Query 047793
Match_columns 324
No_of_seqs 308 out of 1659
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.8E-84 6.2E-89 575.8 26.2 298 15-323 66-370 (372)
2 PTZ00021 falcipain-2; Provisio 100.0 4E-80 8.6E-85 589.9 32.4 305 13-324 162-488 (489)
3 PTZ00203 cathepsin L protease; 100.0 6.6E-80 1.4E-84 572.6 32.7 298 13-322 31-338 (348)
4 PTZ00200 cysteine proteinase; 100.0 2.1E-77 4.6E-82 569.5 31.8 301 13-324 119-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 6.6E-70 1.4E-74 502.2 28.3 287 24-323 30-323 (325)
6 cd02698 Peptidase_C1A_Cathepsi 100.0 1.2E-58 2.7E-63 412.9 22.5 211 106-323 1-237 (239)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 1.1E-58 2.3E-63 414.7 22.0 209 106-322 1-240 (243)
8 cd02248 Peptidase_C1A Peptidas 100.0 4.4E-58 9.5E-63 402.0 22.5 207 107-322 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 3.6E-57 7.9E-62 402.7 21.2 205 107-320 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 1.3E-56 2.9E-61 394.2 17.9 213 106-323 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 1.4E-54 2.9E-59 422.9 23.3 213 103-323 378-675 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 3E-54 6.5E-59 416.5 22.0 207 104-320 203-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 6.1E-51 1.3E-55 346.2 17.4 168 106-319 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 1E-47 2.2E-52 338.5 20.3 195 109-306 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 3.3E-46 7.2E-51 373.6 21.2 202 118-324 544-781 (1004)
16 KOG1544 Predicted cysteine pro 100.0 4.8E-45 1E-49 320.9 8.0 262 49-320 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 5.8E-32 1.3E-36 244.0 8.2 199 105-307 98-315 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 1.9E-24 4.2E-29 205.2 13.1 181 119-305 55-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 6.7E-18 1.4E-22 116.9 7.6 58 20-77 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.7 5E-17 1.1E-21 154.8 15.1 180 119-304 56-399 (438)
21 smart00848 Inhibitor_I29 Cathe 99.6 1.9E-15 4.1E-20 104.2 5.7 57 20-76 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.9 1.1E-08 2.4E-13 92.1 10.5 76 226-303 297-400 (444)
23 KOG4128 Bleomycin hydrolases a 97.3 0.00021 4.6E-09 64.8 3.7 77 119-196 63-168 (457)
24 PF13529 Peptidase_C39_2: Pept 97.2 0.0055 1.2E-07 49.1 10.7 126 120-290 4-144 (144)
25 PF08127 Propeptide_C1: Peptid 96.5 0.0033 7.2E-08 39.7 3.4 35 48-85 3-37 (41)
26 PF05543 Peptidase_C47: Stapho 95.5 0.14 3E-06 42.9 9.3 119 123-291 18-145 (175)
27 PF14399 Transpep_BrtH: NlpC/p 91.7 0.47 1E-05 43.8 6.5 55 226-288 78-133 (317)
28 COG4990 Uncharacterized protei 86.3 2 4.4E-05 36.1 5.7 50 221-291 118-168 (195)
29 PF09778 Guanylate_cyc_2: Guan 82.7 5.3 0.00012 34.8 6.9 59 225-288 112-180 (212)
30 PF12385 Peptidase_C70: Papain 75.7 45 0.00097 27.7 9.8 38 225-277 97-135 (166)
31 cd02549 Peptidase_C39A A sub-f 75.3 10 0.00023 29.9 6.3 44 229-290 70-114 (141)
32 cd00044 CysPc Calpains, domain 72.9 12 0.00025 34.8 6.7 28 264-292 234-263 (315)
33 PF01640 Peptidase_C10: Peptid 53.7 64 0.0014 27.5 7.3 51 227-301 141-192 (192)
34 KOG4702 Uncharacterized conser 39.7 76 0.0017 22.4 4.4 31 18-49 29-59 (77)
35 smart00230 CysPc Calpain-like 35.2 55 0.0012 30.4 4.2 27 264-291 226-254 (318)
36 PF15588 Imm7: Immunity protei 27.4 1.9E+02 0.0042 22.4 5.5 36 268-304 17-58 (115)
37 PF07351 DUF1480: Protein of u 23.0 1E+02 0.0022 22.2 2.8 23 255-277 27-49 (80)
38 TIGR02608 delta_60_rpt delta-6 21.7 2.6E+02 0.0056 18.7 5.0 36 268-303 13-53 (55)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-84 Score=575.78 Aligned_cols=298 Identities=41% Similarity=0.767 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHHHHHhhcCccCC-CCCCCC
Q 047793 15 SLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYRRP-DGLTSR 93 (324)
Q Consensus 15 ~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~-~~~~~~ 93 (324)
.+.+.|..|+.+|+|.|.+.+|..+|+.||++|+..+++++.....|.+.|+|+|||||+|||++++++.+.. ...+..
T Consensus 66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~~ 145 (372)
T KOG1542|consen 66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPGD 145 (372)
T ss_pred chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCccc
Confidence 3478899999999999999999999999999999999999885445899999999999999999999876653 111111
Q ss_pred CCCcccccCCCCCCceeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCCCCCCCCC
Q 047793 94 KGTSFKYENVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGG 173 (324)
Q Consensus 94 ~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~gc~gG 173 (324)
....+......||++||||++|.||||||||.||||||||+++++|++..|+++++++||||+|+||+.. +.||+||
T Consensus 146 -~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~--d~gC~GG 222 (372)
T KOG1542|consen 146 -AAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC--DNGCNGG 222 (372)
T ss_pred -cccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc--CCcCCCC
Confidence 1111123345899999999999999999999999999999999999999999999999999999999874 8999999
Q ss_pred chHHHHHHHHHhCCcCCCCcccccCCCC-cccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCcccc
Q 047793 174 EMEDAFKFIIHNDGITTEANYPYQAVDG-TCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQF 251 (324)
Q Consensus 174 ~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~ 251 (324)
.+..|++|+++..|+..|++|||++..+ .|... .....+.|++|..++ .++++|.+.|. +|||+|+|++. .+++
T Consensus 223 l~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~-~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~--~mQ~ 298 (372)
T KOG1542|consen 223 LMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD-KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK--PMQF 298 (372)
T ss_pred ChhHHHHHHHHhCCccccccCCccccCCCccccc-hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--HHHH
Confidence 9999999988888999999999999888 99988 467889999999998 68999999888 89999999976 6999
Q ss_pred ccCCeeeCC---CCCC-CCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceee
Q 047793 252 YSSGVFTGD---CGTE-LDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323 (324)
Q Consensus 252 y~~Giy~~~---~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 323 (324)
|.+||+.+. |+.. ++|||+|||||.....++|||||||||++|||+||+|+.||. |.|||+++++-++
T Consensus 299 YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~----N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 299 YRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS----NACGIADMVSSAA 370 (372)
T ss_pred hcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc----cccccccchhhhh
Confidence 999999982 8865 999999999999844799999999999999999999999997 4699999987654
No 2
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=4e-80 Score=589.89 Aligned_cols=305 Identities=35% Similarity=0.665 Sum_probs=257.7
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHHHHHhhcCccCCC--C-
Q 047793 13 EASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYRRPD--G- 89 (324)
Q Consensus 13 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~--~- 89 (324)
..+....|++||++|+|+|.+.+|+.+|+.||++|++.|++||++++.+|++|+|+|+|||+|||++++++..... .
