BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047796
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 286 bits (731), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 146/240 (60%), Positives = 173/240 (72%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LPGP TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/242 (58%), Positives = 171/242 (70%), Gaps = 3/242 (1%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T +I SEK A PN NSARGF V+DN+K A+E ACP VVSC+D+L +A+E SV+L+GGPSW
Sbjct: 59 TGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
V LGRRDS TAN A AN +P P ++L + F VG N N DLVALSGAHTFGRA+C
Sbjct: 119 TVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTN-DLVALSGAHTFGRARC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
F RL++F+ TG PDPTL+ TLL L++LCPQ G+ + N D+ TPD FDN YF+NL
Sbjct: 178 GVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANL 237
Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKG--R 238
+ GLLQSDQELFST G+ T AIV F NQ FF+ F SMI MGN+ PL G R
Sbjct: 238 QSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIR 297
Query: 239 LD 240
LD
Sbjct: 298 LD 299
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 58 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 58 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 58 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 284 bits (726), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 58 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 145/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 283 bits (723), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 172/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 58 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG H+FG+ QC
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 171/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L + D++TP +FDNKY+ NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 171/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 58 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVAL G HTFG+ QC
Sbjct: 118 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQC 177
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
RF RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 178 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 281 bits (718), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 171/240 (71%), Gaps = 1/240 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T + +EK A N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS A LAN LP P TL LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
R RLY+F+NTG PDPTL+ T L+ LR LCP GN L +FD++TP +FDNKY+ NL
Sbjct: 179 RSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
+KGL+QSDQELFS+P A DT +V F + FF FV +M RMGN+ PL +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 267 bits (683), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/242 (58%), Positives = 168/242 (69%), Gaps = 3/242 (1%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
+ +I SEK A PN NSARGF V+DN+K A+E ACP VVSC D+L +A++ SV+LSGGPSW
Sbjct: 60 SGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSW 119
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
V LGRRD+ TAN+A AN +P P+ L + S F VG N N DLVALSGAHTFGRA C
Sbjct: 120 TVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTN-DLVALSGAHTFGRATC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
F RL++F+ G PDPTL+ TLL L+ELCPQ G G N D+ TPD FDN YF+NL
Sbjct: 179 GVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNL 238
Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKG--R 238
+ GLLQSDQELFST G+ T AIV F NQ FF+ F SMI MGN+ PL G R
Sbjct: 239 QSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIR 298
Query: 239 LD 240
LD
Sbjct: 299 LD 300
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 260 bits (664), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/239 (59%), Positives = 164/239 (68%), Gaps = 1/239 (0%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T I+SE+ A PN NS RG +V++++K AVE +CP VSCADIL IAAE + L GGP W
Sbjct: 58 TDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VPLGRRDS TANR LANQ LP P L LK+SF G N DLV LSG HTFGRA+C
Sbjct: 118 PVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLN-TLDLVTLSGGHTFGRARC 176
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
F RLY+F+NTG PDPTL+ T L+ LR CPQ G L N D+ TPD FDN+Y+SNL
Sbjct: 177 STFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNL 236
Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
GLLQSDQELFSTPGADT IV F NQN FF NF SMI+MGN+ L +G +
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEI 295
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 240 bits (612), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 153/228 (67%), Gaps = 4/228 (1%)
Query: 5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPL 64
DSEK A PN NSARGFEVID +KAAVE ACP VVSCADILT+AA SV LSGGP W V L
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 65 GRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFR 124
GR+D AN+ AN LP P + LD + + F V N D+VALSGAHTFG+A+C F
Sbjct: 119 GRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNIT-DVVALSGAHTFGQAKCAVFS 176
Query: 125 GRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRK 184
RL++F G PD TL+ +LL L+ +CP GGN + A D T D FDN YF NL K
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGK 236
Query: 185 GLLQSDQELFSTPGA--DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLK 230
GLL SDQ LFS+ A T +VE + R+Q+ FF++F +MIRMGN+
Sbjct: 237 GLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS 284
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 144/239 (60%), Gaps = 10/239 (4%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T N EK A PN NS RGFEVID +K+ VE CP VVSCADIL +AA SV GG SW
Sbjct: 58 TSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASW 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
V LGRRDS TA+ + AN LP P L L S+F N G +LV LSGAHT G+AQC
