 SEEALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATA 278
E+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG +
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 279 NGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPTA 324
+ KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 221
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGSCWAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANG 280
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG ++
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 143/224 (63%), Gaps = 11/224 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGSCWAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANG 280
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG ++
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPTA 324
KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 128/218 (58%), Gaps = 8/218 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P +DWR+ GAVTP+KNQG CGS WAFSAV EGI ++ TG L SEQEL+ CD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC GG A + + GI YPY+ V C + + AK G V +
Sbjct: 60 -SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
+ ALL ++ANQPV+V + A+G FQ Y G+F G CG ++DH V AVGYG Y L
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YIL 172
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT WGE GYIR+KR G+CG+ S YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 175/311 (56%), Gaps = 17/311 (5%)
Query: 21 EQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNA---AGNKPYKLSINEFADQTNQEF 77
QW Y K Y +++ +R I++ NV+ I+ N G Y L +N+F D T +EF
Sbjct: 6 HQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 64
Query: 78 KA-FRNGYRRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAV 136
KA + R + S G ++ N VP +DWR++G VT +K+QG CGS WAFS
Sbjct: 65 KAKYLTEMSRASDILSH-GVPYEANNRA-VPDKIDWRESGYVTEVKDQGNCGSGWAFSTT 122
Query: 137 AATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPY 196
EG IS SEQ+LV C ++GC GG ME+A+++ + G+ TE++YPY
Sbjct: 123 GTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETESSYPY 181
Query: 197 QAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAV-ANQPVAVSIDASGSAFQFYSSG 255
AV+G C + N+ VAK+ G+ TV + SE L V A P AV++D S F Y SG
Sbjct: 182 TAVEGQC-RYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE-SDFMMYRSG 239
Query: 256 VFTGDCGTEL--DHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLC 313
++ + L +H V AVGYG T GT YW+VKNSWG SWGE GYIRM R+ + +C
Sbjct: 240 IYQSQTCSPLRVNHAVLAVGYG-TQGGTDYWIVKNSWGLSWGERGYIRMVRN---RGNMC 295
Query: 314 GIAMDSSYPTA 324
GIA +S P
Sbjct: 296 GIASLASLPMV 306
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++D+RK G VTP+KNQG CGSCWAFS+V A EG + TGKL++LS Q LV C +
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M +AF+++ N GI +E YPY D +C N AK +GY +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNE 118
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTG-DCGTE-LDHGVTAVGYGATANGTKY 283
+AL +AVA PV+V+IDAS ++FQFYS GV+ +C ++ L+H V AVGYG G K+
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYG-IQKGNKH 177
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
W++KNSWG SWG +GYI M R+ K CGIA +S+P
Sbjct: 178 WIIKNSWGESWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 143/225 (63%), Gaps = 11/225 (4%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTS 164
+ P ++DWR+ G VTP+KNQG CGS WAFSA A EG TG+LISLSEQ LV C
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 165 GVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-K 118
Query: 225 SEEALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATA 278
E+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG +
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 178
Query: 279 NGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+ KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 220
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 142/220 (64%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A A + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSAYRAATCRKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GE+GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 140/218 (64%), Gaps = 8/218 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ GAVTP++NQG CGSCW FS+VAA EGI ++ TG+L+SLSEQEL+ C+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC GG A ++ + N GI YPY+ V C + K G VP N+
Sbjct: 60 -SYGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E+AL++ +A QPV++ ++A G AFQ Y G+F G CGT +DH V AVGY G Y L
Sbjct: 118 EQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY-----GNDYIL 172
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+KNSWGT WGE GYIR+KR +G CG+ DS +PT
Sbjct: 173 IKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 142/223 (63%), Gaps = 11/223 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGS WAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANG 280
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG ++
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 142/224 (63%), Gaps = 11/224 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGS WAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANG 280
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG ++
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPTA 324
KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 142/223 (63%), Gaps = 11/223 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGS WAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG---ATANG 280
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG ++
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 122
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 181
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 182 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCRKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GE+GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 179
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 179
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++D+RK G VTP+KNQG CGSCWAFS+V A EG + TGKL++LS Q LV C +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 58
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M +AF+++ N GI +E YPY + +C N AK +GY +P +E
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNE 117
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTGD-CGTE-LDHGVTAVGYGATANGTKY 283
+AL +AVA PV+V+IDAS ++FQFYS GV+ + C ++ L+H V AVGYG G K+
