Query 047796
Match_columns 240
No_of_seqs 135 out of 1108
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 9.2E-79 2E-83 548.0 18.1 231 5-240 82-317 (324)
2 cd00693 secretory_peroxidase H 100.0 6.6E-76 1.4E-80 527.8 19.4 233 3-240 60-292 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 6.1E-58 1.3E-62 407.6 16.2 188 5-239 61-252 (289)
4 PF00141 peroxidase: Peroxidas 100.0 3.2E-58 6.9E-63 400.4 7.7 190 5-211 41-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 4.8E-56 1E-60 391.0 15.0 184 5-232 60-251 (253)
6 PLN02879 L-ascorbate peroxidas 100.0 3.5E-55 7.5E-60 383.9 16.0 182 4-232 63-248 (251)
7 PLN02364 L-ascorbate peroxidas 100.0 7.1E-55 1.5E-59 382.4 16.3 182 4-232 62-248 (250)
8 cd00649 catalase_peroxidase_1 100.0 4.6E-52 1E-56 381.8 16.9 220 4-237 100-401 (409)
9 cd00692 ligninase Ligninase an 100.0 7E-51 1.5E-55 368.2 15.8 180 6-232 76-276 (328)
10 TIGR00198 cat_per_HPI catalase 100.0 3.8E-50 8.3E-55 389.9 17.9 217 4-234 110-405 (716)
11 cd00314 plant_peroxidase_like 100.0 3.5E-48 7.6E-53 341.7 13.4 185 5-228 49-255 (255)
12 PRK15061 catalase/hydroperoxid 100.0 1.6E-46 3.5E-51 362.9 17.4 220 4-237 112-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.4E-38 5.1E-43 277.6 11.6 168 16-228 86-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 4.5E-35 9.9E-40 259.9 13.6 186 4-230 60-296 (297)
15 PRK15061 catalase/hydroperoxid 100.0 6.8E-30 1.5E-34 247.7 14.3 186 4-231 485-722 (726)
16 TIGR00198 cat_per_HPI catalase 100.0 4.4E-30 9.5E-35 250.1 12.6 183 4-231 478-710 (716)
17 COG0376 KatG Catalase (peroxid 100.0 1.2E-29 2.6E-34 236.7 13.2 213 4-230 125-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 2.3E-12 5E-17 121.6 11.8 181 5-230 496-725 (730)
19 PF11895 DUF3415: Domain of un 65.0 6 0.00013 29.0 2.4 19 214-232 2-20 (80)
20 PRK12309 transaldolase/EF-hand 50.6 1.5E+02 0.0033 28.0 9.8 65 38-103 155-225 (391)
21 PTZ00411 transaldolase-like pr 47.5 1.3E+02 0.0028 27.9 8.6 49 55-103 180-231 (333)
22 TIGR00874 talAB transaldolase. 34.2 3.5E+02 0.0075 24.9 9.2 142 51-218 164-312 (317)
23 PF00043 GST_C: Glutathione S- 30.4 70 0.0015 22.5 3.4 23 34-56 51-73 (95)
24 PLN02161 beta-amylase 28.7 89 0.0019 30.7 4.5 33 204-240 234-271 (531)
25 PRK13859 type IV secretion sys 28.0 26 0.00057 23.5 0.6 29 43-71 9-40 (55)
26 COG1105 FruK Fructose-1-phosph 22.8 2.1E+02 0.0045 26.3 5.6 51 80-154 105-157 (310)
27 PLN00017 photosystem I reactio 22.6 46 0.00099 24.7 1.1 20 208-227 38-57 (90)
28 PF13521 AAA_28: AAA domain; P 20.1 37 0.0008 27.1 0.2 13 107-119 2-14 (163)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=9.2e-79 Score=547.98 Aligned_cols=231 Identities=43% Similarity=0.759 Sum_probs=218.4
Q ss_pred chhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCCC
Q 047796 5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGP 84 (240)
Q Consensus 5 ~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p 84 (240)
..||++++|. +++||++|+.||++||++||++|||||||+|||||||+++|||.|+|++||||+++|...++. +||.|
T Consensus 82 ~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p 159 (324)
T PLN03030 82 NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGF 159 (324)
T ss_pred cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCC
Confidence 4799999998 789999999999999999999999999999999999999999999999999999998776664 89999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhhCCCCCCCCcccc
Q 047796 85 SDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTG-KPDPTLDRTLLKQLRELCPQGGNGGVLAN 163 (240)
Q Consensus 85 ~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 163 (240)
+.++++|++.|+++||+.+ |||+||||||||++||.+|.+|||||.+++ .+||+||+.|+..|+..||..++..+.++
T Consensus 160 ~~~~~~l~~~F~~~Gl~~~-DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~ 238 (324)
T PLN03030 160 TDSIDVQKQKFAAKGLNTQ-DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIA 238 (324)
T ss_pred CCCHHHHHHHHHHcCCCHH-HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCcccc
Confidence 9999999999999999999 999999999999999999999999998875 47999999999999999996433334688
Q ss_pred cCCCCCCccChHHHHHhhhcccccccccccccCCccchHHHHHHhhhCh----HHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 047796 164 FDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQ----NAFFKNFVTSMIRMGNLKPLQEIKGRL 239 (240)
Q Consensus 164 ld~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~~v~~yA~~~----~~F~~~Fa~Am~Km~~l~v~tg~~Gei 239 (240)
+|..||.+|||+||+||+.++|+|+|||+|+.|+ +|+++|+.||.|+ +.|+++|++||+||++|+|+||.+|||
T Consensus 239 lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEI 316 (324)
T PLN03030 239 LDTGSSNRFDASFFSNLKNGRGILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEI 316 (324)
T ss_pred CCCCCCcccccHHHHHHHhcCCCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCce
Confidence 9999999999999999999999999999999999 9999999999875 599999999999999999999999999
Q ss_pred C
Q 047796 240 D 240 (240)
Q Consensus 240 R 240 (240)
|
T Consensus 317 R 317 (324)
T PLN03030 317 R 317 (324)
T ss_pred e
Confidence 8
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.6e-76 Score=527.77 Aligned_cols=233 Identities=52% Similarity=0.858 Sum_probs=223.1
Q ss_pred CcchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCC
Q 047796 3 NIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLP 82 (240)
Q Consensus 3 ~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP 82 (240)
++.+|+++++|. +++||++|+.||++||+.||++|||||||+||||+||+++|||.|+|++||+|+.++....+ .+||
T Consensus 60 ~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP 137 (298)
T cd00693 60 NNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLP 137 (298)
T ss_pred CCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCC
Confidence 457899999999 68999999999999999999999999999999999999999999999999999998776555 6899
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccc
Q 047796 83 GPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLA 162 (240)
Q Consensus 83 ~p~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 162 (240)
.|+.+++++++.|+++||+.+ |||+|+||||||++||.+|.+|+|||+|++.+||+||+.|+..|++.||..++..+.+
T Consensus 138 ~p~~~~~~l~~~F~~~G~~~~-d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 216 (298)
T cd00693 138 SPFFSVSQLISLFASKGLTVT-DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLV 216 (298)
T ss_pred CcccCHHHHHHHHHHcCCCHH-HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccc
Confidence 999999999999999999999 9999999999999999999999999999989999999999999999999755556678
Q ss_pred ccCCCCCCccChHHHHHhhhcccccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccC
Q 047796 163 NFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRLD 240 (240)
Q Consensus 163 ~ld~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tg~~GeiR 240 (240)
++|..||.+|||+||++|+.++|+|.||++|+.|+ +|+++|++||.||+.|+++|+.||+||++|+|+||.+||||