Sbjct: 118 NVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTK-ELVTLSGAHTIGQAQC 176
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
FR R+Y+ +N +D T K L+ CP G L+ FDV TP+ FDN Y+ NL
Sbjct: 177 TAFRTRIYNESN-------IDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINL 229
Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
R +KGLL SDQ+LF+ G T + V + N F +F +MI+MGNL PL G++
Sbjct: 230 RNKKGLLHSDQQLFN--GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 286
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 134/241 (55%), Gaps = 5/241 (2%)
Query: 1 TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
T N +EK A PNN S RGFEVI K+AVE ACP+ VSCADIL AA S L+G ++
Sbjct: 58 TANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITY 117
Query: 61 AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
VP GRRD + + AN ++P P L +SF N + ++V LSGAH+ G A C
Sbjct: 118 QVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTAD-EMVTLSGAHSIGVAHC 176
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGN--GGVLANFDVKTPDVFDNKYFS 178
F RLY+FN+ DPTL + LR CP + + D+ TP V DN Y++
Sbjct: 177 SSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYT 236
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGR 238
++L GLL SDQ L + A+ +A V+ N A+ F +M++MG ++ L +G
Sbjct: 237 GVQLTLGLLTSDQALVTE--ANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGE 294
Query: 239 L 239
+
Sbjct: 295 I 295
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 13/224 (5%)
Query: 11 APNNNSAR--GFEVIDNMKAAVEKAC-PRVVSCADILTIAAERSVALSGGPSWAVPLGRR 67
AP N + R F+ +++++ +E+ C VVSC+DIL +AA SV +SGGP + VPLGRR
Sbjct: 74 APPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLGRR 133
Query: 68 DSRT-ANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGR 126
DSR+ A+ LPGPS + L + +G D DLV +SG HT G A C F R
Sbjct: 134 DSRSFASTQDVLSDLPGPSSNVQSLLALLGRLG-LDATDLVTISGGHTIGLAHCSSFEDR 192
Query: 127 LYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGL 186
L+ +PDPT+ T L +L+ CP G DV+TP+VFDNKY+ +L R+GL
Sbjct: 193 LFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTV-LDVRTPNVFDNKYYIDLVNREGL 246
Query: 187 LQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLK 230
SDQ+LF+ A T IVE F ++Q FF+ F S+ +MG ++
Sbjct: 247 FVSDQDLFTN--AITRPIVERFAQSQQDFFEQFGVSIGKMGQMR 288
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 38 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLP--GPSDTLDVLKSSF 95
V+ AD+ +A+ ++ +GGP + GR D + +LP GP L+ F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+G ND ++VALSGAHT GR++ D + GKP+ + P
Sbjct: 147 YRMGLNDK-EIVALSGAHTLGRSRP--------DRSGWGKPETKYTKD--------GPGA 189
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRLRKG----LLQSDQELFSTPGADTAAIVEDFGRN 211
G +K FDN YF +++ R+ +L +D LF P A E + +
Sbjct: 190 PGGQSWTAQWLK----FDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYA--EKYAAD 243
Query: 212 QNAFFKNFVTSMIRMGNL 229
AFFK++ + ++ NL
Sbjct: 244 PEAFFKDYAEAHAKLSNL 261
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 18 RGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALA 77
+G ++ ++K P++ S AD+ +AA ++ GGP+ GR D++ +
Sbjct: 67 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 78 NQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRF 122
+ +LP S T ++ FR +G ND + VAL GAHT G F
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGETHIEF 169
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 18 RGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALA 77
+G ++ ++K P++ S AD+ +AA ++ GGP+ GR D++ +
Sbjct: 67 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 78 NQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRF 122
+ +LP S T ++ FR +G ND + VAL GAHT G F
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGECHIEF 169
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 18 RGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALA 77
+G ++ ++K P++ S AD+ +AA ++ GGP+ GR D++ +
Sbjct: 66 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 124
Query: 78 NQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRF 122
+ +LP S T ++ FR +G ND + VAL GAHT G F
Sbjct: 125 DGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGECHIEF 168
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 52/218 (23%)
Query: 19 GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALAN 78
G ++ + +++ P +VS AD +A +V ++GGP GR D
Sbjct: 72 GLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPGREDK---PEPPPE 127
Query: 79 QKLPGPSDTLDVLKSSF-RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPD 137
+LP + D L+ F + +G +D D+VALSG HT G A
Sbjct: 128 GRLPDATKGSDHLRDVFGKAMGLSDQ-DIVALSGGHTIGAAHK----------------- 169
Query: 138 PTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQEL 193
+R+ G G +N P +FDN YF+ L + GLLQ SD+ L
Sbjct: 170 ---ERS-----------GFEGPWTSN-----PLIFDNSYFTELLTGEKDGLLQLPSDKAL 210
Query: 194 FSTPGADTA--AIVEDFGRNQNAFFKNFVTSMIRMGNL 229
+ D+ +VE + +++ FF ++ + +++ L
Sbjct: 211 LT----DSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 173
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 226
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKE-------------------------------ASG 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 173
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 226
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 173
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 226
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 173
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 226
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPP---PEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 37 VVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF- 95
++S AD +A +V ++GGP GR D +LP + D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 96 RNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQG 155
+ +G D D+VALSG HT G A +R+ G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHK--------------------ERS-----------G 185