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKH 176
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
W++KNSWG +WG +GYI M R+ K CGIA +S+P
Sbjct: 177 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 212
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++D+RK G VTP+KNQG CGSCWAFS+V A EG + TGKL++LS Q LV C +
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M +AF+++ N GI +E YPY + +C N AK +GY +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNE 118
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTGD-CGTE-LDHGVTAVGYGATANGTKY 283
+AL +AVA PV+V+IDAS ++FQFYS GV+ + C ++ L+H V AVGYG G K+
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKH 177
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
W++KNSWG +WG +GYI M R+ K CGIA +S+P
Sbjct: 178 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 144/219 (65%), Gaps = 10/219 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++D+RK G VTP+KNQG CGSCWAFS+V A EG + TG L++L+ Q LV C +
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M +AF+++ N GI +E YPY D +C N AK +GY +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNE 118
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTG-DCGTE-LDHGVTAVGYGATANGTKY 283
AL +AVA PV+V+IDAS ++FQFYS+GV+ +C ++ L+H V AVGYG A G K+
Sbjct: 119 AALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQA-GNKH 177
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
W++KNSWG SWG GYI M R+ K CGIA +S+P
Sbjct: 178 WIIKNSWGESWGNAGYILMARN---KNNACGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 145/219 (66%), Gaps = 10/219 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++D+RK G VTP+KNQG CGSCWAFS+V A EG + TGKL++LS Q LV C +
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M +AF+++ N GI +E YPY + +C N AK +GY +P +E
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNE 120
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTGD-CGTE-LDHGVTAVGYGATANGTKY 283
+AL +AVA PV+V+IDAS ++FQFYS GV+ + C ++ L+H V AVGYG G K+
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKH 179
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
W++KNSWG +WG +GYI M R+ K CGIA +S+P
Sbjct: 180 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 140/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+CWAFSAV A E +L TGKL++LS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 146/219 (66%), Gaps = 10/219 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++D+R+ G VTP+KNQG CGSCWAFS+V A EG + TGKL++LS Q LV C +
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M +AF+++ N GI +E YPY + +C N AK +GY +P +E
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNE 118
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTGD-CGTE-LDHGVTAVGYGATANGTKY 283
+AL +AVA PV+V+IDAS ++FQFYS GV+ + C ++ L+H V AVGYG + G K+
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGES-KGNKH 177
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
W++KNSWG +WG GYI+M R+ K CGIA +S+P
Sbjct: 178 WIIKNSWGENWGMGGYIKMARN---KNNACGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 144/217 (66%), Gaps = 10/217 (4%)
Query: 109 TMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDH 168
++D+RK G VTP+KNQG CGSCWAFS+V A EG + TGKL++LS Q LV C + +
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--ND 59
Query: 169 GCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEA 228
GC GG M +AF+++ N GI +E YPY + +C N AK +GY +P +E+A
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 118
Query: 229 LLKAVAN-QPVAVSIDASGSAFQFYSSGVFTGD-CGTE-LDHGVTAVGYGATANGTKYWL 285
L +AVA PV+V+IDAS ++FQFYS GV+ + C ++ L+H V AVGYG G K+W+
Sbjct: 119 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWI 177
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
+KNSWG +WG +GYI M R+ K CGIA +S+P
Sbjct: 178 IKNSWGENWGNKGYILMARN---KNNACGIANLASFP 211
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 4/217 (1%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR GAVTP+K+QG C SCWAFS VA EGI ++ TG L+ LSEQELV CD
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+GC G + +++ N GI A YPY A TC K G V +N+
Sbjct: 60 -SYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNN 117
Query: 226 EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWL 285
E +LL A+A+QPV+V ++++G FQ Y G+F G CGT++DH VTAVGYG + L
Sbjct: 118 EGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI-L 176
Query: 286 VKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
+KNSWG WGE GYIR++R G+CG+ S YP
Sbjct: 177 IKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYP 213
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 172/327 (52%), Gaps = 23/327 (7%)
Query: 11 LQEASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNA---AGNKPYKLSIN 67
L ++EK E + + Y + Y N +E+ R +IF+ +E E N G Y L +N
Sbjct: 13 LPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVN 72
Query: 68 EFADQTNQEFKAFRNGYRRP-----DGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIK 122
F D T +E KA+ +G P +G+ + + PA+ DWR G V+P+K
Sbjct: 73 LFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVK 132
Query: 123 NQGPCGSCWAFSAVAATEGITQLTTGKLI--SLSEQELVSCDTSGVDHGCEGGEMEDAFK 180
NQG CGS WAFS+ A E ++ G S+SEQ+LV C + + GC GG M DAF
Sbjct: 133 NQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNAL--GCSGGWMNDAFT 190
Query: 181 FIIHNDGITTEANYPYQAVDGTCN-KTNEASHVAKIKGYETVPANSEEALLKAVANQ-PV 238
++ N GI +E YPY+ DG C+ N+ + A++ GY + E L VA + PV
Sbjct: 191 YVAQNGGIDSEGAYPYEMADGNCHYDPNQVA--ARLSGYVYLSGPDENMLADMVATKGPV 248
Query: 239 AVSIDASGSAFQFYSSGVFTGD-CGT-ELDHGVTAVGYGATANGTKYWLVKNSWGTSWGE 296
AV+ DA F YS GV+ C T + H V VGYG NG YWLVKNSWG WG
Sbjct: 249 AVAFDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGL 306
Query: 297 EGYIRMKRDIDAKEGLCGIAMDSSYPT 323
+GY ++ R+ + CGIA +S PT
Sbjct: 307 DGYFKIARNANNH---CGIAGVASVPT 330
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+ WAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+ WAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 121
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 180
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 181 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+ WAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 179
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
+P ++DWR+ G VT +K QG CG+ WAFSAV A E +L TGKL+SLS Q LV C T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 166 V-DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPAN 224
+ GC GG M AF++II N GI ++A+YPY+A+D C + + A Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKC-QYDSKYRAATCSKYTELPYG 119