T Consensus 217 ~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~--~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR 292 (298)
T cd00693 217 PLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIR 292 (298)
T ss_pred cCCCCCCCccccHHHHHHHhcccCccCCHHhccCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccC
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999998
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=6.1e-58 Score=407.55 Aligned_cols=188 Identities=30% Similarity=0.511 Sum_probs=172.4
Q ss_pred chhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCCC
Q 047796 5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGP 84 (240)
Q Consensus 5 ~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p 84 (240)
..|+++++|.++.+||++|+.||+++ | +|||||||+||||+||+.+|||.|+|++||+|+++++ ++.+||.|
T Consensus 61 ~~E~~~~~N~gL~~g~~vid~iK~~~----~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p 132 (289)
T PLN02608 61 EEEYSHGANNGLKIAIDLCEPVKAKH----P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDA 132 (289)
T ss_pred ccccCCccccchHHHHHHHHHHHHHc----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCC
Confidence 46999999995557999999999997 4 8999999999999999999999999999999999885 35689999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccccc
Q 047796 85 SDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANF 164 (240)
Q Consensus 85 ~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~l 164 (240)
+.+++++++.|+++||+++ |||+|+||||||++||. |+ +|.|+ +
T Consensus 133 ~~~~~~l~~~F~~~Gl~~~-D~VaLsGAHTiG~ahc~----r~-g~~g~-------------------------~----- 176 (289)
T PLN02608 133 KKGAKHLRDVFYRMGLSDK-DIVALSGGHTLGRAHPE----RS-GFDGP-------------------------W----- 176 (289)
T ss_pred CCCHHHHHHHHHHcCCCHH-HHhhhcccccccccccc----CC-CCCCC-------------------------C-----
Confidence 9999999999999999999 99999999999999994 54 44321 1
Q ss_pred CCCCCCccChHHHHHhhhc--ccc--cccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 047796 165 DVKTPDVFDNKYFSNLRLR--KGL--LQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239 (240)
Q Consensus 165 d~~tp~~FDn~Yy~~l~~~--~gl--l~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tg~~Gei 239 (240)
+ .||.+|||+||++++.+ +|+ |+||++|+.|+ +|+++|+.||.|++.|+++|+.||+||++|+|+||++||+
T Consensus 177 ~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~--~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~ 252 (289)
T PLN02608 177 T-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDP--EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFK 252 (289)
T ss_pred C-CCCCccChHHHHHHHcCCcCCccccccCHhhhcCh--hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 1 68999999999999998 787 79999999999 9999999999999999999999999999999999999997
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=3.2e-58 Score=400.36 Aligned_cols=190 Identities=49% Similarity=0.831 Sum_probs=171.7
Q ss_pred chhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCCC
Q 047796 5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGP 84 (240)
Q Consensus 5 ~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p 84 (240)
..|+++++|.++.+++++|+.||+++|++||++|||||||+||+++||+.+|||.|+|++||+|+.++...++ .+||.|
T Consensus 41 ~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p 119 (230)
T PF00141_consen 41 SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSP 119 (230)
T ss_dssp TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTT
T ss_pred ccccccccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhccccccccccccccccccccccccccc-cccccc
Confidence 5799999999655599999999999999999999999999999999999999999999999999999998777 789999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccccc
Q 047796 85 SDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANF 164 (240)
Q Consensus 85 ~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~l 164 (240)
+.++++|++.|+++||+++ |||||+||||||++||.+|. ||| + .+||.||+.|+.. .| ..++++ .+++
T Consensus 120 ~~~~~~l~~~F~~~Gls~~-e~VaLsGaHTiG~~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~ 187 (230)
T PF00141_consen 120 TDSVDQLLAFFARKGLSAE-EMVALSGAHTIGRAHCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPL 187 (230)
T ss_dssp TSHHHHHHHHHHHTT--HH-HHHHHHGGGGSTEESGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEES
T ss_pred ccccchhhhhhhccccchh-hhcceecccccccceecccc-ccc-c----cccccccccccee---cc-CCCccc-cccc
Confidence 9999999999999999999 99999999999999999999 999 5 5699999999988 99 433333 7788
Q ss_pred CCCCCCccChHHHHHhhhcccccccccccccCCccchHHHHHHhhhC
Q 047796 165 DVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRN 211 (240)
Q Consensus 165 d~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~~v~~yA~~ 211 (240)
| ||.+|||+||++|++++|+|.||++|+.|+ +|+++|++||+|
T Consensus 188 d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~--~t~~~V~~yA~d 230 (230)
T PF00141_consen 188 D--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP--ETRPIVERYAQD 230 (230)
T ss_dssp S--STTS-SSHHHHHHHHTEEEEHHHHHHHHST--THHHHHHHHHHT
T ss_pred c--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH--HHHHHHHHHhcC
Confidence 8 999999999999999999999999999999 999999999986
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.8e-56 Score=390.97 Aligned_cols=184 Identities=29% Similarity=0.476 Sum_probs=169.8
Q ss_pred chhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCCC
Q 047796 5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGP 84 (240)
Q Consensus 5 ~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p 84 (240)
.+|+++++|.++.+||++|+.||+++ | +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|
T Consensus 60 ~~E~~~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p 134 (253)
T cd00691 60 DPELNHGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDA 134 (253)
T ss_pred hhhcCCccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCC
Confidence 47999999996669999999999986 5 899999999999999999999999999999999999876677889999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccccc
Q 047796 85 SDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANF 164 (240)
Q Consensus 85 ~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~l 164 (240)
+.++++|++.|+++||+.+ |||+|+||||||++||.. ++|.|+ +
T Consensus 135 ~~~~~~l~~~F~~~Gls~~-d~VaLsGaHTiG~a~c~~-----~~~~g~-------------------------~----- 178 (253)
T cd00691 135 SKGADHLRDVFYRMGFNDQ-EIVALSGAHTLGRCHKER-----SGYDGP-------------------------W----- 178 (253)
T ss_pred CCCHHHHHHHHHhcCCCHH-HHHHhcccceeecccccC-----CCCCCC-------------------------C-----
Confidence 9999999999999999999 999999999999999953 244321 1
Q ss_pred CCCCCCccChHHHHHhhhccc--------ccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 047796 165 DVKTPDVFDNKYFSNLRLRKG--------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPL 232 (240)
Q Consensus 165 d~~tp~~FDn~Yy~~l~~~~g--------ll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~ 232 (240)
..||.+|||+||++|+.++| +|.||++|+.|+ +|+++|+.||+|++.|+++|++||+||++|+|.
