BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047795
         (314 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B7KIU2|IF2_CYAP7 Translation initiation factor IF-2 OS=Cyanothece sp. (strain PCC
           7424) GN=infB PE=3 SV=1
          Length = 1101

 Score = 34.3 bits (77), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 21/114 (18%)

Query: 4   QLSKTDSEASSLSQSSPIRSPRRPV---YYVQSPSRDSHDGEKTTNSFHSTPVLSPMGSP 60
           Q S   SE S ++ S  +R P RP      V SPS++     K+     + P++SP  + 
Sbjct: 194 QESAISSELSEVNVSKLLRPPVRPSEKPASVPSPSKEKE--AKSNEPTKAQPIISPKENK 251

Query: 61  PHSHSN-----SSLGPHSSRE----------SSSSASLKPQHHRKNE-RKSRKP 98
            HS  N     S + P  +++               SL PQ   K E R+ R+P
Sbjct: 252 SHSKENKLKLPSDIKPKPNKDKDRDGKKPDKEKDKKSLSPQPKVKRESREQREP 305


>sp|Q8VIM4|BSND_MOUSE Barttin OS=Mus musculus GN=Bsnd PE=1 SV=3
          Length = 307

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 28/120 (23%)

Query: 24  PRRPVYYVQSP-----SRDSHDGEKTTNSFHSTPVLSPMGSPPHS--HSNSSLGPHSSRE 76
           PR    ++++P       D ++GEK+ +   S+P + P GS P +  H +  +G      
Sbjct: 145 PRTAQAWMEAPVVVHRGSDENEGEKSHS--QSSPSVGPQGSAPLASFHDDLDVG------ 196

Query: 77  SSSSASLKP-----QHHRKNERKSRKP---WKEFDAIE-----EEGLLDGETIHRALSRR 123
           SS  +SL+P     + HR+    SR P   + +F  I+     E+ +LDG+    AL R+
Sbjct: 197 SSEGSSLQPSPNRDEPHRQVPWASRGPLDRFSDFALIDDTPTSEDTVLDGQAREAALPRK 256


>sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=Homo sapiens GN=RP1L1 PE=1
            SV=4
          Length = 2480

 Score = 31.2 bits (69), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 15/28 (53%)

Query: 51   TPVLSPMGSPPHSHSNSSLGPHSSRESS 78
            TP  SP G  PH    S  GP SSR SS
Sbjct: 2358 TPPPSPGGDTPHQRPGSQTGPSSSRASS 2385


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,218,468
Number of Sequences: 539616
Number of extensions: 4096933
Number of successful extensions: 15710
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 15167
Number of HSP's gapped (non-prelim): 466
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)