Query 047797
Match_columns 927
No_of_seqs 889 out of 5545
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-71 8.7E-76 692.5 50.1 583 36-841 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.7E-56 8E-61 557.6 41.6 490 241-838 93-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-38 5.4E-43 332.2 6.4 382 317-827 80-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-37 3.4E-42 326.3 9.4 382 241-676 52-437 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.1E-39 8.9E-44 324.1 -11.0 491 190-790 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.5E-38 9.7E-43 316.7 -9.4 475 215-814 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.7E-35 3.8E-40 327.8 -3.7 459 246-813 3-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.5E-35 2.1E-39 322.0 -5.0 503 219-811 3-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.6E-32 5.6E-37 288.5 -1.2 369 241-647 7-378 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.7E-32 3.8E-37 289.8 -3.0 394 290-819 6-409 (1255)
11 KOG4237 Extracellular matrix p 99.9 5.7E-26 1.2E-30 229.6 -3.5 135 265-429 65-200 (498)
12 PLN03210 Resistant to P. syrin 99.9 5.9E-22 1.3E-26 248.4 26.6 295 309-668 552-859 (1153)
13 PLN03210 Resistant to P. syrin 99.9 2.9E-21 6.2E-26 242.2 26.6 341 207-593 551-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 4.5E-24 9.7E-29 216.0 -2.6 314 518-839 50-383 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.9E-21 4.1E-26 225.2 16.8 262 466-819 202-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.3E-20 5E-25 216.2 17.8 147 516-680 324-470 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6.6E-19 1.4E-23 205.9 12.4 246 466-814 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.4E-18 9.6E-23 199.0 13.9 246 346-668 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.7E-19 1.5E-23 192.4 0.2 215 552-813 75-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.8E-17 1E-21 177.7 6.5 87 241-328 23-121 (319)
21 KOG0617 Ras suppressor protein 99.6 6.4E-18 1.4E-22 151.9 -5.2 185 554-819 29-217 (264)
22 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 148.5 -4.9 131 534-668 32-163 (264)
23 PLN03150 hypothetical protein; 99.5 3.5E-14 7.5E-19 166.3 13.3 118 730-847 419-538 (623)
24 PLN03150 hypothetical protein; 99.5 3.2E-13 6.9E-18 158.3 13.3 127 34-175 368-502 (623)
25 KOG3207 Beta-tubulin folding c 99.2 4.4E-12 9.6E-17 131.6 1.1 220 160-405 118-339 (505)
26 KOG0532 Leucine-rich repeat (L 99.2 7.3E-13 1.6E-17 141.4 -5.0 192 537-788 77-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 5.8E-11 1.2E-15 133.5 8.6 83 732-818 212-294 (394)
28 COG4886 Leucine-rich repeat (L 99.2 3.8E-11 8.3E-16 134.9 7.1 199 540-797 98-297 (394)
29 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 4.9E-17 137.7 -3.6 211 540-811 55-270 (722)
30 KOG1259 Nischarin, modulator o 99.1 3.9E-11 8.5E-16 118.1 1.4 133 630-818 283-416 (490)
31 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.8E-16 125.0 0.9 186 241-432 146-341 (505)
32 KOG1909 Ran GTPase-activating 99.0 7.1E-11 1.5E-15 119.6 2.0 39 464-502 269-310 (382)
33 KOG1909 Ran GTPase-activating 99.0 1.3E-10 2.7E-15 117.9 3.0 227 82-330 30-285 (382)
34 KOG1259 Nischarin, modulator o 99.0 2.2E-10 4.7E-15 113.0 3.3 226 83-330 183-414 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.7E-15 107.7 4.1 122 536-662 20-147 (175)
36 PF14580 LRR_9: Leucine-rich r 98.9 8.8E-10 1.9E-14 105.4 4.0 86 113-202 41-127 (175)
