Query 047795
Match_columns 314
No_of_seqs 177 out of 616
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 8.9E-30 1.9E-34 232.6 25.0 169 133-314 47-216 (219)
2 PF03168 LEA_2: Late embryogen 99.4 2.3E-12 4.9E-17 101.8 7.6 99 188-293 1-100 (101)
3 smart00769 WHy Water Stress an 97.8 0.00012 2.6E-09 58.8 8.7 85 181-271 13-98 (100)
4 PF07092 DUF1356: Protein of u 97.7 0.0033 7.1E-08 58.5 17.0 60 180-240 121-181 (238)
5 COG5608 LEA14-like dessication 96.4 0.049 1.1E-06 47.5 11.1 58 183-241 50-108 (161)
6 PF12751 Vac7: Vacuolar segreg 94.7 0.11 2.3E-06 51.5 7.5 55 151-217 327-381 (387)
7 PLN03160 uncharacterized prote 91.2 7.7 0.00017 35.7 13.8 110 117-233 33-147 (219)
8 TIGR02588 conserved hypothetic 81.7 3.9 8.5E-05 34.5 5.6 53 130-197 9-63 (122)
9 KOG3950 Gamma/delta sarcoglyca 76.9 3.2 7E-05 39.0 4.0 22 181-202 104-127 (292)
10 PF15145 DUF4577: Domain of un 74.8 3.3 7.1E-05 34.5 3.1 29 121-149 59-87 (128)
11 COG1580 FliL Flagellar basal b 69.9 15 0.00033 32.3 6.4 25 125-149 19-43 (159)
12 PF14155 DUF4307: Domain of un 61.4 91 0.002 25.6 10.2 82 140-242 18-102 (112)
13 PHA02680 ORF090 IMV phosphoryl 61.0 4.6 9.9E-05 32.2 1.2 35 120-154 43-78 (91)
14 PHA02898 virion envelope prote 57.8 5.3 0.00011 31.9 1.1 34 121-154 43-78 (92)
15 COG4736 CcoQ Cbb3-type cytochr 57.5 5.2 0.00011 29.7 0.9 21 132-152 14-34 (60)
16 cd01324 cbb3_Oxidase_CcoQ Cyto 55.0 6.9 0.00015 27.6 1.2 25 128-152 11-35 (48)
17 PF09911 DUF2140: Uncharacteri 54.8 17 0.00036 32.7 3.9 29 125-153 3-31 (187)
18 PRK10893 lipopolysaccharide ex 53.9 14 0.0003 33.3 3.3 21 148-168 36-56 (192)
19 PF05545 FixQ: Cbb3-type cytoc 53.4 6.7 0.00015 27.4 0.9 21 132-152 14-34 (49)
20 PF08113 CoxIIa: Cytochrome c 52.0 7.5 0.00016 25.5 0.9 15 132-146 10-24 (34)
21 PF15012 DUF4519: Domain of un 51.1 16 0.00034 26.8 2.5 19 133-151 38-56 (56)
22 PRK06531 yajC preprotein trans 50.4 6.6 0.00014 32.7 0.6 15 140-154 12-26 (113)
23 PF04790 Sarcoglycan_1: Sarcog 50.2 8.6 0.00019 36.5 1.4 14 184-197 87-100 (264)
24 PF01102 Glycophorin_A: Glycop 46.6 7.9 0.00017 32.7 0.5 41 119-159 60-101 (122)
25 PRK05529 cell division protein 46.3 22 0.00047 33.3 3.5 56 152-210 58-135 (255)
26 PHA03048 IMV membrane protein; 43.9 13 0.00028 29.8 1.3 33 120-152 41-75 (93)
27 PRK14762 membrane protein; Pro 41.5 32 0.0007 21.2 2.4 18 127-144 10-27 (27)
28 PF04478 Mid2: Mid2 like cell 40.3 21 0.00047 31.3 2.2 44 133-202 60-103 (154)
29 PF12505 DUF3712: Protein of u 39.9 72 0.0016 26.3 5.3 25 183-208 100-124 (125)
30 PHA03049 IMV membrane protein; 39.5 15 0.00032 27.8 0.9 20 131-150 6-25 (68)
31 COG4698 Uncharacterized protei 39.5 24 0.00051 31.9 2.4 36 127-162 13-48 (197)
32 COG5353 Uncharacterized protei 38.4 18 0.0004 31.6 1.5 28 125-152 8-35 (161)
33 PF09624 DUF2393: Protein of u 37.4 1.2E+02 0.0027 25.5 6.5 30 187-217 66-95 (149)
34 PF14927 Neurensin: Neurensin 36.7 41 0.00088 29.1 3.3 31 125-156 44-75 (140)
35 TIGR02744 TrbI_Ftype type-F co 36.2 34 0.00075 28.5 2.7 31 127-157 6-36 (112)
36 PF15281 Consortin_C: Consorti 33.7 50 0.0011 27.4 3.3 25 125-149 55-79 (113)
37 PF07705 CARDB: CARDB; InterP 33.5 1.7E+02 0.0038 21.8 6.3 38 184-224 20-57 (101)
38 PF12321 DUF3634: Protein of u 33.5 19 0.00042 29.7 0.8 22 135-157 5-28 (108)
39 PF11395 DUF2873: Protein of u 33.1 21 0.00046 24.0 0.8 9 140-148 24-32 (43)
40 PF06024 DUF912: Nucleopolyhed 32.6 58 0.0013 26.2 3.5 24 126-149 64-88 (101)
41 PF05961 Chordopox_A13L: Chord 32.5 21 0.00045 27.1 0.8 20 132-151 7-26 (68)
42 PF06667 PspB: Phage shock pro 32.2 16 0.00035 28.3 0.1 19 130-148 6-24 (75)
43 KOG2927 Membrane component of 31.5 24 0.00053 34.9 1.3 16 97-112 158-174 (372)
44 PF08114 PMP1_2: ATPase proteo 31.2 23 0.0005 24.3 0.8 18 128-145 13-30 (43)
45 PRK13183 psbN photosystem II r 29.7 65 0.0014 22.7 2.8 21 131-151 13-33 (46)
46 PHA02650 hypothetical protein; 28.8 44 0.00096 26.2 2.0 14 133-146 57-70 (81)
47 PF15302 P33MONOX: P33 mono-ox 28.7 72 0.0016 30.4 3.8 23 41-63 152-174 (294)
48 CHL00020 psbN photosystem II p 28.6 66 0.0014 22.3 2.7 22 130-151 9-30 (43)
49 PF13473 Cupredoxin_1: Cupredo 28.0 40 0.00087 26.6 1.8 49 142-197 7-55 (104)
50 PF06092 DUF943: Enterobacteri 27.7 37 0.00081 29.9 1.7 17 136-152 14-30 (157)
51 PTZ00200 cysteine proteinase; 27.6 66 0.0014 32.9 3.7 25 125-149 45-69 (448)
52 PHA02681 ORF089 virion membran 27.6 20 0.00044 28.3 0.0 18 133-150 9-26 (92)
53 PRK12785 fliL flagellar basal 27.4 2.7E+02 0.0059 24.3 7.1 27 187-214 74-100 (166)
54 PF07787 DUF1625: Protein of u 26.9 46 0.001 30.8 2.3 11 140-150 238-248 (248)
55 PF10856 DUF2678: Protein of u 26.5 1E+02 0.0022 25.9 3.9 26 125-150 32-57 (118)
56 PF02009 Rifin_STEVOR: Rifin/s 26.2 26 0.00057 33.9 0.5 18 132-149 263-280 (299)
57 PF05767 Pox_A14: Poxvirus vir 26.0 35 0.00076 27.4 1.1 30 121-150 43-74 (92)
58 KOG0260 RNA polymerase II, lar 25.9 1.6E+02 0.0034 34.1 6.2 6 24-29 1510-1515(1605)
59 PF14654 Epiglycanin_C: Mucin, 25.9 68 0.0015 26.2 2.7 23 125-147 20-42 (106)
60 KOG1691 emp24/gp25L/p24 family 25.0 2.2E+02 0.0047 26.4 6.1 70 133-221 12-85 (210)
61 PF03100 CcmE: CcmE; InterPro 25.0 1.8E+02 0.004 24.3 5.4 14 133-146 15-28 (131)
62 PF02468 PsbN: Photosystem II 24.9 64 0.0014 22.4 2.1 20 132-151 11-30 (43)
63 PF09604 Potass_KdpF: F subuni 24.8 32 0.00069 21.1 0.5 20 133-152 5-24 (25)
64 PRK05886 yajC preprotein trans 24.5 25 0.00054 29.1 0.0 15 140-154 14-28 (109)
65 PHA02844 putative transmembran 24.5 68 0.0015 24.8 2.3 14 133-146 56-69 (75)
66 PF13396 PLDc_N: Phospholipase 24.2 83 0.0018 21.1 2.6 19 133-151 28-46 (46)
67 PRK07021 fliL flagellar basal 23.7 1.9E+02 0.0041 25.0 5.4 16 200-215 78-93 (162)
68 PF05568 ASFV_J13L: African sw 23.7 20 0.00044 31.3 -0.7 31 133-163 39-69 (189)
