BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047797
(927 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 207/675 (30%), Positives = 300/675 (44%), Gaps = 125/675 (18%)
Query: 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF--FGNMCSLNQLYLPRNKLSGQLSELI 335
H+ GS+ F+ SL L L+ N L G + G+ L L + N L +
Sbjct: 88 HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFP 141
Query: 336 QNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS-----LKVLKLGENHLNGTINKSLSH 390
+S G +NSLE L L AN I+G +G LS LK L + N ++G ++ +S
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198
Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT------------LKL----S 434
LE L + N+F+ I F + S LQ L ++ N L+ LKL S
Sbjct: 199 CVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 435 HDWV------PAFQLKWLSLASCKMGPHFPNWLQTQ-NQLISLDISNIGISDTIPDWF-- 485
+ +V P L++LSLA K P++L + L LD+S +P +F
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 486 ---------------WDLSIE-------LFFLNLSNNHISGKLPD-LSVLKSDDIVIDIS 522
+L ++ L L+LS N SG+LP+ L+ L + + +D+S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 523 SNNFDGPIPP----LPSNS-TFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPD 576
SNNF GPI P P N+ L L N F+G +P N + L L+L+ N SG IP
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 577 SMG------------------------FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612
S+G ++ ++TL L N L GE+PS L NC+ L +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
L N L GE+P + G L+NL IL+L +N+F GNIP +L + LDL+ N +G IP
Sbjct: 497 LSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTL---- 728
S I ++N I G + G N LL ++G E + L
Sbjct: 556 AAMFKQSGKI---AANFIAGKRYVYIKNDGMKKECHGAGN-LLEFQGIRSEQLNRLSTRN 611
Query: 729 --------------------GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768
G + +LD+S N L IP+EI + L LNL N+++G
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 769 IPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNA 828
IP ++G L+ L+ LDLS N G IP N+LSG IP Q ++F
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 829 SVYAGNLELCGLPLP 843
+ + N LCG PLP
Sbjct: 732 AKFLNNPGLCGYPLP 746
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 159/365 (43%), Gaps = 60/365 (16%)
Query: 236 LFNLSTSIETLDLSDNH-----LP--------------------SSSVYPWLFNLSRNIL 270
L NLS S+ TLDLS N+ LP + + P L N S ++
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LV 421
Query: 271 HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQ 330
L L FN+L G+IP + + LR L L N LEG IP+ + +L L L N L+G+
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 331 LSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLS 389
+ + N CT +L + L N +TG IP +GR +L +LKL N +G I L
Sbjct: 482 IPSGLSN----CT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA-------DNSLTLKLSH------- 435
L L L+ N F G I F + F+A N K H
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 436 -DWVPAFQLKWLS------LASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
+ + QL LS + S G H ++ LD+S +S IP +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 489 SIELFFLNLSNNHISGKLPD-LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL---NLSK 544
LF LNL +N ISG +PD + L+ +I +D+SSN DG IP S T L +LS
Sbjct: 656 PY-LFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 545 NKFSG 549
N SG
Sbjct: 714 NNLSG 718
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 207/675 (30%), Positives = 300/675 (44%), Gaps = 125/675 (18%)
Query: 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF--FGNMCSLNQLYLPRNKLSGQLSELI 335
H+ GS+ F+ SL L L+ N L G + G+ L L + N L +
Sbjct: 85 HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFP 138
Query: 336 QNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS-----LKVLKLGENHLNGTINKSLSH 390
+S G +NSLE L L AN I+G +G LS LK L + N ++G ++ +S
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 195
Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT------------LKL----S 434
LE L + N+F+ I F + S LQ L ++ N L+ LKL S
Sbjct: 196 CVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 435 HDWV------PAFQLKWLSLASCKMGPHFPNWLQTQ-NQLISLDISNIGISDTIPDWF-- 485
+ +V P L++LSLA K P++L + L LD+S +P +F
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 486 ---------------WDLSIE-------LFFLNLSNNHISGKLPD-LSVLKSDDIVIDIS 522
+L ++ L L+LS N SG+LP+ L+ L + + +D+S
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 523 SNNFDGPIPP----LPSNS-TFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPD 576
SNNF GPI P P N+ L L N F+G +P N + L L+L+ N SG IP
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 577 SMG------------------------FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612
S+G ++ ++TL L N L GE+PS L NC+ L +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
L N L GE+P + G L+NL IL+L +N+F GNIP +L + LDL+ N +G IP
Sbjct: 494 LSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTL---- 728
S I ++N I G + G N LL ++G E + L
Sbjct: 553 AAMFKQSGKI---AANFIAGKRYVYIKNDGMKKECHGAGN-LLEFQGIRSEQLNRLSTRN 608
Query: 729 --------------------GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768
G + +LD+S N L IP+EI + L LNL N+++G
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 769 IPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNA 828
IP ++G L+ L+ LDLS N G IP N+LSG IP Q ++F
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 829 SVYAGNLELCGLPLP 843
+ + N LCG PLP
Sbjct: 729 AKFLNNPGLCGYPLP 743
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 159/365 (43%), Gaps = 60/365 (16%)
Query: 236 LFNLSTSIETLDLSDNH-----LP--------------------SSSVYPWLFNLSRNIL 270
L NLS S+ TLDLS N+ LP + + P L N S ++
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LV 418
Query: 271 HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQ 330
L L FN+L G+IP + + LR L L N LEG IP+ + +L L L N L+G+
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 331 LSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLS 389
+ + N CT +L + L N +TG IP +GR +L +LKL N +G I L
Sbjct: 479 IPSGLSN----CT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA-------DNSLTLKLSH------- 435
L L L+ N F G I F + F+A N K H
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 436 -DWVPAFQLKWLS------LASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
+ + QL LS + S G H ++ LD+S +S IP +
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 489 SIELFFLNLSNNHISGKLPD-LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL---NLSK 544
LF LNL +N ISG +PD + L+ +I +D+SSN DG IP S T L +LS
Sbjct: 653 PY-LFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 545 NKFSG 549
N SG
Sbjct: 711 NNLSG 715
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 23/205 (11%)
Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP----LPSN 536
IP L+ +L +L +++ ++SG +PD + +D S N G +PP LP N
Sbjct: 93 IPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-N 150
Query: 537 STFLNLSKNKFSG-LPDCWLNFNSL-SILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
+ N+ SG +PD + +F+ L + + ++ NR +GKIP + L N+ + L N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 595 NGE---LPSSLKNCSKLRVLDLRKNAL---FGEVPTCVGGSLQNLIILRLKSNNFHGNIP 648
G+ L S KN K+ L KN+L G+V G +NL L L++N +G +P
Sbjct: 210 EGDASVLFGSDKNTQKIH---LAKNSLAFDLGKV-----GLSKNLNGLDLRNNRIYGTLP 261
Query: 649 FQLCHLAFIQVLDLSLNNISGKIPK 673
L L F+ L++S NN+ G+IP+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 113/277 (40%), Gaps = 16/277 (5%)
Query: 578 MGFLHNIQTLSLRNNRLN---------GELPSSLKNCSKLRVLDLRK-NALFGEVPTCVG 627
+G L + T + R N L+ +PSSL N L L + N L G +P +
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 628 GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK-S 686
L L L + N G IP L + + LD S N +SG +P S+ ++
Sbjct: 99 -KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 687 SNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746
N I G + ++ + LT K L FV DLS N L
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDAS 214
Query: 747 EEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXX 806
++L++N+L + K+G K+L+ LDL N G +P
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 807 XXXYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLP 843
+N+L G+IP G LQ F+ S YA N LCG PLP
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 118/279 (42%), Gaps = 39/279 (13%)
Query: 243 IETLDLSDNHLPSSSVYPW-LFNLSR-NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS 300
+ LDLS +LP P L NL N L++ G N+L G IP A + L L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP 360
+ G IP F + +L L N LSG L I +L +L G+ N I+G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP------NLVGITFDGNRISGA 164
Query: 361 IPD-LGRFLSL-KVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSN 418
IPD G F L + + N L G I + ++L L + L N G S F S+ N
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD-KN 222
Query: 419 LQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGIS 478
Q + LA NSL AF L + L+ L LD+ N I
Sbjct: 223 TQKIHLAKNSL----------AFDLGKVGLSK---------------NLNGLDLRNNRIY 257
Query: 479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDI 517
T+P L L LN+S N++ G++P L+ D+
Sbjct: 258 GTLPQGLTQLKF-LHSLNVSFNNLCGEIPQGGNLQRFDV 295
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 35 CIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCC--KWRGVRCSNTTGHVKVLNLQTS 92
C ++++ALL K+ L + LSSW DCC W GV C T +V NL S
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 93 DHEFARRKFLKGKISPAXXXXXXXXXXXXSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPS 152
+ + ++ N+ G P+P I L++L YL ++ S
Sbjct: 59 GLNLPKPYPIPSSLA---NLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVS 114
Query: 153 SKIP 156
IP
Sbjct: 115 GAIP 118
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL 303
E LDL L +++ F + L+L +N LQ F + L L LA+N+L
Sbjct: 38 EKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 304 EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIP 362
F ++ L++LYL N+L S + L+ L+ L L N + P
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAG 149
Query: 363 DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
+ +L+ L L N L + + L KL+T++L GN F ET +
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 20/183 (10%)
Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
N+ + LDL N L +AF + LRLL L N+L+ F + +L L++
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 324 RNKLS----GQLSELIQNLSSGCTVNSLEG--------------LCLYANDITG-PIPDL 364
NKL G +L+ N L+ L L N++ P
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFL 424
+ SLK L+L N L + L +L+TL LD N V E F ++ L+ML L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQL 212
Query: 425 ADN 427
+N
Sbjct: 213 QEN 215
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 234 IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
I +F+ ++ L L N L S+ P +F+ + +L LG+N LQ F + SL
Sbjct: 102 IGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
+ L L +N+L+ F + L L L N+L
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDS 577
+D SS +P+++ L+L NK S LP + L +L L +N+
Sbjct: 21 VDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80
Query: 578 MGFLHNIQTLSLRNNRLNGELP----SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
L N++TL + +N+L LP L N ++LR L +N L +P V SL L
Sbjct: 81 FKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELR---LDRNQL-KSLPPRVFDSLTKL 135
Query: 634 IILRLKSNNFH 644
L L N
Sbjct: 136 TYLSLGYNELQ 146
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 538 TFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPD-SMGFLHNIQTLSLRNNRLN 595