Query: 225 SEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV-FTGDCGTELDHGVTAVGYGATANGTK 282
E+ L +AVAN+ PV+V +DA +F Y SGV + C ++HGV VGYG NG +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKE 178
Query: 283 YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YWLVKNSWG ++GEEGYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CG+ +AFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDVGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVF--TGDCGTELDHGVTAVGYGATANGTKY 283
+AL+KAVA P++V+IDA +F FY G++ + + L+H + VGYG +N KY
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
WLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 216
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 107 PATMDWRKNG-AVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSG 165
P +MDWRK G V+P+KNQG CGSCW FS A E + TGK++SL+EQ+LV C +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 166 VDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANS 225
+HGC+GG AF++I +N GI E YPY+ D C K +A +K + N
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHC-KFQPDKAIAFVKDVANITMND 120
Query: 226 EEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTG-DCGT---ELDHGVTAVGYGATANG 280
EEA+++AVA PV+ + + + F Y G+++ C +++H V AVGYG NG
Sbjct: 121 EEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG-EENG 178
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
YW+VKNSWG WG GY ++R + +CG+A +SYP
Sbjct: 179 IPYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYP 216
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 128/202 (63%), Gaps = 9/202 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
PA +DWR+ GAVTP+K+QG CGSCWAFS + EG Q+ L+SLSEQ LVSCDT +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT--I 59
Query: 167 DHGCEGGEMEDAFKFIIHNDG--ITTEANYPYQAVDGTCNKTNEASHV--AKIKGYETVP 222
D GC GG M++AF +I++++G + TEA+YPY + +G + H A I + +P
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLP 119
Query: 223 ANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTK 282
+ + N P+A+++DA ++F Y+ G+ T +LDHGV VGY +N
Sbjct: 120 QDEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGYNDASN-PP 176
Query: 283 YWLVKNSWGTSWGEEGYIRMKR 304
YW++KNSW WGE+GYIR+++
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEK 198
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 135/230 (58%), Gaps = 18/230 (7%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSC-DT 163
D P + DW K G +T +K QG CGS WAFSA A E + TG L+SLSEQEL+ C D
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 164 SGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGY----- 218
S GC G +F++++ + GI +EA+YPY+A DG C K NE I Y
Sbjct: 61 S---EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKC-KANEIQDKVTIDNYGVQIL 116
Query: 219 --ETVPANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFT-GDCGTE--LDHGVTAVG 273
E+ + +E +L V QP++VSIDA F FYS G++ G+C + ++H V VG
Sbjct: 117 SNESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVG 174
Query: 274 YGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
YG + +G YW+ KNSWG WG +GYIR++R+ G+CG+ +SYP
Sbjct: 175 YG-SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 121/202 (59%), Gaps = 9/202 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
PA +DWR GAVT +K+QG CGSCWAFSA+ E L L +LSEQ LVSCD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 167 DHGCEGGEMEDAFKFII--HNDGITTEANYPYQAVDGTCNKTNEASHV--AKIKGYETVP 222
D GC GG M +AF++I+ +N + TE +YPY + +G + H A I G+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 223 ANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTK 282
+ + N PVAV++DA S++ Y+ GV T +LDHGV VGY +A
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVP 176
Query: 283 YWLVKNSWGTSWGEEGYIRMKR 304
YW++KNSW T WGEEGYIR+ +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAK 198
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 120/202 (59%), Gaps = 9/202 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
PA +DWR GAVT +K+QG CGSCWAFSA+ E L L +LSEQ LVSCD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 167 DHGCEGGEMEDAFKFII--HNDGITTEANYPYQAVDGTCNKTNEASHV--AKIKGYETVP 222
D GC GG M +AF++I+ +N + TE +YPY + +G + H A I G+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 223 ANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTK 282
+ + N PVAV++DA S++ Y+ GV T LDHGV VGY +A
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEALDHGVLLVGYNDSA-AVP 176
Query: 283 YWLVKNSWGTSWGEEGYIRMKR 304
YW++KNSW T WGEEGYIR+ +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAK 198
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 9/202 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
PA +DWR GAVT +K+QG CGSCWAFSA+ E L L +L+EQ LVSCD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 167 DHGCEGGEMEDAFKFII--HNDGITTEANYPYQAVDGTCNKTNEASHV--AKIKGYETVP 222
D GC GG M +AF++I+ +N + TE +YPY + +G + H A I G+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 223 ANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTK 282
+ + N PVAV++DA S++ Y+ GV T +LDHGV VGY A
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGA-AVP 176
Query: 283 YWLVKNSWGTSWGEEGYIRMKR 304
YW++KNSW T WGEEGYIR+ +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAK 198
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 9/202 (4%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
PA +DWR GAVT +K+QG CGSCWAFSA+ E L L +L+EQ LVSCD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 167 DHGCEGGEMEDAFKFII--HNDGITTEANYPYQAVDGTCNKTNEASHV--AKIKGYETVP 222
D GC GG M +AF++I+ +N + TE +YPY + +G + H A I G+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 223 ANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTK 282
+ + N PVAV++DA S++ Y+ GV T +LDHGV VGY A
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGA-AVP 176
Query: 283 YWLVKNSWGTSWGEEGYIRMKR 304
YW++KNSW T WGEEGYIR+ +
Sbjct: 177 YWIIKNSWTTQWGEEGYIRIAK 198
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 112/172 (65%), Gaps = 5/172 (2%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGSCWAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG 275
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 125/224 (55%), Gaps = 14/224 (6%)
Query: 108 ATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVD 167
A DWR + VTP+K+Q CGSCWAFS++ + E + KLI+LSEQELV C S +
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC--SFKN 77