37 PF13855 LRR_8: Leucine rich r 98.8 2.3E-09 5E-14 84.2 3.2 60 730-789 2-61 (61)
38 KOG4658 Apoptotic ATPase [Sign 98.8 2.8E-09 6.1E-14 127.6 4.6 110 109-221 566-675 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.9E-09 6.3E-14 83.6 3.0 61 753-813 1-61 (61)
40 KOG2120 SCF ubiquitin ligase, 98.8 1.6E-10 3.4E-15 114.1 -6.3 181 115-325 186-373 (419)
41 PF08263 LRRNT_2: Leucine rich 98.8 9.3E-09 2E-13 73.5 4.2 41 36-78 1-43 (43)
42 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.4E-14 121.9 -0.6 223 534-818 94-322 (414)
43 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3.1E-14 122.2 -1.0 216 535-814 72-290 (414)
44 KOG4658 Apoptotic ATPase [Sign 98.7 1.2E-08 2.5E-13 122.4 5.6 107 114-225 545-653 (889)
45 KOG2120 SCF ubiquitin ligase, 98.7 8.6E-10 1.9E-14 109.0 -4.0 159 163-325 185-348 (419)
46 KOG2982 Uncharacterized conser 98.6 6.8E-09 1.5E-13 102.7 0.8 215 160-405 42-262 (418)
47 KOG1859 Leucine-rich repeat pr 98.6 1.1E-09 2.5E-14 120.3 -5.4 199 557-816 83-294 (1096)
48 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.5E-13 112.7 -5.8 196 187-405 83-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.3 3.1E-08 6.6E-13 86.9 -3.6 87 732-821 80-166 (177)
50 KOG2982 Uncharacterized conser 98.3 8.4E-08 1.8E-12 95.2 -1.6 90 236-325 66-156 (418)
51 KOG4341 F-box protein containi 98.2 8.5E-08 1.8E-12 99.8 -3.0 187 114-302 138-331 (483)
52 KOG4341 F-box protein containi 98.2 6.9E-08 1.5E-12 100.4 -5.3 309 82-424 138-459 (483)
53 COG5238 RNA1 Ran GTPase-activa 98.1 5.5E-06 1.2E-10 81.5 5.5 66 366-431 212-286 (388)
54 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.5E-12 80.4 -3.9 133 537-673 29-164 (177)
55 COG5238 RNA1 Ran GTPase-activa 98.0 9.1E-06 2E-10 80.0 5.0 102 110-230 26-136 (388)
56 KOG3665 ZYG-1-like serine/thre 97.8 8.2E-06 1.8E-10 95.7 1.8 138 114-255 122-264 (699)
57 KOG1644 U2-associated snRNP A' 97.7 5.1E-05 1.1E-09 71.9 5.9 59 346-404 89-152 (233)
58 PRK15386 type III secretion pr 97.7 7.1E-05 1.5E-09 80.7 7.5 77 578-667 48-124 (426)
59 PF12799 LRR_4: Leucine Rich r 97.7 2E-05 4.4E-10 56.3 2.0 35 755-790 3-37 (44)
60 PF12799 LRR_4: Leucine Rich r 97.6 4.4E-05 9.5E-10 54.6 3.1 39 729-768 1-39 (44)
61 KOG3665 ZYG-1-like serine/thre 97.6 5.6E-05 1.2E-09 88.8 4.8 92 241-336 173-271 (699)
62 KOG2739 Leucine-rich acidic nu 97.6 4.5E-05 9.8E-10 75.6 3.3 116 103-221 32-150 (260)
63 PRK15386 type III secretion pr 97.5 0.00039 8.5E-09 75.1 9.6 33 534-568 155-187 (426)
64 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 69.1 4.5 87 114-203 42-128 (233)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0011 2.5E-08 61.0 6.2 121 286-419 7-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00088 1.9E-08 66.7 3.9 42 186-227 63-104 (260)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0018 3.9E-08 59.7 5.6 124 260-395 5-129 (129)
68 KOG1947 Leucine rich repeat pr 96.4 0.00068 1.5E-08 78.7 -0.9 35 370-404 403-439 (482)
69 KOG2123 Uncharacterized conser 96.3 0.00036 7.9E-09 69.3 -3.0 84 187-280 18-101 (388)
70 KOG2123 Uncharacterized conser 96.2 0.00019 4E-09 71.3 -5.5 83 113-200 18-100 (388)
71 KOG1947 Leucine rich repeat pr 96.2 0.0016 3.5E-08 75.6 1.1 135 187-322 187-328 (482)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.0076 1.7E-07 35.7 0.3 12 755-766 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.0099 2.1E-07 35.2 0.6 12 731-742 2-13 (22)