T+L+L N+ LP + SL L L NN+ ++P+ + L ++TL L NN+L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
Query: 596 GELPSSLKNCSKLRVLDLRKN 616
+ + KL++L L++N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 123/464 (26%), Positives = 196/464 (42%), Gaps = 60/464 (12%)
Query: 207 FQVVSQLHSLKTLVLRSCYL-PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNL 265
FQ + +L +L +L + L P + W + +TSI+ L L++N L ++S +
Sbjct: 191 FQTIGKLFAL---LLNNAQLNPHLTEKLCWELS-NTSIQNLSLANNQLLATSESTFSGLK 246
Query: 266 SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
N+ LDL +N+L +F ++ SLR LSL N ++ P+ F + +L L L R
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Query: 326 KLSGQLSELIQNLSSGCTVNS--------LEGLCLYANDITGPIPD-LGRFLSLKVLKLG 376
+S L+S ++ LE L + N+I + +SLK L L
Sbjct: 307 FTKQSVS-----LASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Query: 377 E-----NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTL 431
+ L SL+H L TL+L N + + + T FS + L++L L N +
Sbjct: 362 KTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGT-FSWLGQLRILDLGLNEIEQ 419
Query: 432 KLS-HDW-----VPAFQLKW-----LSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT 480
KLS +W + L + LS +S + P + + L ++DIS
Sbjct: 420 KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS------- 472
Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL 540
P F L L L+LSNN+I+ DL + ++D NN
Sbjct: 473 -PSPFRPLR-NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA------------- 517
Query: 541 NLSKNKFSGLPDCWLN-FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
L K G P +L + L ILNL +N L +++++L N LN P
Sbjct: 518 RLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEP 577
Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
+ + LR L+L+KN + G QNL L ++ N F
Sbjct: 578 FIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPF 621
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 114/297 (38%), Gaps = 57/297 (19%)
Query: 533 LPSNSTFLNLSKNKFSGLPDCWLN-----------FNSLS--------------ILNLAN 567
LPSN T LNL+ N+ LP FNS+S +LNL +
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 568 NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFG-EVPTCV 626
N S + F N+ L L +N ++ + KN L LDL N L ++ T V
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 627 --------GGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSN- 677
+ ++ LR + F GN + ++ LDLS N + P CF
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGN--------SSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 678 ---FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKY- 733
F++++ NP + + I +N LL +ST +K+
Sbjct: 195 GKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATS------ESTFSGLKWT 248
Query: 734 ----LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
LDLS N L + + L L L+L NN+ L P L +L +L L R
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 45/235 (19%)
Query: 208 QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR 267
+ S L L+ L + +L I P NL +S+ L + DN + V +F+ R
Sbjct: 96 KAFSPLRKLQKLYISKNHLVEIPP------NLPSSLVELRIHDNRI--RKVPKGVFSGLR 147
Query: 268 NILHLDLGFNHLQ--GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
N+ +++G N L+ G P AF + L L ++ +L G IPK +LN+L+L N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHN 203
Query: 326 KLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTIN 385
K + ++E + DL R+ L L LG N + N
Sbjct: 204 K-----------------IQAIE------------LEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 386 KSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA 440
SLS L L L LD N + V + ++ LQ+++L N++T +D+ P
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPV 287
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL 303
E LDL L +++ F + L+L +N LQ F + L L LA+N+L
Sbjct: 38 EKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 304 EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIP 362
F ++ L++LYL N+L S + L+ L+ L L N + P
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAG 149
Query: 363 DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
+ +L+ L L N L + + L KL+T++L GN F
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 234 IWLFNLSTSIETLDLSDNHLPS--SSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHM 290
+ +F+ T ++ L L N L S S V+ L L L L N LQ SIP AF +
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK----ELRLNTNQLQ-SIPAGAFDKL 154
Query: 291 VSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELI 335
+L+ LSL++N+L+ F + L + L N+ E++
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL 274
SL+ L+ +F +FN +S+E L ++ N + P +F RN+ LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDL 477
Query: 275 GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
L+ P AF + SL++L++ASN+L+ F + SL +++L N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 397 LSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSL--ASCKMG 454
LS +G SF G S++ F S L+ L L+ N + + +S +++ QL+ L ++ K
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKS 514
F +L +N LI LDIS+ ++ N I L L VLK
Sbjct: 412 SEFSVFLSLRN-LIYLDISHTHT------------------RVAFNGIFNGLSSLEVLK- 451
Query: 515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGK 573
+ + NF I N TFL+LS+ + L P + + +SL +LN+A+N+
Sbjct: 452 --MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS- 508
Query: 574 IPDSM 578
+PD +
Sbjct: 509 VPDGI 513
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 30/198 (15%)
Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
N FG+ PT SL+ L K N F L ++ LDLS N +S K
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 676 SNF---SMMIQEKSSNPIIGLANEILVVPGYIY---------------YFRYLDNVLLTW 717
S+F S+ + S N +I +++ L + + F L N++
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 718 KGSEHEYKSTLGF------VKYLDLSSNKLCEA-IPEEITDLVGLTALNLSRNNLTGLIP 770
H + G ++ L ++ N E +P+ T+L LT L+LS+ L L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 771 PKIGQLKSLDFLDLSRNH 788
L SL L+++ N
Sbjct: 488 TAFNSLSSLQVLNMASNQ 505
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
TLDLS N L S P L + LD+ FN L A + + L+ L L NEL+
Sbjct: 81 TLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
P L +L L N QL+EL L +G + +L+ L L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANN----QLTELPAGLLNG--LENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
TLDLS N L S P L + LD+ FN L A + + L+ L L NEL+
Sbjct: 81 TLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
P L +L L N QL+EL L +G + +L+ L L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANN----QLTELPAGLLNG--LENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
TLDLS N L S P L + LD+ FN L A + + L+ L L NEL+
Sbjct: 81 TLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
P L +L L N QL+EL L +G + +L+ L L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANN----QLTELPAGLLNG--LENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
TLDLS N L S P L + LD+ FN L A + + L+ L L NEL+
Sbjct: 81 TLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
P L +L L N QL+EL L +G + +L+ L L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANN----QLTELPAGLLNG--LENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDS 577
++ N P LP ++T L+LS+N + + L+ LNL + D
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73
Query: 578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637
G L + TL L +N+L LP + L VLD+ N L +P L L L
Sbjct: 74 -GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELY 130
Query: 638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF-----SMMIQEKS 686
LK N P L ++ L L+ NN++ ++P N ++++QE S
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 125/278 (44%), Gaps = 42/278 (15%)
Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
L+L+ S LP + ++L L L+ N+F S ++ LS++ N EL
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 600 SS-LKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAF-- 656
+ L+N LR LDL + + E C L+NL L+S N N P L AF
Sbjct: 343 TGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLS--HLQSLNLSYNEPLSLKTEAFKE 398
Query: 657 ---IQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLANEILV--VPGY------- 703
+++LDL+ + K + F N ++ S+ ++ +++E L +P
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 704 -------------IYYFRYLDNVLLTW----KGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746
+ L+ ++L++ +H + S L + ++DLS N+L +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHVDLSHNRLTSSSI 517
Query: 747 EEITDLVGLTALNLSRNNLTGLIP---PKIGQLKSLDF 781
E ++ L G+ LNL+ N+++ ++P P + Q ++++
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 133/335 (39%), Gaps = 61/335 (18%)
Query: 261 WLFNLSRNILH-------LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGN 313
+ FN+S N H LDL HL +P + +L+ L L++N+ E N
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASN 323
Query: 314 MCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN--SLEGLCLYANDI-TGPIPDLG-RFLS 369
SL L + N +L +GC N +L L L +DI T +L R LS
Sbjct: 324 FPSLTHLSIKGNTKRLELG-------TGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 370 -LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
L+ L L N ++ +LE L L +++ F N+ L++L L+ +
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 429 LTLKLSH--DWVPAFQLKWLSLASCKMGPHFP-------NWLQTQNQLISLDISNIGISD 479
L + D +PA Q L+L G HFP N LQT +L L +S +S
Sbjct: 437 LDISSEQLFDGLPALQ--HLNL----QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 480 TIPDWFWDL----------------SIELF------FLNLSNNHISGKLPDLSVLKSDDI 517
F L SIE +LNL++NHIS LP L + S
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR 550
Query: 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD 552
I++ N P+ SN FL K L D
Sbjct: 551 TINLRQN----PLDCTCSNIYFLEWYKENMQKLED 581
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 118/277 (42%), Gaps = 46/277 (16%)
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
+LK L L N S S+ L LS+ GN+ + N+ NL+
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR-------- 353
Query: 429 LTLKLSHDWVPA-----FQLKWLS-LASCKMGPHFPNWLQT-------QNQLISLDISNI 475
L LSHD + QL+ LS L S + + P L+T Q +L+ L + +
Sbjct: 354 -ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 476 GISDTIPDW-----FWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPI 530
+ D + L++ L++S+ + LP L L ++ N+F P
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL-------NLQGNHF--PK 463
Query: 531 PPLPSNSTFLNLSKNKFSGLPDCWLN------FNSLSILN---LANNRFSGKIPDSMGFL 581
+ ++ L + + L C L+ F SL ++N L++NR + +++ L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
I L+L +N ++ LPS L S+ R ++LR+N L
Sbjct: 524 KGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 533 LPSNSTFLNLSKNKFSGLPDC-WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
LP ++ L+L NK + + D + N +L L L NN+ S P + L ++ L L
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 592 NRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG----N 646
N+L ELP + K +LRV + +V V L +I++ L +N N
Sbjct: 110 NQLK-ELPEKMPKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 647 IPFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSM 680
FQ + L++I++ D ++ I +P + +
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 40/243 (16%)
Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
LDL N + F+++ +L L L +N++ P F + L +LYL +N QL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN----QL 112
Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-SLKVLKLGENHL------NGTI 384
EL + + +L+ L ++ N+IT + L + V++LG N L NG