T Consensus 162 n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~ 241 (489)
T PTZ00021 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSN 241 (489)
T ss_pred ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccc
Confidence 3455678999999999999999899999999999999999999876689999999999999999998877643210 0
Q ss_pred CC-CCCCCc-------ccccCCCCCCceeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhh
Q 047793 90 LT-SRKGTS-------FKYENVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSC 161 (324)
Q Consensus 90 ~~-~~~~~~-------~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c 161 (324)
.. ...... +.......+|+++|||+.|.|+||||||.||||||||+++++|++++|+++..+.||+|+|+||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDC 321 (489)
T PTZ00021 242 GKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDC 321 (489)
T ss_pred cccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhh
Confidence 00 000000 0001111249999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHhCCcCCCCcccccCC-CCcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeE
Q 047793 162 DTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAV-DGTCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVA 239 (324)
Q Consensus 162 ~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~ 239 (324)
+.. +.||.||++..|+.|+.++.|+++|++|||.+. .+.|... .....++|++|..++ +++|+++|. .|||+
T Consensus 322 s~~--n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~-~~~~~~~i~~y~~i~---~~~lk~al~~~GPVs 395 (489)
T PTZ00021 322 SFK--NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNID-RCKEKYKIKSYVSIP---EDKFKEAIRFLGPIS 395 (489)
T ss_pred ccC--CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccc-cccccceeeeEEEec---HHHHHHHHHhcCCeE
Confidence 864 789999999999999987779999999999987 4789754 334567899998886 468999998 69999
Q ss_pred EEEeccCCccccccCCeeeCCCCCCCCeEEEEeeecccC---------CCccEEEEEcCCCCCCCCCceEEEEecCCCCC
Q 047793 240 VSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATA---------NGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKE 310 (324)
Q Consensus 240 v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~ 310 (324)
|+|++. .+|++|++|||+++|+..++|||+|||||++. .+.+|||||||||++|||+|||||+|+.+...
T Consensus 396 v~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~ 474 (489)
T PTZ00021 396 VSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLM 474 (489)
T ss_pred EEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCC
Confidence 999998 68999999999988988899999999999752 12579999999999999999999999975444
Q ss_pred CCcccccccceeeC
Q 047793 311 GLCGIAMDSSYPTA 324 (324)
Q Consensus 311 ~~Cgi~~~~~~p~~ 324 (324)
|+|||++.++||++
T Consensus 475 n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 475 KTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCcccceeEec
Confidence 68999999999985
No 3
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=6.6e-80 Score=572.60 Aligned_cols=298 Identities=37% Similarity=0.709 Sum_probs=249.1
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHHHHHhhcCccC-CCCCC
Q 047793 13 EASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYRR-PDGLT 91 (324)
Q Consensus 13 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~-~~~~~ 91 (324)
...++.+|++||++|+|.|.+.+|+.+|+.||++|++.|++||++ +.+|++|+|+|+|||+|||++++++... .....
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 567888999999999999999888999999999999999999985 4689999999999999999987653211 11000
Q ss_pred CCCCCcccc--cCCCCCCceeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCCCCC
Q 047793 92 SRKGTSFKY--ENVIDVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHG 169 (324)
Q Consensus 92 ~~~~~~~~~--~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~g 169 (324)
......... ..+.+||++||||++|.|+||||||.||||||||+++++|+++++++++.+.||+|+|+||+.. +.|
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~--~~G 187 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV--DNG 187 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC--CCC
Confidence 000011111 1234799999999999999999999999999999999999999999999999999999999864 789
Q ss_pred CCCCchHHHHHHHHHh--CCcCCCCcccccCCCC---cccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEe
Q 047793 170 CEGGEMEDAFKFIIHN--DGITTEANYPYQAVDG---TCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSID 243 (324)
Q Consensus 170 c~gG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~ 243 (324)
|+||++..|++|+.++ +|+++|++|||.+.++ .|..........++++|..++. +++.|+.+|+ +|||+|+|+
T Consensus 188 C~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~ 266 (348)
T PTZ00203 188 CGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVD 266 (348)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEE
Confidence 9999999999999754 5689999999998765 5764322223467888888874 7888999998 699999999
Q ss_pred ccCCccccccCCeeeCCCC-CCCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccccee
Q 047793 244 ASGSAFQFYSSGVFTGDCG-TELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322 (324)
Q Consensus 244 ~~~~~f~~y~~Giy~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p 322 (324)
+. +|++|++|||.. |. ..++|||+|||||.+ +|++|||||||||++||++|||||+|+. |.|||++.++..
T Consensus 267 a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~-~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 267 AS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT-GEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYPVSV 338 (348)
T ss_pred hh--hhcCccCceeec-cCCCCCCeEEEEEEEecC-CCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceEEEE
Confidence 85 799999999985 75 357999999999987 6899999999999999999999999986 459999777654
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.1e-77 Score=569.50 Aligned_cols=301 Identities=35% Similarity=0.681 Sum_probs=252.2
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHHHHHhhcCccCCCCC--
Q 047793 13 EASLSEKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYRRPDGL-- 90 (324)
Q Consensus 13 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~~~-- 90 (324)
|..+...|++|+++|+|.|.+.+|+.+|+.+|++|++.|++||. +.+|++|+|+|+|||+|||.+++++...+...
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~ 196 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNS 196 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCCcccccc
Confidence 44567889999999999999988999999999999999999996 46899999999999999999887654322110
Q ss_pred --C-----CC--CCCcccc---------cCC----CCCCceeecccCCCCCcccCCC-CCcchHHHHHHHHHhHHHHhhc
Q 047793 91 --T-----SR--KGTSFKY---------ENV----IDVPATMDWRKNGAVTPIKNQG-PCGSCWAFSAVAATEGITQLTT 147 (324)
Q Consensus 91 --~-----~~--~~~~~~~---------~~~----~~lP~~~Dwr~~g~v~pV~dQg-~cGsCwAfA~~~~le~~~~~~~ 147 (324)
. .+ ....+.. .++ ..+|++||||+.|.|+|||||| .||||||||+++++|+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 0 00 0000000 011 1369999999999999999999 9999999999999999999999
Q ss_pred CCCccCCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHhCCcCCCCcccccCCCCcccCCCCCCceEEEeeeEEcCCCcHH
Q 047793 148 GKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEE 227 (324)
Q Consensus 148 ~~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~ 227 (324)
+..+.||+|+|+||+.. +.||+||++..|++|+.++ |+++|++|||.+..+.|.... .....|.+|..++ ..+
T Consensus 277 ~~~~~LSeQqLvDC~~~--~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~ 349 (448)
T PTZ00200 277 DKSVDLSEQELVNCDTK--SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKD 349 (448)
T ss_pred CCCeecCHHHHhhccCc--cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHH
Confidence 99999999999999863 7899999999999999755 999999999999999997652 3346688887664 355
Q ss_pred HHHHHHHcCCeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEeeeccc-CCCccEEEEEcCCCCCCCCCceEEEEecC
Q 047793 228 ALLKAVANQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGAT-ANGTKYWLVKNSWGTSWGEEGYIRMKRDI 306 (324)
Q Consensus 228 ~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i~~~~ 306 (324)
.+++++.+|||+|+|.++ .+|+.|++|||.++|+..++|||+|||||.+ .+|.+|||||||||++||++|||||+|+.
T Consensus 350 ~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~ 428 (448)
T PTZ00200 350 VLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTN 428 (448)
T ss_pred HHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCC
Confidence 677777789999999998 7899999999998898779999999999864 36889999999999999999999999974
Q ss_pred CCCCCCcccccccceeeC
Q 047793 307 DAKEGLCGIAMDSSYPTA 324 (324)
Q Consensus 307 ~~~~~~Cgi~~~~~~p~~ 324 (324)
. ..|.|||++.+.||++
T Consensus 429 ~-g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 429 E-GTDKCGILTVGLTPVF 445 (448)
T ss_pred C-CCCcCCccccceeeEE
Confidence 2 2367999999999974
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-70 Score=502.24 Aligned_cols=287 Identities=47% Similarity=0.847 Sum_probs=249.6
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHHHHHhhcCccCCCCCCCCCCCcccccCC
Q 047793 24 MSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYRRPDGLTSRKGTSFKYENV 103 (324)
Q Consensus 24 ~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (324)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.....+|++|+|+|+|+|.+|++..+.++..+... . .........