T Consensus 179 -~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~--~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 179 -TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDP--KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred -CCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 15899999999999999999 999999999999 999999999999999999999999999999986
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.5e-55 Score=383.90 Aligned_cols=182 Identities=30% Similarity=0.523 Sum_probs=165.9
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCC
Q 047796 4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPG 83 (240)
Q Consensus 4 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~ 83 (240)
+..|+++++|.++..++++|+.||+++ ++|||||||+||+|+||+.+|||.|+|++||+|+.++. ++++||.
T Consensus 63 f~~E~~~~~N~gL~~~~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~ 134 (251)
T PLN02879 63 HPQELAHDANNGLDIAVRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQ 134 (251)
T ss_pred ChhhccCCCcCChHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCC
Confidence 456999999997656999999999997 48999999999999999999999999999999999875 4668999
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcccc
Q 047796 84 PSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLAN 163 (240)
Q Consensus 84 p~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 163 (240)
|+.++++|++.|+++||+++ |||||+||||||++||. | ++|.|. |
T Consensus 135 p~~~~~~l~~~F~~~Gl~~~-dlVALsGaHTiG~ah~~----r-~g~~g~-------------------------~---- 179 (251)
T PLN02879 135 ATKGVDHLRDVFGRMGLNDK-DIVALSGGHTLGRCHKE----R-SGFEGA-------------------------W---- 179 (251)
T ss_pred CCCCHHHHHHHHHHcCCCHH-HHeeeeccccccccccc----c-ccCCCC-------------------------C----
Confidence 99999999999999999999 99999999999999995 3 344331 1
Q ss_pred cCCCCCCccChHHHHHhhhc--ccc--cccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 047796 164 FDVKTPDVFDNKYFSNLRLR--KGL--LQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPL 232 (240)
Q Consensus 164 ld~~tp~~FDn~Yy~~l~~~--~gl--l~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~ 232 (240)
| .||.+|||+||++|+.+ +|+ |+||++|+.|+ +|+++|++||+||+.|+++|++||+||++||+-
T Consensus 180 -d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~--~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 180 -T-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDP--LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred -C-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCC--cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 2 58999999999999999 887 67999999999 999999999999999999999999999999974
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=7.1e-55 Score=382.42 Aligned_cols=182 Identities=31% Similarity=0.554 Sum_probs=165.0
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCC
Q 047796 4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPG 83 (240)
Q Consensus 4 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~ 83 (240)
+.+|+++++|.++.+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+.++. ++.+||.
T Consensus 62 ~~~E~~~~~N~gl~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~ 133 (250)
T PLN02364 62 FDAEQAHGANSGIHIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPD 133 (250)
T ss_pred ccccccCCCccCHHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCC
Confidence 467999999996669999999999997 48999999999999999999999999999999999876 3567999
Q ss_pred CCCCHHHHHHHHHh-cCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccc
Q 047796 84 PSDTLDVLKSSFRN-VGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLA 162 (240)
Q Consensus 84 p~~~~~~l~~~F~~-~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 162 (240)
|+.++++|++.|++ +||+.+ |||+|+||||||++|| .|+ +|.|. +
T Consensus 134 p~~~~~~l~~~F~~~~Gl~~~-d~VaLsGaHTiG~~hc----~r~-~~~g~-------------------------~--- 179 (250)
T PLN02364 134 ATKGCDHLRDVFAKQMGLSDK-DIVALSGAHTLGRCHK----DRS-GFEGA-------------------------W--- 179 (250)
T ss_pred CCcCHHHHHHHHHHhcCCCHH-HheeeecceeeccccC----CCC-CCCCC-------------------------C---
Confidence 99999999999997 599999 9999999999999999 344 44321 1
Q ss_pred ccCCCCCCccChHHHHHhhhc--ccccc--cccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 047796 163 NFDVKTPDVFDNKYFSNLRLR--KGLLQ--SDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPL 232 (240)
Q Consensus 163 ~ld~~tp~~FDn~Yy~~l~~~--~gll~--sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~ 232 (240)
+ .||.+|||+||++|+.+ +|+|. ||++|+.|+ +|+.+|+.||.|++.|+++|++||+||++|++-
T Consensus 180 --~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~--~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 180 --T-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDP--VFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred --C-CCCCccchHHHHHHhcCCcCCCccccchHHHccCc--hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 1 68999999999999999 88865 999999999 999999999999999999999999999999974
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.6e-52 Score=381.78 Aligned_cols=220 Identities=21% Similarity=0.329 Sum_probs=195.5
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhh--------
Q 047796 4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRA-------- 75 (240)
Q Consensus 4 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~-------- 75 (240)
+.+|++++.|.++.+++.+++.||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 100 f~pe~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~ 175 (409)
T cd00649 100 FAPLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKE 175 (409)
T ss_pred cccccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchh
Confidence 567999999998889999999999987 44699999999999999999999999999999999754320
Q ss_pred -----------------------------hhhcCCCCCCCCHHHHHHHHHhcCCCCCCCeEee-cccccccccccccccc
Q 047796 76 -----------------------------LANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVAL-SGAHTFGRAQCRFFRG 125 (240)
Q Consensus 76 -----------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~dlVaL-~GaHtiG~~hc~~f~~ 125 (240)
+.+..||+|..++.+|++.|.+|||+++ ||||| +||||||++||.+|.+
T Consensus 176 ~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~-E~VAL~sGAHTiGkaHc~~~~~ 254 (409)
T cd00649 176 WLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPAS 254 (409)
T ss_pred cccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHH-HHeeeccCCcceeecCcccccc
Confidence 1122799999999999999999999999 99999 5999999999999999
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHH--hhCCCC-CCCCcccccC---CCCCCccChHHHHHhhh-----------------
Q 047796 126 RLYDFNNTGKPDPTLDRTLLKQLR--ELCPQG-GNGGVLANFD---VKTPDVFDNKYFSNLRL----------------- 182 (240)
Q Consensus 126 rl~~~~g~~~~dp~~~~~~~~~L~--~~Cp~~-~~~~~~~~ld---~~tp~~FDn~Yy~~l~~----------------- 182 (240)
|| .+||.+++.|++.|+ ..||.. +.+...+.+| ..||.+|||+||++|+.