Sbjct: 113 KELPEKMPK-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 385 N--KSLSHLFKLET---------------LSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
K LS++ +T L LDGN T V + + ++NL L L+ N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFN 226
Query: 428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN--QLISL---DISNIGISDTIP 482
S++ + L+ L L + K+ P L Q++ L +IS IG +D P
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 483 DWF 485
+
Sbjct: 286 PGY 288
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 533 LPSNSTFLNLSKNKFSGLPDC-WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
LP ++ L+L NK + + D + N +L L L NN+ S P + L ++ L L
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 592 NRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG----N 646
N+L ELP + K +LRV + +V V L +I++ L +N N
Sbjct: 110 NQLK-ELPEKMPKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 647 IPFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSM 680
FQ + L++I++ D ++ I +P + +
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 40/243 (16%)
Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
LDL N + F+++ +L L L +N++ P F + L +LYL +N QL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN----QL 112
Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-SLKVLKLGENHL------NGTI 384
EL + + +L+ L ++ N+IT + L + V++LG N L NG
Sbjct: 113 KELPEKMPK-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 385 N--KSLSHLFKLET---------------LSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
K LS++ +T L LDGN T V + + ++NL L L+ N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFN 226
Query: 428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN--QLISL---DISNIGISDTIP 482
S++ + L+ L L + K+ P L Q++ L +IS IG +D P
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 483 DWF 485
+
Sbjct: 286 PGY 288
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDS 577
++ N P LP ++T L+LS+N + + L+ LNL + D
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73
Query: 578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637
G L + TL L +N+L LP + L VLD+ N L +P L L L
Sbjct: 74 -GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELY 130
Query: 638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF-----SMMIQEKS 686
LK N P L ++ L L+ NN++ ++P N ++++QE S
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 66 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQ 180
Query: 640 SNNFH 644
N+ +
Sbjct: 181 ENSLY 185
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDS 577
++ N P LP ++T L+LS+N + + L+ LNL + D
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73
Query: 578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637
G L + TL L +N+L LP + L VLD+ N L +P L L L
Sbjct: 74 -GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELY 130
Query: 638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF-----SMMIQEKS 686
LK N P L ++ L L+ NN++ ++P N ++++QE S
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 520 DISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
+++ DG +P L + L+LS N+ LP +L++L+++ NR + ++
Sbjct: 67 ELTKLQVDGTLPVLGT----LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 122
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
L +Q L L+ N L P L KL L L N L E+P + L+NL L L+
Sbjct: 123 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQ 181
Query: 640 SNNFH 644
N+ +
Sbjct: 182 ENSLY 186
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDS 577
++ N P LP ++T L+LS+N + + L+ LNL + D
Sbjct: 16 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD- 74
Query: 578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637
G L + TL L +N+L LP + L VLD+ N L +P L L L
Sbjct: 75 -GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELY 131
Query: 638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF-----SMMIQEKS 686
LK N P L ++ L L+ NN++ ++P N ++++QE S
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 184
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP 575
D V+ S+ +P + T L L N+F+ +P N+ L++++L+NNR S
Sbjct: 12 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71
Query: 576 DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635
S + + TL L NRL P + LR+L L N + VP L L
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSH 130
Query: 636 LRLKSNNFHGNIPFQ 650
L + +N + + Q
Sbjct: 131 LAIGANPLYCDCNMQ 145
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 246 LDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEG 305
+DLS+N + S++ F+ +L L L +N L+ P F + SLRLLSL N++
Sbjct: 59 IDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116
Query: 306 GIPKFFGNMCSLNQLYLPRNKL 327
F ++ +L+ L + N L
Sbjct: 117 VPEGAFNDLSALSHLAIGANPL 138
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 19/238 (7%)
Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
LDLG N ++ + F L L L N + P F N+ +L L L N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--- 93
Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-SLKVLKLGENHLNGTINKSLSH 390
+ L +++L L + N I + + + L +LK L++G+N L +++ S
Sbjct: 94 ---LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
L LE L+L+ + T + +E S++ L +L L ++ + + ++LK L ++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS- 208
Query: 451 CKMGPHFPNW-LQTQNQLISLDISNIGISD----TIPDWFWDLSIELFFLNLSNNHIS 503
H+P T N L L+++++ I+ +P + L FLNLS N IS
Sbjct: 209 -----HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 542 LSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSS 601
+S FSGL NSL L L + +++ LH + L LR+ +N S
Sbjct: 143 ISHRAFSGL-------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 602 LKNCSKLRVLDLRK-NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVL 660
K +L+VL++ L P C+ G NL L + N + HL +++ L
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 661 DLSLNNIS 668
+LS N IS
Sbjct: 254 NLSYNPIS 261
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 38/264 (14%)
Query: 533 LPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
+P+ + L+L KN+ L D + +F L L L N S P + L N++TL LR+
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 592 NRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL 651
NRL S L LD+ +N ++ + Q+L LKS N +
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISEN----KIVILLDYMFQDLY--NLKSLEVGDNDLVYI 143
Query: 652 CHLAF-----IQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
H AF ++ L L N++ + S+ +I + + I + Y
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--------YS 195
Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766
F+ L Y+ +K L++S + + + LT+L+++ NLT
Sbjct: 196 FKRL-------------YR-----LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 767 GLIPPKIGQLKSLDFLDLSRNHFS 790
+ + L L FL+LS N S
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS 261
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 186/452 (41%), Gaps = 79/452 (17%)
Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ--GSIPEAFQHMVSLRLLSL 298
+ + L LS N + S + +LFN +++ +LD+ N LQ P M SLR L L
Sbjct: 76 SELRVLRLSHNRIRSLDFHVFLFN--QDLEYLDVSHNRLQNISCCP-----MASLRHLDL 128
Query: 299 ASNELEG-GIPKFFGNMCSLNQLYLPRNKLSGQLSEL-IQNLSSGCTVNSLEGLCLYAND 356
+ N+ + + K FGN+ L L L K QL L + +L C + L + +
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGE 187
Query: 357 ITG-PIPDLGRF-LSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
IP+ L L +N ++N +L HL +L + L+ + ++ TF S
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVN-ALGHL-QLSNIKLNDENCQRLM--TFLS 243
Query: 415 NMSNLQMLFLADNSLTLKLSHDW---VPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLD 471
++ L N + W V FQ W P ++ L+
Sbjct: 244 ELTRGPTLL---NVTLQHIETTWKCSVKLFQFFW------------PRPVEY------LN 282
Query: 472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL------PDLSVLKSDDI-VIDISSN 524
I N+ I++ I + S E +L H+ ++ SV +I ++ IS
Sbjct: 283 IYNLTITERIDREEFTYS-ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341
Query: 525 NFDGPI-PPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN 583
F + PP PS+ TFLN ++N F+ ++ F G L
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFT------------------DSVFQG-----CSTLKR 378
Query: 584 IQTLSLRNNRLNGELPSSL--KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
+QTL L+ N L +L KN S L LD+ N+L +++++L L SN
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 642 NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK 673
G++ F+ C ++VLDL N I IPK
Sbjct: 439 MLTGSV-FR-CLPPKVKVLDLHNNRIMS-IPK 467
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 207 FQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS 266
FQ S L L+TL+L+ L + N+S S+ETLD+S N L +S Y +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSL-NSHAYDRTCAWA 427
Query: 267 RNILHLDLGFNHLQGS---------------------IPEAFQHMVSLRLLSLASNELEG 305
+IL L+L N L GS IP+ H+ +L+ L++ASN+L+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Query: 306 GIPKFFGNMCSLNQLYLPRN 325
F + SL ++L N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDN 507
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
VK LDL +N++ +IP+++T L L LN++ N L + +L SL ++ L N +
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 791 GNIP 794
P
Sbjct: 511 CTCP 514
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 108/278 (38%), Gaps = 38/278 (13%)
Query: 535 SNSTFLNLSKNKFSGLPDCWLN-FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593
+N + + LP L+ F + +LNL + + + + H IQ L + N
Sbjct: 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104
Query: 594 LNGELPSSLKNCSKLRVLDLRKNAL-------FGEVPTCVGGSLQNLIILRLKSNNFHGN 646
+ P +N L VL L +N L F P S+ N + R++ + F
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 647 IPFQLCHLA--FIQVLDLSLNNISGKIPKCF-SNFSMMIQEKSSNPII-----GLANEIL 698
Q L+ + +DLSL IP F +N S + + PI N I
Sbjct: 165 TSLQNLQLSSNRLTHVDLSL------IPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218
Query: 699 VVPGYIYYFRYLDNVLLTWKGSEH-EYKSTLGFVKY-----LDLSSNKLCEAIPEEITDL 752
VV G + NV LT +H T + Y +DLS N+L + + +
Sbjct: 219 VVRGPV-------NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 753 VGLTALNLSRNNLTGLIPPKIGQ-LKSLDFLDLSRNHF 789
L L +S N L L GQ + +L LDLS NH
Sbjct: 272 QRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 307
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
+E L+L+D L + + F + I L +GFN ++ P FQ++ L +L L N
Sbjct: 70 QVELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
Query: 302 ELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
+L F N L L + N L E I++ + T SL+ L L +N +T
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQATT-SLQNLQLSSNRLT 178
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN 268
V +L +LK LVL L + P + F+ T++ L+L+ N L S+ +F+ N
Sbjct: 104 VFDKLTNLKELVLVENQLQSL-PDGV--FDKLTNLTYLNLAHNQL--QSLPKGVFDKLTN 158
Query: 269 ILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
+ LDL +N LQ S+PE F + L+ L L N+L+ F + SL ++L N
Sbjct: 159 LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
+F+ T+++ L L +N L S+ +F+ N+ +L+L N LQ F + +L
Sbjct: 104 VFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
L L+ N+L+ F + L L L +N+L
Sbjct: 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
N+ +L L N LQ F + +L+ L L N+L+ F + +L L L N+L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 328 SG----------QLSEL------IQNLSSGC--TVNSLEGLCLYANDITGPIPD--LGRF 367
L+EL +Q+L G + L+ L LY N + +PD R
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRL 204
Query: 368 LSLKVLKLGEN 378
SL+ + L +N
Sbjct: 205 TSLQYIWLHDN 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 539 FLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597