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~--~-~~~~~~~~~ 106 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK--R-DKFTEKLDG 106 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc--c-cccccccch
Confidence 6677788877778899999999999999999996678999999999999999999987766544321 1 011111223
Q ss_pred CCCCceeecccCC-CCCcccCCCCCcchHHHHHHHHHhHHHHhhcC-CCccCCHHHHhhhcCCCCCCCCCCCchHHHHHH
Q 047793 104 IDVPATMDWRKNG-AVTPIKNQGPCGSCWAFSAVAATEGITQLTTG-KLISLSEQELVSCDTSGVDHGCEGGEMEDAFKF 181 (324)
Q Consensus 104 ~~lP~~~Dwr~~g-~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~ 181 (324)
.+||++||||++| .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+.. .+.||.||.+..|++|
T Consensus 107 ~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~y 185 (325)
T KOG1543|consen 107 DDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKY 185 (325)
T ss_pred hhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHH
Confidence 5899999999996 55669999999999999999999999999999 8999999999999987 6789999999999999
Q ss_pred HHHhCCcCC-CCcccccCCCCcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCccccccCCeeeC
Q 047793 182 IIHNDGITT-EANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTG 259 (324)
Q Consensus 182 ~~~~~Gi~~-e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~ 259 (324)
+.++ |+++ +++|||.+..+.|..... .....+.++..++.+ +++|+.+|+ +|||+|+|.+.. +|++|++|||.+
T Consensus 186 i~~~-G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy~~ 261 (325)
T KOG1543|consen 186 IKKN-GGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVYAE 261 (325)
T ss_pred HHHh-CCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCceEeC
Confidence 9988 6666 999999999999998844 567778888888855 999999999 799999999995 999999999999
Q ss_pred CCC-C-CCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccce-ee
Q 047793 260 DCG-T-ELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSY-PT 323 (324)
Q Consensus 260 ~~~-~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~-p~ 323 (324)
++. . .++|||+|||||. .++.+|||||||||+.|||+|||||.|+.+. |+|++.++| |+
T Consensus 262 ~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~----~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 262 EKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNK----CGIASEASYGPI 323 (325)
T ss_pred CCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCc----hhhhcccccCCC
Confidence 944 4 5999999999999 6789999999999999999999999999864 999999999 75
No 6
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.2e-58 Score=412.87 Aligned_cols=211 Identities=29% Similarity=0.646 Sum_probs=181.4
Q ss_pred CCceeecccCC---CCCcccCCC---CCcchHHHHHHHHHhHHHHhhcC---CCccCCHHHHhhhcCCCCCCCCCCCchH
Q 047793 106 VPATMDWRKNG---AVTPIKNQG---PCGSCWAFSAVAATEGITQLTTG---KLISLSEQELVSCDTSGVDHGCEGGEME 176 (324)
Q Consensus 106 lP~~~Dwr~~g---~v~pV~dQg---~cGsCwAfA~~~~le~~~~~~~~---~~~~lS~q~l~~c~~~~~~~gc~gG~~~ 176 (324)
||++||||+.+ +|+|||||| .||||||||++++||+++.|+++ ..+.||+|+|+||+. +.||+||++.
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~ 77 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPG 77 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHH
Confidence 79999999988 899999998 89999999999999999999865 357899999999987 5799999999
Q ss_pred HHHHHHHHhCCcCCCCcccccCCCCcccCCCC--------------CCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEE
Q 047793 177 DAFKFIIHNDGITTEANYPYQAVDGTCNKTNE--------------ASHVAKIKGYETVPANSEEALLKAVA-NQPVAVS 241 (324)
Q Consensus 177 ~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~--------------~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~ 241 (324)
.+++|+.++ |+++|++|||......|..... ....++++.|..++ ++++|+++|. +|||+|+
T Consensus 78 ~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~ 154 (239)
T cd02698 78 GVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCG 154 (239)
T ss_pred HHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEE
Confidence 999999865 9999999999987766753100 12345677777775 5788999887 7999999
Q ss_pred EeccCCccccccCCeeeCC-CCCCCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecC-CCCCCCccccccc
Q 047793 242 IDASGSAFQFYSSGVFTGD-CGTELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDI-DAKEGLCGIAMDS 319 (324)
Q Consensus 242 ~~~~~~~f~~y~~Giy~~~-~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~~~~~Cgi~~~~ 319 (324)
|.+. ++|+.|++|||+.. |...++|||+|||||++.++++|||||||||++|||+|||||+|+. .+..+.|||++.+
T Consensus 155 i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~ 233 (239)
T cd02698 155 IMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDC 233 (239)
T ss_pred EEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccce
Confidence 9998 58999999999887 5567899999999998744899999999999999999999999998 1222469999999
Q ss_pred ceee
Q 047793 320 SYPT 323 (324)
Q Consensus 320 ~~p~ 323 (324)
.|+.
T Consensus 234 ~~~~ 237 (239)
T cd02698 234 AWAD 237 (239)
T ss_pred EEEe
Confidence 9875
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.1e-58 Score=414.68 Aligned_cols=209 Identities=36% Similarity=0.717 Sum_probs=179.0
Q ss_pred CCceeecccCC----CCCcccCCCCCcchHHHHHHHHHhHHHHhhcCC------CccCCHHHHhhhcCCCCCCCCCCCch
Q 047793 106 VPATMDWRKNG----AVTPIKNQGPCGSCWAFSAVAATEGITQLTTGK------LISLSEQELVSCDTSGVDHGCEGGEM 175 (324)
Q Consensus 106 lP~~~Dwr~~g----~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~------~~~lS~q~l~~c~~~~~~~gc~gG~~ 175 (324)
||++||||+.+ +|+||||||.||||||||++++||++++|+.++ .+.||+|+|++|... +.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~--~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY--SQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC--CCCCCCCCH
Confidence 79999999998 999999999999999999999999999998776 688999999999863 689999999
Q ss_pred HHHHHHHHHhCCcCCCCcccccC-CCCcccCCCCCCceEEEeeeEEcC----CCcHHHHHHHHH-cCCeEEEEeccCCcc
Q 047793 176 EDAFKFIIHNDGITTEANYPYQA-VDGTCNKTNEASHVAKIKGYETVP----ANSEEALLKAVA-NQPVAVSIDASGSAF 249 (324)
Q Consensus 176 ~~a~~~~~~~~Gi~~e~~yPY~~-~~~~c~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~l~-~gPV~v~~~~~~~~f 249 (324)
..++.|+.+. |+++|++|||.. ....|..........+++.|..+. ..++++|+++|. +|||+++|++. ++|
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F 156 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDF 156 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccc
Confidence 9999999755 999999999998 677897652133344455554442 247889999998 79999999998 789
Q ss_pred ccccCCeeeCC-----CCC---------CCCeEEEEeeecccC-CCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcc
Q 047793 250 QFYSSGVFTGD-----CGT---------ELDHGVTAVGYGATA-NGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCG 314 (324)
Q Consensus 250 ~~y~~Giy~~~-----~~~---------~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cg 314 (324)
++|++|||+.+ |.. .++|||+|||||++. +|.+|||||||||++||++|||||+|+. +.||
T Consensus 157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cg 232 (243)
T cd02621 157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECG 232 (243)
T ss_pred cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccC
Confidence 99999999875 532 479999999999874 4889999999999999999999999986 3599
Q ss_pred ccccccee
Q 047793 315 IAMDSSYP 322 (324)
Q Consensus 315 i~~~~~~p 322 (324)
|++.+++.
T Consensus 233 i~~~~~~~ 240 (243)
T cd02621 233 IESQAVFA 240 (243)
T ss_pred cccceEee
Confidence 99998653
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=4.4e-58 Score=402.00 Aligned_cols=207 Identities=57% Similarity=1.103 Sum_probs=188.2
Q ss_pred CceeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHhC
Q 047793 107 PATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHND 186 (324)
Q Consensus 107 P~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~~~~~~ 186 (324)
|++||||+.+.++||+|||.||+|||||++++||++++++++..++||+|+|++|... .+.+|.||.+..+++++. +.
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~-~~ 78 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVK-NG 78 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHH-HC
Confidence 8899999999999999999999999999999999999999988899999999999874 468999999999999886 55
Q ss_pred CcCCCCcccccCCCCcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCccccccCCeeeCC-C-CC
Q 047793 187 GITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTGD-C-GT 263 (324)
Q Consensus 187 Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~-~~ 263 (324)
|+++|++|||......|... ......++.+|..++..+.++||++|+ +|||+++|.+. ++|+.|++|||..+ | ..