74 KOG4308 LRR-containing protein 92.5 0.0021 4.5E-08 72.5 -9.9 88 313-405 202-303 (478)
75 KOG4308 LRR-containing protein 92.1 0.0018 4E-08 73.0 -10.9 108 560-668 89-217 (478)
76 KOG0473 Leucine-rich repeat pr 90.2 0.015 3.3E-07 56.6 -5.0 83 729-814 42-124 (326)
77 PF13504 LRR_7: Leucine rich r 88.3 0.27 5.9E-06 26.9 1.1 13 537-549 3-15 (17)
78 smart00370 LRR Leucine-rich re 86.5 0.5 1.1E-05 29.2 1.8 15 777-791 2-16 (26)
79 smart00369 LRR_TYP Leucine-ric 86.5 0.5 1.1E-05 29.2 1.8 15 777-791 2-16 (26)
80 smart00369 LRR_TYP Leucine-ric 86.2 0.48 1E-05 29.3 1.5 22 752-773 1-22 (26)
81 smart00370 LRR Leucine-rich re 86.2 0.48 1E-05 29.3 1.5 22 752-773 1-22 (26)
82 TIGR00864 PCC polycystin catio 82.2 0.61 1.3E-05 61.9 1.4 46 783-828 1-46 (2740)
83 KOG0473 Leucine-rich repeat pr 81.1 0.065 1.4E-06 52.4 -5.8 81 536-618 43-123 (326)
84 KOG3864 Uncharacterized conser 80.4 0.48 1E-05 45.8 -0.3 64 209-275 120-184 (221)
85 PF13516 LRR_6: Leucine Rich r 78.7 0.64 1.4E-05 28.0 -0.0 16 655-670 2-17 (24)
86 KOG3864 Uncharacterized conser 77.5 0.37 8.1E-06 46.5 -1.9 63 236-299 121-184 (221)
87 smart00364 LRR_BAC Leucine-ric 73.2 2.5 5.5E-05 26.0 1.5 18 535-552 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 69.8 3.6 7.9E-05 25.5 1.7 14 777-790 2-15 (26)
89 KOG4242 Predicted myosin-I-bin 68.4 20 0.00044 39.5 8.1 59 560-618 415-480 (553)
90 KOG4242 Predicted myosin-I-bin 58.7 32 0.00069 38.1 7.3 62 241-303 214-280 (553)
91 smart00368 LRR_RI Leucine rich 57.5 7.9 0.00017 24.4 1.7 14 777-790 2-15 (28)
92 PF07172 GRP: Glycine rich pro 56.9 10 0.00022 32.3 2.7 22 1-22 1-23 (95)
93 KOG3763 mRNA export factor TAP 41.1 22 0.00047 40.2 2.9 81 212-297 216-307 (585)
94 KOG3763 mRNA export factor TAP 39.0 19 0.00042 40.6 2.2 37 241-277 218-254 (585)
95 smart00367 LRR_CC Leucine-rich 39.0 12 0.00026 22.9 0.4 6 165-170 4-9 (26)
96 PF15102 TMEM154: TMEM154 prot 27.3 58 0.0012 30.0 2.8 21 884-904 68-88 (146)
97 PF08693 SKG6: Transmembrane a 23.9 1.6E+02 0.0035 20.5 3.7 6 876-881 13-18 (40)
98 TIGR00864 PCC polycystin catio 23.3 41 0.00089 45.9 1.6 32 735-766 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-71 Score=692.54 Aligned_cols=583 Identities=35% Similarity=0.538 Sum_probs=403.9
Q ss_pred CHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCC
Q 047797 36 IDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRG 115 (927)
Q Consensus 36 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~ 115 (927)
.++|++||++||+++.+|.+.+.+|+ .+++||.|.||+|+. .++|+.|+|++ +.++|.+++++..+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~--------~~i~~~~~~~~~~l~~ 94 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG--------KNISGKISSAIFRLPY 94 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC--------CCccccCChHHhCCCC
Confidence 45899999999999988888899997 467999999999974 57999999998 7889999999999999
Q ss_pred CCeeeCCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEE
Q 047797 116 LRHLDLSKNDFGGSPVPEFIG-SLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLD 194 (927)
Q Consensus 116 L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~ 194 (927)
|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++
T Consensus 95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L------------------------ 147 (968)
T PLN00113 95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL------------------------ 147 (968)
T ss_pred CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC------------------------