+L L N LPD + + +L+ L L NR S + LH++ L L NR+
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
P + ++ +L L L N L +PT L+ L LRL N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNI 269
L L TL L C L + P LF +++ L L DN L P + F N+
Sbjct: 104 LGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDT-----FRDLGNL 155
Query: 270 LHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
HL L N + S+PE AF+ + SL L L N + P F ++ L LYL N LS
Sbjct: 156 THLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 329 GQLSELIQNLSS 340
+E + L +
Sbjct: 215 ALPTEALAPLRA 226
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 539 FLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597
+L L N LPD + + +L+ L L NR S + LH++ L L NR+
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
P + ++ +L L L N L +PT L+ L LRL N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 234
Score = 36.2 bits (82), Expect = 0.088, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNI 269
L L TL L C L + P LF +++ L L DN L P + F N+
Sbjct: 103 LGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPDDT-----FRDLGNL 154
Query: 270 LHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
HL L N + S+PE AF+ + SL L L N + P F ++ L LYL N LS
Sbjct: 155 THLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 329 GQLSELIQNLSS 340
+E + L +
Sbjct: 214 ALPTEALAPLRA 225
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 235 WLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR 294
W T++ +L LS NHL + + F N+ +LDL NHL F + +L
Sbjct: 58 WTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115
Query: 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354
+L L +N + F +M L +LYL +N++S ELI++ G + L L L +
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD---GNKLPKLMLLDLSS 172
Query: 355 NDITG-PIPDLGRF 367
N + P+ DL +
Sbjct: 173 NKLKKLPLTDLQKL 186
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 108/278 (38%), Gaps = 38/278 (13%)
Query: 535 SNSTFLNLSKNKFSGLPDCWLN-FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593
+N + + LP L+ F + +LNL + + + + H IQ L + N
Sbjct: 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110
Query: 594 LNGELPSSLKNCSKLRVLDLRKNAL-------FGEVPTCVGGSLQNLIILRLKSNNFHGN 646
+ P +N L VL L +N L F P S+ N + R++ + F
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 647 IPFQLCHLA--FIQVLDLSLNNISGKIPKCF-SNFSMMIQEKSSNPII-----GLANEIL 698
Q L+ + +DLSL IP F +N S + + PI N I
Sbjct: 171 TSLQNLQLSSNRLTHVDLSL------IPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224
Query: 699 VVPGYIYYFRYLDNVLLTWKGSEH-EYKSTLGFVKY-----LDLSSNKLCEAIPEEITDL 752
VV G + NV LT +H T + Y +DLS N+L + + +
Sbjct: 225 VVRGPV-------NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277
Query: 753 VGLTALNLSRNNLTGLIPPKIGQ-LKSLDFLDLSRNHF 789
L L +S N L L GQ + +L LDLS NH
Sbjct: 278 QRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL 313
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
+E L+L+D L + + F + I L +GFN ++ P FQ++ L +L L N
Sbjct: 76 QVELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 302 ELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
+L +P+ F N L L + N L E I++ + T SL+ L L +N +T
Sbjct: 134 DL-SSLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQATT-SLQNLQLSSNRLT 184
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE--GGIPKFFGNMCSLNQLYLPRNKL 327
LHLD N L ++ E H+ L L L N+L+ I + M SL QL + +N +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 328 SGQLSELIQNLSSGCT-VNSLEGLCLYANDITGPIPDLGRFL--SLKVLKLGENHLNGTI 384
S + C+ SL L + +N +T I R L +KVL L N + +I
Sbjct: 387 SYDEKK------GDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIK-SI 436
Query: 385 NKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
K + L L+ L++ N V + F +++LQ ++L N
Sbjct: 437 PKQVVKLEALQELNVASNQLKSV-PDGIFDRLTSLQKIWLHTN 478
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCW----LNFNSLSILNLANNRFS 571
+ ++D S N L +T LN+S+N S L W L+ + L IL +++NR
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISEL---WTSDILSLSKLRILIISHNRIQ 58
Query: 572 GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG-GSL 630
F ++ L L +N+L + S L+ LDL NA F +P C G++
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNA-FDALPICKEFGNM 114
Query: 631 QNLIILRLKSNNFHGNIPFQLCHLAFIQVL 660
L L L + + + + HL +VL
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
+K LDL SNK+ ++IP+++ L L LN++ N L + +L SL + L N +
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 791 GNIP 794
+ P
Sbjct: 482 CSCP 485
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 733 YLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL--IPPKIGQLKSLDFLDLSRNHFS 790
+LD S+N L + + E L L L L N L L I Q+KSL LD+S+N S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN-----GELPSSLKNCSKLRVLDLRKNA 617
L+ +NN + + ++ G L ++TL L+ N+L E+ + +K+ L+ LD+ +N+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---LQQLDISQNS 385
Query: 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK 673
+ + ++L+ L + SN I F+ C I+VLDL N I IPK
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FR-CLPPRIKVLDLHSNKIKS-IPK 438
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPS--SSVYPWLFNLS 266
V +L +LK LVL L + P + F+ T++ L L N L S V+ L NL+
Sbjct: 104 VFDKLTNLKELVLVENQLQSL-PDGV--FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 267 RNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
R LDL N LQ S+PE F + L+ LSL N+L+ F + SL ++L N
Sbjct: 161 R----LDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
+F+ T+++ L L +N L S+ +F+ N+ +L L N LQ F + +L
Sbjct: 104 VFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTR 161
Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
L L +N+L+ F + L QL L N+L
Sbjct: 162 LDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 30/160 (18%)
Query: 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
N+ +L L N LQ F + +L+ L L N+L+ F + +L LYL N+L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 328 SGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKS 387
Q+L G + +L L L N L
Sbjct: 146 --------QSLPKGV---------------------FDKLTNLTRLDLDNNQLQSLPEGV 176
Query: 388 LSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
L +L+ LSL+ N V + F +++L ++L +N
Sbjct: 177 FDKLTQLKQLSLNDNQLKSV-PDGVFDRLTSLTHIWLLNN 215
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNI 269
L L TL L C L + P LF +++ L L DN+L P ++ F N+
Sbjct: 103 LGHLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNNLQALPDNT-----FRDLGNL 154
Query: 270 LHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
HL L N + S+PE AF+ + SL L L N + P F ++ L LYL N LS
Sbjct: 155 THLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 329 GQLSELIQNLSS 340
+E++ L S
Sbjct: 214 MLPAEVLVPLRS 225
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 251 NHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN-ELEGGIPK 309
+++P++S F RN+ L L N L G AF + L L L+ N +L P
Sbjct: 44 SYVPAAS-----FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPT 98
Query: 310 FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL- 368
F + L+ L+L R L L + L++ L+ L L N++ + R L
Sbjct: 99 TFRGLGHLHTLHLDRCGLQELGPGLFRGLAA------LQYLYLQDNNLQALPDNTFRDLG 152
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
+L L L N + + L L+ L L N V F ++ L L+L N+
Sbjct: 153 NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF-RDLGRLMTLYLFANN 211
Query: 429 LTLKLSHDWVPAFQLKWLSL------ASCKMGPHFPNWLQ 462
L++ + VP L++L L C+ P + WLQ
Sbjct: 212 LSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWA-WLQ 250
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 539 FLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597
+L L N LPD + + +L+ L L NR + LH++ L L N +
Sbjct: 132 YLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARV 191
Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
P + ++ +L L L N L +P V L++L LRL N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 243 IETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNE 302
+E LD ++L S + +L RN+++LD+ H + + F + SL +L +A N
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 303 L-EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI---- 357
E +P F + +L L L + +L QLS N +++SL+ L + N+
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN-----SLSSLQVLNMSHNNFFSLD 215
Query: 358 TGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHL-FKLETLSLDGNSFTGVISETFF 413
T P L SL+VL NH+ + + L H L L+L N F F
Sbjct: 216 TFPYKCLN---SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 269
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN 268
+ ++L +L L L C L ++P+ FN +S++ L++S N+ S +P+ S
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 269 ILHLDLGFNHLQGSIPEAFQHM-VSLRLLSLASNEL 303
+ LD NH+ S + QH SL L+L N+
Sbjct: 227 V--LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 728 LGFVKYLDLSSNKLCEA-IPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
L ++ L ++ N E +P+ T+L LT L+LS+ L L P L SL L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 787 NHF 789
N+F
Sbjct: 209 NNF 211
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNH 788
+ +LDLS +L + P L L LN+S NN L L SL LD S NH
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL 274
SL+ L+ +F +FN +S+E L ++ N + P +F RN+ LDL
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDL 182
Query: 275 GFNHLQGSIPEAFQHMVSLRLLSLASN 301
L+ P AF + SL++L+++ N
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 238 NLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR 294
+L T+I L+L+ N L P+++ F + LD+GFN + PE Q + L+
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAAN-----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
+L+L NEL K F +L +L+L N +
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 140/526 (26%), Positives = 207/526 (39%), Gaps = 104/526 (19%)
Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLC 351
SL+ L L+SN+++ P F + L L+L +L L+E L S+ L
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLS 238
Query: 352 LYANDI--TGPIPDLG-RFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
L + + T LG ++ +L +L L N+LN N S + L +LE
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY------------ 286
Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLI 468
FF +N+Q LF SH F +++L+L Q I
Sbjct: 287 ---FFLEYNNIQHLF----------SHSLHGLFNVRYLNLKR-----------SFTKQSI 322
Query: 469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDG 528
SL S I D W L LN+ +N I G I SN F G
Sbjct: 323 SL-ASLPKIDDFSFQWLKCLE----HLNMEDNDIPG----------------IKSNMFTG 361
Query: 529 PIPPLPSNSTFLNLSKNKFSGLPD------CWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
I N +L+LS N F+ L L + L ILNL N+ S D+ +L
Sbjct: 362 LI-----NLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 415
Query: 583 NIQTLSLRNNRLNGELPSS----LKNCSKL-----RVLDLRKNALFGEVPTCVGGSLQNL 633
+++ L L N + EL L+N ++ + L L +N+ F VP SLQ L
Sbjct: 416 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVP-----SLQRL 469
Query: 634 IILRLKSNNFHGN-IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM-IQEKSSNPII 691
++ R+ N + PFQ L + +LDLS NNI+ + I + N +
Sbjct: 470 MLRRVALKNVDSSPSPFQ--PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Query: 692 GLANEILVVPGYIYYF----RYLDNVLLTWKGSEH---EYKSTLGFVKYLDLSSNKLCEA 744
L PG YF +L + L G + E L +K +DL N L
Sbjct: 528 RLWKH--ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 585
Query: 745 IPEEITDLVGLTALNLSRNNLTGLIPPKIG-QLKSLDFLDLSRNHF 789
+ V L +LNL +N +T + G ++L LD+ N F