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~ 156 (210)
T cd02248 79 GLASESDYPYTGKDGTCKYN-SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNT 156 (210)
T ss_pred CcCccccCCccCCCCCccCC-CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCC
Confidence 99999999999888889876 345778999999998667899999998 69999999998 68999999999987 4 35
Q ss_pred CCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccccee
Q 047793 264 ELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYP 322 (324)
Q Consensus 264 ~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p 322 (324)
.++|||+|||||++ .+.+|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 157 ~~~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 157 NLNHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred cCCEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 78999999999998 5889999999999999999999999987 359999998887
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=3.6e-57 Score=402.67 Aligned_cols=205 Identities=36% Similarity=0.718 Sum_probs=172.9
Q ss_pred CceeecccC--CCC--CcccCCCCCcchHHHHHHHHHhHHHHhhcC--CCccCCHHHHhhhcCCCCCCCCCCCchHHHHH
Q 047793 107 PATMDWRKN--GAV--TPIKNQGPCGSCWAFSAVAATEGITQLTTG--KLISLSEQELVSCDTSGVDHGCEGGEMEDAFK 180 (324)
Q Consensus 107 P~~~Dwr~~--g~v--~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~ 180 (324)
|++||||++ +++ +||+|||.||||||||++++||+++.++++ ..+.||+|+|+||+.. .+.||+||++..+++
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 889999997 454 599999999999999999999999999887 7789999999999874 468999999999999
Q ss_pred HHHHhCCcCCCCcccccCCCCc------------------ccCCCC---CCceEEEeeeEEcCCCcHHHHHHHHH-cCCe
Q 047793 181 FIIHNDGITTEANYPYQAVDGT------------------CNKTNE---ASHVAKIKGYETVPANSEEALLKAVA-NQPV 238 (324)
Q Consensus 181 ~~~~~~Gi~~e~~yPY~~~~~~------------------c~~~~~---~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV 238 (324)
|++++ |+++|++|||...... |..... .....++..+..+. .++++||.+|. +|||
T Consensus 80 ~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv 157 (236)
T cd02620 80 YLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPV 157 (236)
T ss_pred HHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCe
Confidence 99865 9999999999876543 322110 11233455555555 46789999998 7999
Q ss_pred EEEEeccCCccccccCCeeeCCCCC-CCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccc
Q 047793 239 AVSIDASGSAFQFYSSGVFTGDCGT-ELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAM 317 (324)
Q Consensus 239 ~v~~~~~~~~f~~y~~Giy~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~ 317 (324)
+++|.+. ++|+.|++|||+.++.. .++|||+|||||++ ++++|||||||||++|||+|||||+|+. +.|||++
T Consensus 158 ~v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~ 231 (236)
T cd02620 158 QAAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGS----NECGIES 231 (236)
T ss_pred EEEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccC----ccccccc
Confidence 9999997 79999999999876553 57899999999987 7899999999999999999999999986 3599999
Q ss_pred ccc
Q 047793 318 DSS 320 (324)
Q Consensus 318 ~~~ 320 (324)
.++
T Consensus 232 ~~~ 234 (236)
T cd02620 232 EVV 234 (236)
T ss_pred cee
Confidence 875
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.3e-56 Score=394.23 Aligned_cols=213 Identities=45% Similarity=0.894 Sum_probs=183.9
Q ss_pred CCceeecccC-CCCCcccCCCCCcchHHHHHHHHHhHHHHhhc-CCCccCCHHHHhhhcCCCCCCCCCCCchHHHHHHHH
Q 047793 106 VPATMDWRKN-GAVTPIKNQGPCGSCWAFSAVAATEGITQLTT-GKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFII 183 (324)
Q Consensus 106 lP~~~Dwr~~-g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~~~ 183 (324)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...+.||+|+|++|.. ..+.+|+||++..++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~ 79 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIK 79 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeec
Confidence 7999999998 48999999999999999999999999999998 7889999999999997 2367999999999999999
Q ss_pred HhCCcCCCCcccccCCC-CcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCccccccCCeeeCC-
Q 047793 184 HNDGITTEANYPYQAVD-GTCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTGD- 260 (324)
Q Consensus 184 ~~~Gi~~e~~yPY~~~~-~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~- 260 (324)
++.|+++|++|||.... ..|..........++..|..+...+.++||++|. +|||++++.+...+|..|++|||..+
T Consensus 80 ~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~ 159 (219)
T PF00112_consen 80 NNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPD 159 (219)
T ss_dssp HHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTS
T ss_pred ccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccc
Confidence 74699999999999877 6888763222247889999998777999999999 59999999999446999999999997
Q ss_pred CC-CCCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceee
Q 047793 261 CG-TELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323 (324)
Q Consensus 261 ~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 323 (324)
|. ..++|||+|||||++ .+++|||||||||++||++|||||+|+.+ ++|||++.++||+
T Consensus 160 ~~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 160 CSNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred cccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 65 478999999999998 58999999999999999999999999985 3699999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=422.89 Aligned_cols=213 Identities=31% Similarity=0.599 Sum_probs=177.0
Q ss_pred CCCCCceeecccC----CCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCC-----C-----ccCCHHHHhhhcCCCCCC
Q 047793 103 VIDVPATMDWRKN----GAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGK-----L-----ISLSEQELVSCDTSGVDH 168 (324)
Q Consensus 103 ~~~lP~~~Dwr~~----g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~-----~-----~~lS~q~l~~c~~~~~~~ 168 (324)
..+||++||||+. +.++||+|||.||||||||++++||++++|+.++ . ..||+|+|+||+.. +.
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~--nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY--DQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC--CC
Confidence 4589999999984 6799999999999999999999999999998642 1 27999999999873 78
Q ss_pred CCCCCchHHHHHHHHHhCCcCCCCcccccCCCCcccCCCCC--------------------------------------C
Q 047793 169 GCEGGEMEDAFKFIIHNDGITTEANYPYQAVDGTCNKTNEA--------------------------------------S 210 (324)
Q Consensus 169 gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~--------------------------------------~ 210 (324)
||+||.+..|++|+.+. ||++|.+|||.+..+.|...... .
T Consensus 456 GC~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEP 534 (693)
T ss_pred CcCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999765 99999999999887788542110 1
Q ss_pred ceEEEeeeEEcC-------CCcHHHHHHHHH-cCCeEEEEeccCCccccccCCeeeCC-------CCC------------
Q 047793 211 HVAKIKGYETVP-------ANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTGD-------CGT------------ 263 (324)
Q Consensus 211 ~~~~i~~~~~~~-------~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~-------~~~------------ 263 (324)
.+..++.|..+. ..++++|+.+|. +|||+|+|++. ++|++|++|||..+ |..
T Consensus 535 ~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~ 613 (693)
T PTZ00049 535 ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNIT 613 (693)
T ss_pred cceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccc
Confidence 123455666653 146888999998 79999999998 68999999999852 532
Q ss_pred ---CCCeEEEEeeecccC-CCc--cEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceee
Q 047793 264 ---ELDHGVTAVGYGATA-NGT--KYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSYPT 323 (324)
Q Consensus 264 ---~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 323 (324)
..+|||+|||||.+. +|. +|||||||||++||++|||||.|+.+ .|||++.++|+.
T Consensus 614 G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N----~CGIEs~a~~~~ 675 (693)
T PTZ00049 614 GWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN----FSGIESQSLFIE 675 (693)
T ss_pred ccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCC----ccCCccceeEEe
Confidence 368999999999752 453 79999999999999999999999973 599999999865
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=3e-54 Score=416.49 Aligned_cols=207 Identities=26% Similarity=0.499 Sum_probs=174.5
Q ss_pred CCCCceeecccCC---CCCcccCCCC---CcchHHHHHHHHHhHHHHhhcC------CCccCCHHHHhhhcCCCCCCCCC
Q 047793 104 IDVPATMDWRKNG---AVTPIKNQGP---CGSCWAFSAVAATEGITQLTTG------KLISLSEQELVSCDTSGVDHGCE 171 (324)
Q Consensus 104 ~~lP~~~Dwr~~g---~v~pV~dQg~---cGsCwAfA~~~~le~~~~~~~~------~~~~lS~q~l~~c~~~~~~~gc~ 171 (324)
.+||++||||+.| +|+||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+.. +.||+
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~--n~GCd 280 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY--GQGCA 280 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC--CCCCC
Confidence 4799999999987 7999999999 9999999999999999999874 4678999999999864 78999
Q ss_pred CCchHHHHHHHHHhCCcCCCCcc--cccCCCC---cccCCCCCCceEEEee------eEEcCCCcHHHHHHHHH-cCCeE
Q 047793 172 GGEMEDAFKFIIHNDGITTEANY--PYQAVDG---TCNKTNEASHVAKIKG------YETVPANSEEALLKAVA-NQPVA 239 (324)
Q Consensus 172 gG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~c~~~~~~~~~~~i~~------~~~~~~~~~~~i~~~l~-~gPV~ 239 (324)
||++..|++|+.++ |+++|++| ||.+.++ .|.... ....+.++. |..+. .++++|+.+|+ +|||+
T Consensus 281 GG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~-~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVs 357 (548)
T PTZ00364 281 GGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRR-PSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVP 357 (548)
T ss_pred CCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCc-ccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeE
Confidence 99999999999755 99999999 9987655 486542 333334443 33333 46788999998 79999
Q ss_pred EEEeccCCccccccCCeeeCC---------C-----------CCCCCeEEEEeeecccCCCccEEEEEcCCCC--CCCCC
Q 047793 240 VSIDASGSAFQFYSSGVFTGD---------C-----------GTELDHGVTAVGYGATANGTKYWLVKNSWGT--SWGEE 297 (324)
Q Consensus 240 v~~~~~~~~f~~y~~Giy~~~---------~-----------~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~--~WG~~ 297 (324)
|+|++. .+|+.|++|||... | ...++|||+|||||.+++|.+|||||||||+ +|||+
T Consensus 358 VaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 358 ASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccC
Confidence 999998 68999999998621 1 1357999999999986578999999999999 99999
Q ss_pred ceEEEEecCCCCCCCcccccccc
Q 047793 298 GYIRMKRDIDAKEGLCGIAMDSS 320 (324)
Q Consensus 298 Gy~~i~~~~~~~~~~Cgi~~~~~ 320 (324)
|||||+|+.| .|||++.++
T Consensus 437 GYfRI~RG~N----~CGIes~~v 455 (548)
T PTZ00364 437 GTRKIARGVN----AYNIESEVV 455 (548)
T ss_pred CeEEEEcCCC----cccccceee
Confidence 9999999974 599999987
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=6.1e-51 Score=346.24 Aligned_cols=168 Identities=56% Similarity=1.113 Sum_probs=148.6
Q ss_pred CCceeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHh
Q 047793 106 VPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHN 185 (324)
Q Consensus 106 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~~~~~ 185 (324)
||++||||+.++++||+|||.||+|||||+++++|++++++++..++||+|+|++|... .+.+|.||.+..|++|+.++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~ 79 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKN 79 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999988999999999999875 45699999999999999865
Q ss_pred CCcCCCCcccccCCCCcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHHcCCeEEEEeccCCccccccCCeeeCC-CCC-
Q 047793 186 DGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQPVAVSIDASGSAFQFYSSGVFTGD-CGT- 263 (324)
Q Consensus 186 ~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~-~~~- 263 (324)
.|+++|++|||.. ++.+.+. +|+.|++|||+.+ |..