Confidence 99999999999875 776654 888899999988888777663 12222222222
Q ss_pred CCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEc
Q 047797 195 LSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL 274 (927)
Q Consensus 195 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~L 274 (927)
+ +|.+++..| ..+.++ ++|++|++++|.+.+ .+|..+.++. +|++|++
T Consensus 148 -s--------------------------~n~~~~~~p--~~~~~l-~~L~~L~L~~n~l~~-~~p~~~~~l~-~L~~L~L 195 (968)
T PLN00113 148 -S--------------------------NNMLSGEIP--NDIGSF-SSLKVLDLGGNVLVG-KIPNSLTNLT-SLEFLTL 195 (968)
T ss_pred -c--------------------------CCcccccCC--hHHhcC-CCCCEEECccCcccc-cCChhhhhCc-CCCeeec
Confidence 2 222222222 223333 445555555555444 4444444444 4455555
Q ss_pred cCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccC
Q 047797 275 GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354 (927)
Q Consensus 275 s~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~ 354 (927)
++|.+.+.+|..++++++|++|++++|++.+.+|..++++++|++|++++|.+++..|..
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-------------------- 255 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-------------------- 255 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh--------------------
Confidence 544444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceeccc
Q 047797 355 NDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLS 434 (927)
Q Consensus 355 n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 434 (927)
++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+.++++|+.|++++|.+.+
T Consensus 256 ---------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~--- 322 (968)
T PLN00113 256 ---------LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTG--- 322 (968)
T ss_pred ---------HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCC---
Confidence 44444555555555555555555555555555555555555544444 34445555555554444433
Q ss_pred CCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCC
Q 047797 435 HDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKS 514 (927)
Q Consensus 435 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 514 (927)
..|.++..+++|+.|++++|.+.+.+|..+...
T Consensus 323 ---------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-------------------------- 355 (968)
T PLN00113 323 ---------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-------------------------- 355 (968)
T ss_pred ---------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC--------------------------
Confidence 233334444444445544444444444333211
Q ss_pred CCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797 515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593 (927)
Q Consensus 515 ~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 593 (927)
.+|+.|++++|++++ +|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 356 --------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 356 --------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred --------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 122333333333333 44455556677777777777777777777777788888888888
Q ss_pred ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch
Q 047797 594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK 673 (927)
Q Consensus 594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 673 (927)
+++.+|..|..+++|+.|++++|.+++.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|.