Sbjct: 586 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 238 NLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR 294
+L T+I L+L+ N L P+++ F + LD+GFN + PE Q + L+
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAAN-----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
+L+L NEL K F +L +L+L N +
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 140/526 (26%), Positives = 207/526 (39%), Gaps = 104/526 (19%)
Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLC 351
SL+ L L+SN+++ P F + L L+L +L L+E L S+ L
Sbjct: 177 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLS 233
Query: 352 LYANDI--TGPIPDLG-RFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
L + + T LG ++ +L +L L N+LN N S + L +LE
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY------------ 281
Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLI 468
FF +N+Q LF SH F +++L+L Q I
Sbjct: 282 ---FFLEYNNIQHLF----------SHSLHGLFNVRYLNLKRS-----------FTKQSI 317
Query: 469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDG 528
SL S I D W L LN+ +N I G I SN F G
Sbjct: 318 SL-ASLPKIDDFSFQWLKCLE----HLNMEDNDIPG----------------IKSNMFTG 356
Query: 529 PIPPLPSNSTFLNLSKNKFSGLPD------CWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
I N +L+LS N F+ L L + L ILNL N+ S D+ +L
Sbjct: 357 LI-----NLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 410
Query: 583 NIQTLSLRNNRLNGELPSS----LKNCSKL-----RVLDLRKNALFGEVPTCVGGSLQNL 633
+++ L L N + EL L+N ++ + L L +N+ F VP SLQ L
Sbjct: 411 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVP-----SLQRL 464
Query: 634 IILRLKSNNFHGN-IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM-IQEKSSNPII 691
++ R+ N + PFQ L + +LDLS NNI+ + I + N +
Sbjct: 465 MLRRVALKNVDSSPSPFQ--PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Query: 692 GLANEILVVPGYIYYF----RYLDNVLLTWKGSEH---EYKSTLGFVKYLDLSSNKLCEA 744
L PG YF +L + L G + E L +K +DL N L
Sbjct: 523 RLWKH--ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 580
Query: 745 IPEEITDLVGLTALNLSRNNLTGLIPPKIG-QLKSLDFLDLSRNHF 789
+ V L +LNL +N +T + G ++L LD+ N F
Sbjct: 581 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 17/258 (6%)
Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
L+L+ +GLP NSL L L N F + +++ L ++ N +L
Sbjct: 282 LDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLG 341
Query: 600 SS-LKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAF-- 656
+ L+ L+ LDL + + E C L+NL L+ N N P L AF
Sbjct: 342 TRCLEKLENLQKLDLSHSDI--EASDCCNLQLKNL--RHLQYLNLSYNEPLGLEDQAFKE 397
Query: 657 ---IQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD- 711
+++LD++ ++ K P F N ++ S+ ++ +N+ L+ + R+L+
Sbjct: 398 CPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAG--LQDLRHLNL 455
Query: 712 --NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI 769
N S+ +G ++ L LSS L + L + L+LS N+LTG
Sbjct: 456 QGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDS 515
Query: 770 PPKIGQLKSLDFLDLSRN 787
+ LK L +L+++ N
Sbjct: 516 MDALSHLKGL-YLNMASN 532
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 5/170 (2%)
Query: 135 IGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGXXXXXXXXXXXXXXX 194
+ +L L+YLNLS P F++ E +V ++L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 195 XXCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLP 254
L S+ +++ L L+ L L+ + S L + S+E L LS +L
Sbjct: 431 LSHCLLDTSNQ--HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 255 SSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
S + F+ RN+ HLDL N L G +A H+ L L++ASN +
Sbjct: 489 S--IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR 535
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 542 LSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSS 601
L+ F GL D S+ +NL +RFS + +Q L L LNG LPS
Sbjct: 242 LTSATFEGLCDM-----SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSG 295
Query: 602 LKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVL 660
++ + L+ L L N+ F ++ S +L L +K N ++ + L L +Q L
Sbjct: 296 IEGMNSLKKLVLNANS-FDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKL 354
Query: 661 DLSLNNISG 669
DLS ++I
Sbjct: 355 DLSHSDIEA 363
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 238 NLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR 294
+L T+I L+L+ N L P+++ F + LD+GFN + PE Q + L+
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAAN-----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
+L+L NEL K F +L +L+L N +
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 140/526 (26%), Positives = 207/526 (39%), Gaps = 104/526 (19%)
Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLC 351
SL+ L L+SN+++ P F + L L+L +L L+E L S+ L
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLS 228
Query: 352 LYANDI--TGPIPDLG-RFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
L + + T LG ++ +L +L L N+LN N S + L +LE
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY------------ 276
Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLI 468
FF +N+Q LF SH F +++L+L Q I
Sbjct: 277 ---FFLEYNNIQHLF----------SHSLHGLFNVRYLNLKR-----------SFTKQSI 312
Query: 469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDG 528
SL S I D W L LN+ +N I G I SN F G
Sbjct: 313 SL-ASLPKIDDFSFQWLKCLE----HLNMEDNDIPG----------------IKSNMFTG 351
Query: 529 PIPPLPSNSTFLNLSKNKFSGLPD------CWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
I N +L+LS N F+ L L + L ILNL N+ S D+ +L
Sbjct: 352 LI-----NLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 583 NIQTLSLRNNRLNGELPSS----LKNCSKL-----RVLDLRKNALFGEVPTCVGGSLQNL 633
+++ L L N + EL L+N ++ + L L +N+ F VP SLQ L
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVP-----SLQRL 459
Query: 634 IILRLKSNNFHGN-IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM-IQEKSSNPII 691
++ R+ N + PFQ L + +LDLS NNI+ + I + N +
Sbjct: 460 MLRRVALKNVDSSPSPFQ--PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Query: 692 GLANEILVVPGYIYYF----RYLDNVLLTWKGSEH---EYKSTLGFVKYLDLSSNKLCEA 744
L PG YF +L + L G + E L +K +DL N L
Sbjct: 518 RLWKH--ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575
Query: 745 IPEEITDLVGLTALNLSRNNLTGLIPPKIG-QLKSLDFLDLSRNHF 789
+ V L +LNL +N +T + G ++L LD+ N F
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN 268
V S L+ L L + I+ + W T + L+LS N L S+ +F
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGL---THLLKLNLSQNFL--GSIDSRMFENLDK 348
Query: 269 ILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
+ LDL +NH++ ++F + +L+ L+L +N+L+ F + SL +++L N
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 119/298 (39%), Gaps = 66/298 (22%)
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG-VISETFFSNMSNLQMLFLADN 427
SL +LKL N + + L LE L+L + G V+S FF +++L+ML L DN
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 428 SL----------------TLKLSHDWVPA--------FQ------LKWLSLASCKMGPHF 457
++ L L+ + V + FQ L+ S+ M ++
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 458 PNWLQTQN-----QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG-KLPDLSV 511
W + N + +LD+S G +++ F+D I+G K+ L +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD-------------AIAGTKIQSLIL 246
Query: 512 LKSDDIVIDISSNNFDGPIPPLPSNSTF----------LNLSKNK-FSGLPDCWLNFNSL 560
S ++ NF P N TF +LSK+K F+ L + +F L
Sbjct: 247 SNSYNMGSSFGHTNFKD-----PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301
Query: 561 SILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
L LA N + ++ L ++ L+L N L +N KL VLDL N +
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 137/358 (38%), Gaps = 76/358 (21%)
Query: 487 DLSIELFFLNLSNNHIS-------GKLPDLSVLKSDDIV--IDISSNNFDG----PIPPL 533
+L + +++LS N I+ +L DL LK + + I +N F G I L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRN 591
N FL L F+GL + L +L L G + F L +++ L LR+
Sbjct: 87 DYNQ-FLQLETGAFNGLAN-------LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
Query: 592 NRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNL-----IILRLKSNNFHG 645
N + P+S N + VLDL F +V + L N +LRL S
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLT----FNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
Query: 646 NIPFQL----CHLAF----IQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI 697
+ L C F I LDLS N + K F F + K + I+ + +
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILSNSYNM 252
Query: 698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK---LCEAIPEEITDLVG 754
G+ F+ DN T+KG E VK DLS +K L +++ TDL
Sbjct: 253 GSSFGHTN-FKDPDN--FTFKGLEASG------VKTCDLSKSKIFALLKSVFSHFTDLEQ 303
Query: 755 LT---------------------ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
LT LNLS+N L + L L+ LDLS NH
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 77/224 (34%), Gaps = 67/224 (29%)
Query: 241 TSIETLDLSDNHLPSSSVYPWL----------------FNLSRNILHLDLG------FNH 278
TSI TLDLS N S + +N+ + H + F
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 279 LQGS---------------IPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
L+ S + F H L L+LA NE+ F + L +L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
+N L S + +NL L+VL L NH+
Sbjct: 332 QNFLGSIDSRMFENLD-----------------------------KLEVLDLSYNHIRAL 362
Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
++S L L+ L+LD N V + F +++LQ ++L N
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTN 405
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN 268
+ ++L +L L L C L ++P+ FN +S++ L++S N+ S +P+ +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNS 519
Query: 269 ILHLDLGFNHLQGSIPEAFQHM-VSLRLLSLASNEL 303
+ LD NH+ S + QH SL L+L N+
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 30/199 (15%)
Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
N FG+ PT SL+ L K N F L ++ LDLS N +S K
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 676 SNF---SMMIQEKSSNPIIGLANEILVVPGYIY---------------YFRYLDNVLLTW 717
S+F S+ + S N +I +++ L + + F L N++
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 718 KGSEHEYKSTLGF------VKYLDLSSNKLCEA-IPEEITDLVGLTALNLSRNNLTGLIP 770
H + G ++ L ++ N E +P+ T+L LT L+LS+ L L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 771 PKIGQLKSLDFLDLSRNHF 789
L SL L++S N+F
Sbjct: 488 TAFNSLSSLQVLNMSHNNF 506
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNH 788
+ +LDLS +L + P L L LN+S NN L L SL LD S NH
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657
LP L LDL + L PT SL +L +L + NNF F L +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 658 QVLDLSLNNI 667
QVLD SLN+I
Sbjct: 521 QVLDYSLNHI 530
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN 268
+ ++L +L L L C L ++P+ FN +S++ L++S N+ S +P+ +
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNS 543
Query: 269 ILHLDLGFNHLQGSIPEAFQHM-VSLRLLSLASNEL 303
+ LD NH+ S + QH SL L+L N+
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNH 788
+ +LDLS +L + P L L LN+S NN L L SL LD S NH
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657
LP L LDL + L PT SL +L +L + NNF F L +
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 658 QVLDLSLNNI 667
QVLD SLN+I
Sbjct: 545 QVLDYSLNHI 554
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 555 LNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614
L+ ++L I N++ N F + L L N L ELP+ +KN S LRVLDL
Sbjct: 229 LDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278
Query: 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674
N L +P +G Q +N +P++ +L +Q L + N + + K