69 PF14828 Amnionless: Amnionles 23.6 47 0.001 33.8 1.8 29 127-155 341-369 (437)
70 PF14221 DUF4330: Domain of un 23.2 5.1E+02 0.011 22.7 15.2 29 120-149 10-38 (168)
71 KOG3927 Na+/K+ ATPase, beta su 23.1 38 0.00083 32.9 1.0 23 134-156 56-81 (300)
72 KOG0811 SNARE protein PEP12/VA 23.0 40 0.00086 32.2 1.0 17 133-149 252-268 (269)
73 PHA02819 hypothetical protein; 22.7 65 0.0014 24.7 1.9 13 134-146 55-67 (71)
74 PF11906 DUF3426: Protein of u 22.7 4.5E+02 0.0098 21.9 8.1 58 155-221 48-106 (149)
75 PF09677 TrbI_Ftype: Type-F co 22.6 79 0.0017 26.1 2.6 34 122-156 1-34 (111)
76 PF03189 Otopetrin: Otopetrin; 22.5 86 0.0019 31.9 3.4 30 125-155 238-268 (441)
77 PF08135 EPV_E5: Major transfo 22.2 42 0.00092 23.1 0.8 22 125-146 8-29 (44)
78 PF12606 RELT: Tumour necrosis 22.0 31 0.00066 24.7 0.1 30 129-158 5-34 (50)
79 PF10694 DUF2500: Protein of u 21.9 79 0.0017 25.7 2.5 32 133-164 8-44 (110)
80 PF03929 PepSY_TM: PepSY-assoc 21.8 93 0.002 19.3 2.2 13 133-145 15-27 (27)
81 PF14257 DUF4349: Domain of un 21.7 76 0.0016 29.5 2.6 14 136-149 249-262 (262)
82 PF06716 DUF1201: Protein of u 21.6 43 0.00093 23.7 0.7 14 131-144 13-26 (54)
83 PTZ00116 signal peptidase; Pro 21.2 6.2E+02 0.014 22.9 9.9 48 150-202 36-86 (185)
84 PHA03054 IMV membrane protein; 21.0 77 0.0017 24.3 2.0 11 135-145 58-68 (72)
85 PTZ00382 Variant-specific surf 21.0 63 0.0014 25.9 1.7 15 135-149 78-93 (96)
86 PF09753 Use1: Membrane fusion 20.9 65 0.0014 29.9 2.0 6 124-129 228-233 (251)
87 COG1589 FtsQ Cell division sep 20.7 99 0.0022 29.0 3.2 70 133-204 38-127 (269)
88 PRK13254 cytochrome c-type bio 20.4 5.5E+02 0.012 22.2 7.5 35 187-221 73-108 (148)
89 PHA02831 EEV host range protei 20.3 1.1E+02 0.0025 29.1 3.5 14 132-145 241-254 (268)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.97 E-value=8.9e-30 Score=232.62 Aligned_cols=169 Identities=9% Similarity=0.216 Sum_probs=136.1
Q ss_pred HHHHHHHHhheeeeeeeCCCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEEcCeeEEEEEC
Q 047795 133 FIVLFSMFSLILWGASKPQKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHVTSTPLDLYYS 212 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~ 212 (314)
+++|+++++.++|++|||+.|+|+|++++|++|++..+. .+...++++++++++++|||. ++|+|+++++.++|+
T Consensus 47 ~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~----~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~ 121 (219)
T PLN03160 47 LLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT----TLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYG 121 (219)
T ss_pred HHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC----CCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEEC
Confidence 455567777778999999999999999999999986521 122235566778899999999 899999999999999
Q ss_pred cEEEeeeccCcccccCCCeeEEEEEEEEeeeeccCCCCccccccccccccEEEEEEEEEEEEEEEEEeEEeCeEEEEEEe
Q 047795 213 QLTVATGTIRKFYQSRKSQRSVTVMMKGSHIPLYGGGASLSSLNGALVEPVPLTLNFMVRARAYVLGRLVKPKFYKRIEC 292 (314)
Q Consensus 213 g~~la~g~lp~FyQ~~ks~~~v~v~v~g~~vpL~g~G~~L~~~~~~~~g~VpL~l~~~~r~R~~VvG~lv~~k~~~~V~C 292 (314)
|..||.+.+|+|||+++++..+.+.+.....-+.. +..| ..|...|.+||++++++++|++ +|+++++++..+++|
T Consensus 122 g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L--~~D~~~G~v~l~~~~~v~gkVk-v~~i~k~~v~~~v~C 197 (219)
T PLN03160 122 GTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS-VPGL--LTDISSGLLNMNSYTRIGGKVK-ILKIIKKHVVVKMNC 197 (219)
T ss_pred CEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc-chhH--HHHhhCCeEEEEEEEEEEEEEE-EEEEEEEEEEEEEEe
Confidence 99999999999999999998888876533211211 2334 2236789999999999999999 678999999999999
Q ss_pred EEEEcCCCCccCcee-ccCcccC
Q 047795 293 SVIMDPKKMNVGISL-KNNCTYH 314 (314)
Q Consensus 293 ~v~v~~~~~~k~i~~-~~~C~y~ 314 (314)
++.|+... ..+ ++.|+++
T Consensus 198 ~v~V~~~~----~~i~~~~C~~~ 216 (219)
T PLN03160 198 TMTVNITS----QAIQGQKCKRH 216 (219)
T ss_pred EEEEECCC----CEEeccEeccc
Confidence 99998643 466 7899874
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.35 E-value=2.3e-12 Score=101.76 Aligned_cols=99 Identities=24% Similarity=0.399 Sum_probs=76.2
Q ss_pred EEEEecCCceeeEEEcCeeEEEEECcEEEe-eeccCcccccCCCeeEEEEEEEEeeeeccCCCCccccccccccccEEEE
Q 047795 188 KFTFRNTATFFGVHVTSTPLDLYYSQLTVA-TGTIRKFYQSRKSQRSVTVMMKGSHIPLYGGGASLSSLNGALVEPVPLT 266 (314)
Q Consensus 188 ~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la-~g~lp~FyQ~~ks~~~v~v~v~g~~vpL~g~G~~L~~~~~~~~g~VpL~ 266 (314)
+|+++|||. ++|+|++.++.++|.|..|| .+..++|+|++++.+.+.+.+..+...|. ..+.++ . .+.++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~---~~l~~~--~-~~~~~~~ 73 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLP---RLLKDL--L-AGRVPFD 73 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHH---HHHHHH--H-HTTSCEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHH---HHHHhh--h-ccccceE
Confidence 589999999 99999999999999999999 77899999999999999998877754442 233332 3 5678888
Q ss_pred EEEEEEEEEEEEEeEEeCeEEEEEEeE
Q 047795 267 LNFMVRARAYVLGRLVKPKFYKRIECS 293 (314)
Q Consensus 267 l~~~~r~R~~VvG~lv~~k~~~~V~C~ 293 (314)
+.++++++++|++.+...++...++|.
T Consensus 74 v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 74 VTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 899999999976656556666666664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.82 E-value=0.00012 Score=58.76 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=63.8
Q ss_pred EeEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeeccC-cccccCCCeeEEEEEEEEeeeeccCCCCccccccccc
Q 047795 181 VTVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTIR-KFYQSRKSQRSVTVMMKGSHIPLYGGGASLSSLNGAL 259 (314)
Q Consensus 181 Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp-~FyQ~~ks~~~v~v~v~g~~vpL~g~G~~L~~~~~~~ 259 (314)
+...+.+++.++|||. +.+.|+.....++|.|..||+|..+ .+..++++++.+.+.+.... ....+.+..+ ..
