Query 047795
Match_columns 314
No_of_seqs 177 out of 616
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.2 4.8E-06 1.6E-10 72.8 8.6 105 151-274 43-148 (174)
2 1xo8_A AT1G01470; structural g 97.6 1.7E-05 5.7E-10 67.6 1.7 103 151-273 20-124 (151)
3 3but_A Uncharacterized protein 96.8 0.0058 2E-07 51.1 9.2 61 182-243 17-78 (136)
4 2knc_B Integrin beta-3; transm 56.7 5 0.00017 30.1 1.9 21 126-146 13-33 (79)
5 2k9j_B Integrin beta-3; transm 48.3 9 0.00031 25.4 1.9 19 128-146 14-32 (43)
6 2k1a_A Integrin alpha-IIB; sin 39.5 13 0.00044 24.7 1.5 24 130-153 17-42 (42)
7 2l8s_A Integrin alpha-1; trans 38.7 11 0.00037 26.4 1.2 26 128-153 14-41 (54)
8 2knc_A Integrin alpha-IIB; tra 38.5 11 0.00038 26.3 1.2 24 130-153 19-44 (54)
9 3d8m_A BPP, baseplate protein, 33.3 47 0.0016 28.3 4.4 57 176-234 62-122 (165)
10 2lot_A Apelin receptor; membra 33.1 2.5 8.6E-05 30.6 -3.0 19 130-148 34-54 (64)
11 3s8f_C Cytochrome C oxidase po 31.8 15 0.00052 23.3 0.9 16 131-146 9-24 (34)
12 1nwd_B GAD, glutamate decarbox 30.5 7.9 0.00027 22.8 -0.6 9 5-13 3-11 (28)
13 2ks1_B Epidermal growth factor 20.9 26 0.00087 23.4 0.5 18 134-151 21-38 (44)
14 3kdp_B Sodium/potassium-transp 20.7 26 0.0009 32.3 0.7 23 134-156 27-52 (286)
15 2l6w_A Beta-type platelet-deri 25.5 22 0.00075 23.2 0.0 21 136-156 19-39 (39)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.18 E-value=4.8e-06 Score=72.76 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=81.3
Q ss_pred CCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeeccCc-ccccCC
Q 047795 151 QKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTIRK-FYQSRK 229 (314)
Q Consensus 151 ~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~-FyQ~~k 229 (314)
++|+++|.++.+..+.... ..+.++|+++|||. +.|-+..+...|.-.|..|++|..+. +.-++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~~-------------~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~ 108 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG-------------VDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGS 108 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS-------------EEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSS
T ss_pred CCCEEEEEEeEEeccccce-------------EEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCC
Confidence 8999999999998876542 56778899999998 99999999999999999999999875 777999
Q ss_pred CeeEEEEEEEEeeeeccCCCCccccccccccccEEEEEEEEEEEE
Q 047795 230 SQRSVTVMMKGSHIPLYGGGASLSSLNGALVEPVPLTLNFMVRAR 274 (314)
Q Consensus 230 s~~~v~v~v~g~~vpL~g~G~~L~~~~~~~~g~VpL~l~~~~r~R 274 (314)
+++++.+.+...-..|.. .+.++ .....++++|++.+.+.