Query: 168 HGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEE 227
+GC GG + +AF+ +I GI + +YPY + + + IK Y +VP N +
Sbjct: 78 YGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLK 137
Query: 228 ALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGA-------TANG 280
L+ + P+++S+ A F FY G+F G+CG +L+H V VG+G T G
Sbjct: 138 EALRFLG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKG 194
Query: 281 TK--YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
K Y+++KNSWG WGE G+I ++ D CG+ D+ P
Sbjct: 195 EKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP 238
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P ++DWR+ G VTP+KNQG CGS WAFSA A EG TG+LISLSEQ LV C
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
+ GC GG M+ AF+++ N G+ +E +YPY+A + +C K N VA G+ +P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGV-FTGDCGTE-LDHGVTAVGYG 275
+AL+KAVA P++V+IDA +F FY G+ F DC +E +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 14/224 (6%)
Query: 108 ATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVD 167
A DWR + VTP+K+Q CGS WAFS++ + E + KLI+LSEQELV C S +
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDC--SFKN 76
Query: 168 HGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEE 227
+GC GG + +AF+ +I GI + +YPY + + + IK Y +VP N +
Sbjct: 77 YGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLK 136
Query: 228 ALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGA-------TANG 280
L+ + P+++S+ A F FY G+F G+CG +L+H V VG+G T G
Sbjct: 137 EALRFLG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKG 193
Query: 281 TK--YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
K Y+++KNSWG WGE G+I ++ D CG+ D+ P
Sbjct: 194 EKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP 237
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 16/222 (7%)
Query: 111 DWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGC 170
DWR +G VTP+K+Q CGSCWAFS+V + E + L SEQELV C ++GC
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK--NNGC 82
Query: 171 EGGEMEDAFKFIIHNDGITTEANYPYQA-VDGTCNKTNEASHVAKIKGYETVPANSEEAL 229
GG + +AF +I G+ ++ +YPY + + TCN + IK Y ++P + +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCN-LKRCNERYTIKSYVSIPDDKFKEA 141
Query: 230 LKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGA-------TANGTK 282
L+ + P+++SI AS F FY G + G+CG +H V VGYG T K
Sbjct: 142 LRYLG--PISISIAASDD-FAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEK 198
Query: 283 --YWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
Y+++KNSWG+ WGE GYI ++ D + + C I ++ P
Sbjct: 199 FYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVP 240
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 148/307 (48%), Gaps = 23/307 (7%)
Query: 21 EQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAF 80
E++ + K Y E++E + F ++V++++S A N LS++EF ++ +AF
Sbjct: 9 EEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMSAEAF 68
Query: 81 RNGYRRPDGLTSRKGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATE 140
+ + D S + PA +D R+ VTPI+ QG CGS WAFS VAATE
Sbjct: 69 EHLKTQFDLNAETNACSIN----GNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATE 124
Query: 141 GITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVD 200
+ + L+EQELV C + HGC G + ++I HN G+ E+ Y Y A +
Sbjct: 125 SAYLAYRDQSLDLAEQELVDCASQ---HGCHGDTIPRGIEYIQHN-GVVQESYYRYVARE 180
Query: 201 GTCNKTNEASHVAKIKGY-ETVPANS---EEALLKAVANQPVAVSIDASGSAFQFYSSGV 256
+C + N + I Y + P N+ EAL + + V + I + + +
Sbjct: 181 QSCRRPN--AQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI 238
Query: 257 FTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGI 315
D G + + H V VGY + A G YW+V+NSW T+WG+ GY +ID +
Sbjct: 239 IQRDNGYQPNYHAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAANID-------L 290
Query: 316 AMDSSYP 322
M YP
Sbjct: 291 MMIEEYP 297
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 106/203 (52%), Gaps = 12/203 (5%)
Query: 102 NVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSC 161
N ++VP+ +D R VTPI+ QG CGSCWAFS VAATE + LSEQELV C
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC 66
Query: 162 DTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETV 221
+ HGC G + ++I N G+ E +YPY A + C + N + I Y +
Sbjct: 67 ASQ---HGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRCRRPNSQHY--GISNYCQI 120
Query: 222 PANSEEALLKAVANQPVAVSIDA---SGSAFQFYS-SGVFTGDCGTELD-HGVTAVGYGA 276
+ + +A+ A+++ AFQ Y + D G + + H V VGYG+
Sbjct: 121 YPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGS 180
Query: 277 TANGTKYWLVKNSWGTSWGEEGY 299
T G YW+V+NSW T+WG+ GY
Sbjct: 181 T-QGDDYWIVRNSWDTTWGDSGY 202
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTS 164
+ PA +D R+ VTPI+ QG CGSCWAFS VAATE + + L+EQELV C +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 165 GVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGY-ETVPA 223
HGC G + ++I HN G+ E+ Y Y A + +C + N + I Y + P
Sbjct: 69 ---HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCRRPN--AQRFGISNYCQIYPP 122
Query: 224 NS---EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATAN 279
N+ EAL + + V + I + + + D G + + H V VGY + A
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQ 181
Query: 280 GTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
G YW+V+NSW T+WG+ GY +ID + M YP
Sbjct: 182 GVDYWIVRNSWDTNWGDNGYGYFAANID-------LMMIEEYP 217
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 111/223 (49%), Gaps = 19/223 (8%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTS 164
+ PA +D R+ VTPI+ QG CGSCWAFS VAATE + + L+EQELV C +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ 68
Query: 165 GVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGY-ETVPA 223
HGC G + ++I HN G+ E+ Y Y A + +C + N + I Y + P
Sbjct: 69 ---HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCRRPN--AQRFGISNYCQIYPP 122
Query: 224 NS---EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATAN 279
N EAL + + V + I + + + D G + + H V VGY + A
Sbjct: 123 NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQ 181
Query: 280 GTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
G YW+V+NSW T+WG+ GY +ID + M YP
Sbjct: 182 GVDYWIVRNSWDTNWGDNGYGYFAANID-------LMMIEEYP 217
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 116/214 (54%), Gaps = 16/214 (7%)
Query: 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV 166
P DWR GAVT +K+QG CGSCWAFS EG L G L+SLSEQEL+ CD +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK--M 59
Query: 167 DHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSE 226