T Consensus 13 ~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~---~~~~~~~~~l--~~ 86 (100)
T smart00769 13 LEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL---FLAEALIWHI--AN 86 (100)
T ss_pred eEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh---hHhHHHHHhh--cc
Confidence 4677889999999998 9999999999999999999999986 79999999999988887631 1111233333 22
Q ss_pred cccEEEEEEEEE
Q 047795 260 VEPVPLTLNFMV 271 (314)
Q Consensus 260 ~g~VpL~l~~~~ 271 (314)
+..++++++..+
T Consensus 87 ~~~~~y~l~g~l 98 (100)
T smart00769 87 GEEIPYRLDGKL 98 (100)
T ss_pred CCCccEEEEEEE
Confidence 334666665544
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.69 E-value=0.0033 Score=58.47 Aligned_cols=60 Identities=23% Similarity=0.368 Sum_probs=49.3
Q ss_pred eEeEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeeccCcc-cccCCCeeEEEEEEEE
Q 047795 180 MVTVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTIRKF-YQSRKSQRSVTVMMKG 240 (314)
Q Consensus 180 ~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~F-yQ~~ks~~~v~v~v~g 240 (314)
.+.+|++-.|.+.||| ++.|.+.+..+++.|....+|.+..... .-++++.+.+...+..
T Consensus 121 ~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 121 TVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 4689999999999999 5999999999999999999999876543 4466677767666654
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.43 E-value=0.049 Score=47.49 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=51.0
Q ss_pred EEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeecc-CcccccCCCeeEEEEEEEEe
Q 047795 183 VNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTI-RKFYQSRKSQRSVTVMMKGS 241 (314)
Q Consensus 183 ~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~l-p~FyQ~~ks~~~v~v~v~g~ 241 (314)
..+-.++.++|||. |-|-+......++-.+..+|.|.. ..+..++++..++.+.+.-+
T Consensus 50 ~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d 108 (161)
T COG5608 50 TEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLD 108 (161)
T ss_pred eEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEe
Confidence 45558899999998 999999999999999999999974 66999999999999888765
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=94.68 E-value=0.11 Score=51.51 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=38.4
Q ss_pred CCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEe
Q 047795 151 QKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVA 217 (314)
Q Consensus 151 ~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la 217 (314)
-+|--.|+=+.|+|.-.+. + .+-+.+++.+.|||- |.|.++..++.||-+-.-|+
T Consensus 327 tKpL~~v~v~~I~NVlaS~--q---------ELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 327 TKPLTDVQVVSIQNVLASE--Q---------ELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred CcccccceEEEeeeeeecc--c---------eEEEeeEEEEECCCe-EEEEeccceeeeEecCCccC
Confidence 4555556556666665543 1 355567799999996 99999999999986544333
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=91.23 E-value=7.7 Score=35.66 Aligned_cols=110 Identities=10% Similarity=0.197 Sum_probs=60.8
Q ss_pred CCcceeee-hhHHHHHHHHHHHHHHhheeeeeeeC--CCCEEEEEEEEEeeeE-eccCCCCCCccc-eeEeEEEEEEEEE
Q 047795 117 HRALSRRC-YLLTFVVGFIVLFSMFSLILWGASKP--QKPTIRMKSISFNQFV-VQAGADFSGVAT-QMVTVNCTVKFTF 191 (314)
Q Consensus 117 ~~~~~rrc-~~l~~ll~~vll~gi~~LIlwlv~RP--~~P~fsV~s~~v~~f~-v~~gsd~sgvpt-~~Ls~N~tv~l~~ 191 (314)
++++.+|| |++++++.+++++++++++++=.=+| +.-.++|.++.+..-. .....+.+..-+ ..-+-|. +.+.+
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y 111 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKY 111 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEE
Confidence 34455566 77777777777777777766655666 4556667777664300 000001000000 0002233 45555
Q ss_pred ecCCceeeEEEcCeeEEEEECcEEEeeeccCcccccCCCeeE
Q 047795 192 RNTATFFGVHVTSTPLDLYYSQLTVATGTIRKFYQSRKSQRS 233 (314)
Q Consensus 192 ~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~FyQ~~ks~~~ 233 (314)
. |....++|+...+ ++..+..|..+.+.+.+-+.+.
T Consensus 112 ~--~~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 112 S--NTTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred c--CeEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEE
Confidence 4 3447888987644 5566777777777777766664
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=81.68 E-value=3.9 Score=34.51 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhheee--eeeeCCCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCce
Q 047795 130 VVGFIVLFSMFSLILW--GASKPQKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATF 197 (314)
Q Consensus 130 ll~~vll~gi~~LIlw--lv~RP~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~ 197 (314)
.+++++|++++.||+| +.-+++.|.+.+......+- ....+-+-++++|-...
T Consensus 9 ~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~---------------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 9 GISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM---------------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE---------------eCCEEEEEEEEEeCCCc
Confidence 3456777788888875 56688999998766555431 12234466777776553
No 9
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=76.90 E-value=3.2 Score=39.05 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=16.6
Q ss_pred EeEEEE--EEEEEecCCceeeEEE
Q 047795 181 VTVNCT--VKFTFRNTATFFGVHV 202 (314)
Q Consensus 181 Ls~N~t--v~l~~~NPN~~~gI~Y 202 (314)
|++..+ ++++++|||.++.=+.
T Consensus 104 l~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 104 LYLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred eEEEeccCeeEEccCCCCceeeeE
Confidence 555555 9999999999876553
No 10
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=74.84 E-value=3.3 Score=34.50 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=21.8
Q ss_pred eeeehhHHHHHHHHHHHHHHhheeeeeee
Q 047795 121 SRRCYLLTFVVGFIVLFSMFSLILWGASK 149 (314)
Q Consensus 121 ~rrc~~l~~ll~~vll~gi~~LIlwlv~R 149 (314)
.|+.+|+++++++++-++++.++++|+++
T Consensus 59 ~~~lffvglii~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHheee
Confidence 35557788888788888888888888764
No 11
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=69.90 E-value=15 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhheeeeeee
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGASK 149 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv~R 149 (314)
|++..++.+++++++.+.++|+..+
T Consensus 19 ~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 19 WILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred ehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5555555556666777777787653
No 12
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=61.41 E-value=91 Score=25.61 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=38.4
Q ss_pred Hhheeeeeee-CCCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEee
Q 047795 140 FSLILWGASK-PQKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVAT 218 (314)
Q Consensus 140 ~~LIlwlv~R-P~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~ 218 (314)
++++.|+.+. ...|.++-+ ...|.+.+ |. ++..++.++-. |.+-.-=-+.. +.|.+..+|.
T Consensus 18 ~~~~~w~~~~~~~~~~v~~~---~~gf~vv~--d~--------~v~v~f~Vtr~-~~~~a~C~VrA----~~~d~aeVGr 79 (112)
T PF14155_consen 18 GAVVAWFGYSQFGSPPVSAE---VIGFEVVD--DS--------TVEVTFDVTRD-PGRPAVCIVRA----LDYDGAEVGR 79 (112)
T ss_pred HHHHhHhhhhhccCCCceEE---EEEEEECC--CC--------EEEEEEEEEEC-CCCCEEEEEEE----EeCCCCEEEE
Confidence 3444555444 455555433 33444443 22 45555555544 65533222222 3466777775
Q ss_pred ec--cCcccccCCCeeEEEEEEEEee
Q 047795 219 GT--IRKFYQSRKSQRSVTVMMKGSH 242 (314)
Q Consensus 219 g~--lp~FyQ~~ks~~~v~v~v~g~~ 242 (314)
-. +|+ +...+..+.+.|....
T Consensus 80 reV~vp~---~~~~~~~~~v~v~Tt~ 102 (112)
T PF14155_consen 80 REVLVPP---SGERTVRVTVTVRTTA 102 (112)
T ss_pred EEEEECC---CCCcEEEEEEEEEecC
Confidence 43 344 3333444455555443
No 13
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=61.00 E-value=4.6 Score=32.15 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=29.5
Q ss_pred ceeee-hhHHHHHHHHHHHHHHhheeeeeeeCCCCE
Q 047795 120 LSRRC-YLLTFVVGFIVLFSMFSLILWGASKPQKPT 154 (314)
Q Consensus 120 ~~rrc-~~l~~ll~~vll~gi~~LIlwlv~RP~~P~ 154 (314)
-.||. .+.||+++.++++|++..-.|.-.+|.+|.
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 45565 778999999999999999999988887776
No 14
>PHA02898 virion envelope protein; Provisional
Probab=57.84 E-value=5.3 Score=31.86 Aligned_cols=34 Identities=9% Similarity=0.295 Sum_probs=28.8
Q ss_pred eeee-hhHHHHHHHHHHHHHHhheeee-eeeCCCCE
Q 047795 121 SRRC-YLLTFVVGFIVLFSMFSLILWG-ASKPQKPT 154 (314)
Q Consensus 121 ~rrc-~~l~~ll~~vll~gi~~LIlwl-v~RP~~P~ 154 (314)
.||. ++.+|+++.++++|++..-.|. -..|.+|.