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccCh
Confidence 8777777777888888888888888777777665 57888888888888887777655 457899999999999988888
Q ss_pred hhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccccc
Q 047797 674 CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV 753 (927)
Q Consensus 674 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~ 753 (927)
.+.+++.| +.|+|++|++++.+|..+.+++
T Consensus 494 ~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 494 KLGSLSEL--------------------------------------------------MQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred hhhhhhcc--------------------------------------------------CEEECcCCcceeeCChHHcCcc
Confidence 77765554 8999999999999999999999
Q ss_pred CCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCC
Q 047797 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAG 833 (927)
Q Consensus 754 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~ 833 (927)
+|++|+|++|.+++.+|..++++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...++.|
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 603 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 047797 834 NLELCGLP 841 (927)
Q Consensus 834 n~~lc~~~ 841 (927)
|+.+||.+
T Consensus 604 n~~lc~~~ 611 (968)
T PLN00113 604 NIDLCGGD 611 (968)
T ss_pred CccccCCc
Confidence 99999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-56 Score=557.57 Aligned_cols=490 Identities=34% Similarity=0.495 Sum_probs=340.7
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL 320 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 320 (927)
++|+.|+|++|++++ .+|..++...++|++|++++|++++.+|. +.+++|++|++++|.+.+.+|..++++++|++|
T Consensus 93 ~~L~~L~Ls~n~~~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCccCC-cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 444444444444444 44444442222455555555544444442 234455555555555554445555555555555
Q ss_pred eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEec
Q 047797 321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL 399 (927)
Q Consensus 321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 399 (927)
++++|.+.+..|..+.+++ +|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..++++++|++|++
T Consensus 170 ~L~~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred ECccCcccccCChhhhhCc------CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 5555555544555454444 555555555555444444 455555555555555555555555555555555555
Q ss_pred CCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCC
Q 047797 400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD 479 (927)
Q Consensus 400 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 479 (927)
++|.+.+.+|. .+.++++|++|++++|.+.+..+..+..+.+|++|++++|.+.+.+|.++..+++|+.|++++|.+.+
T Consensus 244 ~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 244 VYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred cCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 55555554444 34555555555555555544333333333333334444444444445555555555555555554444
Q ss_pred CccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCC
Q 047797 480 TIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFN 558 (927)
Q Consensus 480 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~ 558 (927)
..|..+ .. +++|+.|++++|++++ +|..+..++
T Consensus 323 ~~~~~~-------------------------~~---------------------l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 323 KIPVAL-------------------------TS---------------------LPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred cCChhH-------------------------hc---------------------CCCCCEEECcCCCCcCcCChHHhCCC
Confidence 333322 22 2346666667777766 778888999
Q ss_pred CCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEc
Q 047797 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638 (927)
Q Consensus 559 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L 638 (927)
+|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L 435 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDI 435 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999998887 7999999999
Q ss_pred cCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeee
Q 047797 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWK 718 (927)
Q Consensus 639 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (927)
++|.+++.+|..+..+++|+.|++++|++.+.+|..+.
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------------------------ 473 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------------------------ 473 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------------------------------------
Confidence 99999999999999999999999999999988876542
Q ss_pred cccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcccc
Q 047797 719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS 798 (927)
Q Consensus 719 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 798 (927)
.++|+.||+++|++++.+|..+.++++|++|+|++|++++.+|+.+.++++|++|+|++|++++.+|..+.
T Consensus 474 ---------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 474 ---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ---------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 13459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeCcCCcCcccCCCC-CcCCCCcccccCCCCCCC
Q 047797 799 LLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELC 838 (927)
Q Consensus 799 ~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc 838 (927)
.+++|++||+++|+++|.+|.. ..+..+....+.+|+..+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999964 234445555566676544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=332.22 Aligned_cols=382 Identities=26% Similarity=0.250 Sum_probs=273.4
Q ss_pred CcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCC-CCCCCEEEccCCcCCCcchhhhhccCCCC
Q 047797 317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR-FLSLKVLKLGENHLNGTINKSLSHLFKLE 395 (927)
Q Consensus 317 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 395 (927)
-+.|++++|++....+..|.+++ +|+++++.+|.++ .+|.++. ..+|+.|+|.+|.|+..-.+.++.++.|+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~------nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLP------NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred eeeeeccccccccCcHHHHhcCC------cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 45577777777777777777777 7777777777776 4455443 44599999999999988888899999999
Q ss_pred EEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCC
Q 047797 396 TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNI 475 (927)
Q Consensus 396 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n 475 (927)
.|||+.|.++ .+|...|..-.++++|+|++|+|+......|..+.+|..|.|+.|.++...+..|+++++|+.|+|..|
T Consensus 153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 9999999987 667667777788999999999998888888887777888888887777777777777777777777776
Q ss_pred ccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccc
Q 047797 476 GISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL 555 (927)
Q Consensus 476 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~ 555 (927)
+|...-. -.|.