T Consensus 255 rl-------g~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~ 327 (409)
T cd00649 255 HV-------GPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVP 327 (409)
T ss_pred cC-------CCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccc
Confidence 98 259999999999996 899964 2334456788 47999999999999998
Q ss_pred -------------------cccccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 047796 183 -------------------RKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRM--GNLKPLQEIKG 237 (240)
Q Consensus 183 -------------------~~gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km--~~l~v~tg~~G 237 (240)
+.|||.||++|+.|+ +|+++|++||+|++.||++|++||+|| +.+||++.--|
T Consensus 328 ~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp--~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 328 KNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDP--EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCccccccCCCccccccccCcccchhhHhhhcCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 568999999999999 999999999999999999999999999 69999887655
No 9
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7e-51 Score=368.18 Aligned_cols=180 Identities=28% Similarity=0.419 Sum_probs=163.3
Q ss_pred hhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHh-CCCceecCCCCCCCchhhhhhhhcCCCCC
Q 047796 6 SEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALS-GGPSWAVPLGRRDSRTANRALANQKLPGP 84 (240)
Q Consensus 6 ~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~-GGP~~~v~~GR~D~~~s~~~~~~~~lP~p 84 (240)
.|+++++|. +++ ++|+.||..+|+.| |||||||+||||+||+.+ |||.|+|++||+|++++. ++++||.|
T Consensus 76 ~E~~~~~N~-gL~--~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p 146 (328)
T cd00692 76 IETAFHANI-GLD--EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEP 146 (328)
T ss_pred ccccCCCCC-CHH--HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCC
Confidence 699999998 455 99999999999998 999999999999999965 999999999999999875 45689999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCccccc
Q 047796 85 SDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANF 164 (240)
Q Consensus 85 ~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~l 164 (240)
+.++++|++.|+++||+.+ |||+|+||||||++|. .||+++ .+++
T Consensus 147 ~~sv~~l~~~F~~~Gf~~~-E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~ 191 (328)
T cd00692 147 FDSVDKILARFADAGFSPD-ELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPF 191 (328)
T ss_pred CCCHHHHHHHHHHcCCCHH-HHhhhcccccccccCC---------------CCCCCC-------------------CCCC
Confidence 9999999999999999999 9999999999999983 256554 1356
Q ss_pred CCCCCCccChHHHHHhh-hccc-------------------ccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHH
Q 047796 165 DVKTPDVFDNKYFSNLR-LRKG-------------------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMI 224 (240)
Q Consensus 165 d~~tp~~FDn~Yy~~l~-~~~g-------------------ll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~ 224 (240)
| .||.+|||+||++++ .+++ +|+||++|+.|+ +|+.+|++||.||+.|+++|+.||+
T Consensus 192 D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~--~T~~~v~~fa~dq~~f~~~Fa~Am~ 268 (328)
T cd00692 192 D-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP--RTACEWQSFVNNQAKMNAAFAAAML 268 (328)
T ss_pred C-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCC--cHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7 699999999999987 4554 499999999999 9999999999999999999999999
Q ss_pred HhhcCCCC
Q 047796 225 RMGNLKPL 232 (240)
Q Consensus 225 Km~~l~v~ 232 (240)
||++|||.
T Consensus 269 KLs~lgv~ 276 (328)
T cd00692 269 KLSLLGQD 276 (328)
T ss_pred HHHcCCCC
Confidence 99999986
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.8e-50 Score=389.86 Aligned_cols=217 Identities=23% Similarity=0.292 Sum_probs=190.9
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhh---------
Q 047796 4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANR--------- 74 (240)
Q Consensus 4 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~--------- 74 (240)
+.+|++|+.|.++.+++.+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 110 f~P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~ 185 (716)
T TIGR00198 110 FAPLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKE 185 (716)
T ss_pred cccccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccc
Confidence 56799999999888999999998886 89999999999999999999999999999999999943210
Q ss_pred ----------------h-----------hhhcCCCCCCCCHHHHHHHHHhcCCCCCCCeEeec-cccccccccccccccc
Q 047796 75 ----------------A-----------LANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALS-GAHTFGRAQCRFFRGR 126 (240)
Q Consensus 75 ----------------~-----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~dlVaL~-GaHtiG~~hc~~f~~r 126 (240)
. +...++|.|..++.+|++.|.+|||+++ |||||+ ||||||++||.+|.+|
T Consensus 186 ~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~-EmVALiaGaHTiGkaHc~s~~~r 264 (716)
T TIGR00198 186 WLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDE-ETVALIAGGHTVGKCHGAGPAEL 264 (716)
T ss_pred hhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChH-HHeeeecCceeccccCCCccccc
Confidence 0 1122699999999999999999999999 999995 9999999999999999
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHhhCCCC---CCCCcccccC---CCCCCccChHHHHHhhhc-----------------
Q 047796 127 LYDFNNTGKPDPTLDRTLLKQLRELCPQG---GNGGVLANFD---VKTPDVFDNKYFSNLRLR----------------- 183 (240)
Q Consensus 127 l~~~~g~~~~dp~~~~~~~~~L~~~Cp~~---~~~~~~~~ld---~~tp~~FDn~Yy~~l~~~----------------- 183 (240)
| ++||.+++.|++.|++.||.. +.++..+.+| ..||.+|||+||+||+.+
T Consensus 265 l-------g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~ 337 (716)
T TIGR00198 265 I-------GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAV 337 (716)
T ss_pred C-------CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeec
Confidence 8 379999999999999999853 2233356777 479999999999999975
Q ss_pred -----------------ccccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhh--cCCCCCC
Q 047796 184 -----------------KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMG--NLKPLQE 234 (240)
Q Consensus 184 -----------------~gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~--~l~v~tg 234 (240)
.++|.||++|+.|+ +++++|++||+|++.|+++|++||+||+ .+|++..
T Consensus 338 ~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp--~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 338 DAPEIIPDVEDPNKKHNPIMLDADLALRFDP--EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred ccccccccccccccccccCccchhHHhccCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 68999999999999 9999999999999999999999999999 5666543
No 11
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.5e-48 Score=341.71 Aligned_cols=185 Identities=31% Similarity=0.497 Sum_probs=168.2
Q ss_pred chhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHh--CCCceecCCCCCCCchhh--hhhhhcC
Q 047796 5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALS--GGPSWAVPLGRRDSRTAN--RALANQK 80 (240)
Q Consensus 5 ~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~ 80 (240)
.+|+++++|.++.+++++|+.||.++++ |++|||||||+||+++||+.+ |||.|+|++||+|+..+. ...+...
T Consensus 49 ~~e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~ 126 (255)
T cd00314 49 EPELDRPENGGLDKALRALEPIKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGL 126 (255)
T ss_pred cccccCcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCC
Confidence 3599999999778999999999999998 889999999999999999999 999999999999999764 2334556
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCeEeec-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCC
Q 047796 81 LPGPSDTLDVLKSSFRNVGCNDNFDLVALS-GAHTF-GRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNG 158 (240)
Q Consensus 81 lP~p~~~~~~l~~~F~~~Gl~~~~dlVaL~-GaHti-G~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~ 158 (240)
+|.|..++.++++.|.++||+++ |||||+ ||||| |++||..|..|+ |
T Consensus 127 ~p~~~~~~~~~~~~F~~~Gl~~~-e~VAL~~GaHti~G~~~~~~~~~~~------------------------~------ 175 (255)
T cd00314 127 LPNETSSATELRDKFKRMGLSPS-ELVALSAGAHTLGGKNHGDLLNYEG------------------------S------ 175 (255)
T ss_pred CCCccchHHHHHHHHHHcCCCHH-HHHhhccCCeeccCcccCCCCCccc------------------------C------
Confidence 78888889999999999999999 999999 99999 999998777654 1
Q ss_pred CcccccCCCCCCccChHHHHHhhhcc----------------cccccccccccCCccchHHHHHHhhhChHHHHHHHHHH
Q 047796 159 GVLANFDVKTPDVFDNKYFSNLRLRK----------------GLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTS 222 (240)
Q Consensus 159 ~~~~~ld~~tp~~FDn~Yy~~l~~~~----------------gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~A 222 (240)
.++..||.+|||+||++++.++ ++|.||++|+.|+ +|+.+|++||.|++.|+++|++|
T Consensus 176 ----~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~--~t~~~v~~ya~~~~~f~~~Fa~a 249 (255)
T cd00314 176 ----GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDS--ETRALVERYASDQEKFFEDFAKA 249 (255)
T ss_pred ----CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCH--hHHHHHHHHHhCHHHHHHHHHHH
Confidence 1244799999999999999988 8999999999999 99999999999999999999999
Q ss_pred HHHhhc
Q 047796 223 MIRMGN 228 (240)
Q Consensus 223 m~Km~~ 228 (240)
|+||++
T Consensus 250 ~~Km~~ 255 (255)
T cd00314 250 WIKMVN 255 (255)
T ss_pred HHHHcC
Confidence 999975
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-46 Score=362.93 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=192.3
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhh--------
Q 047796 4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRA-------- 75 (240)
Q Consensus 4 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~-------- 75 (240)
+.+|.+++.|.++.+++.+++.||+++ |..||+||+|+||+..|||.+|||.|++.+||.|.......