T Consensus 43 ~wRalSii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 43 ALRSISIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 4555 7889999999999999999998 77887776
No 15
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.49 E-value=5.2 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=15.1
Q ss_pred HHHHHHHHHhheeeeeeeCCC
Q 047795 132 GFIVLFSMFSLILWGASKPQK 152 (314)
Q Consensus 132 ~~vll~gi~~LIlwlv~RP~~ 152 (314)
++++++.++..++|.++||++
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 355555666778888999975
No 16
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=54.96 E-value=6.9 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhheeeeeeeCCC
Q 047795 128 TFVVGFIVLFSMFSLILWGASKPQK 152 (314)
Q Consensus 128 ~~ll~~vll~gi~~LIlwlv~RP~~ 152 (314)
+-++++++++++++.|++.+++|+.
T Consensus 11 a~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 11 ADSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3344556666777777777788853
No 17
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=54.77 E-value=17 Score=32.72 Aligned_cols=29 Identities=10% Similarity=0.415 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHhheeeeeeeCCCC
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGASKPQKP 153 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv~RP~~P 153 (314)
|-|+|+..+.+++++++.++..+++|..|
T Consensus 3 WK~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 34566655667777788888889999876
No 18
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=53.85 E-value=14 Score=33.34 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=17.4
Q ss_pred eeCCCCEEEEEEEEEeeeEec
Q 047795 148 SKPQKPTIRMKSISFNQFVVQ 168 (314)
Q Consensus 148 ~RP~~P~fsV~s~~v~~f~v~ 168 (314)
..++.|.|.+++++...|+.+
T Consensus 36 ~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 36 VNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCCEEEeccEEEEECCC
Confidence 357889999999999988764
No 19
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=53.39 E-value=6.7 Score=27.37 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=14.2
Q ss_pred HHHHHHHHHhheeeeeeeCCC
Q 047795 132 GFIVLFSMFSLILWGASKPQK 152 (314)
Q Consensus 132 ~~vll~gi~~LIlwlv~RP~~ 152 (314)
.+++++++++.|+|.+++|+.
T Consensus 14 ~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHcccc
Confidence 455666667777777778873
No 20
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=52.02 E-value=7.5 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=10.6
Q ss_pred HHHHHHHHHhheeee
Q 047795 132 GFIVLFSMFSLILWG 146 (314)
Q Consensus 132 ~~vll~gi~~LIlwl 146 (314)
+.+.++++++||+|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 456667777888874
No 21
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=51.12 E-value=16 Score=26.78 Aligned_cols=19 Identities=11% Similarity=0.471 Sum_probs=13.6
Q ss_pred HHHHHHHHhheeeeeeeCC
Q 047795 133 FIVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~ 151 (314)
+++++.++++++|+.-||+
T Consensus 38 l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 38 LAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHhheeEEeccCC
Confidence 3444556788899999985
No 22
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=50.42 E-value=6.6 Score=32.71 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=9.5
Q ss_pred HhheeeeeeeCCCCE
Q 047795 140 FSLILWGASKPQKPT 154 (314)
Q Consensus 140 ~~LIlwlv~RP~~P~ 154 (314)
+.+++|+.+||++=+
T Consensus 12 ~~~i~yf~iRPQkKr 26 (113)
T PRK06531 12 MLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHheechHHHH
Confidence 334456679997654
No 23
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=50.23 E-value=8.6 Score=36.52 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=10.4
Q ss_pred EEEEEEEEecCCce
Q 047795 184 NCTVKFTFRNTATF 197 (314)
Q Consensus 184 N~tv~l~~~NPN~~ 197 (314)
+-.+.++++|.|..
T Consensus 87 ~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 87 SRNVTLNARNENGS 100 (264)
T ss_pred cCceEEEEecCCCc
Confidence 33488888998875
No 24
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.62 E-value=7.9 Score=32.65 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=16.6
Q ss_pred cceeeehhHHHHHHHHHHHHHHhheeeeeee-CCCCEEEEEE
Q 047795 119 ALSRRCYLLTFVVGFIVLFSMFSLILWGASK-PQKPTIRMKS 159 (314)
Q Consensus 119 ~~~rrc~~l~~ll~~vll~gi~~LIlwlv~R-P~~P~fsV~s 159 (314)
+|+.-.++++++.+.+-++|+++||+|++-| =|++...++.
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3443333333333344456677778887764 3666566554
No 25
>PRK05529 cell division protein FtsQ; Provisional
Probab=46.27 E-value=22 Score=33.34 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCEEEEEEEEEeeeEe-cc------CCCCCCccceeEeEEE--------------EEEEEEecCCceeeEEEc-CeeEEE
Q 047795 152 KPTIRMKSISFNQFVV-QA------GADFSGVATQMVTVNC--------------TVKFTFRNTATFFGVHVT-STPLDL 209 (314)
Q Consensus 152 ~P~fsV~s~~v~~f~v-~~------gsd~sgvpt~~Ls~N~--------------tv~l~~~NPN~~~gI~Y~-~~~v~l 209 (314)
.|.|.|+.+.|+.-.. +. .....|. .++.++. +++++-..||+ +-|++. ..++-.
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~--~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~Er~pvA~ 134 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGK--PLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVERVPLAF 134 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCC--cceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEEeeeEEE
Confidence 5899999999985432 11 0001121 2233321 48899999998 777764 444443
Q ss_pred E
Q 047795 210 Y 210 (314)
Q Consensus 210 ~ 210 (314)
.
T Consensus 135 ~ 135 (255)
T PRK05529 135 I 135 (255)
T ss_pred E
Confidence 3
No 26
>PHA03048 IMV membrane protein; Provisional
Probab=43.92 E-value=13 Score=29.77 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=26.7
Q ss_pred ceeee-hhHHHHHHHHHHHHHHhheeee-eeeCCC
Q 047795 120 LSRRC-YLLTFVVGFIVLFSMFSLILWG-ASKPQK 152 (314)
Q Consensus 120 ~~rrc-~~l~~ll~~vll~gi~~LIlwl-v~RP~~ 152 (314)
-.||. ++.+|+++.++++|++.+-.|. -..|.+
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy~r~C~~~~ 75 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMWGRYCTPSK 75 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 44665 7889999999999999999998 566653
No 27
>PRK14762 membrane protein; Provisional
Probab=41.54 E-value=32 Score=21.17 Aligned_cols=18 Identities=28% Similarity=0.859 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhee
Q 047795 127 LTFVVGFIVLFSMFSLIL 144 (314)
Q Consensus 127 l~~ll~~vll~gi~~LIl 144 (314)
++|++++++++|++-+|+
T Consensus 10 iifligllvvtgvfklif 27 (27)
T PRK14762 10 IIFLIGLLVVTGVFKMIF 27 (27)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 344556677777776654
No 28
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=40.35 E-value=21 Score=31.26 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHHHHHHHhheeeeeeeCCCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEE
Q 047795 133 FIVLFSMFSLILWGASKPQKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHV 202 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y 202 (314)
..+|+++++||+|+..|+++=.|- =.+| =.++++++|+.--.+|
T Consensus 60 g~ill~il~lvf~~c~r~kktdfi----------dSdG----------------kvvtay~~n~~~~~w~ 103 (154)
T PF04478_consen 60 GPILLGILALVFIFCIRRKKTDFI----------DSDG----------------KVVTAYRSNKLTKWWY 103 (154)
T ss_pred HHHHHHHHHhheeEEEecccCccc----------cCCC----------------cEEEEEcCchHHHHHH
Confidence 345567788888898999885542 1222 2378999998555555
No 29
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=39.93 E-value=72 Score=26.27 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=18.4
Q ss_pred EEEEEEEEEecCCceeeEEEcCeeEE
Q 047795 183 VNCTVKFTFRNTATFFGVHVTSTPLD 208 (314)
Q Consensus 183 ~N~tv~l~~~NPN~~~gI~Y~~~~v~ 208 (314)
.|+..++.+.||.. +++......+.