T Consensus 232 ~irive~---------------------------------------------------------------------ltFq 242 (873)
T KOG4194|consen 232 RIRIVEG---------------------------------------------------------------------LTFQ 242 (873)
T ss_pred ceeeehh---------------------------------------------------------------------hhhc
Confidence 6531100 1233
Q ss_pred cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcE
Q 047797 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635 (927)
Q Consensus 556 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~ 635 (927)
.+++|+.|.|..|.++..-...|..+.++++|+|..|++...-..++.++++|+.|++|+|.|...-+..+. .+++|++
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~ 321 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKE 321 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-hccccee
Confidence 445555555555555554455555666666666666666655555666666666666666666443333333 4566666
Q ss_pred EEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEE
Q 047797 636 LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL 715 (927)
Q Consensus 636 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (927)
|+|++|+++...+..|..+..|++|.|++|+++..-...|..+++|
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL---------------------------------- 367 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL---------------------------------- 367 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh----------------------------------
Confidence 6666666666666666666777777777777664444444443333
Q ss_pred eeecccccccccccceeEEEccCCcccccCcc---ccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797 716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPE---EITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792 (927)
Q Consensus 716 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 792 (927)
+.|||++|.++..|.+ .|.++++|+.|+|.+|+|..+.-.+|..+++||+|||.+|.|-.+
T Consensus 368 ----------------~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 368 ----------------HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred ----------------hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 6777777777765543 477888999999999999877777899999999999999999888
Q ss_pred CCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCc
Q 047797 793 IPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFN 827 (927)
Q Consensus 793 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~ 827 (927)
-|..|..+ .|+.|-+..-.+.|.|...+..+|+.
T Consensus 432 q~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred cccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 89999988 89999888888889888766555553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=326.28 Aligned_cols=382 Identities=25% Similarity=0.265 Sum_probs=250.1
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL 320 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 320 (927)
..-..||.+++.+....-..-.+-+++.-+.||+++|++....+..|.++++|+++++.+|.++ .+|.......+|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 3445667777766321100111223336778999999999999999999999999999999998 578777777789999
Q ss_pred eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEec
Q 047797 321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL 399 (927)
Q Consensus 321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 399 (927)
+|.+|.|+....+.+..++ .|+.|||+.|.++..... |..-.++++|+|++|.|+..-...|..+.+|..|.|
T Consensus 131 ~L~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred eeeccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 9999999999999999998 999999999999876655 888889999999999999888888999999999999
Q ss_pred CCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCC
Q 047797 400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD 479 (927)
Q Consensus 400 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~ 479 (927)
+.|+++ .+|...|.++++|+.|+|..|+|.....-.|.++++|+.|.+..|.+.......|..+.++++|+|+.|++..