T Consensus 109 g~~~v~Vpv~v~~~~l~~---~~~~l--~~~~~i~Y~L~g~L~id 148 (174)
T 1yyc_A 109 GTTVLDVPVKVAYSIAVS---LMKDM--CTDWDIDYQLDIGLTFD 148 (174)
T ss_dssp EEEEEEEEEEESHHHHHH---TCCCC--CSSEEECEEEEEEEEEE
T ss_pred CcEEEEEEEEEEHHHHHH---HHHhc--CCCCccceEEEEEEEec
Confidence 999999888764211211 11222 34567888888766443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.59 E-value=1.7e-05 Score=67.61 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=77.4
Q ss_pred CCCEEEEEEEEEeeeEeccCCCCCCccceeEeEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeeccCc-ccccCC
Q 047795 151 QKPTIRMKSISFNQFVVQAGADFSGVATQMVTVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTIRK-FYQSRK 229 (314)
Q Consensus 151 ~~P~fsV~s~~v~~f~v~~gsd~sgvpt~~Ls~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~-FyQ~~k 229 (314)
++|+++|.++.+..+... ...+.++|+++|||. +.|.+......|.-.|..||+|..+. +.-+++
T Consensus 20 ~~P~v~v~~v~~~~~~~~-------------~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~ 85 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-------------SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAK 85 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-------------EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred CCCEEEEEEeEEeccCcc-------------eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCC
Confidence 789999988888765443 356778999999998 99999999999988999999999875 777999
Q ss_pred CeeEEEEEEEEeeeeccCCCCccccccc-cccccEEEEEEEEEEE
Q 047795 230 SQRSVTVMMKGSHIPLYGGGASLSSLNG-ALVEPVPLTLNFMVRA 273 (314)
Q Consensus 230 s~~~v~v~v~g~~vpL~g~G~~L~~~~~-~~~g~VpL~l~~~~r~ 273 (314)
+++++.+.+...-..|. +.+++ .....++.+|++.+.+
T Consensus 86 g~~~v~vpv~v~~~~l~------~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 86 DMTALDIPVVVPYSILF------NLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp SEEEEEECCCEEHHHHH------HHHHHHHHHSEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEHHHHH------HHHHhcccCCcccEEEEEEEEE
Confidence 99999887765421111 11222 2456788888777744
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=96.82 E-value=0.0058 Score=51.06 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=53.4
Q ss_pred eEEEEEEEEEecCCceeeEEEcCeeEEEEECcEEEeeec-cCcccccCCCeeEEEEEEEEeee
Q 047795 182 TVNCTVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGT-IRKFYQSRKSQRSVTVMMKGSHI 243 (314)
Q Consensus 182 s~N~tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~-lp~FyQ~~ks~~~v~v~v~g~~v 243 (314)
...+.+.|.++|||. +.+.++.....+...|..||+|. ...+--++.+.+++.+.+..+.-
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~ 78 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNS 78 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchH
Confidence 467779999999998 99999999999999999999997 56788899999999988887743
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.73 E-value=5 Score=30.13 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHhheeee
Q 047795 126 LLTFVVGFIVLFSMFSLILWG 146 (314)
Q Consensus 126 ~l~~ll~~vll~gi~~LIlwl 146 (314)
+++.+++.++++|+++|++|-
T Consensus 13 Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334455678888998888884
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=48.34 E-value=9 Score=25.42 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhheeee
Q 047795 128 TFVVGFIVLFSMFSLILWG 146 (314)
Q Consensus 128 ~~ll~~vll~gi~~LIlwl 146 (314)
..+++.++++|+++|++|-
T Consensus 14 ~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 14 LSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445668888999999883
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=39.47 E-value=13 Score=24.67 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhheee--eeeeCCCC
Q 047795 130 VVGFIVLFSMFSLILW--GASKPQKP 153 (314)
Q Consensus 130 ll~~vll~gi~~LIlw--lv~RP~~P 153 (314)
+++-+++++++.+++| +.|+-++|
T Consensus 17 ~l~GLllL~li~~~LwK~GFFkR~~~ 42 (42)
T 2k1a_A 17 VLGGLLLLTILVLAMWKVGFFKRNRP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 3345666677788888 56665554
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=38.67 E-value=11 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhheee--eeeeCCCC