T Consensus 112 f~pe~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~ 187 (726)
T PRK15061 112 FAPLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKE 187 (726)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccc
Confidence 567999999999889999999999997 45799999999999999999999999999999998654321
Q ss_pred ------------------------------hhhcCCCCCCCCHHHHHHHHHhcCCCCCCCeEeec-cccccccccccccc
Q 047796 76 ------------------------------LANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALS-GAHTFGRAQCRFFR 124 (240)
Q Consensus 76 ------------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~dlVaL~-GaHtiG~~hc~~f~ 124 (240)
+.+..+|+|..++.+|++.|.+|||+++ |||||+ ||||||++||..|.
T Consensus 188 ~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDe-EtVALiaGgHT~GkaHca~~~ 266 (726)
T PRK15061 188 WLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGDA 266 (726)
T ss_pred ccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHH-HheeeccCCceeeeCCCcCcc
Confidence 0122479999999999999999999999 999995 99999999999999
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHH--hhCCCC-CCCCcccccC---CCCCCccChHHHHHhhhc---------------
Q 047796 125 GRLYDFNNTGKPDPTLDRTLLKQLR--ELCPQG-GNGGVLANFD---VKTPDVFDNKYFSNLRLR--------------- 183 (240)
Q Consensus 125 ~rl~~~~g~~~~dp~~~~~~~~~L~--~~Cp~~-~~~~~~~~ld---~~tp~~FDn~Yy~~l~~~--------------- 183 (240)
+|| ++||.+++.|++.|. ..||.. +.++....+| ..||.+|||+||++|+.+
T Consensus 267 ~rl-------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~ 339 (726)
T PRK15061 267 SHV-------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWV 339 (726)
T ss_pred ccc-------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCcccccc
Confidence 998 369999999999985 899963 3334456788 579999999999999985
Q ss_pred ---------------------ccccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 047796 184 ---------------------KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGN--LKPLQEIKG 237 (240)
Q Consensus 184 ---------------------~gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~--l~v~tg~~G 237 (240)
.+||.||++|+.|+ +++++|++||+|+++|+++|++||.||++ +|+++.--|
T Consensus 340 ~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP--~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 340 PKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDP--EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccCccccccCCcccccccccCcccccccHHhhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 58999999999999 99999999999999999999999999954 777654433
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.4e-38 Score=277.63 Aligned_cols=168 Identities=26% Similarity=0.357 Sum_probs=138.7
Q ss_pred chhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCCCCCCHHHHHHHH
Q 047796 16 SARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSF 95 (240)
Q Consensus 16 ~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 95 (240)
.+++|+.|+.+ +|||||||+||+|+||+.||||.|+|++||+|++++.. . .||.|+.++++|++.|
T Consensus 86 ~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~~F 151 (264)
T cd08201 86 TLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTESF 151 (264)
T ss_pred ccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHHHH
Confidence 56677766443 59999999999999999999999999999999998763 2 4999999999999999
Q ss_pred HhcCCCCCCCeEeecc-ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcccccCCCCCCccCh
Q 047796 96 RNVGCNDNFDLVALSG-AHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDN 174 (240)
Q Consensus 96 ~~~Gl~~~~dlVaL~G-aHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDn 174 (240)
+++||+++ |||+|+| |||||++||..|.+++- |.. ..+...++| .||.+|||
T Consensus 152 a~~Gfs~~-DmVaLsggaHTiG~ahc~~f~~~~~---------~g~----------------~~~~~~p~d-stp~~FDn 204 (264)
T cd08201 152 RRQGFSTS-EMIALVACGHTLGGVHSEDFPEIVP---------PGS----------------VPDTVLQFF-DTTIQFDN 204 (264)
T ss_pred HHcCCChH-HHheeecCCeeeeecccccchhhcC---------Ccc----------------ccCCCCCCC-CCccccch
Confidence 99999999 9999995 99999999998877651 100 001133566 69999999
Q ss_pred HHHHHhhhccc----------ccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhc
Q 047796 175 KYFSNLRLRKG----------LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGN 228 (240)
Q Consensus 175 ~Yy~~l~~~~g----------ll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~ 228 (240)
+||.+++.+.. .+.||..++..++ ...++.+| ++..|.+.++..++||++
T Consensus 205 ~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~---n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 205 KVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDG---NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHHHHhcCCCCCceeecCCCCccchhhheecCc---cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 99999998742 3689999997763 33466777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=4.5e-35 Score=259.87 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=151.2
Q ss_pred cchhhccCCCCC--chhhHHHHHHHHHHHHhh-CCC-CcCHHHHHHHHHHHHHHHhCC-----CceecCCCCCCCchhhh
Q 047796 4 IDSEKFAAPNNN--SARGFEVIDNMKAAVEKA-CPR-VVSCADILTIAAERSVALSGG-----PSWAVPLGRRDSRTANR 74 (240)
Q Consensus 4 ~~~E~~~~~N~~--~~~g~~~i~~iK~~le~~-cp~-~VScADilalAa~~Av~~~GG-----P~~~v~~GR~D~~~s~~ 74 (240)
+.+|++|+.|.+ +.+.+.+++.||+++... -++ .||+||+|+||+..|||.+|| |.+++.+||.|......
T Consensus 60 l~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~t 139 (297)
T cd08200 60 LAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQT 139 (297)
T ss_pred CccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCC
Confidence 467999999998 778999999999998421 122 699999999999999999999 99999999999987542
Q ss_pred hhh--hcCCCCCC------------CCHHHHHHHHHhcCCCCCCCeEeecccc-ccccccccccccccccCCCCCCCCCC
Q 047796 75 ALA--NQKLPGPS------------DTLDVLKSSFRNVGCNDNFDLVALSGAH-TFGRAQCRFFRGRLYDFNNTGKPDPT 139 (240)
Q Consensus 75 ~~~--~~~lP~p~------------~~~~~l~~~F~~~Gl~~~~dlVaL~GaH-tiG~~hc~~f~~rl~~~~g~~~~dp~ 139 (240)
... ...+|.+. ...++|++.|.++||+++ |||||+||| ++|+.|..+ +.|
T Consensus 140 d~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~-EmvaL~Gg~r~lG~~~~~s-------~~G------- 204 (297)
T cd08200 140 DVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGS-------KHG------- 204 (297)
T ss_pred CcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChH-HHhheecchhhcccCCCCC-------CCC-------
Confidence 111 11345332 134789999999999999 999999997 799988643 112
Q ss_pred CCHHHHHHHHhhCCCCCCCCcccccCCCCCCccChHHHHHhhhc----------------------c---cccccccccc
Q 047796 140 LDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR----------------------K---GLLQSDQELF 194 (240)
Q Consensus 140 ~~~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDn~Yy~~l~~~----------------------~---gll~sD~~L~ 194 (240)
.|+ .+|.+|||.||++|+.. . .++.+|..|.