Sbjct: 279 HNRL-TSLPAELGSCFQLKYFYFF--DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335
Query: 675 FSNFS---MMIQEKSSNPIIGLANE 696
+ S ++ + + P I L +E
Sbjct: 336 LTEKSVTGLIFYLRDNRPEIPLPHE 360
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 36/138 (26%)
Query: 262 LFNLSRNILHLD-LGFNHLQG----SIPEAFQHMVSLRLLSLASNELEG----------- 305
+FN+S NI D L +L G +P +++ +LR+L L+ N L
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
Query: 306 -----------GIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354
+P FGN+C+L L + N L Q +++ T S+ GL Y
Sbjct: 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL-------TEKSVTGLIFYL 348
Query: 355 NDITG--PIPDLGRFLSL 370
D P+P RF+ +
Sbjct: 349 RDNRPEIPLPHERRFIEI 366
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 132/542 (24%), Positives = 204/542 (37%), Gaps = 109/542 (20%)
Query: 285 EAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTV 344
EAF+++ +LR+L L S+++ P F + L +L L LS + L G
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------LKDGYFR 120
Query: 345 N--SLEGLCLYANDITGPI--PDLGRFLSLKVLKLGENHLNGTINKSLSHL--FKLETLS 398
N +L L L N I P G+ SLK + N + L L L S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 399 LDGNSFTGVISETF------FSNMSNLQMLFLADNSLTLKLSHDWVPAF---QLKWLSLA 449
L NS +S + F NM L++L ++ N T+ ++ ++ A Q L LA
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 450 SCKMGPHF-------PNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI 502
MG F P+ QN L S++ D + + L N+ +
Sbjct: 240 HHIMGAGFGFHNIKDPD----QNTFAGLARSSVRHLDLSHGFVFSL----------NSRV 285
Query: 503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLS 561
L DL VL NL+ NK + + D + ++L
Sbjct: 286 FETLKDLKVL----------------------------NLAYNKINKIADEAFYGLDNLQ 317
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL--- 618
+LNL+ N + L + + L+ N + + K KL+ LDLR NAL
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Query: 619 --FGEVPTCV--GGSLQNLIILRLKSNNFH--------GNIPFQLCHLAFIQVLDLSLNN 666
+P G L L + L +N H +I + L + +Q+L L+ N
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 667 ISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKS 726
S C + Q S NP + E L + + + L W E
Sbjct: 438 FSS----CSGD-----QTPSENPSL----EQLFLGENMLQLAW--ETELCWDVFE----- 477
Query: 727 TLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
L ++ L L+ N L P + L L L+L+ N LT L + +L+ LD+SR
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISR 535
Query: 787 NH 788
N
Sbjct: 536 NQ 537
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
TL +K L+L+ NK+ + E L L LNLS N L L L + ++DL
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 786 RNHFS 790
+NH +
Sbjct: 347 KNHIA 351
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 156/351 (44%), Gaps = 66/351 (18%)
Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS 300
+S+ LDLS H S+ +F +++ L+L +N + EAF + +L++L+L+
Sbjct: 266 SSVRHLDLS--HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG- 359
N L F + + + L +N ++ +IQ+ + + L+ L L N +T
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIA-----IIQD-QTFKFLEKLQTLDLRDNALTTI 377
Query: 360 ----PIPDL----GRFLSLKVLKLGEN--HLNGTINKSLSHLF------KLETLSLDGNS 403
IPD+ + ++L + L N HL+ ++L L+ L+ L L+ N
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 404 FTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQT 463
F+ + S +L+ LFL +N L L W +L W + +
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLA----WET--ELCW-------------DVFEG 478
Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDI-----V 518
+ L L +++ ++ P F L+ L L+L++N L+VL +D+ +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNR-------LTVLSHNDLPANLEI 530
Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC-------WLNFNSLSI 562
+DIS N P P + + + L+++ NKF + +C WLN +++I
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDITHNKF--ICECELSTFINWLNHTNVTI 579
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
VK LDLS+N++ ++ V L AL L+ N + + L SL+ LDLS N+ S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANN 568
+L +D+ + ISS+ G +P L L L +N+ +G+ P+ + + + L L N
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHL----VKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 569 RFSGKIPDSMGF-LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
+ +I + M LH ++TL+L +N+++ +P S ++ + L L+L N
Sbjct: 89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
NL I + L N ++ P AF LR + L++N++ P F + SLN L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-SLKVLKLGENHLNG 382
NK ++EL ++L G L L AN I D + L +L +L L +N L
Sbjct: 89 GNK----ITELPKSLFEGLFSLQLLL--LNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 383 TINKSLSHLFKLETLSLDGNSF 404
+ S L ++T+ L N F
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPF 164
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 533 LPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
LP T + L +N +P + + L ++L+NN+ S PD+ L ++ +L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 592 NRLNGELPSSL 602
N++ ELP SL
Sbjct: 90 NKIT-ELPKSL 99
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
NL +I + L N + + P F+ + + +DL N + P+AFQ + SL L
Sbjct: 29 NLPETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 298 LASNEL 303
L N++
Sbjct: 87 LYGNKI 92
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA-FQHMVSLRLLS 297
+ T+ + L L DN + + + P +F+ N+ L LG N L G++P F + L +L
Sbjct: 38 IPTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLD 94
Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS 339
L +N+L F + L +L++ NKL+ +L I+ L+
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 60/262 (22%)
Query: 378 NHLNGTINKSLSHLFKLETLSLDG---NSFTGVISETFFSNMSNLQMLFLADNSLTLKLS 434
N ++GT S K E +L G N ++ E + S LQ+ N L L
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-----NRLNLSSL 74
Query: 435 HDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFF 494
D +P Q+ L + TQN LISL +L L +
Sbjct: 75 PDNLPP-QITVLEI--------------TQNALISLP---------------ELPASLEY 104
Query: 495 LNLSNNHISGKLPDL-SVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC 553
L+ +N +S LP+L + LK D+ NN +P LP+ ++N N+ + LP+
Sbjct: 105 LDACDNRLST-LPELPASLKHLDV-----DNNQLTXLPELPALLEYINADNNQLTXLPEL 158
Query: 554 WLNFNSLSILNLANNR--FSGKIPDSM-------GFLHNIQTLSLRNNRLNGELPSSLKN 604
SL +L++ NN+ F ++P+S+ L ++ + +RN+ + E
Sbjct: 159 ---PTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNH--HSEETEIFFR 213
Query: 605 CSKLRVLDLRKNALFGEVPTCV 626
C + R+ + +N L + PTC
Sbjct: 214 CRENRITHIPENILSLD-PTCT 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
VK LDLS+N++ ++ V L AL L+ N + + L SL+ LDLS N+ S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
S++TL L NHL S +N+ ++D+ N S+PE Q ++ L+L+S
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFH-SMPETCQWPEKMKYLNLSST 420
Query: 302 ELE---GGIPKFFGNM--------------CSLNQLYLPRNKL 327
+ G IPK + L +LY+ RNKL
Sbjct: 421 RIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKL 463
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 18/244 (7%)
Query: 361 IPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 420
+PD G + ++L L EN + S HL LE L L N I F+ ++NL
Sbjct: 58 VPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLN 115
Query: 421 MLFLADNSLTLKLSHDWVPAFQLK--WLSLASCKMGPHFPNWLQTQNQLISLDISNIGIS 478
L L DN LT + +V +LK WL + P + L LD+ +
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRRLDLGELKRL 173
Query: 479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLS-VLKSDDIVIDISSNNFDGPIPPLPSNS 537
I + ++ L +LNL+ ++ ++P+L+ ++K D++ D+S N+ P S
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDEL--DLSGNHLSAIRPG--SFQ 228
Query: 538 TFLNLSK-----NKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
++L K ++ + + + N SL +NLA+N + D LH+++ + L +
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288
Query: 592 NRLN 595
N N
Sbjct: 289 NPWN 292
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 22/193 (11%)
Query: 609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668
+V+ +RKN EVP G N +L L N HL +++L LS N+I
Sbjct: 47 KVICVRKN--LREVP---DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 669 GKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP-GYIYYFRYLDNVLLTWKGSEHEYKST 727
F+ + + N + N + +P G Y L + L + + E +
Sbjct: 102 TIEIGAFNGLANL------NTLELFDNRLTTIPNGAFVYLSKLKELWL--RNNPIESIPS 153
Query: 728 LGF-----VKYLDLSSNKLCEAIPE-EITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF 781
F ++ LDL K I E L L LNL+ NL + P + L LD
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDE 211
Query: 782 LDLSRNHFSGNIP 794
LDLS NH S P
Sbjct: 212 LDLSGNHLSAIRP 224
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 35/164 (21%)
Query: 265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPR 324
+S N L+L N +Q +F+H+ L +L L+ N + F + +LN L L
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 325 NKLSGQLSELIQNLSSGCTV--NSLEGLCLYANDITG-PIPDLGRFLSLKVLKLGENHLN 381
N+L+ + +G V + L+ L L N I P R SL+ L LGE
Sbjct: 122 NRLT--------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE---- 169
Query: 382 GTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA 425
L+ LS ISE F +SNL+ L LA
Sbjct: 170 ------------LKRLS--------YISEGAFEGLSNLRYLNLA 193
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
LDL NHL P +FQ ++ L+ L + ++++ F N+ SL ++ L N L+
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF-FGNMCSLNQLYLPRNKLSGQ 330
L+L N L +AF+++ LR L L +N +E IP + F + SL +L L K
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 331 LSE-LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLS 389
+SE + L + +N G+C + IP+L + L+ L+L N L+ S
Sbjct: 147 ISEAAFEGLVNLRYLNL--GMCNLKD-----IPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHD-WVPAFQLKWLSL 448
L L L L ++ I F ++ +L+ L L+ N+L + L HD + P +L+ + L
Sbjct: 200 GLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 117/304 (38%), Gaps = 47/304 (15%)
Query: 356 DITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN 415
++ IP R+L+L+ EN + + HL LE L L N I F+
Sbjct: 28 EVPASIPVNTRYLNLQ-----ENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNG 81
Query: 416 MSNLQMLFLADNSLTL--KLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
+ +L L L DN LT + +++ + WL + P + L LD+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLRRLDLG 139
Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD----GP 529
+ + I + ++ + L +LNL ++ +P+L+ L + +++S N D G
Sbjct: 140 ELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLE-ELELSGNRLDLIRPGS 197
Query: 530 IPPLPS-------NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
L S ++ + +N F L SL LNL++N D LH
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDL-------KSLEELNLSHNNLMSLPHDLFTPLH 250
Query: 583 NIQTLSLRNNR-------------LNGELPSSLKNCSKLRVLDLRKNALFGEVP----TC 625
++ + L +N L +PS+ C++ K GE+ TC
Sbjct: 251 RLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310
Query: 626 VGGS 629
G+
Sbjct: 311 YAGT 314
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 539 FLNLSKN--------KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLR 590
L LSKN F+GLP SL+ L L +NR + + +L ++ L LR
Sbjct: 63 ILQLSKNLVRKIEVGAFNGLP-------SLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 591 NNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ 650
NN + + LR LDL + + L NL L L N +IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-N 173
Query: 651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
L L ++ L+LS N + P F + +
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
+ T+ + L L DN + + + P +F+ + LDL N L F + L LSL