Q 047795 128 TFVVGFIVLFSMFSLILW--GASKPQKP 153 (314)
Q Consensus 128 ~~ll~~vll~gi~~LIlw--lv~RP~~P 153 (314)
..+++-+++++++++++| +.|+-++|
T Consensus 14 ~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 334455667778888898 66766655
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.49 E-value=11 Score=26.31 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhheee--eeeeCCCC
Q 047795 130 VVGFIVLFSMFSLILW--GASKPQKP 153 (314)
Q Consensus 130 ll~~vll~gi~~LIlw--lv~RP~~P 153 (314)
+++-+++++++++++| +.|+-++|
T Consensus 19 vl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 3445667778888888 56766554
No 9
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=33.29 E-value=47 Score=28.27 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=39.5
Q ss_pred ccceeEeEEE----EEEEEEecCCceeeEEEcCeeEEEEECcEEEeeeccCcccccCCCeeEE
Q 047795 176 VATQMVTVNC----TVKFTFRNTATFFGVHVTSTPLDLYYSQLTVATGTIRKFYQSRKSQRSV 234 (314)
Q Consensus 176 vpt~~Ls~N~----tv~l~~~NPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~FyQ~~ks~~~v 234 (314)
+|++.+++++ +++++-+| |..+-+++... +...+.+..++.+.+|.-|+|++-+..|
T Consensus 62 ~pt~s~t~q~gnG~tl~ltkk~-~d~V~v~~~G~-vt~i~sg~~~~g~wvp~~f~P~~~~slv 122 (165)
T 3d8m_A 62 LPVQTLTVEAGNGLQLQLTKKN-NDLVIVRFFGS-VSNIQKGWNMSGTWVDRPFRPAAVQSLV 122 (165)
T ss_dssp CCEEEEEEECSTTEEEEEEEET-TTEEEEEEEEE-ECSBCTTCBCCSCCCCGGGCCSSCEEEE
T ss_pred ccceeEEEEeCCCcEEEEEEcc-CCEEEEEEeeE-EEeEEccceeecceecCCccccceeEee
Confidence 3555566544 47788888 77666666433 3666788888888999988887775543
No 10
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=33.15 E-value=2.5 Score=30.61 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH--hheeeeee
Q 047795 130 VVGFIVLFSMF--SLILWGAS 148 (314)
Q Consensus 130 ll~~vll~gi~--~LIlwlv~ 148 (314)
+..+++++|++ +|++|.++
T Consensus 34 ~Y~lvFvlGl~GN~lvl~v~~ 54 (64)
T 2lot_A 34 IYMLVFLLGTTGNGLVLWTVF 54 (64)
T ss_dssp HHHHTTTTTTTSSSSHHHHHH
T ss_pred HHHHHHHHHHhhhhhheeeee
Confidence 33445555555 45566543
No 11
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=31.80 E-value=15 Score=23.26 Aligned_cols=16 Identities=19% Similarity=0.650 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhheeee
Q 047795 131 VGFIVLFSMFSLILWG 146 (314)
Q Consensus 131 l~~vll~gi~~LIlwl 146 (314)
++.++++|++++|+|+
T Consensus 9 l~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 9 LAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3456666777777774
No 12
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=30.50 E-value=7.9 Score=22.84 Aligned_cols=9 Identities=56% Similarity=0.545 Sum_probs=7.0
Q ss_pred ccCCccccc
Q 047795 5 LSKTDSEAS 13 (314)
Q Consensus 5 ~~~~ds~~t 13 (314)
|.||||||.
T Consensus 3 hkktdsevq 11 (28)
T 1nwd_B 3 HKKTDSEVQ 11 (28)
T ss_dssp SSCCHHHHH
T ss_pred CccchHHHH
Confidence 778888874
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.88 E-value=26 Score=23.40 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=8.7
Q ss_pred HHHHHHHhheeeeeeeCC
Q 047795 134 IVLFSMFSLILWGASKPQ 151 (314)
Q Consensus 134 vll~gi~~LIlwlv~RP~ 151 (314)
++++.++++++|+.+|=+
T Consensus 21 v~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333344455556555443
No 14
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=20.69 E-value=26 Score=32.32 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=16.2
Q ss_pred HHHHHHHhheeee---eeeCCCCEEE
Q 047795 134 IVLFSMFSLILWG---ASKPQKPTIR 156 (314)
Q Consensus 134 vll~gi~~LIlwl---v~RP~~P~fs 156 (314)
++|+|+|++.+|+ .+-|+.|++.
T Consensus 27 ~~La~lFa~~m~v~l~TLd~~~Pkyq 52 (286)
T 3kdp_B 27 GCLAGIFIGTIQVMLLTISEFKPTYQ 52 (286)
T ss_dssp HHHHHHHHHHHHGGGSCSCSSSCSCC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCccc
Confidence 3456666666664 4789999988
No 15
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=25.48 E-value=22 Score=23.19 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=12.7
Q ss_pred HHHHHhheeeeeeeCCCCEEE
Q 047795 136 LFSMFSLILWGASKPQKPTIR 156 (314)
Q Consensus 136 l~gi~~LIlwlv~RP~~P~fs 156 (314)
++.+++||+..+.--++|++.
T Consensus 19 vi~iisLIiLi~~w~qKPrYe 39 (39)
T 2l6w_A 19 VLTIISLIILIMLWQKKPRYE 39 (39)
Confidence 334556666666666788763
Done!