Query: 156 GNGGVLANFDVKTPDVFDNKYFSNLRL--RKGLLQ--SDQELFSTPGADTAAIVEDFGRN 211
G +N P +FDN YF+ L ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP--VFRPLVDKYAAD 238
Query: 212 QNAFFKNFVTSMIRMGNL 229
++AFF ++ + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAHT G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P P+VFDN ++ NL
Sbjct: 184 ------NSGYEGPW--------------------------TANPNVFDNSFYLNLLNEDW 211
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VALSGAHT G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALSGAHTLGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P +VFDN ++ NL
Sbjct: 184 ------NSGYEGPW--------------------------TANNNVFDNSFYLNLLNEDW 211
Query: 181 RLRK------------GLLQ--SDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K G LQ +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYLQLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAHT G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N G +D T +VFDN ++ NL
Sbjct: 184 -------------------------------NSGYEGPWDA-TNNVFDNSFYLNLLNEDW 211
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY--LSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 95/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAHT G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P +VFDN ++ NL
Sbjct: 184 ------NSGYEGPW--------------------------TANNNVFDNSFYLNLLNEDW 211
Query: 181 RLRK------------GLLQ--SDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K G LQ +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYLQLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAHT G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P +VFDN ++ NL
Sbjct: 184 ------NSGYEGPW--------------------------TANNNVFDNSFYLNLLNEDW 211
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 55/235 (23%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALG--------- 180
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKG 185
+T LK+ P G V N + + N N +L K
Sbjct: 181 ----------------KTHLKRSGYEGPWGAANNVFTN------EFYLNLLNENWKLEKN 218
Query: 186 --------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 219 DANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 55/235 (23%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALG--------- 178
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKG 185
+T LK+ P G V N + + N N +L K
Sbjct: 179 ----------------KTHLKRSGYEGPWGAANNVFTN------EFYLNLLNENWKLEKN 216
Query: 186 --------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 217 DANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 55/235 (23%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKG 185
N+G P G V N + + N N +L K
Sbjct: 184 ------NSGYE---------------GPWGAANNVFTN------EFYLNLLNENWKLEKN 216
Query: 186 --------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 217 DANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNCFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 74 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 128
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 129 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 182
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 183 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 229
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 230 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P GG N VF N+++ NL
Sbjct: 186 ------NSGYEGP-------------------GGAANN-------VFTNEFYLNLLNEDW 213
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P GG N VF N+++ NL
Sbjct: 184 ------NSGYEGP-------------------GGAANN-------VFTNEFYLNLLNEDW 211
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 36/204 (17%)
Query: 30 VEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLD 89
+ K P +S D+ ++ +V GP GR D+ + N +LP D
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 154
Query: 90 VLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPT-------LDR 142
+++ F+ + ND ++VAL GAH G+ + N+G P +
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAANNVFTNE 203
Query: 143 TLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTA 202
L L E N +D K+ + +L +D L P
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYM--------------MLPTDYSLIQDP--KYL 247
Query: 203 AIVEDFGRNQNAFFKNFVTSMIRM 226
+IV+++ +Q+ FFK+F + ++
Sbjct: 248 SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P GG N VF N+++ NL
Sbjct: 184 ------NSGYEGP-------------------GGAANN-------VFTNEFYLNLLNEDW 211
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P GG N VF N+++ NL
Sbjct: 181 ------NSGYEGP-------------------GGAANN-------VFTNEFYLNLLNEDW 208
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 31/223 (13%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR--FF 123
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ + +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLKRSGY 189
Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
G NN + L+ LL + +L N +D K+ +
Sbjct: 190 EGPWGAANNVFTNEFYLN--LLNEDWKLEKNDANN---EQWDSKSGYM------------ 232
Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 --MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 31/223 (13%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR--FF 123
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ + +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLKRSGY 184
Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
G NN + L+ LL + +L N +D K+ +
Sbjct: 185 EGPWGAANNVFTNEFYLN--LLNEDWKLEKNDANN---EQWDSKSGYM------------ 227
Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 --MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 73 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 127
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 128 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 181
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P GG N VF N+++ NL
Sbjct: 182 ------NSGYEGP-------------------GGAANN-------VFTNEFYLNLLNEDW 209