D C GG +A+ I + G+ TE +Y YQ +C + E + V E + +E
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVEL--SQNE 117
Query: 227 EALLKAVANQ-PVAVSIDASGSAFQFYSSGV---FTGDCGTEL-DHGVTAVGYGATANGT 281
+ L +A + P++V+I+A G QFY G+ C L DH V VGYG ++
Sbjct: 118 QKLAAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD-V 174
Query: 282 KYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGI 315
+W +KNSWGT WGE+GY + R G CG+
Sbjct: 175 PFWAIKNSWGTDWGEKGYYYLHRG----SGACGV 204
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 48/307 (15%)
Query: 32 KNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYRR----- 86
KN +EK R++K + F++++NA + E+ T + G+ R
Sbjct: 133 KNSQEKYSN-RLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRP 191
Query: 87 -PDGLTSRKGTSFKYENVIDVPATMDWRKNGA---VTPIKNQGPCGSCWAFSAVAATEGI 142
P LT+ + ++ +P + DWR V+P++NQ CGSC++F+++ E
Sbjct: 192 KPAPLTAEIQ-----QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEAR 246
Query: 143 TQLTT--GKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFII-----HNDGITTEANYP 195
++ T + LS QE+VSC S GCEGG F ++I + G+ EA +P
Sbjct: 247 IRILTNNSQTPILSPQEVVSC--SQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFP 299
Query: 196 YQAVDGTCNKTNE-----ASHVAKIKGYETVPANSEEALLKA--VANQPVAVSIDASGSA 248
Y D C + +S + G+ EAL+K V + P+AV+ +
Sbjct: 300 YTGTDSPCKMKEDCFRYYSSEYHYVGGFY---GGCNEALMKLELVHHGPMAVAFEVYDD- 355
Query: 249 FQFYSSGVF--TG-----DCGTELDHGVTAVGYGA-TANGTKYWLVKNSWGTSWGEEGYI 300
F Y G++ TG + +H V VGYG +A+G YW+VKNSWGT WGE GY
Sbjct: 356 FLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYF 415
Query: 301 RMKRDID 307
R++R D
Sbjct: 416 RIRRGTD 422
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 111/223 (49%), Gaps = 19/223 (8%)
Query: 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTS 164
+ PA +D R+ VTPI+ QG CGS WAFS VAATE + + L+EQELV C +
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 165 GVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGY-ETVPA 223
HGC G + ++I HN G+ E+ Y Y A + +C + N + I Y + P
Sbjct: 69 ---HGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSCRRPN--AQRFGISNYCQIYPP 122
Query: 224 NS---EEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATAN 279
N+ EAL + + V + I + + + D G + + H V VGY + A
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQ 181
Query: 280 GTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322
G YW+V+NSW T+WG+ GY +ID + M YP
Sbjct: 182 GVDYWIVRNSWDTNWGDNGYGYFAANID-------LMMIEEYP 217
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 46/296 (15%)
Query: 42 RIFKDNVEFIESLN-------AAGNKPY-KLSINEFADQTNQEFKAFRNGYRRPDGLTSR 93
R++ + F++++N A + Y KLSI + ++ + R +P +T
Sbjct: 142 RLYSHHHNFVKAINSVQKSWTATTYRRYEKLSIRDLIRRSGHSGRILRP---KPAPITDE 198
Query: 94 KGTSFKYENVIDVPATMDWRKN---GAVTPIKNQGPCGSCWAFSAVAATEGITQLTT--G 148
+ ++ +P + DWR V+P++NQ CGSC++F+++ E ++ T
Sbjct: 199 IQ-----QQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNS 253
Query: 149 KLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFII-----HNDGITTEANYPYQAVDGTC 203
+ LS QE+VSC S GC+GG F ++I + G+ E +PY A D C
Sbjct: 254 QTPILSPQEVVSC--SPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPC 306
Query: 204 NKTNEA--SHVAKIKGYETVPANSEEALLKA--VANQPVAVSIDASGSAFQFYSSGVF-- 257
+ ++ EAL+K V + P+AV+ + F Y SG++
Sbjct: 307 KPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDD-FLHYHSGIYHH 365
Query: 258 TGDCGT----EL-DHGVTAVGYGA-TANGTKYWLVKNSWGTSWGEEGYIRMKRDID 307
TG EL +H V VGYG G YW+VKNSWG+ WGE GY R++R D
Sbjct: 366 TGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTD 421
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 118/255 (46%), Gaps = 38/255 (14%)
Query: 80 FRNG---YR--RPDGLTSRKGTSF----KYENVIDVPATMDWRKNGAV---TPIKNQGP- 126
FR G YR R DGL T++ +Y + D+P + DWR V + +NQ
Sbjct: 1 FRRGQTCYRPLRGDGLAPLGRTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIP 60
Query: 127 --CGSCWAF---SAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKF 181
CGSCWA SA+A I + LS Q ++ C +G CEGG + +
Sbjct: 61 QYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAG---SCEGGNDLSVWDY 117
Query: 182 IIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVP-------------ANSEEA 228
H GI E YQA D C+K N+ + K + + E+
Sbjct: 118 A-HQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKM 176
Query: 229 LLKAVANQPVAVSIDASGSAFQFYSSGVFTG-DCGTELDHGVTAVGYGATANGTKYWLVK 287
+ + AN P++ I A+ Y+ G++ T ++H V+ G+G ++GT+YW+V+
Sbjct: 177 MAEIYANGPISCGIMAT-ERLANYTGGIYAEYQDTTYINHVVSVAGWG-ISDGTEYWIVR 234
Query: 288 NSWGTSWGEEGYIRM 302
NSWG WGE G++R+
Sbjct: 235 NSWGEPWGERGWLRI 249
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 46/251 (18%)
Query: 104 IDVPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISL--SEQE 157
+ +PA+ D W + + I++QG CGSCWAF AV A + T +S+ S ++
Sbjct: 62 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 121
Query: 158 LVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT-- 202
L++C S GC GG +A+ F G+ + Y PY V+G+
Sbjct: 122 LLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRP 180
Query: 203 ----------CNKTNEASHVAKIK-----GYETVP-ANSEEALLKAV-ANQPVAVSIDAS 245
C+K E + K GY + +NSE+ ++ + N PV +
Sbjct: 181 PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 240
Query: 246 GSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
S F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 241 -SDFLLYKSGVYQHVTGEMMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILR 298
Query: 305 DIDAKEGLCGI 315
D CGI
Sbjct: 299 GQDH----CGI 305
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 46/251 (18%)
Query: 104 IDVPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISL--SEQE 157
+ +PA+ D W + + I++QG CGSCWAF AV A + T +S+ S ++
Sbjct: 1 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 60
Query: 158 LVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT-- 202
L++C S GC GG +A+ F G+ + Y PY V+G+
Sbjct: 61 LLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRP 119
Query: 203 ----------CNKTNEASHVAKIK-----GYETVP-ANSEEALLKAV-ANQPVAVSIDAS 245
C+K E + K GY + +NSE+ ++ + N PV +
Sbjct: 120 PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 179
Query: 246 GSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
S F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 180 -SDFLLYKSGVYQHVTGEMMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILR 237
Query: 305 DIDAKEGLCGI 315
D CGI
Sbjct: 238 GQDH----CGI 244
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISL--SEQELV 159