T Consensus 205 ------------------~wT------~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~ 260 (297)
T cd08200 205 ------------------VFT------DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFG 260 (297)
T ss_pred ------------------CCc------CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhc
Confidence 232 57899999999999951 0 1267899999
Q ss_pred cCCccchHHHHHHhhhC--hHHHHHHHHHHHHHhhcCC
Q 047796 195 STPGADTAAIVEDFGRN--QNAFFKNFVTSMIRMGNLK 230 (240)
Q Consensus 195 ~d~~~~t~~~v~~yA~~--~~~F~~~Fa~Am~Km~~l~ 230 (240)
.|+ +.|++|+.||+| ++.|++||++||+||.++.
T Consensus 261 sd~--~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 261 SNS--ELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred cCH--HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 999 999999999999 9999999999999999874
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.96 E-value=6.8e-30 Score=247.71 Aligned_cols=186 Identities=19% Similarity=0.249 Sum_probs=151.7
Q ss_pred cchhhccCCCC--CchhhHHHHHHHHHHHHhhC-C-CCcCHHHHHHHHHHHHHHHh---CC--CceecCCCCCCCchhhh
Q 047796 4 IDSEKFAAPNN--NSARGFEVIDNMKAAVEKAC-P-RVVSCADILTIAAERSVALS---GG--PSWAVPLGRRDSRTANR 74 (240)
Q Consensus 4 ~~~E~~~~~N~--~~~~g~~~i~~iK~~le~~c-p-~~VScADilalAa~~Av~~~---GG--P~~~v~~GR~D~~~s~~ 74 (240)
+.+|++++.|. ++.+.+.+++.||++....- . ..||.||+|+||+..|||.+ || |.+++.+||.|+.....
T Consensus 485 l~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t 564 (726)
T PRK15061 485 LAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT 564 (726)
T ss_pred cccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC
Confidence 45799999999 77899999999999986432 1 26999999999999999999 68 99999999999987542
Q ss_pred hhhh---cCCCCCC------------CCHHHHHHHHHhcCCCCCCCeEeecccc-ccccccccccccccccCCCCCCCCC
Q 047796 75 ALAN---QKLPGPS------------DTLDVLKSSFRNVGCNDNFDLVALSGAH-TFGRAQCRFFRGRLYDFNNTGKPDP 138 (240)
Q Consensus 75 ~~~~---~~lP~p~------------~~~~~l~~~F~~~Gl~~~~dlVaL~GaH-tiG~~hc~~f~~rl~~~~g~~~~dp 138 (240)
+++ ..+|... .....|++.|.++||++. |||||+||| ++|+.|..++ .|
T Consensus 565 -d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~-EmvaL~Gg~r~Lg~~~~~S~-------~G------ 629 (726)
T PRK15061 565 -DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGSK-------HG------ 629 (726)
T ss_pred -CcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChH-HHhheecchhhcccCCCCCC-------CC------
Confidence 222 2456532 124889999999999999 999999997 7898885431 12
Q ss_pred CCCHHHHHHHHhhCCCCCCCCcccccCCCCCCccChHHHHHhhhcc-----------------------cc--ccccccc
Q 047796 139 TLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRK-----------------------GL--LQSDQEL 193 (240)
Q Consensus 139 ~~~~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDn~Yy~~l~~~~-----------------------gl--l~sD~~L 193 (240)
.++ .+|.+|||.||+||+.-. .+ +.+|..|
T Consensus 630 -------------------~~T------~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvf 684 (726)
T PRK15061 630 -------------------VFT------DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVF 684 (726)
T ss_pred -------------------CCc------CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheec
Confidence 222 478999999999999510 12 4789999
Q ss_pred ccCCccchHHHHHHhhhC--hHHHHHHHHHHHHHhhcCCC
Q 047796 194 FSTPGADTAAIVEDFGRN--QNAFFKNFVTSMIRMGNLKP 231 (240)
Q Consensus 194 ~~d~~~~t~~~v~~yA~~--~~~F~~~Fa~Am~Km~~l~v 231 (240)
..|+ +.|++|+.||+| ++.|++||++||.|+.+++-
T Consensus 685 gsds--~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 685 GSNS--QLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred ccCH--HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 9999 999999999999 99999999999999999973
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.96 E-value=4.4e-30 Score=250.12 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=148.3
Q ss_pred cchhhccCCC--CCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHh---CCC--ceecCCCCCCCchhhhhh
Q 047796 4 IDSEKFAAPN--NNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALS---GGP--SWAVPLGRRDSRTANRAL 76 (240)
Q Consensus 4 ~~~E~~~~~N--~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~---GGP--~~~v~~GR~D~~~s~~~~ 76 (240)
+.+|++++.| .++.+.+.+++.||+++.. ..||.||+|+||+..|||.+ ||| .+++.+||.|+..... +
T Consensus 478 l~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d 553 (716)
T TIGR00198 478 LEPQKNWPVNEPTRLAKVLAVLEKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-D 553 (716)
T ss_pred cchhcCcccCCHHHHHHHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-C
Confidence 4579999999 7778999999999998742 26999999999999999999 897 5788999999987642 2
Q ss_pred hhcCCC---CC------------CCCHHHHHHHHHhcCCCCCCCeEeeccc-cccccccccccccccccCCCCCCCCCCC
Q 047796 77 ANQKLP---GP------------SDTLDVLKSSFRNVGCNDNFDLVALSGA-HTFGRAQCRFFRGRLYDFNNTGKPDPTL 140 (240)
Q Consensus 77 ~~~~lP---~p------------~~~~~~l~~~F~~~Gl~~~~dlVaL~Ga-HtiG~~hc~~f~~rl~~~~g~~~~dp~~ 140 (240)
++...| .+ ......|++.|.++||++. |||||+|| |++|++|..+ +.|
T Consensus 554 ~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~-EmvaL~Gg~r~lG~~~~~s-------~~G-------- 617 (716)
T TIGR00198 554 AESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAP-EMTVLIGGMRVLGANHGGS-------KHG-------- 617 (716)
T ss_pred ccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChH-HHHheecchhhccccCCCC-------CCC--------
Confidence 222222 11 1235678899999999999 99999998 5999998643 112
Q ss_pred CHHHHHHHHhhCCCCCCCCcccccCCCCCCccChHHHHHhhhcc-----------------------ccc--cccccccc
Q 047796 141 DRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRK-----------------------GLL--QSDQELFS 195 (240)
Q Consensus 141 ~~~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDn~Yy~~l~~~~-----------------------gll--~sD~~L~~ 195 (240)
.++ .+|.+|||.||++|+... .++ .+|..|..