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 210 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 68 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 122
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR--FF 123
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ + +
Sbjct: 123 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLKRSGY 180
Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
G NN + L L E N +D K+ +
Sbjct: 181 EGPFGAANNV-----FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------------ 223
Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 224 --MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 74 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 128
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR--FF 123
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ + +
Sbjct: 129 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLKRSGY 186
Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
G NN + L L E N +D K+ +
Sbjct: 187 EGPFGAANNV-----FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------------ 229
Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 230 --MLPTDYSLIQDP--KYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P G N VF N+Y+ NL
Sbjct: 181 ------NSGYEGPW-------------------GAANN-------VFTNEYYLNLLNEDW 208
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G PQG AN +VF N+++ NL
Sbjct: 181 ------NSGYE---------------GPQGA-----AN------NVFTNEFYLNLLNEDW 208
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 209 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G PQG AN +VF N+++ NL
Sbjct: 186 ------NSGYE---------------GPQGA-----AN------NVFTNEFYLNLLNEDW 213
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 214 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR 121
R D+ + N +LP D +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYI------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALKGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ + +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTELK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 65/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G P GG N VF N+++ NL
Sbjct: 184 ------NSGYEGP-------------------GGAANN-------VFTNEFYLNLLNEDW 211
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L ++ L P +IV+++ +Q+ FFK+F + ++
Sbjct: 212 KLEKNDANNEQWDSKSGYMMLPTNYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPYGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRAG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGCANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 78 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 132
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 133 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 186
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 187 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 233
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 234 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 75 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 130 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 183
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 184 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 230
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 231 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 228 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 185
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 186 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM------- 232
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 -------MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 180
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 181 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YM 227
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L L+Q + L +IV+++ +Q+ FFK+F + ++
Sbjct: 228 HLPTDYSLIQDPKYL---------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 31/223 (13%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR--FF 123
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ + +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLKNSGY 189
Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
G NN + L+ LL + +L N +D K+ +
Sbjct: 190 EGPFGAANNVFTNEFYLN--LLNEDWKLEKNDANN---EQWDSKSGYM------------ 232
Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 233 --MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 67/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 78 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 132
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 133 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 186
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G +GG +VF N+++ NL
Sbjct: 187 ------NSGY------------------EGGGAN----------NVFTNEFYLNLLNEDW 212
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 213 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 29/221 (13%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 72 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+
Sbjct: 127 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHL----- 179
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKG 185
+ + G + + L L E N +D K+ +
Sbjct: 180 KNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYM-------------- 225
Query: 186 LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 226 MLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 67/240 (27%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 73 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 127
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 128 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 181
Query: 126 RLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL----- 180
N+G +GG +VF N+++ NL
Sbjct: 182 ------NSGY------------------EGGGAN----------NVFTNEFYLNLLNEDW 207