Sbjct: 28 IPTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 299 ASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELI 335
N+L+ IP+ F N+ SL ++L N S+++
Sbjct: 86 NDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 533 LPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
+PSN+ +LNL +N + D + + + L +L L N + L ++ TL L +
Sbjct: 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 592 NRLNGELPSSLKNCSKLRVLDLRKNAL-------FGEVPT 624
N L + + SKLR L LR N + F VP+
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
N +L+L N++Q + F+H+ L +L L N + F + SLN L L N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 328 ----SGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR----------------- 366
SG L + N +E + YA + +P L R
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISEGAF 192
Query: 367 --FLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFL 424
+LK L LG ++ N L+ L LE L + GN F I F +S+L+ L++
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWV 249
Query: 425 ADNSLTL 431
++ ++L
Sbjct: 250 MNSQVSL 256
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 286 AFQHMVSLRLLSLASNELEGGIPKF-FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC-- 342
AF+++ LR L L +N +E IP + F + SL +L L G+L +L + +S G
Sbjct: 142 AFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL------GELKKL-EYISEGAFE 193
Query: 343 TVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGN 402
+ +L+ L L +I +P+L + L+ L++ NH S L L+ L + N
Sbjct: 194 GLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV-MN 251
Query: 403 SFTGVISETFFSNMSNLQMLFLADNSLTLKLSHD 436
S +I F +++L L LA N+L+ L HD
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD 284
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
+ T+ + L L DN + + + P +F+ + LDL N L F + L LSL
Sbjct: 36 IPTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
Query: 299 ASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELI 335
N+L+ IP+ F N+ SL ++L N S+++
Sbjct: 94 NDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF-FGNMCSLNQLYLPRNKLSGQ 330
L+L N L +AF+++ LR L L +N +E IP + F + SL +L L K
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 331 LSE-LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLS 389
+SE + L + +N G+C + IP+L + L+ L+L N L+ S
Sbjct: 147 ISEAAFEGLVNLRYLNL--GMCNLKD-----IPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHD-WVPAFQLKWLSL 448
L L L L ++ I F ++ +L+ L L+ N+L + L HD + P +L+ + L
Sbjct: 200 GLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 539 FLNLSKN--------KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLR 590
L LSKN F+GLP SL+ L L +NR + + +L ++ L LR
Sbjct: 63 ILQLSKNLVRKIEVGAFNGLP-------SLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 591 NNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ 650
NN + + LR LDL + + L NL L L N +IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-N 173
Query: 651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
L L ++ L+LS N + P F + +
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 30/250 (12%)
Query: 356 DITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN 415
++ IP R+L+L+ EN + + HL LE L L N I F+
Sbjct: 28 EVPASIPVNTRYLNLQ-----ENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNG 81
Query: 416 MSNLQMLFLADNSLTL--KLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
+ +L L L DN LT + +++ + WL + P + L LD+
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLRRLDLG 139
Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD----GP 529
+ + I + ++ + L +LNL ++ +P+L+ L + +++S N D G
Sbjct: 140 ELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVRLE-ELELSGNRLDLIRPGS 197
Query: 530 IPPLPS-------NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
L S ++ + +N F L SL LNL++N D LH
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDL-------KSLEELNLSHNNLMSLPHDLFTPLH 250
Query: 583 NIQTLSLRNN 592
++ + L +N
Sbjct: 251 RLERVHLNHN 260
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
+ T+ + L L DN + + + P +F+ + LDL N L F + L LSL
Sbjct: 28 IPTTTQVLYLYDNRI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 299 ASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELI 335
N+L+ IP+ F N+ SL ++L N S+++
Sbjct: 86 NDNQLK-SIPRGAFDNLRSLTHIWLLNNPWDCACSDIL 122
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 26/127 (20%)
Query: 493 FFLNLSNNHIS-GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP 551
FF NL H+S ++ DLS LK + ++S N N KN +G+P
Sbjct: 61 FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR---------------NRLKN-LNGIP 104
Query: 552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVL 611
LS L L NN + DS+ L N++ LS+RNN+L + L SKL VL
Sbjct: 105 SA-----CLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVL 155
Query: 612 DLRKNAL 618
DL N +
Sbjct: 156 DLHGNEI 162
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 469 SLDISNIGISDTIPDWFWDLSIELF-----FLNLSNNHISGKLPDLSVLK-SDDIVIDIS 522
++D SN + + IP+ + EL F L I KLP L + S++ + DI
Sbjct: 15 TVDCSNQKL-NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE 73
Query: 523 SNNFDGPI---PPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
F+G L +++ N+ F GL SL L L +NR + DS
Sbjct: 74 EGAFEGASGVNEILLTSNRLENVQHKMFKGL-------ESLKTLMLRSNRITCVGNDSFI 126
Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
L +++ LSL +N++ P + L L+L N
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
+F+ TS+ L L N L S+ +FN ++ +L+L N LQ F + L+
Sbjct: 47 VFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104
Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
L+L +N+L+ F + L L L +N+L + L+S
Sbjct: 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 271 HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQ 330
+LDL N L+ F + SL L L N+L+ F + SL L L N+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--- 88
Query: 331 LSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH 390
Q+L +G + LK L L N L +
Sbjct: 89 -----QSLPNGV---------------------FDKLTQLKELALNTNQLQSLPDGVFDK 122
Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
L +L+ L L N V + F +++LQ ++L DN
Sbjct: 123 LTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDN 158
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 134/572 (23%), Positives = 216/572 (37%), Gaps = 92/572 (16%)
Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
L + E L+ S N LP+ ++ F+ N+ LDL + + FQ L L L
Sbjct: 28 LPNTTEFLEFSFNFLPT--IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVL 85
Query: 299 ASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
N L SL L+L + +S + NL + LE L L +N I+
Sbjct: 86 TGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLEN------LESLYLGSNHIS 139
Query: 359 G-PIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLD--GNSFTGV----ISET 411
P +LKVL N ++ + + L + LSL+ GN+ G+ T
Sbjct: 140 SIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDST 199
Query: 412 FFSNMS-----NLQMLFLA-DNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN 465
F +++ NL ++F NS T L W+ F+
Sbjct: 200 IFQSLNFGGTPNLSVIFNGLQNSTTQSL---WLGTFE----------------------- 233
Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
DI + IS + ++S+E LNL + S DISS
Sbjct: 234 -----DIDDEDISSAMLKGLCEMSVE--SLNLQEHRFS----------------DISSTT 270
Query: 526 FDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ 585
F + L+L+ GLP N L L L+ N F S ++
Sbjct: 271 FQ-----CFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLT 325
Query: 586 TLSLRNNRLNGEL-PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
L +R N L L+ L+ LDL N + E C L+NL L++ N
Sbjct: 326 HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDI--EASDCCSLQLKNLS--HLQTLNLS 381
Query: 645 GNIPFQLCHLAF-----IQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLANEIL 698
N P L AF +++LDL+ + P+ F N + + + +N+ L
Sbjct: 382 HNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHL 441
Query: 699 VVPGYIYYFRYLD---NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGL 755
+ + R+L+ N ++ T+G ++ L LSS L + L +
Sbjct: 442 LAG--LPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKM 499
Query: 756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN 787
+ ++LS N+LT + LK + +L+L+ N
Sbjct: 500 SHVDLSHNSLTCDSIDSLSHLKGI-YLNLAAN 530
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 728 LGFVKYLDLSSNKL--CEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
LG ++ LDLS N + + ++ +L L LNLS N GL + L+ LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 786 RNHFSGNIP 794
N P
Sbjct: 406 FTRLHINAP 414
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 533 LPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
LP T + L +N +P + + L ++L+NN+ S PD+ L ++ +L L
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 592 NRLNGELPSSL 602
N++ ELP SL
Sbjct: 90 NKIT-ELPKSL 99
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
+ T+ + L L N + + + P +F+ + +L+L N L F + L L+L
Sbjct: 38 IPTTTQVLHLYINQI--TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 299 ASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELI 335
N+L+ F N+ SL +YL N + S+++
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
>pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 405
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 136 GSLSKLRYLN-----LSCGTPSSKIPHPFRDLSGFEYFNVENSNLF 176
G + RY+N + GT SKI FR+L G + NVE NL
Sbjct: 198 GKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLL 243
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 37/148 (25%)
Query: 524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG--KIPDSMGFL 581
+N+ +P LP + TFL++S+N FSGL + N L LN ++N +P S+ L
Sbjct: 266 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPN---LYYLNASSNEIRSLCDLPPSLEEL 322
Query: 582 H-------NIQTLSLRNNRLNG---------ELPSSLKNC----SKLR--------VLDL 613
+ + L R RL ELP +LK + LR V DL
Sbjct: 323 NVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382
Query: 614 RKNALFGEVPTCVGGSLQNLIILRLKSN 641
R N+ EVP QNL L +++N
Sbjct: 383 RMNSHLAEVPELP----QNLKQLHVETN 406
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
L ALN+ N LT L P++ Q SL FLD+S N FSG
Sbjct: 258 SLEALNVRDNYLTDL--PELPQ--SLTFLDVSENIFSG 291
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 502 ISG-KLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSL 560
+SG +L L VL S+ + +S N +P LPS L++ +N+ + LP+ ++ +S
Sbjct: 228 VSGNRLTSLPVLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286
Query: 561 SILNLANNRFSGK 573
+ +NL N S +
Sbjct: 287 TTVNLEGNPLSER 299
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 557 FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
++L +L L N+ + P + L N+Q LS+ NN++N P L N SKL L N
Sbjct: 134 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDN 189
Query: 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPF 649
+ P SL NLI + LK N P
Sbjct: 190 KISDISPLA---SLPNLIEVHLKDNQISDVSPL 219
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
+N+L GL L N IT P L + L+L N L +++ L ++TL L
Sbjct: 68 LNNLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 124
Query: 404 FTGVISETFFSNMSNLQMLFLADNSLT 430
T V T + +SNLQ+L+L N +T
Sbjct: 125 ITDV---TPLAGLSNLQVLYLDLNQIT 148
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
+N+L GL L N IT P L + L+L N L +++ L ++TL L
Sbjct: 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 118
Query: 404 FTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQT 463
T V T + +SNLQ+L+L N +T +S L++LS+ + ++ P L
Sbjct: 119 ITDV---TPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LAN 171
Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP 507
++L +L + ISD P IE ++L NN IS P
Sbjct: 172 LSKLTTLKADDNKISDISPLASLPNLIE---VHLKNNQISDVSP 212
>pdb|4FXK|B Chain B, Human Complement C4
Length = 767
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 418 NLQMLFLADNSLTLKLSHD---WVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
+Q AD S LS D W+ AF LK LSLA ++G +T N L+S ++
Sbjct: 376 RIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD 435
Query: 475 IGISDTIP 482
D P
Sbjct: 436 GSFQDPCP 443
>pdb|4FXG|B Chain B, Complement C4 In Complex With Masp-2
pdb|4FXG|E Chain E, Complement C4 In Complex With Masp-2
Length = 767
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 418 NLQMLFLADNSLTLKLSHD---WVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
+Q AD S LS D W+ AF LK LSLA ++G +T N L+S ++
Sbjct: 376 RIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD 435
Query: 475 IGISDTIP 482
D P
Sbjct: 436 GSFQDPCP 443
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
+N++EG Y+ LG SL+ L L +NHL+ + L L+ L+L GN
Sbjct: 88 INTIEGDAFYS---------LG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 404 FTGVISETFFSNMSNLQML 422
+ + + F N++NLQ L
Sbjct: 136 YQTLGVTSLFPNLTNLQTL 154
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 216 LKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLG 275
L+ L+L+S + I + S+E LDLSDNHL S S W LS ++ +L+L
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLS-SSWFGPLS-SLKYLNLM 132
Query: 276 FNHLQG-SIPEAFQHMVSLRLLSLASNELEGGIPKF-FGNMCSLNQL 320
N Q + F ++ +L+ L + + E I + F + SLN+L
Sbjct: 133 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 179
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
+N++EG Y+ LG SL+ L L +NHL+ + L L+ L+L GN
Sbjct: 62 INTIEGDAFYS---------LG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 404 FTGVISETFFSNMSNLQMLFLAD 426
+ + + F N++NLQ L + +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGN 132
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 216 LKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLG 275
L+ L+L+S + I + S+E LDLSDNHL S S W LS ++ +L+L
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLS-SSWFGPLS-SLKYLNLM 106
Query: 276 FNHLQG-SIPEAFQHMVSLRLLSLASNELEGGIPKF-FGNMCSLNQL 320
N Q + F ++ +L+ L + + E I + F + SLN+L
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
>pdb|1DM0|A Chain A, Shiga Toxin
pdb|1DM0|L Chain L, Shiga Toxin
Length = 287
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 325 NKLSGQLSELIQNLSSGCT----VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGEN-H 379
N + + +Q +SSG T ++S G L+A D+ G P+ GRF +L+++ N +
Sbjct: 18 NVIRSAIGTPLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERNNLY 77
Query: 380 LNGTINKSLSHLFKLETLS 398
+ G +N++ + ++ S
Sbjct: 78 VTGFVNRTNNVFYRFADFS 96
>pdb|1R4Q|A Chain A, Shiga Toxin
pdb|1R4Q|L Chain L, Shiga Toxin
Length = 293
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 325 NKLSGQLSELIQNLSSGCT----VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGEN-H 379
N + + +Q +SSG T ++S G L+A D+ G P+ GRF +L+++ N +
Sbjct: 18 NVIRSAIGTPLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVERNNLY 77
Query: 380 LNGTINKSLSHLFKLETLS 398
+ G +N++ + ++ S
Sbjct: 78 VTGFVNRTNNVFYRFADFS 96
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 262 LFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLY 321
LF+ N+ ++ G N L+ F M L+ L+LASN+L+ F + SL +++
Sbjct: 165 LFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIW 224
Query: 322 LPRN 325
L N
Sbjct: 225 LHTN 228
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 199 NLTKSSDWFQVVSQLH--SLKTLVLRSCYLPPINP-----SFIWLFNLSTSIETLD---- 247
NLT ++D+ Q+ +L + + +R C LP P ++ + + +T I D
Sbjct: 53 NLTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGM 112
Query: 248 -LSDNHLPS--------------SSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVS 292
++ HL + + L RN+ HL+L N ++ F + +
Sbjct: 113 NITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLEN 171
Query: 293 LRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
L + SN+L FG M L QL L N+L + L+S
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 45/230 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 101 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 153
Query: 682 IQEK-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK 740
Q SSN + L + L N L ++ LD+SSNK
Sbjct: 154 QQLSFSSNQVTDL--------------KPLAN---------------LTTLERLDISSNK 184
Query: 741 LCE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ + ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 185 VSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 229
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 111/274 (40%), Gaps = 66/274 (24%)
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG-VISETFFSNMSNLQMLFLADN 427
SL +LKL N + + L LE L+L + G V+S FF +++L+ML L DN
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 428 SL----------------TLKLSHDWVPA--------FQ------LKWLSLASCKMGPHF 457
++ L L+ + V + FQ L+ S+ M ++
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 458 PNWLQTQN-----QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG-KLPDLSV 511
W + N + +LD+S G +++ F+D I+G K+ L +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD-------------AIAGTKIQSLIL 246
Query: 512 LKSDDIVIDISSNNFDGPIPPLPSNSTF----------LNLSKNK-FSGLPDCWLNFNSL 560
S ++ NF P N TF +LSK+K F+ L + +F L
Sbjct: 247 SNSYNMGSSFGHTNFKD-----PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301
Query: 561 SILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
L LA N + ++ L +++ L+L N+L
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLKELALDTNQL 335
>pdb|1HZF|A Chain A, C4adg Fragment Of Human Complement Factor C4a
Length = 367
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 418 NLQMLFLADNSLTLKLSHD---WVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
+Q AD S LS D W+ AF LK LSLA ++G +T N L+S ++
Sbjct: 99 RIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD 158
Query: 475 IGISDTIP 482
D P
Sbjct: 159 GSFQDPCP 166
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 44/229 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 47 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 104
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 105 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 157
Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
Q + N++ ++ + + L ++ LD+SSNK+
Sbjct: 158 QQ-------LSFGNQV----------------------TDLKPLANLTTLERLDISSNKV 188
Query: 742 CE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 189 SDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 232
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 44/229 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 105
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 106 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 158
Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
Q N + L + L N L ++ LD+SSNK+
Sbjct: 159 QQLSFGNQVTDL--------------KPLAN---------------LTTLERLDISSNKV 189
Query: 742 CE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 190 SDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 233
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 45/230 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 101 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 153
Query: 682 IQEK-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK 740
Q SSN + L + L N L ++ LD+SSNK
Sbjct: 154 QQLSFSSNQVTDL--------------KPLAN---------------LTTLERLDISSNK 184
Query: 741 LCE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ + ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 185 VSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 229
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 45/230 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 101 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 153
Query: 682 IQEK-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK 740
Q SSN + L + L N L ++ LD+SSNK
Sbjct: 154 QQLNFSSNQVTDL--------------KPLAN---------------LTTLERLDISSNK 184
Query: 741 LCE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ + ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 185 VSDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 229
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
L+ L LG N + LS L KL+TLSL+ N + ++ + ++ LQ L+L+ N
Sbjct: 132 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 186
Query: 429 LT 430
++
Sbjct: 187 IS 188
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 44/229 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 101 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 153
Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
Q N + L + L N L ++ LD+SSNK+
Sbjct: 154 QQLNFGNQVTDL--------------KPLAN---------------LTTLERLDISSNKV 184
Query: 742 CE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 185 SDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 228
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 573 KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVP-----TCVG 627
++PD+ ++TL+L N L LP+S+ + ++LR L +R E+P T
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 628 GSLQNLIILR 637
G Q L+ L+
Sbjct: 177 GEHQGLVNLQ 186
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 44/229 (19%)
Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
+ L +R K D + +L+N+ ++ NN+L P LKN +KL + + N +
Sbjct: 43 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 100
Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
P +L NL L L +N P + +L + L+LS N IS S + +
Sbjct: 101 TPLA---NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSL 153
Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
Q N + L + L N L ++ LD+SSNK+
Sbjct: 154 QQLNFGNQVTDL--------------KPLAN---------------LTTLERLDISSNKV 184
Query: 742 CE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
+ ++ ++T+L L A N N ++ + P +G L +LD L L+ N
Sbjct: 185 SDISVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQL 228
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 271 HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQ 330
L+L N LQ F + L LSL+ N+++ F + L LYL NKL
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL--- 88
Query: 331 LSELIQNLSSGC--TVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGEN 378
Q+L +G + L+ L L N + +PD R SL+ + L N
Sbjct: 89 -----QSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
L+ L LG N + LS L KL+TLSL+ N + ++ + ++ LQ L+L+ N
Sbjct: 135 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 189
Query: 429 LT 430
++
Sbjct: 190 IS 191
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 356 DITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN 415
DI G L L+ L LG N + LS L KL+TLSL+ N + ++ +
Sbjct: 146 DING----LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAG 196
Query: 416 MSNLQMLFLADNSLT 430
++ LQ L+L+ N ++
Sbjct: 197 LTKLQNLYLSKNHIS 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
L+ L LG N + LS L KL+TLSL+ N + ++ + ++ LQ L+L+ N
Sbjct: 135 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 189
Query: 429 LT 430
++
Sbjct: 190 IS 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,727,441
Number of Sequences: 62578
Number of extensions: 1037084
Number of successful extensions: 3313
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2336
Number of HSP's gapped (non-prelim): 505
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)