T Consensus 618 -----------------~~T------~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~s 674 (716)
T TIGR00198 618 -----------------VFT------DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGS 674 (716)
T ss_pred -----------------CCc------CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeecc
Confidence 222 578999999999998621 122 67999999
Q ss_pred CCccchHHHHHHhhhCh--HHHHHHHHHHHHHhhcCCC
Q 047796 196 TPGADTAAIVEDFGRNQ--NAFFKNFVTSMIRMGNLKP 231 (240)
Q Consensus 196 d~~~~t~~~v~~yA~~~--~~F~~~Fa~Am~Km~~l~v 231 (240)
|+ +.|++|+.||+|+ +.|++||++||.|+.+++-
T Consensus 675 d~--~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 675 NS--ILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred CH--HHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 99 9999999999997 8999999999999999984
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-29 Score=236.69 Aligned_cols=213 Identities=20% Similarity=0.299 Sum_probs=174.2
Q ss_pred cchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhh--------
Q 047796 4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRA-------- 75 (240)
Q Consensus 4 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~-------- 75 (240)
|.++.+||.|.++.+++.+++.||+++ +..||+||+|+||+..|++.+|++.+.+..||.|-..+...
T Consensus 125 FaPlnSWPDN~nLDKarRLLWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~ 200 (730)
T COG0376 125 FAPLNSWPDNANLDKARRLLWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKT 200 (730)
T ss_pred cccccCCCcccchHHHHHHhhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccc
Confidence 567889999999999999999999997 66899999999999999999999999999999998877641
Q ss_pred -----------------------------hhhcCCCCCCCCHHHHHHHHHhcCCCCCCCeEeec-ccccccccccccccc
Q 047796 76 -----------------------------LANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALS-GAHTFGRAQCRFFRG 125 (240)
Q Consensus 76 -----------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~dlVaL~-GaHtiG~~hc~~f~~ 125 (240)
+.+...|+|..+..+++..|++|+++++ |.|||+ ||||+|++|...-.+
T Consensus 201 wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDe-ETVALiaGGHtfGKtHGag~a~ 279 (730)
T COG0376 201 WLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPAS 279 (730)
T ss_pred ccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcH-hhhhhhhcccccccccCCCchh
Confidence 2234578999999999999999999999 999996 699999999865332
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHh--hCCC-CCCCCcccccC---CCCCCccChHHHHHhhhcc---------------
Q 047796 126 RLYDFNNTGKPDPTLDRTLLKQLRE--LCPQ-GGNGGVLANFD---VKTPDVFDNKYFSNLRLRK--------------- 184 (240)
Q Consensus 126 rl~~~~g~~~~dp~~~~~~~~~L~~--~Cp~-~~~~~~~~~ld---~~tp~~FDn~Yy~~l~~~~--------------- 184 (240)
-+ +++|.-.+--.+.|-+ .|-. .+.+.....+. ..+|++|||.||.+|+...
T Consensus 280 ~v-------g~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~ 352 (730)
T COG0376 280 NV-------GPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDA 352 (730)
T ss_pred hc-------CCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccc
Confidence 22 4567655555555543 3322 12222222232 2689999999999999642
Q ss_pred --------------------cccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCC
Q 047796 185 --------------------GLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLK 230 (240)
Q Consensus 185 --------------------gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~ 230 (240)
+||.+|.+|..|| ..+.|.++|.+||+.|.+.|++||.||.+-.
T Consensus 353 k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP--~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 353 KSAAAETIPDAHDPSKKHGPMMLTTDLALRFDP--EYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred cCccccCCCCCCCcccccCceeeccchhhhcCh--HHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 5899999999999 9999999999999999999999999998643
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.40 E-value=2.3e-12 Score=121.56 Aligned_cols=181 Identities=22% Similarity=0.289 Sum_probs=127.3
Q ss_pred chhhccCCCCC--chhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHh---CCCc--eecCCCCCCCchhhhhhh
Q 047796 5 DSEKFAAPNNN--SARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALS---GGPS--WAVPLGRRDSRTANRALA 77 (240)
Q Consensus 5 ~~E~~~~~N~~--~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~---GGP~--~~v~~GR~D~~~s~~~~~ 77 (240)
.+.++|..|.. +.+.+.+++.|++...+ .||.||+|+|++..||+.+ .|-. +++.+||.|+........
T Consensus 496 aPqkdWevN~P~~l~kvl~~le~iq~~fnk----kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~ 571 (730)
T COG0376 496 APQKDWEVNQPAELAKVLAVLEKIQKEFNK----KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVE 571 (730)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcC----ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchh
Confidence 35788999974 34788999999988863 6999999999999999986 6644 566799999977653211
Q ss_pred hcCCCCC--------------CCCHHHHHHHHHhcCCCCCCCeEeecccc-ccccccccccccccccCCCCCCCCCCCCH
Q 047796 78 NQKLPGP--------------SDTLDVLKSSFRNVGCNDNFDLVALSGAH-TFGRAQCRFFRGRLYDFNNTGKPDPTLDR 142 (240)
Q Consensus 78 ~~~lP~p--------------~~~~~~l~~~F~~~Gl~~~~dlVaL~GaH-tiG~~hc~~f~~rl~~~~g~~~~dp~~~~ 142 (240)
...+=.| ...-.-|++.-...+|+.. ||++|.||- .+|.-+. |
T Consensus 572 sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Ltap-emtVLiGGlRvLg~n~g-----------~---------- 629 (730)
T COG0376 572 SFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAP-EMTVLIGGLRVLGANYG-----------G---------- 629 (730)
T ss_pred hhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCc-cceEEEcceEeeccCCC-----------C----------
Confidence 1111111 1124556788888999999 999999874 4443221 1
Q ss_pred HHHHHHHhhCCCCCCCCcccccCCCCCCccChHHHHHhhhc-------------------c-cc-----cccccccccCC
Q 047796 143 TLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR-------------------K-GL-----LQSDQELFSTP 197 (240)
Q Consensus 143 ~~~~~L~~~Cp~~~~~~~~~~ld~~tp~~FDn~Yy~~l~~~-------------------~-gl-----l~sD~~L~~d~ 197 (240)
....|.-| .|..+.|.||.||+.- + |- -..|..+-.++
T Consensus 630 ---------------s~~GVfT~--~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns 692 (730)
T COG0376 630 ---------------SKHGVFTD--RPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNS 692 (730)
T ss_pred ---------------Cccceecc--CcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcH
Confidence 11222222 5667777777777752 1 21 23566666677
Q ss_pred ccchHHHHHHhhhC--hHHHHHHHHHHHHHhhcCC
Q 047796 198 GADTAAIVEDFGRN--QNAFFKNFVTSMIRMGNLK 230 (240)
Q Consensus 198 ~~~t~~~v~~yA~~--~~~F~~~Fa~Am~Km~~l~ 230 (240)
..|.+.+.||++ ++.|.+||+.||.|..++.