+PA+ D W + + I++QG CGSCWAF AV A + T +S+ S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 160 SCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT---- 202
+C S GC GG +A+ F G+ + Y PY V+G+
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 203 --------CNKTNEASHVAKIK-----GYETVP-ANSEEALLKAV-ANQPVAVSIDASGS 247
C+K E + K GY + +NSE+ ++ + N PV + S
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 179
Query: 248 AFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306
F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 307 DAKEGLCGI 315
D CGI
Sbjct: 239 DH----CGI 243
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISL--SEQELV 159
+PA+ D W + + I++QG CGSCWAF AV A + T +S+ S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 160 SCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT---- 202
+C S GC GG +A+ F G+ + Y PY V+G+
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 203 --------CNKTNEASHVAKIK-----GYETVP-ANSEEALLKAV-ANQPVAVSIDASGS 247
C+K E + K GY + +NSE+ ++ + N PV + S
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 178
Query: 248 AFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306
F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 179 DFLLYKSGVYQHVTGEMMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 307 DAKEGLCGI 315
D CGI
Sbjct: 238 DH----CGI 242
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 46/251 (18%)
Query: 104 IDVPATMD----WRKNGAVTPIKNQGPCGSCWAFSAV-AATEGITQLTTGKL-ISLSEQE 157
I++P + D W + I++QG CGSCWAF AV A ++ I T G++ + +S ++
Sbjct: 5 INLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAED 64
Query: 158 LVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT-- 202
L++C GC GG A+ F G+ + Y PY V+G
Sbjct: 65 LLTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 123
Query: 203 ----------CNKTNEASHVAKIK-----GYET--VPANSEEALLKAVANQPVAVSIDAS 245
CNK EA + K GY + V + +E + + N PV +
Sbjct: 124 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 183
Query: 246 GSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
S F Y SGV+ + G + H + +G+G NG YWLV NSW WG+ G+ ++ R
Sbjct: 184 -SDFLTYKSGVYKHEAGDVMGGHAIRILGWG-IENGVPYWLVANSWNADWGDNGFFKILR 241
Query: 305 DIDAKEGLCGI 315
E CGI
Sbjct: 242 ----GENHCGI 248
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 106 VPATMDWRKNGAV---TPIKNQGP---CGSCWAF---SAVAATEGITQLTTGKLISLSEQ 156
+P + DWR V + +NQ CGSCWA SA+A I + LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 157 ELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIK 216
++ C +G CEGG + + H GI E YQA D C+K N+ + K
Sbjct: 61 NVIDCGNAG---SCEGGNDLSVWDYA-HQHGIPDETCNNYQAKDQECDKFNQCGTCNEFK 116
Query: 217 GYETVP-------------ANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTG-DCG 262
+ + E+ + + AN P++ I A+ Y+ G++
Sbjct: 117 ECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT-ERLANYTGGIYAEYQDT 175
Query: 263 TELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRM 302
T ++H V+ G+G ++GT+YW+V+NSWG WGE G++R+
Sbjct: 176 TYINHVVSVAGWG-ISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 112/251 (44%), Gaps = 46/251 (18%)
Query: 104 IDVPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISL--SEQE 157
+ +PA+ D W + + I++QG CGS WAF AV A + T +S+ S ++
Sbjct: 5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAED 64
Query: 158 LVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PYQA------VDGT-- 202
L++C S GC GG +A+ F G+ + Y PY V+G
Sbjct: 65 LLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARP 123
Query: 203 ----------CNKTNEASHVAKIK-----GYETVP-ANSEEALLKAV-ANQPVAVSIDAS 245
C+K E + K GY + +NSE+ ++ + N PV +
Sbjct: 124 PCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY 183
Query: 246 GSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
S F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 184 -SDFLLYKSGVYQHVTGEMMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILR 241
Query: 305 DIDAKEGLCGI 315
D CGI
Sbjct: 242 GQDH----CGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAV-AATEGITQLTTGKL-ISLSEQELV 159
+P + D W + I++QG CGSCWAF AV A ++ I T G++ + +S ++L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 160 SCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT---- 202
+C GC GG A+ F G+ + Y PY V+G
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 203 --------CNKTNEASHVAKIK-----GYET--VPANSEEALLKAVANQPVAVSIDASGS 247
CNK EA + K GY + V + +E + + N PV + S
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-S 178
Query: 248 AFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306
F Y SGV+ + G + H + +G+G NG YWLV NSW WG+ G+ ++ R
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWG-IENGVPYWLVANSWNADWGDNGFFKILR-- 235
Query: 307 DAKEGLCGI 315
E CGI
Sbjct: 236 --GENHCGI 242
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 46/251 (18%)
Query: 104 IDVPATMD----WRKNGAVTPIKNQGPCGSCWAFSAV-AATEGITQLTTGKL-ISLSEQE 157
I++P + D W + I++QG CGS WAF AV A ++ I T G++ + +S ++
Sbjct: 61 INLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAED 120
Query: 158 LVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT-- 202
L++C GC GG A+ F G+ + Y PY V+G
Sbjct: 121 LLTCCGIQCGDGCNGGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 179
Query: 203 ----------CNKTNEASHVAKIK-----GYET--VPANSEEALLKAVANQPVAVSIDAS 245
CNK EA + K GY + V + +E + + N PV +
Sbjct: 180 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 239
Query: 246 GSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
S F Y SGV+ + G + H + +G+G NG YWLV NSW WG+ G+ ++ R
Sbjct: 240 -SDFLTYKSGVYKHEAGDVMGGHAIRILGWG-IENGVPYWLVANSWNADWGDNGFFKILR 297
Query: 305 DIDAKEGLCGI 315
E CGI
Sbjct: 298 ----GENHCGI 304
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 44/244 (18%)
Query: 104 IDVPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTG--KLISLSEQE 157
+++P++ D W + ++ I++Q CGSCWAF AV A + + +G + + LS +
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 158 LVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEAN---------YPYQAVDG------- 201
L+SC S GCEGG + A+ + + +GI T ++ YP+ +
Sbjct: 61 LLSCCES-CGLGCEGGILGPAWDYWV-KEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYP 118
Query: 202 --------------TCNKTNEASHVA-KIKGYETVPA-NSEEALLKAVANQ-PVAVSIDA 244
TC K + + K +G + N E+A+ K + PV
Sbjct: 119 PCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTV 178
Query: 245 SGSAFQFYSSGVFTGDCGTEL-DHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMK 303
F Y SG++ G L H + +G+G N YWL+ NSW WGE GY R+