T Consensus 80 ~Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~ 117 (174)
T smart00645 80 GGLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSG 117 (174)
T ss_pred CCcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCC
Confidence 5999999999964 4555554 5999999999985 764
Q ss_pred CCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccc
Q 047793 264 ELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDS 319 (324)
Q Consensus 264 ~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~ 319 (324)
.++|+|+|||||.+.+|++|||||||||+.||++|||||+++.. +.|||+...
T Consensus 118 ~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~~ 170 (174)
T smart00645 118 TLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEASV 170 (174)
T ss_pred cccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceeee
Confidence 47999999999976468899999999999999999999999862 359995543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=1e-47 Score=338.53 Aligned_cols=195 Identities=34% Similarity=0.576 Sum_probs=167.8
Q ss_pred eeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcC--CCccCCHHHHhhhcCCCC---CCCCCCCchHHHHH-HH
Q 047793 109 TMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTG--KLISLSEQELVSCDTSGV---DHGCEGGEMEDAFK-FI 182 (324)
Q Consensus 109 ~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~~c~~~~~---~~gc~gG~~~~a~~-~~ 182 (324)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.+ ..++||+|+|++|..... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999987 788999999999987532 36999999999998 66
Q ss_pred HHhCCcCCCCcccccCCCCcccCC---CCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCccccccCCeee
Q 047793 183 IHNDGITTEANYPYQAVDGTCNKT---NEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFT 258 (324)
Q Consensus 183 ~~~~Gi~~e~~yPY~~~~~~c~~~---~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~ 258 (324)
. ..|+++|.+|||......|... .......++..|..+...++++||++|. .|||+++|.+. ..|..|++|++.
T Consensus 80 ~-~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 A-LKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred H-HcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 5 5699999999999877776532 1234567889999888677899999998 69999999998 789999999873
Q ss_pred -----CC--CCCCCCeEEEEeeecccC-CCccEEEEEcCCCCCCCCCceEEEEecC
Q 047793 259 -----GD--CGTELDHGVTAVGYGATA-NGTKYWLVKNSWGTSWGEEGYIRMKRDI 306 (324)
Q Consensus 259 -----~~--~~~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~ 306 (324)
.. +...++|||+|||||++. .+++|||||||||+.||++||+||+++.
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 22 234689999999999873 2789999999999999999999999986
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=373.57 Aligned_cols=202 Identities=24% Similarity=0.467 Sum_probs=160.6
Q ss_pred CCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCCCCCCCCCchH-HHHHHHHHhCCcCCCCcccc
Q 047793 118 VTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGCEGGEME-DAFKFIIHNDGITTEANYPY 196 (324)
Q Consensus 118 v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~gc~gG~~~-~a~~~~~~~~Gi~~e~~yPY 196 (324)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+...++.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 47999999999999999999999999999999999999999999876567899999754 55688877756899999999
Q ss_pred cC--CCCcccCCCC-----------------CCceEEEeeeEEcCCC----c----HHHHHHHHH-cCCeEEEEeccCCc
Q 047793 197 QA--VDGTCNKTNE-----------------ASHVAKIKGYETVPAN----S----EEALLKAVA-NQPVAVSIDASGSA 248 (324)
Q Consensus 197 ~~--~~~~c~~~~~-----------------~~~~~~i~~~~~~~~~----~----~~~i~~~l~-~gPV~v~~~~~~~~ 248 (324)
.. ..+.|+.... ......+++|..+... + ++.|+.+|+ +|||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567874311 0112334566655421 1 467899998 69999999986 5
Q ss_pred cccc-cCCeeeCC-CCC-CCCeEEEEeeeccc----CCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccce
Q 047793 249 FQFY-SSGVFTGD-CGT-ELDHGVTAVGYGAT----ANGTKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSSY 321 (324)
Q Consensus 249 f~~y-~~Giy~~~-~~~-~~~Hav~iVGyg~~----~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~ 321 (324)
|+.| .+|||... |+. .++|||+|||||.+ ..+++|||||||||+.||++|||||.|... +.|||+....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~---n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP---SHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC---CCCccchheee
Confidence 8888 48987665 874 57999999999974 236789999999999999999999998532 45999887777
Q ss_pred eeC
Q 047793 322 PTA 324 (324)
Q Consensus 322 p~~ 324 (324)
|++
T Consensus 779 ~~f 781 (1004)
T PTZ00462 779 VIF 781 (1004)
T ss_pred eeE
Confidence 763
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=4.8e-45 Score=320.92 Aligned_cols=262 Identities=26% Similarity=0.524 Sum_probs=205.9
Q ss_pred HHHHHHhcCCCCCeEEE-cccCCCCCHHHHHHhhcCccCCCCCCCCCCCcc--cccCCCCCCceeecccC--CCCCcccC
Q 047793 49 EFIESLNAAGNKPYKLS-INEFADQTNQEFKAFRNGYRRPDGLTSRKGTSF--KYENVIDVPATMDWRKN--GAVTPIKN 123 (324)
Q Consensus 49 ~~I~~~N~~~~~s~~~g-~N~fsd~t~~E~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lP~~~Dwr~~--g~v~pV~d 123 (324)
.+|+++|. ++.+|+++ +.+|..||.++-.+.+++..+|.... ...... ......+||+.|+-+++ +++.||.|
T Consensus 151 d~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv-~nMNEi~~~l~p~~~LPE~F~As~KWp~liH~plD 228 (470)
T KOG1544|consen 151 DMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSV-MNMNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLD 228 (470)
T ss_pred HHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhh-hhHHhHhhccCcccccchhhhhhhcCCccccCccc
Confidence 57899998 88899987 55899999999888888877765421 111111 11223589999999997 89999999
Q ss_pred CCCCcchHHHHHHHHHhHHHHhhcCC--CccCCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHhCCcCCCCcccccCC--
Q 047793 124 QGPCGSCWAFSAVAATEGITQLTTGK--LISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANYPYQAV-- 199 (324)
Q Consensus 124 Qg~cGsCwAfA~~~~le~~~~~~~~~--~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~-- 199 (324)
||+|++.|||+++++...+++|.... ...||+|+|++|... ...||.||....|+=|+.+. |++...||||...