T Consensus 693 --~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 693 --ELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred --HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 899999999985 8999999999999998875
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=65.00 E-value=6 Score=29.02 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 047796 214 AFFKNFVTSMIRMGNLKPL 232 (240)
Q Consensus 214 ~F~~~Fa~Am~Km~~l~v~ 232 (240)
.....|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999963
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=50.60 E-value=1.5e+02 Score=27.98 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHH--HHhCCCceecCCCCCCCchhhhhhhhcCCCCCC----CCHHHHHHHHHhcCCCCC
Q 047796 38 VSCADILTIAAERSV--ALSGGPSWAVPLGRRDSRTANRALANQKLPGPS----DTLDVLKSSFRNVGCNDN 103 (240)
Q Consensus 38 VScADilalAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~~ 103 (240)
|.|-=-+.+....|+ ..+|-.++..+.||.|-+.-.... ...+|... ..+.++...|++.|+..+
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 444433444443333 235888999999998775432111 11244332 247888888989998765
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=47.53 E-value=1.3e+02 Score=27.88 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=29.6
Q ss_pred hCCCceecCCCCCCCchhhhhhhhcCCCCC---CCCHHHHHHHHHhcCCCCC
Q 047796 55 SGGPSWAVPLGRRDSRTANRALANQKLPGP---SDTLDVLKSSFRNVGCNDN 103 (240)
Q Consensus 55 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~~ 103 (240)
+|-.++..+.||.+-+.-.........+.. -..+.++.+.|++.|+..+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 488889999999865432111111111111 2357788888989998765
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=34.24 E-value=3.5e+02 Score=24.91 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=69.4
Q ss_pred HHHHhCCCceecCCCCCCCchhhhhhhhcCCC----CCCCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccc
Q 047796 51 SVALSGGPSWAVPLGRRDSRTANRALANQKLP----GPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGR 126 (240)
Q Consensus 51 Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~r 126 (240)
+...+|..++..+.||.|-+.-...... ..+ ++-..+.++.+.|++.|+..+ =|.| .=.+.+.+..
T Consensus 164 aaa~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i~~~~k~~g~~T~-Im~A--SfRn~~qv~~------ 233 (317)
T TIGR00874 164 ACAEAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKIYNYYKKHGYPTE-VMGA--SFRNKEEILA------ 233 (317)
T ss_pred HHHHcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHHHHHHHHcCCCcE-EEee--ccCCHHHHHH------
Confidence 3344588999999999876432211000 111 123457888889999999866 3322 0011121111
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHhhCCCCC---CCCcccccCCCCCCccChHHHHHhhhcccccccccccccCCccchHH
Q 047796 127 LYDFNNTGKPDPTLDRTLLKQLRELCPQGG---NGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAA 203 (240)
Q Consensus 127 l~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~---~~~~~~~ld~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~ 203 (240)
+ .|. .--+++|.....|...-.... ........+ ..|..+|...|+..++..+| .. . ....
T Consensus 234 l---aG~--d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~-e--kl~~ 297 (317)
T TIGR00874 234 L---AGC--DRLTISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------AT-E--KLAE 297 (317)
T ss_pred H---HCC--CeEeCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc-------hH-H--HHHH
Confidence 1 111 012677888887765322110 001000111 23456788888754433221 11 1 2344
Q ss_pred HHHHhhhChHHHHHH
Q 047796 204 IVEDFGRNQNAFFKN 218 (240)
Q Consensus 204 ~v~~yA~~~~~F~~~ 218 (240)
-++.|+.|+.....-
T Consensus 298 gir~F~~d~~~Le~~ 312 (317)
T TIGR00874 298 GIRKFAADQEKLEKL 312 (317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777776665543
No 23
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=30.43 E-value=70 Score=22.49 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=16.7
Q ss_pred CCCCcCHHHHHHHHHHHHHHHhC
Q 047796 34 CPRVVSCADILTIAAERSVALSG 56 (240)
Q Consensus 34 cp~~VScADilalAa~~Av~~~G 56 (240)
++..+|.|||..+..-.-+...+
T Consensus 51 ~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 51 VGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp SBSS-CHHHHHHHHHHHHHHHHT
T ss_pred eccCCchhHHHHHHHHHHHHHhC
Confidence 45789999999998877666543
No 24
>PLN02161 beta-amylase
Probab=28.69 E-value=89 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHhhhChHHHHHHHHHHHHHhh-----cCCCCCCCCCccC
Q 047796 204 IVEDFGRNQNAFFKNFVTSMIRMG-----NLKPLQEIKGRLD 240 (240)
Q Consensus 204 ~v~~yA~~~~~F~~~Fa~Am~Km~-----~l~v~tg~~GeiR 240 (240)
-++.|. .|...|...|.-+. +|.|=-|..||+|
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELR 271 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELR 271 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCcccc
Confidence 456774 46666666666653 5555668999998
No 25
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=27.99 E-value=26 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=20.6
Q ss_pred HHHHHH---HHHHHHhCCCceecCCCCCCCch
Q 047796 43 ILTIAA---ERSVALSGGPSWAVPLGRRDSRT 71 (240)
Q Consensus 43 ilalAa---~~Av~~~GGP~~~v~~GR~D~~~ 71 (240)
+|+||+ .|-+..|.||.+++-.||---..
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptp 40 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTP 40 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCCh
Confidence 455555 35567789999999999954433
No 26
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=22.85 E-value=2.1e+02 Score=26.31 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=33.6
Q ss_pred CCCCCCCCHHHHHHHHH--hcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCC
Q 047796 80 KLPGPSDTLDVLKSSFR--NVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQ 154 (240)
Q Consensus 80 ~lP~p~~~~~~l~~~F~--~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~ 154 (240)
+.|.|.-+.+++.++-. ++-+... |+|+|+|.- .|.+.++|...|-+.|..
T Consensus 105 n~~Gp~is~~~~~~~l~~~~~~l~~~-d~VvlsGSl-----------------------P~g~~~d~y~~li~~~~~ 157 (310)
T COG1105 105 NFPGPEISEAELEQFLEQLKALLESD-DIVVLSGSL-----------------------PPGVPPDAYAELIRILRQ 157 (310)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcccC-CEEEEeCCC-----------------------CCCCCHHHHHHHHHHHHh
Confidence 57888777665554333 2347788 999999931 355777777777666653
No 27
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=22.59 E-value=46 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=16.3
Q ss_pred hhhChHHHHHHHHHHHHHhh
Q 047796 208 FGRNQNAFFKNFVTSMIRMG 227 (240)
Q Consensus 208 yA~~~~~F~~~Fa~Am~Km~ 227 (240)
|-..|+.||+.|+..+.|=+
T Consensus 38 Y~~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKRG 57 (90)
T ss_pred CChHHHHHHHHHhhhhhHHH
Confidence 66679999999999887743
No 28
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=20.10 E-value=37 Score=27.08 Aligned_cols=13 Identities=15% Similarity=0.583 Sum_probs=9.3
Q ss_pred Eeecccccccccc
Q 047796 107 VALSGAHTFGRAQ 119 (240)
Q Consensus 107 VaL~GaHtiG~~h 119 (240)
|+|+|+|+.|++-
T Consensus 2 I~i~G~~stGKTT 14 (163)
T PF13521_consen 2 IVITGGPSTGKTT 14 (163)
T ss_dssp EEEE--TTSHHHH
T ss_pred EEEECCCCCCHHH
Confidence 7899999999865
Done!