Sbjct: 179 Y-EDFLNYKSGIYKHITGETLGGHAIRIIGWG-VENKAPYWLIANSWNEDWGENGYFRIV 236
Query: 304 RDID 307
R D
Sbjct: 237 RGRD 240
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAA-TEGITQLTTGKLISLSEQELVS 160
+P++ D W + I +Q CGSCWA +A +A ++ + + + +S +L++
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 161 CDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGT------------------ 202
C S GC GG+ + A+ + + G+ ++ PY +
Sbjct: 154 C-CSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 211
Query: 203 ---CNKT--NEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV 256
CN T + V + + + E+ ++ + + P V+ D F Y+SGV
Sbjct: 212 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 270
Query: 257 FTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
+ G L H V VG+G T+NG YW + NSW T WG +GY ++R
Sbjct: 271 YHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRR 318
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAA-TEGITQLTTGKLISLSEQELVS 160
+P++ D W + I +Q CGSCWA +A +A ++ + + + +S +L++
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 161 CDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGT------------------ 202
C S GC GG+ + A+ + + G+ ++ PY +
Sbjct: 131 C-CSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 188
Query: 203 ---CNKT--NEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVSIDASGSAFQFYSSGV 256
CN T + V + + + E+ ++ + + P V+ D F Y+SGV
Sbjct: 189 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 247
Query: 257 FTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
+ G L H V VG+G T+NG YW + NSW T WG +GY ++R
Sbjct: 248 YHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRR 295
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 38/231 (16%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAA-TEGITQLTTGKLISLSEQELVS 160
+P++ D W + I +Q CGSCWA +A +A ++ + + + +S +L++
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 161 CDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQ----------------------- 197
C S GC GG+ + A+ + + G+ ++ PY
Sbjct: 132 C-CSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 189
Query: 198 --AVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVSIDASGSAFQFYSS 254
D TC+ + V + + + E+ ++ + + P V+ D F Y+S
Sbjct: 190 TPKCDYTCD--DPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNS 246
Query: 255 GVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKR 304
GV+ G L H V VG+G T+NG YW + NSW T WG +GY ++R
Sbjct: 247 GVYHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRR 296
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 46/249 (18%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAV-AATEGITQLTTGKL-ISLSEQELV 159
+P + D W + I++QG CGSCWAF AV A ++ I + G++ + +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 160 SCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT---- 202
+C GC GGE A+ F G+ + Y PY V+G+
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWT-KKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 203 --------CNKTNEASHVAKIK-------GYETVPANSEEALLKAVANQPVAVSIDASGS 247
C+KT E + K +V N +E + + N PV + S
Sbjct: 120 TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY-S 178
Query: 248 AFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306
F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 307 DAKEGLCGI 315
D CGI
Sbjct: 238 DH----CGI 242
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 110/249 (44%), Gaps = 46/249 (18%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAV-AATEGITQLTTGKL-ISLSEQELV 159
+P + D W + I++QG CGSCWAF AV A ++ I + G++ + +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 160 SCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------QAVDGT---- 202
+C GC GG A+ F G+ + Y PY V+G+
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWT-KKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 203 --------CNKTNEASHVAKIK-------GYETVPANSEEALLKAVANQPVAVSIDASGS 247
C+KT E + K +V N +E + + N PV + S
Sbjct: 120 TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY-S 178
Query: 248 AFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306
F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWG-VENGTPYWLVGNSWNTDWGDNGFFKILRGQ 237
Query: 307 DAKEGLCGI 315
D CGI
Sbjct: 238 DH----CGI 242
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 34/172 (19%)
Query: 106 VPATMDWRKNGA---VTPIKNQGPCGSCWAFSAVAATEGITQLTT--GKLISLSEQELVS 160
+P + DWR V+P++NQ CGSC++F+++ E ++ T + LS QE+VS
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 161 CDTSGVDHGCEGGEMEDAFKFII-----HNDGITTEANYPYQAVDGTCNK--------TN 207
C S GCEGG F ++I + G+ EA +PY D C ++
Sbjct: 61 C--SQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSS 113
Query: 208 EASHVAKIKGYETVPANSEEALLK--AVANQPVAVSIDASGSAFQFYSSGVF 257
E +V G EAL+K V + P+AV+ + F Y G++
Sbjct: 114 EYHYVGGFYG------GCNEALMKLELVHHGPMAVAFEVYDD-FLHYKKGIY 158
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 40/198 (20%)
Query: 151 ISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY-------PY------Q 197
+ +S ++L++C S GC GG +A+ F G+ + Y PY
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEH 61
Query: 198 AVDGT------------CNKTNEASHVAKIK-----GYETVP-ANSEEALLKAV-ANQPV 238
V+G+ C+K E + K GY + +NSE+ ++ + N PV
Sbjct: 62 HVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPV 121
Query: 239 AVSIDASGSAFQFYSSGVFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEE 297
+ S F Y SGV+ G + H + +G+G NGT YWLV NSW T WG+
Sbjct: 122 EGAFSVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWG-VENGTPYWLVANSWNTDWGDN 179
Query: 298 GYIRMKRDIDAKEGLCGI 315
G+ ++ R D CGI
Sbjct: 180 GFFKILRGQDH----CGI 193
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 33/215 (15%)
Query: 121 IKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFK 180
+++QG C + W F++ E I + + +S + +C C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 181 FIIHNDG-ITTEANYPYQAV------------------DGTCNKTNEASHVAKIKGYETV 221
II + G + E+NYPY V +G + KGY
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 222 PA----NSEEALLKAVANQ-----PVAVSIDASGSAFQFYSSGVFTGDCGTEL-DHGVTA 271
+ ++ +A +K + + V I A +S CG + DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 272 VGYGATANG----TKYWLVKNSWGTSWGEEGYIRM 302
VGYG N YW+V+NSWG WG+EGY ++
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 33/215 (15%)
Query: 121 IKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFK 180
+++QG C + W F++ E I + + +S + +C C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 181 FIIHNDG-ITTEANYPYQAV------------------DGTCNKTNEASHVAKIKGYETV 221