T Consensus 100 ~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 56677788999997 77766665544
No 30
>PHA03049 IMV membrane protein; Provisional
Probab=39.53 E-value=15 Score=27.85 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhheeeeeeeC
Q 047795 131 VGFIVLFSMFSLILWGASKP 150 (314)
Q Consensus 131 l~~vll~gi~~LIlwlv~RP 150 (314)
+.+++.+++++||+|++++-
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34667778899999998854
No 31
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.48 E-value=24 Score=31.89 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhheeeeeeeCCCCEEEEEEEEE
Q 047795 127 LTFVVGFIVLFSMFSLILWGASKPQKPTIRMKSISF 162 (314)
Q Consensus 127 l~~ll~~vll~gi~~LIlwlv~RP~~P~fsV~s~~v 162 (314)
|.|+..+.+.+.++++|.-.++.|+.|...+....=
T Consensus 13 w~f~iLLAln~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 13 WLFFILLALNTLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHHhheeeccCCCCCchhhccCc
Confidence 333333455555567777888999997777766544
No 32
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.44 E-value=18 Score=31.64 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHhheeeeeeeCCC
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGASKPQK 152 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv~RP~~ 152 (314)
++.++++.|+++++.+++++|.+..|..
T Consensus 8 ~i~ii~viflai~~s~~~~~~~s~~P~~ 35 (161)
T COG5353 8 IIIIILVIFLAIILSIALFFWKSMKPYH 35 (161)
T ss_pred eehhHHHHHHHHHHHHHHHHhHhcCccc
Confidence 4555555677888889999999998864
No 33
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=37.36 E-value=1.2e+02 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=17.0
Q ss_pred EEEEEecCCceeeEEEcCeeEEEEECcEEEe
Q 047795 187 VKFTFRNTATFFGVHVTSTPLDLYYSQLTVA 217 (314)
Q Consensus 187 v~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la 217 (314)
+..+++|-++ +.+..=...+.+...+...+
T Consensus 66 v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 66 VDGTVTNTGK-FTIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred EEEEEEECCC-CEeeEEEEEEEEEeCCCccC
Confidence 6677778776 45544455555555443333
No 34
>PF14927 Neurensin: Neurensin
Probab=36.69 E-value=41 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=16.4
Q ss_pred hhHHHHHHHH-HHHHHHhheeeeeeeCCCCEEE
Q 047795 125 YLLTFVVGFI-VLFSMFSLILWGASKPQKPTIR 156 (314)
Q Consensus 125 ~~l~~ll~~v-ll~gi~~LIlwlv~RP~~P~fs 156 (314)
|-.+|+++++ +++|++++++ ..+-|++++..
T Consensus 44 wkV~~i~g~l~Ll~Gi~~l~v-gY~vP~~~e~~ 75 (140)
T PF14927_consen 44 WKVGFISGLLLLLLGIVALTV-GYLVPPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hcccCCcceec
Confidence 4446666644 4556655555 33355555544
No 35
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=36.18 E-value=34 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhheeeeeeeCCCCEEEE
Q 047795 127 LTFVVGFIVLFSMFSLILWGASKPQKPTIRM 157 (314)
Q Consensus 127 l~~ll~~vll~gi~~LIlwlv~RP~~P~fsV 157 (314)
+..+.+++.++.+.++++|++.|-..|.+.+
T Consensus 6 l~~~~~~~~~~~l~~~~s~~v~~~~~P~iV~ 36 (112)
T TIGR02744 6 LWMIPGCLAMVVLSALVSYGIVRLNSPVTVA 36 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCeEEE
Confidence 3333345556666788999999988887764
No 36
>PF15281 Consortin_C: Consortin C-terminus
Probab=33.72 E-value=50 Score=27.43 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhheeeeeee
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGASK 149 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv~R 149 (314)
++|.++..+.+++.+..-.+|..+.
T Consensus 55 l~L~LlclvTv~lS~gGTALYCt~g 79 (113)
T PF15281_consen 55 LLLLLLCLVTVVLSVGGTALYCTFG 79 (113)
T ss_pred HHHHHHHHHHHHHhccceEEEEecC
Confidence 3344333344556666677777653
No 37
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=33.46 E-value=1.7e+02 Score=21.85 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=22.7
Q ss_pred EEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeeccCcc
Q 047795 184 NCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTIRKF 224 (314)
Q Consensus 184 N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~F 224 (314)
..+++++++|..... -....+.++..+..++...++.+
T Consensus 20 ~~~i~~~V~N~G~~~---~~~~~v~~~~~~~~~~~~~i~~L 57 (101)
T PF07705_consen 20 PVTITVTVKNNGTAD---AENVTVRLYLDGNSVSTVTIPSL 57 (101)
T ss_dssp EEEEEEEEEE-SSS----BEEEEEEEEETTEEEEEEEESEB
T ss_pred EEEEEEEEEECCCCC---CCCEEEEEEECCceeccEEECCc
Confidence 455778899986622 33456666667777766566443
No 38
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=33.46 E-value=19 Score=29.74 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=12.5
Q ss_pred HHHHHHhheeeeee--eCCCCEEEE
Q 047795 135 VLFSMFSLILWGAS--KPQKPTIRM 157 (314)
Q Consensus 135 ll~gi~~LIlwlv~--RP~~P~fsV 157 (314)
++++++ ||+||++ |-..|.|.|
T Consensus 5 ilia~~-li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 5 ILIAAA-LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHH-HHHHHHHccccCceEEEE
Confidence 333443 7777764 444477764
No 39
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=33.15 E-value=21 Score=24.05 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=4.4
Q ss_pred Hhheeeeee
Q 047795 140 FSLILWGAS 148 (314)
Q Consensus 140 ~~LIlwlv~ 148 (314)
...|+|.++
T Consensus 24 mliif~f~l 32 (43)
T PF11395_consen 24 MLIIFWFSL 32 (43)
T ss_pred HHHHHHHHH
Confidence 344556543
No 40
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.63 E-value=58 Score=26.24 Aligned_cols=24 Identities=13% Similarity=0.366 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHhheeeee-ee
Q 047795 126 LLTFVVGFIVLFSMFSLILWGA-SK 149 (314)
Q Consensus 126 ~l~~ll~~vll~gi~~LIlwlv-~R 149 (314)
+|..+++|++++-++.+|.|.+ +|
T Consensus 64 ili~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEe
Confidence 3444555666666666666654 44
No 41
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=32.54 E-value=21 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.1
Q ss_pred HHHHHHHHHhheeeeeeeCC
Q 047795 132 GFIVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 132 ~~vll~gi~~LIlwlv~RP~ 151 (314)
.+++.+++++||+|.+++-+
T Consensus 7 Li~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35667788899999987644
No 42
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.15 E-value=16 Score=28.26 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhheeeeee
Q 047795 130 VVGFIVLFSMFSLILWGAS 148 (314)
Q Consensus 130 ll~~vll~gi~~LIlwlv~ 148 (314)
+++.+++|.+|+..+|+++
T Consensus 6 l~~plivf~ifVap~WL~l 24 (75)
T PF06667_consen 6 LFVPLIVFMIFVAPIWLIL 24 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334556666677777664
No 43
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.48 E-value=24 Score=34.92 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=7.5
Q ss_pred CCCcc-cccccccccCC
Q 047795 97 KPWKE-FDAIEEEGLLD 112 (314)
Q Consensus 97 ~~w~~-~~~~~~~~~~~ 112 (314)
+.|+- +.+.+++...|
T Consensus 158 kkk~~~l~i~~dQ~F~d 174 (372)
T KOG2927|consen 158 KKKKFELEIHDDQAFQD 174 (372)
T ss_pred ccCccceeeccchhhcc
Confidence 44553 54444444443
No 44
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=31.21 E-value=23 Score=24.34 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhheee
Q 047795 128 TFVVGFIVLFSMFSLILW 145 (314)
Q Consensus 128 ~~ll~~vll~gi~~LIlw 145 (314)
.|++.+++..+++++++|
T Consensus 13 VF~lVglv~i~iva~~iY 30 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIY 30 (43)
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 333445666677777764
No 45
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=29.73 E-value=65 Score=22.66 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhheeeeeeeCC
Q 047795 131 VGFIVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 131 l~~vll~gi~~LIlwlv~RP~ 151 (314)
+...+|+++.+..+|.+|-|.
T Consensus 13 ~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 13 TILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHhhheeeeccCCc
Confidence 346678889999999998774
No 46
>PHA02650 hypothetical protein; Provisional
Probab=28.83 E-value=44 Score=26.15 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=6.6
Q ss_pred HHHHHHHHhheeee
Q 047795 133 FIVLFSMFSLILWG 146 (314)
Q Consensus 133 ~vll~gi~~LIlwl 146 (314)
+++++.++.+++||
T Consensus 57 ~~v~i~~l~~flYL 70 (81)
T PHA02650 57 FSLIIVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444445554
No 47
>PF15302 P33MONOX: P33 mono-oxygenase
Probab=28.66 E-value=72 Score=30.41 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=18.9
Q ss_pred CCcccccccccCCCCCCCCCCCC
Q 047795 41 GEKTTNSFHSTPVLSPMGSPPHS 63 (314)
Q Consensus 41 ~~~~~~s~~~tp~~sp~~sp~h~ 63 (314)
.|+.++|.||||...|.-||-+.