T Consensus 229 QgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~ 306 (470)
T KOG1544|consen 229 QGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQA 306 (470)
T ss_pred cCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecc-cccccccccccCCCC
Confidence 99999999999999999999998754 357999999999865 46899999999999998755 9999999999752
Q ss_pred --CCcc------------------cCCCC-CCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCccccccCCee
Q 047793 200 --DGTC------------------NKTNE-ASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVF 257 (324)
Q Consensus 200 --~~~c------------------~~~~~-~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy 257 (324)
.+.| +.... ....++++.-..|. .++++|++.|+ +|||.+.|.|. ++|.+|++|||
T Consensus 307 ~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY 384 (470)
T KOG1544|consen 307 GPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGGIY 384 (470)
T ss_pred CCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhcccee
Confidence 2233 22211 11334444444555 56777777777 89999999998 89999999999
Q ss_pred eCCCC---------CCCCeEEEEeeecccC--CC--ccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccc
Q 047793 258 TGDCG---------TELDHGVTAVGYGATA--NG--TKYWLVKNSWGTSWGEEGYIRMKRDIDAKEGLCGIAMDSS 320 (324)
Q Consensus 258 ~~~~~---------~~~~Hav~iVGyg~~~--~g--~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~ 320 (324)
.+... ..+.|+|.|.|||++. .| .+|||..||||+.|||+|||||.|+.| .|-|+++..
T Consensus 385 ~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN----ecdIEsfvI 456 (470)
T KOG1544|consen 385 SHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN----ECDIESFVI 456 (470)
T ss_pred eccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc----chhhhHhhh
Confidence 98622 2578999999999862 23 479999999999999999999999985 499998754
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-32 Score=243.97 Aligned_cols=199 Identities=24% Similarity=0.414 Sum_probs=135.2
Q ss_pred CCCceeecccCCCCCcccCCCCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCCCCCC-----CCCchHHHH
Q 047793 105 DVPATMDWRKNGAVTPIKNQGPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGVDHGC-----EGGEMEDAF 179 (324)
Q Consensus 105 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~gc-----~gG~~~~a~ 179 (324)
.+|+.||||+.|.|+||||||.||+|||||+++++|+.+.-.. ...+|+..+..-.......+| +||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 5899999999999999999999999999999999999876443 445565544432221112222 377777777
Q ss_pred HHHHHhCCcCCCCcccccCCCCcccCCCCCCceEEEeeeEEcCC----CcHHHHHHHHH-cCCeEEEEeccCCccccccC
Q 047793 180 KFIIHNDGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPA----NSEEALLKAVA-NQPVAVSIDASGSAFQFYSS 254 (324)
Q Consensus 180 ~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~~~~----~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~ 254 (324)
.|+.++.|.+.+.+-||....-.|....+ ...++..-..++. -+.-.|++++. .|-+...|.+....+....-
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~~p--~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~ 253 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTNLP--VTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICI 253 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcCCc--hhhccccceecccchhhhcccchHHHHhhhccccceeEEeccccccccc
Confidence 78888889999999999876666654321 1222233333331 12223566666 56555343333112222222
Q ss_pred CeeeCCCCCCCCeEEEEeeecccC---------CCccEEEEEcCCCCCCCCCceEEEEecCC
Q 047793 255 GVFTGDCGTELDHGVTAVGYGATA---------NGTKYWLVKNSWGTSWGEEGYIRMKRDID 307 (324)
Q Consensus 255 Giy~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~ 307 (324)
+.|........+|||+|||||+.. .|.++||||||||+.||++|||||+|..-
T Consensus 254 ~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya 315 (372)
T COG4870 254 PYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYA 315 (372)
T ss_pred CCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeec
Confidence 333332336789999999999862 46789999999999999999999999874
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=1.9e-24 Score=205.23 Aligned_cols=181 Identities=24% Similarity=0.412 Sum_probs=128.6
Q ss_pred CcccCCCCCcchHHHHHHHHHhHHHHhh-cCCCccCCHHHHhhhcC----------------CC----------CCCCCC
Q 047793 119 TPIKNQGPCGSCWAFSAVAATEGITQLT-TGKLISLSEQELVSCDT----------------SG----------VDHGCE 171 (324)
Q Consensus 119 ~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~q~l~~c~~----------------~~----------~~~gc~ 171 (324)
.||+||+.-|.||.||+...|++.+..+ +.+.+.||+.+++.-+. .. .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999987764 55679999998875211 00 134578
Q ss_pred CCchHHHHHHHHHhCCcCCCCcccccCC---------------------------CCc----------------------
Q 047793 172 GGEMEDAFKFIIHNDGITTEANYPYQAV---------------------------DGT---------------------- 202 (324)
Q Consensus 172 gG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~~---------------------- 202 (324)
||....++..+. ++|+++.+.||-+.. .+.
T Consensus 135 GGqw~m~~~li~-KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIE-KYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHH-HcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876 669999999984310 000
Q ss_pred cc---CCC-----------------------------------------CC--C---ceEEE-----------eeeEEcC
Q 047793 203 CN---KTN-----------------------------------------EA--S---HVAKI-----------KGYETVP 222 (324)
Q Consensus 203 c~---~~~-----------------------------------------~~--~---~~~~i-----------~~~~~~~ 222 (324)
|- +.. +. . ..+.+ ..|..++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 00 000 00 0 00000 1222332
Q ss_pred CCcHHHHH----HHHHc-CCeEEEEeccCCccccccCCeeeCC----------------------CCCCCCeEEEEeeec
Q 047793 223 ANSEEALL----KAVAN-QPVAVSIDASGSAFQFYSSGVFTGD----------------------CGTELDHGVTAVGYG 275 (324)
Q Consensus 223 ~~~~~~i~----~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~----------------------~~~~~~Hav~iVGyg 275 (324)
.+.|+ ++|.. +||.+++++. .|..|++||++.. +.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 44444 46664 6999999997 4678999999653 234568999999999
Q ss_pred ccCCCc-cEEEEEcCCCCCCCCCceEEEEec
Q 047793 276 ATANGT-KYWLVKNSWGTSWGEEGYIRMKRD 305 (324)
Q Consensus 276 ~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 305 (324)
.+.+|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 876676 699999999999999999999865
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.74 E-value=6.7e-18 Score=116.92 Aligned_cols=58 Identities=53% Similarity=0.890 Sum_probs=51.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHHH
Q 047793 20 HEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQEF 77 (324)
Q Consensus 20 f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~ 77 (324)
|++|+++|+|.|.+.+|+.+|+.+|++|++.|++||+++..+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999997688899999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.73 E-value=5e-17 Score=154.76 Aligned_cols=180 Identities=23% Similarity=0.408 Sum_probs=106.8
Q ss_pred CcccCCCCCcchHHHHHHHHHhHHHHhhcC-CCccCCHHHHhh----------------hcCCC----------CCCCCC
Q 047793 119 TPIKNQGPCGSCWAFSAVAATEGITQLTTG-KLISLSEQELVS----------------CDTSG----------VDHGCE 171 (324)
Q Consensus 119 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~----------------c~~~~----------~~~gc~ 171 (324)
.||.||..-|.||.||+...++..+..+.+ +.+.||+.+++. +.... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999887765 678999998762 21111 123468
Q ss_pred CCchHHHHHHHHHhCCcCCCCcccccCC---------------------------CC-----------------------
Q 047793 172 GGEMEDAFKFIIHNDGITTEANYPYQAV---------------------------DG----------------------- 201 (324)
Q Consensus 172 gG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~----------------------- 201 (324)
||....+...+. ++||++.+.||-... .+
T Consensus 136 GGqw~~~~nli~-KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIK-KYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHH-HH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHH-HcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888776 569999999985320 00
Q ss_pred ---cccCCC------CCC---------------------------------------ceEEE-----------eeeEEcC
Q 047793 202 ---TCNKTN------EAS---------------------------------------HVAKI-----------KGYETVP 222 (324)
Q Consensus 202 ---~c~~~~------~~~---------------------------------------~~~~i-----------~~~~~~~ 222 (324)
.++..- ... ..+.+ ..|..+|
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 000000 000 00000 0122222
Q ss_pred CCcHHHHHH----HHHcC-CeEEEEeccCCccccccCCeeeCCC----------------------CCCCCeEEEEeeec
Q 047793 223 ANSEEALLK----AVANQ-PVAVSIDASGSAFQFYSSGVFTGDC----------------------GTELDHGVTAVGYG 275 (324)
Q Consensus 223 ~~~~~~i~~----~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~----------------------~~~~~Hav~iVGyg 275 (324)
.+.|++ +|..| ||-.+-+|. . +...+.||.+... .+..+|||+|||.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 444544 45566 999999998 3 4466889876542 02358999999999
Q ss_pred ccCCCc-cEEEEEcCCCCCCCCCceEEEEe
Q 047793 276 ATANGT-KYWLVKNSWGTSWGEEGYIRMKR 304 (324)
Q Consensus 276 ~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~ 304 (324)
.+.+|+ .+|+|+||||+..|.+||+.|+.