II + G + E+NYPY V +G + KGY
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 222 PA----NSEEALLKAVANQ-----PVAVSIDASGSAFQFYSSGVFTGDCGTEL-DHGVTA 271
+ ++ +A +K + + V I A +S CG + DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 272 VGYGATAN--GTK--YWLVKNSWGTSWGEEGYIRM 302
VGYG N G K YW+V+NSWG WG+EGY ++
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 266 DHGVTAVGYGA-TANGTKYWLVKNSWGTSWGEEGYIRMKRDID 307
+H V VGYG +A+G YW+VKNSWGT WGE GY R++R D
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD 52
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 203 CNKTNEASHVAKIK-------GYETVPANSEEALLKAVANQPVAVSIDASGSAFQFYSSG 255
CNKT E + K +V N +E + + N PV + S F Y SG
Sbjct: 80 CNKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSG 138
Query: 256 VFTGDCGTELD-HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCG 314
V+ G + H + +G+G NGT YWLV NSW T WG+ G+ ++ R D CG
Sbjct: 139 VYQHVSGEIMGGHAIRILGWG-VENGTPYWLVGNSWNTDWGDNGFFKILRGQDH----CG 193
Query: 315 I 315
I
Sbjct: 194 I 194
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 281 TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323
KYWLVKNSWG WG GY++M +D + CGIA +SYPT
Sbjct: 2 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 41
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 51.2 bits (121), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 12 QEASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFAD 71
+EA + + + Y K Y EEK++R+ IFK+N+ +I + N G Y L +N F D
Sbjct: 17 KEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYS-YSLKMNHFGD 75
Query: 72 QTNQEFKAFRNGYRRPDGLTS 92
+ EF+ G+++ L S
Sbjct: 76 LSRDEFRRKYLGFKKSRNLKS 96
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 106 VPATMD----WRKNGAVTPIKNQGPCGSCWAFSAVAA 138
+PA+ D W + + I++QG CGSCWAF AV A
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEA 37
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 108 ATMDWRKNGAVTPIKNQGPCGSCWAFSAVAA 138
A W + I++QG CGSCWAF AV A
Sbjct: 7 AREQWPNCPTIKEIRDQGSCGSCWAFGAVEA 37
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 267 HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRM 302
H V VGY + +++ ++NSWG + GE+GY M
Sbjct: 237 HAVLCVGYD---DEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 266 DHGVTAVGYGATANGTKYWLVKNSWGTS-------WGEEGYIRMK 303
DHG G G +Y+ VKNSWGT+ + + ++R K
Sbjct: 317 DHGXQIYGIAKDQEGNEYYXVKNSWGTNSKYNGIWYASKAFVRYK 361
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 114 KNGAVTPIKNQGPCGSCWAFSAVAATE------GITQLTTGKLISLSEQELVSCDTSGVD 167
K +T +KNQ G+CW +S+ + E G + + ++ L D +
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLESELLRXGKGEYDLSEXFTVYNTYLDRADAAVRT 77
Query: 168 HG----CEGGEMEDAF 179
HG +GG DA
Sbjct: 78 HGDVSFSQGGSFYDAL 93
>pdb|1G0D|A Chain A, Crystal Structure Of Red Sea Bream Transglutaminase
Length = 695
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAAT 139
VP W K G V P+K G CW F+AVA T
Sbjct: 253 VPILQQWSKAG-VRPVKY----GQCWVFAAVACT 281
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 229 LLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKN 288
+L V + ++ A Q ++ T +L G+ V +GA TK W N
Sbjct: 16 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN 75
Query: 289 SWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSY 321
W W + + I E LC IA+D +
Sbjct: 76 FWCEFWTSIDVLCVTASI---ETLCVIAVDRYF 105
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 229 LLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKN 288
+L V + ++ A Q ++ T +L G+ V +GA TK W N
Sbjct: 193 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN 252
Query: 289 SWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSY 321
W W + + I E LC IA+D +
Sbjct: 253 FWCEFWTSIDVLCVTASI---ETLCVIAVDRYF 282
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 170 CEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEAL 229
E G E A ++++ DGI + VD T +N + +I G E + AL
Sbjct: 1299 IEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEA----TRSAL 1354
Query: 230 LKAVAN 235
LK + N
Sbjct: 1355 LKELRN 1360
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 125 GPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIH 184
G CG F + I L TGK + ++++ + + G +A +I
Sbjct: 395 GACGKVVPFFSAK----IVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNP--EATSALID 448
Query: 185 NDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLK 231
DG + Y DG + + K KGY+ PA E LL+
Sbjct: 449 KDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQ 495
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 284 WLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPTA 324
WL+++ G +WG+E ++ DI A E MDS+ P A
Sbjct: 285 WLMQHGKGKTWGDELKKYVQIDIQANE------MDSNQPIA 319
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 119 TPIKNQGPCGSCWAFSA 135
TP+ NQ G CW F+A
Sbjct: 62 TPVTNQKSSGRCWLFAA 78
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 119 TPIKNQGPCGSCWAFSA 135
TP+ NQ G CW F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 119 TPIKNQGPCGSCWAFSA 135
TP+ NQ G CW F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 119 TPIKNQGPCGSCWAFSA 135
TP+ NQ G CW F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 119 TPIKNQGPCGSCWAFSA 135
TP+ NQ G CW F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 119 TPIKNQGPCGSCWAFSA 135
TP+ NQ G CW F+A
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
(Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
Length = 157
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 196 YQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQPVAVSI------DASGSAF 249
Y D T + V + GY T+P NSE +L + AV++ D + +
Sbjct: 52 YDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWY 111
Query: 250 QFYSS 254
QF++S
Sbjct: 112 QFFNS 116
>pdb|3S6X|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6Y|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Z|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
Length = 325
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 267 HGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMK 303
+G V G ++ GT ++ KN W W ++G +R++
Sbjct: 264 YGAQTVAIGLSSGGTPQYMSKNLWVEQW-QDGVLRLR 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,210,223
Number of Sequences: 62578
Number of extensions: 443952
Number of successful extensions: 1277
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 154
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)