T Consensus 152 Eerq~sSaQSTPssTP~ssPkq~ 174 (294)
T PF15302_consen 152 EERQPSSAQSTPSSTPHSSPKQK 174 (294)
T ss_pred hhcCccccccCCCCCCCCCcccc
Confidence 35668899999999998888884
No 48
>CHL00020 psbN photosystem II protein N
Probab=28.58 E-value=66 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhheeeeeeeCC
Q 047795 130 VVGFIVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 130 ll~~vll~gi~~LIlwlv~RP~ 151 (314)
++...+|+++....+|.++-|-
T Consensus 9 i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 9 IFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred HHHHHHHHHhhheeeeeccCCc
Confidence 3346678888999999988774
No 49
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=27.95 E-value=40 Score=26.63 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=12.1
Q ss_pred heeeeeeeCCCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCce
Q 047795 142 LILWGASKPQKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATF 197 (314)
Q Consensus 142 LIlwlv~RP~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~ 197 (314)
+.+|+........-....+++.++.++... -.+..+-.++|.++|.+..
T Consensus 7 ~~~~~~~~~~~~~~~~v~I~~~~~~f~P~~-------i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 7 AALALSSSASAAAAQTVTITVTDFGFSPST-------ITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp -----------------------EEEES-E-------EEEETTCEEEEEEEE-SSS
T ss_pred ccccccccccccccccccccccCCeEecCE-------EEEcCCCeEEEEEEECCCC
Confidence 333443333344444455556666554310 0122222477888888764
No 50
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=27.73 E-value=37 Score=29.88 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=11.2
Q ss_pred HHHHHhheeeeeeeCCC
Q 047795 136 LFSMFSLILWGASKPQK 152 (314)
Q Consensus 136 l~gi~~LIlwlv~RP~~ 152 (314)
|+++++.++|+.+||-.
T Consensus 14 l~~~~~y~~W~~~rpV~ 30 (157)
T PF06092_consen 14 LLACILYFLWLTLRPVE 30 (157)
T ss_pred HHHHHHHhhhhccCCeE
Confidence 33434488899999843
No 51
>PTZ00200 cysteine proteinase; Provisional
Probab=27.64 E-value=66 Score=32.88 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhheeeeeee
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGASK 149 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv~R 149 (314)
.++++++.++|++++.+++.+++.|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (448)
T PTZ00200 45 IIISFLVFLFLAIGGSIVSYVLVSK 69 (448)
T ss_pred ehHHHHHHHHHHHHhheEEEEEEEe
Confidence 3444444344444555666777777
No 52
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=27.62 E-value=20 Score=28.33 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=14.1
Q ss_pred HHHHHHHHhheeeeeeeC
Q 047795 133 FIVLFSMFSLILWGASKP 150 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP 150 (314)
+++++.|+|+|+|.++|-
T Consensus 9 ~~V~V~IVclliya~YRR 26 (92)
T PHA02681 9 TVIVISIVCYIVIMMYRR 26 (92)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467778899999988764
No 53
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.43 E-value=2.7e+02 Score=24.32 Aligned_cols=27 Identities=7% Similarity=-0.073 Sum_probs=13.2
Q ss_pred EEEEEecCCceeeEEEcCeeEEEEECcE
Q 047795 187 VKFTFRNTATFFGVHVTSTPLDLYYSQL 214 (314)
Q Consensus 187 v~l~~~NPN~~~gI~Y~~~~v~l~Y~g~ 214 (314)
+++++..+... ..+|=...+.|.+.+.
T Consensus 74 fvVNL~~~~~~-~~ryLkv~i~L~~~~~ 100 (166)
T PRK12785 74 MLVNLAGDPGE-RVQYLKLKVVLEVKDE 100 (166)
T ss_pred EEEECCCCCCC-cceEEEEEEEEEECCH
Confidence 44555433221 2356666666666553
No 54
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=26.86 E-value=46 Score=30.84 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=6.6
Q ss_pred HhheeeeeeeC
Q 047795 140 FSLILWGASKP 150 (314)
Q Consensus 140 ~~LIlwlv~RP 150 (314)
++.+.|+.+||
T Consensus 238 ~Ia~aW~~yRP 248 (248)
T PF07787_consen 238 TIALAWLFYRP 248 (248)
T ss_pred HHHHhheeeCc
Confidence 34445777776
No 55
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=26.53 E-value=1e+02 Score=25.91 Aligned_cols=26 Identities=19% Similarity=0.444 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHhheeeeeeeC
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGASKP 150 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv~RP 150 (314)
++++.+..++++++++..+++....|
T Consensus 32 liiG~vT~l~VLvtii~afvf~~~~p 57 (118)
T PF10856_consen 32 LIIGAVTSLFVLVTIISAFVFPQDPP 57 (118)
T ss_pred eehHHHHHHHHHHHHhheEEecCCCC
Confidence 55676665666666655554443333
No 56
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.17 E-value=26 Score=33.90 Aligned_cols=18 Identities=11% Similarity=0.229 Sum_probs=13.3
Q ss_pred HHHHHHHHHhheeeeeee
Q 047795 132 GFIVLFSMFSLILWGASK 149 (314)
Q Consensus 132 ~~vll~gi~~LIlwlv~R 149 (314)
+.+|++.++.+|+||++|
T Consensus 263 iaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666678888898876
No 57
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=26.00 E-value=35 Score=27.37 Aligned_cols=30 Identities=20% Similarity=0.638 Sum_probs=24.9
Q ss_pred eeee-hhHHHHHHHHHHHHHHhheeee-eeeC
Q 047795 121 SRRC-YLLTFVVGFIVLFSMFSLILWG-ASKP 150 (314)
Q Consensus 121 ~rrc-~~l~~ll~~vll~gi~~LIlwl-v~RP 150 (314)
.||. .+++|+++.++++|++..-.|. -.+|
T Consensus 43 ~wRalSii~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 43 TWRALSIICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4555 7889999999999999999995 5677
No 58
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=25.94 E-value=1.6e+02 Score=34.11 Aligned_cols=6 Identities=50% Similarity=1.198 Sum_probs=2.2
Q ss_pred CCCCee
Q 047795 24 PRRPVY 29 (314)
Q Consensus 24 ~~~~~y 29 (314)
|--|.|
T Consensus 1510 ptspsy 1515 (1605)
T KOG0260|consen 1510 PTSPSY 1515 (1605)
T ss_pred CCCCCC
Confidence 333333
No 59
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=25.85 E-value=68 Score=26.21 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhheeeee
Q 047795 125 YLLTFVVGFIVLFSMFSLILWGA 147 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwlv 147 (314)
+||+.++++++.+|+++.+++.+
T Consensus 20 IfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777788888888777765
No 60
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.01 E-value=2.2e+02 Score=26.36 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=37.6
Q ss_pred HHHHHHHHhheeeeeeeCCCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCce----eeEEEcCeeEE
Q 047795 133 FIVLFSMFSLILWGASKPQKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATF----FGVHVTSTPLD 208 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~----~gI~Y~~~~v~ 208 (314)
+++++...+..+|+-+.+..++.-=..|.=+. =+.....+-||+.- +.+.+++..-.
T Consensus 12 i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~-------------------lv~g~y~i~~~~~~~~~~~~~~Vts~~G~ 72 (210)
T KOG1691|consen 12 IFLLLLPLVHALRFDVPSKTTKCISEEIHENV-------------------LVVGDYEIINPNGDHSHKLSVKVTSPYGN 72 (210)
T ss_pred HHHHHhhhhheEEEEecCCCCEeehhhhccCe-------------------EEEEEEEEecCCCCccceEEEEEEcCCCc
Confidence 44444556788899888888665422221111 11233445555543 55556655555
Q ss_pred EEECcEEEeeecc
Q 047795 209 LYYSQLTVATGTI 221 (314)
Q Consensus 209 l~Y~g~~la~g~l 221 (314)
.+|+-..+..|++
T Consensus 73 ~~~~~env~~gqF 85 (210)
T KOG1691|consen 73 NLHSKENVTKGQF 85 (210)
T ss_pred eeehhhccccceE
Confidence 6666555555543
No 61
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=24.96 E-value=1.8e+02 Score=24.30 Aligned_cols=14 Identities=21% Similarity=0.588 Sum_probs=0.0
Q ss_pred HHHHHHHHhheeee
Q 047795 133 FIVLFSMFSLILWG 146 (314)
Q Consensus 133 ~vll~gi~~LIlwl 146 (314)
++++++++.|+++.