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 976777 59999999999999999999984
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.59 E-value=1.9e-15 Score=104.19 Aligned_cols=57 Identities=51% Similarity=0.909 Sum_probs=53.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEcccCCCCCHHH
Q 047793 20 HEQWMSKYGKVYKNPEEKEKRFRIFKDNVEFIESLNAAGNKPYKLSINEFADQTNQE 76 (324)
Q Consensus 20 f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~s~~~g~N~fsd~t~~E 76 (324)
|.+|+++|+|.|.+.+|...|+.+|.+|++.|+.||+.+..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 688999999999999999999999999999999999877789999999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.90 E-value=1.1e-08 Score=92.12 Aligned_cols=76 Identities=26% Similarity=0.462 Sum_probs=55.4
Q ss_pred HHHHHHHH----HcC-CeEEEEeccCCccccccCCeeeCC----C---C---------------CCCCeEEEEeeecccC
Q 047793 226 EEALLKAV----ANQ-PVAVSIDASGSAFQFYSSGVFTGD----C---G---------------TELDHGVTAVGYGATA 278 (324)
Q Consensus 226 ~~~i~~~l----~~g-PV~v~~~~~~~~f~~y~~Giy~~~----~---~---------------~~~~Hav~iVGyg~~~ 278 (324)
.+.++++. ..| ||-.+-++. -+..-+.||.+.. . + +-..|||+|.|.+.++
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 45555543 245 888888886 4667777875432 0 0 1136999999999887
Q ss_pred CCcc-EEEEEcCCCCCCCCCceEEEE
Q 047793 279 NGTK-YWLVKNSWGTSWGEEGYIRMK 303 (324)
Q Consensus 279 ~g~~-ywivkNSWG~~WG~~Gy~~i~ 303 (324)
+|.+ -|.|.||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 7654 699999999999999999876
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00021 Score=64.81 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=54.6
Q ss_pred CcccCCCCCcchHHHHHHHHHhHHHHhhcC-CCccCCHHHHhhhc--------------------CC--------CCCCC
Q 047793 119 TPIKNQGPCGSCWAFSAVAATEGITQLTTG-KLISLSEQELVSCD--------------------TS--------GVDHG 169 (324)
Q Consensus 119 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~~c~--------------------~~--------~~~~g 169 (324)
+||.||..-|-||.|+.+..+---+..+-+ ....||..+|+--+ .. -.+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 799999999999999999987654444322 35678988875321 11 01233
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCcccc
Q 047793 170 CEGGEMEDAFKFIIHNDGITTEANYPY 196 (324)
Q Consensus 170 c~gG~~~~a~~~~~~~~Gi~~e~~yPY 196 (324)
-+||....-+..++ .+|+.+.+|||-
T Consensus 143 ~DGGqw~MfvNlVk-KYGviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVK-KYGVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHHH-HhCCCcHHhccc
Confidence 46888877777665 669999999974
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.19 E-value=0.0055 Score=49.09 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=59.2
Q ss_pred cccCC--CCCcchHHHHHHHHHhHHHHhhcCCCccCCHHHHhhhcCCCC----C--------CCCCCCchHHHHHHHHHh
Q 047793 120 PIKNQ--GPCGSCWAFSAVAATEGITQLTTGKLISLSEQELVSCDTSGV----D--------HGCEGGEMEDAFKFIIHN 185 (324)
Q Consensus 120 pV~dQ--g~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~----~--------~gc~gG~~~~a~~~~~~~ 185 (324)
|...| ..-..|+..|++-++... +. ..++.+|.+-..... + .....|.....+..+.+.
T Consensus 4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T PF13529_consen 4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK 76 (144)
T ss_dssp -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence 34456 455679999998888765 22 578888877544211 0 011223333344333333
Q ss_pred CCcCCCCcccccCCCCcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHHcC-CeEEEEeccCCccccccCCeeeCCCCCC
Q 047793 186 DGITTEANYPYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVANQ-PVAVSIDASGSAFQFYSSGVFTGDCGTE 264 (324)
Q Consensus 186 ~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~ 264 (324)
+|. ........+.+.|++.|.+| ||.+.+....... .+..+. ...
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~ 122 (144)
T PF13529_consen 77 YGY----------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTY 122 (144)
T ss_dssp H-T----------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-T
T ss_pred cCc----------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCc
Confidence 343 00011224678899999976 9999997431111 111111 235
Q ss_pred CCeEEEEeeecccCCCccEEEEEcCC
Q 047793 265 LDHGVTAVGYGATANGTKYWLVKNSW 290 (324)
Q Consensus 265 ~~Hav~iVGyg~~~~g~~ywivkNSW 290 (324)
.+|.|+|+||+.+ + +++|-.+|
T Consensus 123 ~~H~vvi~Gy~~~--~--~~~v~DP~ 144 (144)
T PF13529_consen 123 GGHYVVIIGYDED--G--YVYVNDPW 144 (144)
T ss_dssp TEEEEEEEEE-SS--E---EEEE-TT
T ss_pred CCEEEEEEEEeCC--C--EEEEeCCC
Confidence 7899999999974 2 78888777
No 25
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.54 E-value=0.0033 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCeEEEcccCCCCCHHHHHHhhcCcc
Q 047793 48 VEFIESLNAAGNKPYKLSINEFADQTNQEFKAFRNGYR 85 (324)
Q Consensus 48 ~~~I~~~N~~~~~s~~~g~N~fsd~t~~E~~~~~~~~~ 85 (324)
-++|+.+|+. +.+|++|.| |.+.|.++++.+ +|..
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 3689999996 789999999 899999999876 4543
No 26
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=95.51 E-value=0.14 Score=42.86 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=65.3
Q ss_pred CCCCCcchHHHHHHHHHhHHHHhhc--------CCCccCCHHHHhhhcCCCCCCCCCCCchHHHHHHHHHhCCcCCCCcc
Q 047793 123 NQGPCGSCWAFSAVAATEGITQLTT--------GKLISLSEQELVSCDTSGVDHGCEGGEMEDAFKFIIHNDGITTEANY 194 (324)
Q Consensus 123 dQg~cGsCwAfA~~~~le~~~~~~~--------~~~~~lS~q~l~~c~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~y 194 (324)
.||.-+=|-+||.++.|-....... .-...+|+++|..+.. .+...++|.... |..+.
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~-g~~~~--- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQ-GRNPQ--- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHT-TEEEE---
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHc-Ccchh---
Confidence 5899999999999998866432211 0123466666655432 344666665432 32211
Q ss_pred cccCCCCcccCCCCCCceEEEeeeEEcCCCcHHHHHHHHH-cCCeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEee
Q 047793 195 PYQAVDGTCNKTNEASHVAKIKGYETVPANSEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVG 273 (324)
Q Consensus 195 PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVG 273 (324)
-.... .+.+++++.+. +-|+.+........ .....+|||+|||
T Consensus 84 ----------------------~~n~~--~s~~eV~~~~~~nk~i~i~~~~v~~~------------~~~~~gHAlavvG 127 (175)
T PF05543_consen 84 ----------------------YNNRM--PSFDEVKKLIDNNKGIAILADRVEQT------------NGPHAGHALAVVG 127 (175)
T ss_dssp ----------------------EECS-----HHHHHHHHHTT-EEEEEEEETTSC------------TTB--EEEEEEEE
T ss_pred ----------------------HhcCC--CCHHHHHHHHHcCCCeEEEecccccC------------CCCccceeEEEEe
Confidence 00011 25678888888 46888766644211 2245689999999
Q ss_pred ecccCCCccEEEEEcCCC
Q 047793 274 YGATANGTKYWLVKNSWG 291 (324)
Q Consensus 274 yg~~~~g~~ywivkNSWG 291 (324)
|-.-.+|.++.++=|=|-
T Consensus 128 ya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEETTSEEEEEEE-TT-
T ss_pred eeecCCCCeEEEEeCCcc
Confidence 987557889999988774
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=91.74 E-value=0.47 Score=43.79 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=36.7
Q ss_pred HHHHHHHHHcC-CeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEeeecccCCCccEEEEEc
Q 047793 226 EEALLKAVANQ-PVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKN 288 (324)
Q Consensus 226 ~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkN 288 (324)
.+.|+++|.+| ||.+.++.+ +..|...-| .....+|.|+|+||+++ +..+.++-.