Query: 181 RLRKG--------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
+L K +L +D L P +IV+++ +Q+ FFK+F + ++
Sbjct: 208 KLEKNDANNEQWDSKSGYMMLPTDYSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 41/228 (17%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 78 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 132
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRG 125
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 133 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK---- 186
Query: 126 RLYDFNNTGKPDPT-------LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFS 178
N+G P + L L E N +D K+ +
Sbjct: 187 ------NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG-------YM 233
Query: 179 NLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM 226
L L+Q + L +IV+++ +Q+ FFK+F + ++
Sbjct: 234 MLPTEYSLIQDPKYL---------SIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P + S D+ ++ +V GP G
Sbjct: 77 KEFNDPSNAGLQNGFKFLE----PIHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR 121
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 132 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 7 EKFAAPNNNSAR-GFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLG 65
++F P+N + GF+ ++ + K P +S D+ ++ +V GP G
Sbjct: 78 KEFNDPSNAGLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCG 132
Query: 66 RRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCR 121
R D+ + N +LP +++ F+ + ND ++VAL GAH G+ +
Sbjct: 133 RVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 83/230 (36%), Gaps = 65/230 (28%)
Query: 21 EVIDNMKAAVEKACPRVVSCADILTIAAERSVA-LSGGPSWAVPLGRRDSRTANRALANQ 79
E++ K V K +S D + A V+ GG LGR D+ A+ +
Sbjct: 83 EIVSAQKPFVAK---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDH 136
Query: 80 KLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPT 139
+PGP D++D + + + G + ++V L +H+ A K DP+
Sbjct: 137 LVPGPFDSVDSILARMGDAGFS-PVEVVWLLASHSIAAAD---------------KVDPS 180
Query: 140 LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGL------------- 186
+ T FD TP+VFD+++F +L+ L
Sbjct: 181 IPGT-------------------PFD-STPEVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 187 -------LQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNL 229
LQSD L P TA + NQ F +M +M L
Sbjct: 221 PLQGEIRLQSDHLLARDP--QTACEWQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 83/230 (36%), Gaps = 65/230 (28%)
Query: 21 EVIDNMKAAVEKACPRVVSCADILTIAAERSVA-LSGGPSWAVPLGRRDSRTANRALANQ 79
E++ K V K +S D + A V+ GG LGR D+ A+ +
Sbjct: 83 EIVSAQKPFVAK---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDH 136
Query: 80 KLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPT 139
+PGP D++D + + + G + ++V L +H+ A K DP+
Sbjct: 137 LVPGPFDSVDSILARMGDAGFS-PVEVVWLLASHSIAAAD---------------KVDPS 180
Query: 140 LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGL------------- 186
+ T FD TP+VFD+++F +L+ L
Sbjct: 181 IPGT-------------------PFD-STPEVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 187 -------LQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNL 229
LQSD L P TA + NQ F +M +M L
Sbjct: 221 PLQGEIRLQSDHLLARDP--QTACEWQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 182 LRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKN---FVTSMIRMG 227
+R G L TPG+D A ++E G N +AF K F +S I G
Sbjct: 76 IRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGG 124
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 2 KNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWA 61
+ I+ F AP+ N RGF I C ++C D + ER ++ + G ++A
Sbjct: 91 QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKD----SGER-LSHAVGCAFA 145
Query: 62 VPLGRRDSRT 71
V L R+ RT
Sbjct: 146 VCLERKQRRT 155
>pdb|4EKJ|A Chain A, Crystal Structure Of A Monomeric Beta-xylosidase From
Caulobacter Crescentus Cb15
Length = 500
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 152 CPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRN 211
P G G++ ++ P F KY + ++ R+ L+ +D ++F+ D AIV R
Sbjct: 332 APFQGGFGLMNPQGIRKPSWFAYKYLNAIKGRE-LVCADDQVFAARDGDRVAIVAYAWRQ 390
Query: 212 QNAFFKN--FVTSMIRMGNLKPLQ 233
+ N F T + +++PL+
Sbjct: 391 PDQKVSNRPFYTKLHPASDVEPLK 414
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 82/230 (35%), Gaps = 65/230 (28%)
Query: 21 EVIDNMKAAVEKACPRVVSCADILTIAAERSVA-LSGGPSWAVPLGRRDSRTANRALANQ 79
E++ K V K +S D + A V+ GG LGR D+ A+ +
Sbjct: 83 EIVSAQKPFVAK---HNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDH 136
Query: 80 KLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPT 139
+P P D++D + + + G + ++V L +H+ A K DP+
Sbjct: 137 LVPEPFDSVDSILARMGDAGFS-PVEVVWLLASHSIAAAD---------------KVDPS 180
Query: 140 LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGL------------- 186
+ T FD TP VFD+++F +L+ L
Sbjct: 181 IPGT-------------------PFD-STPGVFDSQFFIETQLKGRLFPGTADNKGEAQS 220
Query: 187 -------LQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNL 229
LQSD L P TA + F NQ F +M +M L
Sbjct: 221 PLQGEIRLQSDHLLARDP--QTACEWQSFVNNQPKIQNRFAATMSKMALL 268
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 82 PGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQ 119
P P+ + ++ +F +G ND + ++G H FG+
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTH 298
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 21 EVIDNMKAAVEKACPRVVSCADILTIAAERSVA-LSGGPSWAVPLGRRDSRTANRALANQ 79
EV+ K + K V+ D + A V+ G P LGR + A +A +
Sbjct: 90 EVVAIQKPFIAK---HGVTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPE---ATQAAPDG 143
Query: 80 KLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRA 118
+P P T+D + + + G D + V L AH+ A
Sbjct: 144 LVPEPFHTIDQVLARMLDAGGFDEIETVXLLSAHSIAAA 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,379,651
Number of Sequences: 62578
Number of extensions: 313100
Number of successful extensions: 777
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 175
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)