T Consensus 15 ~~~i~~~~~l~~~~ 28 (131)
T PF03100_consen 15 LVIIAAAIYLILYS 28 (131)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 62
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=24.88 E-value=64 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=15.6
Q ss_pred HHHHHHHHHhheeeeeeeCC
Q 047795 132 GFIVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 132 ~~vll~gi~~LIlwlv~RP~ 151 (314)
...+|+++.+..+|.++.|-
T Consensus 11 i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 11 ISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHhhhhhheeCCC
Confidence 35677888889999998763
No 63
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=24.79 E-value=32 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=11.8
Q ss_pred HHHHHHHHhheeeeeeeCCC
Q 047795 133 FIVLFSMFSLILWGASKPQK 152 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~~ 152 (314)
.++.+++++-.+|..+||.+
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 44455555555666677754
No 64
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.51 E-value=25 Score=29.11 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=8.7
Q ss_pred HhheeeeeeeCCCCE
Q 047795 140 FSLILWGASKPQKPT 154 (314)
Q Consensus 140 ~~LIlwlv~RP~~P~ 154 (314)
++++.|+.+||++=+
T Consensus 14 ~~i~yF~~iRPQkKr 28 (109)
T PRK05886 14 MGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHccHHHHH
Confidence 333445668997544
No 65
>PHA02844 putative transmembrane protein; Provisional
Probab=24.48 E-value=68 Score=24.83 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=7.0
Q ss_pred HHHHHHHHhheeee
Q 047795 133 FIVLFSMFSLILWG 146 (314)
Q Consensus 133 ~vll~gi~~LIlwl 146 (314)
+++++.++.+++||
T Consensus 56 ~~v~~~~~~~flYL 69 (75)
T PHA02844 56 IFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444555555
No 66
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.18 E-value=83 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=13.8
Q ss_pred HHHHHHHHhheeeeeeeCC
Q 047795 133 FIVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~ 151 (314)
+++++-++..++|++++.+
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 3455778888999888754
No 67
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.75 E-value=1.9e+02 Score=25.04 Aligned_cols=16 Identities=19% Similarity=0.036 Sum_probs=9.7
Q ss_pred EEEcCeeEEEEECcEE
Q 047795 200 VHVTSTPLDLYYSQLT 215 (314)
Q Consensus 200 I~Y~~~~v~l~Y~g~~ 215 (314)
.+|=...+.|.+.+..
T Consensus 78 ~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 78 DRVLYVGLTLRLPDEA 93 (162)
T ss_pred ceEEEEEEEEEECCHH
Confidence 5666666666665543
No 68
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.72 E-value=20 Score=31.35 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=20.8
Q ss_pred HHHHHHHHhheeeeeeeCCCCEEEEEEEEEe
Q 047795 133 FIVLFSMFSLILWGASKPQKPTIRMKSISFN 163 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~~P~fsV~s~~v~ 163 (314)
.++++.|++||.|...|=+|--.-+....++
T Consensus 39 vVliiiiivli~lcssRKkKaaAAi~eediQ 69 (189)
T PF05568_consen 39 VVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQ 69 (189)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhhhccc
Confidence 3455567788888888888766655544444
No 69
>PF14828 Amnionless: Amnionless
Probab=23.62 E-value=47 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhheeeeeeeCCCCEE
Q 047795 127 LTFVVGFIVLFSMFSLILWGASKPQKPTI 155 (314)
Q Consensus 127 l~~ll~~vll~gi~~LIlwlv~RP~~P~f 155 (314)
++++++.+++++++++++|+.+.|+.|.+
T Consensus 341 ~~~vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 341 VGIVLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred eeehHHHHHHHHHHHHhheEEeccccccc
Confidence 34444455566666666766666777665
No 70
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=23.23 E-value=5.1e+02 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.419 Sum_probs=15.6
Q ss_pred ceeeehhHHHHHHHHHHHHHHhheeeeeee
Q 047795 120 LSRRCYLLTFVVGFIVLFSMFSLILWGASK 149 (314)
Q Consensus 120 ~~rrc~~l~~ll~~vll~gi~~LIlwlv~R 149 (314)
+..+.=++=+ +++++++++++.++|....
T Consensus 10 lFgkiniiDl-~~~lvvl~v~~g~~~~~~~ 38 (168)
T PF14221_consen 10 LFGKINIIDL-LAILVVLAVVVGIFWKPGL 38 (168)
T ss_pred EeeeEeHHHH-HHHHHHHHHhheeEEEecc
Confidence 4555422222 2345555567778887665
No 71
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=23.12 E-value=38 Score=32.85 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=16.2
Q ss_pred HHHHHHHhheeee---eeeCCCCEEE
Q 047795 134 IVLFSMFSLILWG---ASKPQKPTIR 156 (314)
Q Consensus 134 vll~gi~~LIlwl---v~RP~~P~fs 156 (314)
++|.+++++.+|. .+-|+.|++.
T Consensus 56 ~~la~lf~~~~~~~~~tidp~~P~~~ 81 (300)
T KOG3927|consen 56 GVLAALFAGCMWFMLQTIDPKVPKYK 81 (300)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 4555666666664 4689999999
No 72
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.99 E-value=40 Score=32.22 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=9.2
Q ss_pred HHHHHHHHhheeeeeee
Q 047795 133 FIVLFSMFSLILWGASK 149 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~R 149 (314)
++++..++++|+|+.++
T Consensus 252 ~~~v~lii~l~i~~~~~ 268 (269)
T KOG0811|consen 252 GGPVGLIIGLIIAGIAA 268 (269)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33444455666676554
No 73
>PHA02819 hypothetical protein; Provisional
Probab=22.72 E-value=65 Score=24.68 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=5.2
Q ss_pred HHHHHHHhheeee
Q 047795 134 IVLFSMFSLILWG 146 (314)
Q Consensus 134 vll~gi~~LIlwl 146 (314)
++++.++.+++||
T Consensus 55 ~~~~~~~~~flYL 67 (71)
T PHA02819 55 TIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 74
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=22.70 E-value=4.5e+02 Score=21.85 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=37.3
Q ss_pred EEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEEcCeeEEEE-ECcEEEeeecc
Q 047795 155 IRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHVTSTPLDLY-YSQLTVATGTI 221 (314)
Q Consensus 155 fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~-Y~g~~la~g~l 221 (314)
-.++.++++...+....+. .--+.++.+++|... ....|-...++|+ -+|..|++-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~~~--------~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDG--------PGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeecCC--------CCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 4666666665555432111 233457788999887 6777888888887 56777776554
No 75
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=22.64 E-value=79 Score=26.11 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=16.4
Q ss_pred eeehhHHHHHHHHHHHHHHhheeeeeeeCCCCEEE
Q 047795 122 RRCYLLTFVVGFIVLFSMFSLILWGASKPQKPTIR 156 (314)
Q Consensus 122 rrc~~l~~ll~~vll~gi~~LIlwlv~RP~~P~fs 156 (314)
|+|+....++ ++.++.+-+.+.|++.++..|.+.