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~---~~~~~~H~i~v~G~d~~--~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY---KKHHADHYIVVYGYDEE--EDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc---ccccCCcEEEEEEEeCC--CCEEEEEcC
Confidence 45678888877 999998877 444433322 12346899999999975 345666533
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.35 E-value=2 Score=36.12 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=36.0
Q ss_pred cCCCcHHHHHHHHHcC-CeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEeeecccCCCccEEEEEcCCC
Q 047793 221 VPANSEEALLKAVANQ-PVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKNSWG 291 (324)
Q Consensus 221 ~~~~~~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 291 (324)
+...+..+|+..|..| ||.+-.....+ ..-|+|+|.|||+. ++..-++||
T Consensus 118 ~tGksl~~ik~ql~kg~PV~iw~T~~~~----------------~s~H~v~itgyDk~-----n~yynDpyG 168 (195)
T COG4990 118 LTGKSLSDIKGQLLKGRPVVIWVTNFHS----------------YSIHSVLITGYDKY-----NIYYNDPYG 168 (195)
T ss_pred CcCCcHHHHHHHHhcCCcEEEEEecccc----------------cceeeeEeeccccc-----ceEeccccc
Confidence 4457889999999965 98876544321 23499999999964 466667775
No 29
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=82.66 E-value=5.3 Score=34.77 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=35.3
Q ss_pred cHHHHHHHHHc-CCeEEEEeccCCccc--cccCCeeeC---C--C--CCCCCeEEEEeeecccCCCccEEEEEc
Q 047793 225 SEEALLKAVAN-QPVAVSIDASGSAFQ--FYSSGVFTG---D--C--GTELDHGVTAVGYGATANGTKYWLVKN 288 (324)
Q Consensus 225 ~~~~i~~~l~~-gPV~v~~~~~~~~f~--~y~~Giy~~---~--~--~~~~~Hav~iVGyg~~~~g~~ywivkN 288 (324)
+.++|...|.. ||+.+-++..- .. .-+...... . + ....+|-|+|+||+... +-++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~--L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~---~~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASL--LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAAT---KEFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEcccc--ccChhhcccccccccccccCCCCCccEEEEEEEeecCCC---CeEEEeC
Confidence 57888899984 57777776652 11 012222211 1 1 23679999999999752 3355565
No 30
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=75.73 E-value=45 Score=27.66 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=28.0
Q ss_pred cHHHHHHHHH-cCCeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEeeeccc
Q 047793 225 SEEALLKAVA-NQPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGAT 277 (324)
Q Consensus 225 ~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~ 277 (324)
+.+.+...|. +||+-++.....+ .-..|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~---------------~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGD---------------SWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCC---------------cceeeEEEEEeecCC
Confidence 5678888888 7999998654421 123699999998865
No 31
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=75.30 E-value=10 Score=29.91 Aligned_cols=44 Identities=27% Similarity=0.375 Sum_probs=28.9
Q ss_pred HHHHHHcC-CeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEeeecccCCCccEEEEEcCC
Q 047793 229 LLKAVANQ-PVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKNSW 290 (324)
Q Consensus 229 i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 290 (324)
+++.+..| ||.+.+... ......+|.|+|+||+.+ +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~~----~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDRK----GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcCC----CCEEEECCC
Confidence 66777754 999887651 011246899999999821 225566765
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=72.86 E-value=12 Score=34.75 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=23.6
Q ss_pred CCCeEEEEeeecccCC--CccEEEEEcCCCC
Q 047793 264 ELDHGVTAVGYGATAN--GTKYWLVKNSWGT 292 (324)
Q Consensus 264 ~~~Hav~iVGyg~~~~--g~~ywivkNSWG~ 292 (324)
..+||-.|++.... + +.+...+||-||.
T Consensus 234 ~~~HaY~Vl~~~~~-~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVREV-QEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEEEE-ccCceEEEEecCCccC
Confidence 35899999999875 3 7889999999994
No 33
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=53.65 E-value=64 Score=27.49 Aligned_cols=51 Identities=27% Similarity=0.551 Sum_probs=29.6
Q ss_pred HHHHHHHHc-CCeEEEEeccCCccccccCCeeeCCCCCCCCeEEEEeeecccCCCccEEEEEcCCCCCCCCCceEE
Q 047793 227 EALLKAVAN-QPVAVSIDASGSAFQFYSSGVFTGDCGTELDHGVTAVGYGATANGTKYWLVKNSWGTSWGEEGYIR 301 (324)
Q Consensus 227 ~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~ 301 (324)
+.|+..|.+ .||.+...... . +||.+|=||..+ .||-+==.||-. .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~~-~-----------------GHawViDGy~~~----~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSKS-G-----------------GHAWVIDGYDSD----GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEETT-E-----------------EEEEEEEEEESS----SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecCC-C-----------------CeEEEEcCccCC----CeEEEeeCccCC--CCCccC
Confidence 456777774 59886654331 1 899999999643 577653333322 568875
No 34
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.71 E-value=76 Score=22.37 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCccCChHHHHHHHHHHHHHHH
Q 047793 18 EKHEQWMSKYGKVYKNPEEKEKRFRIFKDNVE 49 (324)
Q Consensus 18 ~~f~~~~~~~~k~Y~~~~e~~~r~~~f~~n~~ 49 (324)
..|++|+..+.+.-.++ |...|..-|++-++
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lR 59 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLR 59 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHH
Confidence 46999999999998776 66677777776544
No 35
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=35.19 E-value=55 Score=30.40 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=21.7
Q ss_pred CCCeEEEEeeecccCCCcc--EEEEEcCCC
Q 047793 264 ELDHGVTAVGYGATANGTK--YWLVKNSWG 291 (324)
Q Consensus 264 ~~~Hav~iVGyg~~~~g~~--ywivkNSWG 291 (324)
..+||-.|++...- ++.+ -..+||-||
T Consensus 226 v~~HaYsVl~v~~~-~~~~~~Ll~lrNPWg 254 (318)
T smart00230 226 VKGHAYSVTDVREV-QGRRQELLRLRNPWG 254 (318)
T ss_pred ccCccEEEEEEEEE-ecCCeEEEEEECCCC
Confidence 45899999998764 3445 899999998
No 36
>PF15588 Imm7: Immunity protein 7
Probab=27.35 E-value=1.9e+02 Score=22.44 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=25.6
Q ss_pred EEEEeeecccC-CCccEEEEEcCC-----CCCCCCCceEEEEe
Q 047793 268 GVTAVGYGATA-NGTKYWLVKNSW-----GTSWGEEGYIRMKR 304 (324)
Q Consensus 268 av~iVGyg~~~-~g~~ywivkNSW-----G~~WG~~Gy~~i~~ 304 (324)
-|++||+.+++ +.+.|.|++.+- -..=|.+||+ +..
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~-~e~ 58 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY-TEC 58 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE-EEE
Confidence 38999999875 456799999964 4444568886 444
No 37
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=23.04 E-value=1e+02 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=18.5
Q ss_pred CeeeCCCCCCCCeEEEEeeeccc
Q 047793 255 GVFTGDCGTELDHGVTAVGYGAT 277 (324)
Q Consensus 255 Giy~~~~~~~~~Hav~iVGyg~~ 277 (324)
.....||.+..+-+|.|=||+.+
T Consensus 27 ~tlsIPCksdpdlcmQLDgWDe~ 49 (80)
T PF07351_consen 27 DTLSIPCKSDPDLCMQLDGWDEH 49 (80)
T ss_pred CeEEeecCCChhheeEecccccC
Confidence 35566788888899999999876
No 38
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=21.71 E-value=2.6e+02 Score=18.69 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEEEeeecccC-CCccEEEEE-cCCC---CCCCCCceEEEE
Q 047793 268 GVTAVGYGATA-NGTKYWLVK-NSWG---TSWGEEGYIRMK 303 (324)
Q Consensus 268 av~iVGyg~~~-~g~~ywivk-NSWG---~~WG~~Gy~~i~ 303 (324)
-++++|+.... ....+-++| |+=| ++||.+|..++.
T Consensus 13 kIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d 53 (55)
T TIGR02608 13 KILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFD 53 (55)
T ss_pred cEEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEe
Confidence 36777776532 122333333 6666 488999988875
Done!