T Consensus 1 ~~~~l~~~~~-~~~~~~~~~~vt~~l~~~~~p~iV 34 (111)
T PF09677_consen 1 RRRWLVIVLL-AVAALLLSAWVTWLLASQPQPRIV 34 (111)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHhcCCCceE
Confidence 4565444433 223333334555556666677543
No 76
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=22.46 E-value=86 Score=31.89 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=20.0
Q ss_pred hhHHHHHH-HHHHHHHHhheeeeeeeCCCCEE
Q 047795 125 YLLTFVVG-FIVLFSMFSLILWGASKPQKPTI 155 (314)
Q Consensus 125 ~~l~~ll~-~vll~gi~~LIlwlv~RP~~P~f 155 (314)
-..+++++ ++++++++++|+|.++.. +|++
T Consensus 238 a~~Glf~Gil~lv~tii~lilf~v~~~-~~~~ 268 (441)
T PF03189_consen 238 ASKGLFLGILVLVATIIVLILFFVLIN-DPEY 268 (441)
T ss_pred cchhHHHHHHHHHHHHHHhehhhheec-CCch
Confidence 33455554 457779999999988775 3443
No 77
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=22.16 E-value=42 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHhheeee
Q 047795 125 YLLTFVVGFIVLFSMFSLILWG 146 (314)
Q Consensus 125 ~~l~~ll~~vll~gi~~LIlwl 146 (314)
++++.++++=+++-++.|++++
T Consensus 8 lflgl~~~lQL~LL~FlL~fFL 29 (44)
T PF08135_consen 8 LFLGLTFALQLLLLVFLLFFFL 29 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443333344444443
No 78
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.01 E-value=31 Score=24.68 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhheeeeeeeCCCCEEEEE
Q 047795 129 FVVGFIVLFSMFSLILWGASKPQKPTIRMK 158 (314)
Q Consensus 129 ~ll~~vll~gi~~LIlwlv~RP~~P~fsV~ 158 (314)
+++.++++++++.+.+|-+++-+.=+-+++
T Consensus 5 ~iV~i~iv~~lLg~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSICTTLKAYGYKHTVD 34 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 334566677777777777777665555543
No 79
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=21.93 E-value=79 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.348 Sum_probs=7.8
Q ss_pred HHHHHHHHhheee-----eeeeCCCCEEEEEEEEEee
Q 047795 133 FIVLFSMFSLILW-----GASKPQKPTIRMKSISFNQ 164 (314)
Q Consensus 133 ~vll~gi~~LIlw-----lv~RP~~P~fsV~s~~v~~ 164 (314)
++++++++++.++ .+.--..|..++....++.
T Consensus 8 ~~iii~~~~~~~~~~~~~~~~n~~aP~~sv~a~Vv~K 44 (110)
T PF10694_consen 8 FIIIIGIIIFVFIRQIRQWAKNNNAPVRSVPATVVDK 44 (110)
T ss_dssp --------------------------EEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEe
Confidence 4444444444444 2233456888877766664
No 80
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=21.81 E-value=93 Score=19.29 Aligned_cols=13 Identities=46% Similarity=1.231 Sum_probs=7.6
Q ss_pred HHHHHHHHhheee
Q 047795 133 FIVLFSMFSLILW 145 (314)
Q Consensus 133 ~vll~gi~~LIlw 145 (314)
+.+++++..+++|
T Consensus 15 ~~lv~~iTGl~l~ 27 (27)
T PF03929_consen 15 FMLVFAITGLILW 27 (27)
T ss_pred HHHHHHHHHHHhC
Confidence 4555566666655
No 81
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.66 E-value=76 Score=29.48 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=6.0
Q ss_pred HHHHHhheeeeeee
Q 047795 136 LFSMFSLILWGASK 149 (314)
Q Consensus 136 l~gi~~LIlwlv~R 149 (314)
+++++++++|++.|
T Consensus 249 ~~~~~~~~~~~~~R 262 (262)
T PF14257_consen 249 LILIIGLLVRFVRR 262 (262)
T ss_pred HHHHHHHHHheEeC
Confidence 33444444444443
No 82
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=21.62 E-value=43 Score=23.71 Aligned_cols=14 Identities=29% Similarity=0.859 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhee
Q 047795 131 VGFIVLFSMFSLIL 144 (314)
Q Consensus 131 l~~vll~gi~~LIl 144 (314)
++|++.+.+++++.
T Consensus 13 F~~lIC~Fl~~~~~ 26 (54)
T PF06716_consen 13 FGFLICLFLFCLVV 26 (54)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555445555543
No 83
>PTZ00116 signal peptidase; Provisional
Probab=21.18 E-value=6.2e+02 Score=22.91 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=22.0
Q ss_pred CCCCEEEEEEEEEeeeEecc--CCCCCCccceeEeEEEEEEEE-EecCCceeeEEE
Q 047795 150 PQKPTIRMKSISFNQFVVQA--GADFSGVATQMVTVNCTVKFT-FRNTATFFGVHV 202 (314)
Q Consensus 150 P~~P~fsV~s~~v~~f~v~~--gsd~sgvpt~~Ls~N~tv~l~-~~NPN~~~gI~Y 202 (314)
+..|...|+=-.|.+|.... +.|. ..+++|+.+.|+ .-|=|+|.-+-|
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~-----a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDE-----AVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred CCCceeeEEEeecccccccCCCCcee-----EEEEEeeccCchhcCCccccEEEEE
Confidence 45555666555556665432 2232 234444443332 236666544433
No 84
>PHA03054 IMV membrane protein; Provisional
Probab=21.03 E-value=77 Score=24.30 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=4.3
Q ss_pred HHHHHHhheee
Q 047795 135 VLFSMFSLILW 145 (314)
Q Consensus 135 ll~gi~~LIlw 145 (314)
+++.++.+++|
T Consensus 58 v~~~~l~~flY 68 (72)
T PHA03054 58 VLILLLLIYLY 68 (72)
T ss_pred HHHHHHHHHHH
Confidence 33333334444
No 85
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.95 E-value=63 Score=25.90 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=7.4
Q ss_pred HHHHHHhheeee-eee
Q 047795 135 VLFSMFSLILWG-ASK 149 (314)
Q Consensus 135 ll~gi~~LIlwl-v~R 149 (314)
++.+|+++++|+ ++|
T Consensus 78 ~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHHHhheeEEe
Confidence 333445555555 445
No 86
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=20.89 E-value=65 Score=29.91 Aligned_cols=6 Identities=17% Similarity=0.772 Sum_probs=2.5
Q ss_pred ehhHHH
Q 047795 124 CYLLTF 129 (314)
Q Consensus 124 c~~l~~ 129 (314)
||.|..
T Consensus 228 ~~~~~~ 233 (251)
T PF09753_consen 228 CWTWLM 233 (251)
T ss_pred HHHHHH
Confidence 444433
No 87
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=20.69 E-value=99 Score=29.00 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=43.9
Q ss_pred HHHHHHHHhheeeeeeeCCCCEEEEEEEEEee-eEeccC-----CCCCCccceeEeEEE--------------EEEEEEe
Q 047795 133 FIVLFSMFSLILWGASKPQKPTIRMKSISFNQ-FVVQAG-----ADFSGVATQMVTVNC--------------TVKFTFR 192 (314)
Q Consensus 133 ~vll~gi~~LIlwlv~RP~~P~fsV~s~~v~~-f~v~~g-----sd~sgvpt~~Ls~N~--------------tv~l~~~ 192 (314)
+++++++.++++|...-+..|-|.|..+.|++ .+++.- ....+ .+.+++++. .+.++=.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~-~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~ 116 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDG-GTSFLTLDLNAIRENIEKLPWVKSAEVRRQ 116 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhcc-CCceEEEcHHHHHHHHHhCCCeEEEEEEEe
Confidence 45555667788899999999999999999985 333310 00111 123344332 3667777
Q ss_pred cCCceeeEEEcC
Q 047795 193 NTATFFGVHVTS 204 (314)
Q Consensus 193 NPN~~~gI~Y~~ 204 (314)
=||+ +-|+...
T Consensus 117 ~Pnt-v~I~v~E 127 (269)
T COG1589 117 FPNT-LEIEVVE 127 (269)
T ss_pred CCCc-EEEEEEE
Confidence 7998 7777653
No 88
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.37 E-value=5.5e+02 Score=22.24 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=15.3
Q ss_pred EEEEEecCCceeeEEEcCeeEEEE-ECcEEEeeecc
Q 047795 187 VKFTFRNTATFFGVHVTSTPLDLY-YSQLTVATGTI 221 (314)
Q Consensus 187 v~l~~~NPN~~~gI~Y~~~~v~l~-Y~g~~la~g~l 221 (314)
+++.+.-.+..+-+.|+...=.+| -+...|+.|.+
T Consensus 73 ~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~ 108 (148)
T PRK13254 73 VRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRL 108 (148)
T ss_pred EEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEE
Confidence 334444445555555553222222 23344555555
No 89
>PHA02831 EEV host range protein; Provisional
Probab=20.35 E-value=1.1e+02 Score=29.09 Aligned_cols=14 Identities=29% Similarity=0.569 Sum_probs=9.1
Q ss_pred HHHHHHHHHhheee
Q 047795 132 GFIVLFSMFSLILW 145 (314)
Q Consensus 132 ~~vll~gi~~LIlw 145 (314)
.|++++|+++|++=
T Consensus 241 ~~~~~~~~~~~~~~ 254 (268)
T PHA02831 241 CFIFVLGLIALFLS 254 (268)
T ss_pred HHHHHHHHHHHhhc
Confidence 36667777766654
Done!