T Consensus 205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 999998 6777789999999999999999987767777777777777777777766666666666666666666665543
Q ss_pred CccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCC
Q 047797 480 TIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFN 558 (927)
Q Consensus 480 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~ 558 (927)
.-..|+++. ..|+.|+++.|.|.. -++++..++
T Consensus 284 vn~g~lfgL----------------------------------------------t~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 284 VNEGWLFGL----------------------------------------------TSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhccccccc----------------------------------------------chhhhhccchhhhheeecchhhhcc
Confidence 333222221 122222333333333 223344444
Q ss_pred CCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCCh--hhhhcCccCcEE
Q 047797 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPT--CVGGSLQNLIIL 636 (927)
Q Consensus 559 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~l~~L~~L 636 (927)
+|++|+|++|+++...+.+|..+..|++|+|++|.++..-...|..+++|++|||++|.++..+.+ ..+..+++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 455555555555544444444455555555555555444444444445555555555544332221 111234444444
Q ss_pred EccCcccceecCccccCCCCCCEEEccccccccccchhhc
Q 047797 637 RLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS 676 (927)
Q Consensus 637 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 676 (927)
++.+|++..+.-.+|.+++.|++|||.+|.|..+-|..|.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 4444444433334444444444444444444444444443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.1e-39 Score=324.14 Aligned_cols=491 Identities=23% Similarity=0.340 Sum_probs=278.5
Q ss_pred CcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCc
Q 047797 190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNI 269 (927)
Q Consensus 190 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L 269 (927)
|..+++++|.+.. +...+.++..|.+|++..|++...+|. ++.+ ..++.++.+.|+++ .+|+.+.... ++
T Consensus 47 l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~a---ig~l-~~l~~l~vs~n~ls--~lp~~i~s~~-~l 116 (565)
T KOG0472|consen 47 LQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPAA---IGEL-EALKSLNVSHNKLS--ELPEQIGSLI-SL 116 (565)
T ss_pred hhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCHH---HHHH-HHHHHhhcccchHh--hccHHHhhhh-hh
Confidence 3344444444433 223455555666666666666555542 4444 55666666666663 5666666666 66
Q ss_pred cEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccE
Q 047797 270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEG 349 (927)
Q Consensus 270 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~ 349 (927)
++++.++|.+. .+|++++.+-.|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|..+. ++ .|++
T Consensus 117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~------~L~~ 187 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK------RLKH 187 (565)
T ss_pred hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HH------HHHh
Confidence 66666666665 45555666666666666666666 3555566666666666666666655555444 55 6666
Q ss_pred EEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcc
Q 047797 350 LCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429 (927)
Q Consensus 350 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 429 (927)
||...|.+...+|.++.+.+|+-|+|..|++. ..| .|.+|..|+++++..|++. .+|.+...+++++..||+.+|++
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence 66666666655555666667777777777666 344 5666666777777766665 55665556666777777777766
Q ss_pred eecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhc-cccceeecccccccCCCCC
Q 047797 430 TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS-IELFFLNLSNNHISGKLPD 508 (927)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~ 508 (927)
+. .|....-+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+...--+.+.... .-|++|.= ++...-+.
T Consensus 265 ke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS 338 (565)
T KOG0472|consen 265 KE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLS 338 (565)
T ss_pred cc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCC
Confidence 63 2233334444445555544444 344455555 566666666654321111000000 00111110 00000000
Q ss_pred ccccCCCCcEEeccCCccCCCCCCC--CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccE
Q 047797 509 LSVLKSDDIVIDISSNNFDGPIPPL--PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586 (927)
Q Consensus 509 ~~~~~~~l~~l~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 586 (927)
.. .-..-...+ ...+..|.. ..+.+.|++++-+++.+|+..+.-.. -.-...
T Consensus 339 ~s-e~~~e~~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~---------------------~~~Vt~ 392 (565)
T KOG0472|consen 339 QS-EGGTETAMT----LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK---------------------SEIVTS 392 (565)
T ss_pred CC-cccccccCC----CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh---------------------hcceEE
Confidence 00 000000000 000011110 22344455555555555443222111 111445
Q ss_pred EEcccccccccCCccccCCCCCC-EEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccc
Q 047797 587 LSLRNNRLNGELPSSLKNCSKLR-VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN 665 (927)
Q Consensus 587 L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 665 (927)
.+++.|++. ++|..+..+..+. .+++++|.+ +.+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||+|.|
T Consensus 393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred EecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence 555555555 4455444444433 334444444 55555554 5777777777766665 66777777888888888888
Q ss_pred ccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccC
Q 047797 666 NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI 745 (927)
Q Consensus 666 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 745 (927)
+|. .+|.++..+..+ +.+-.++|++....
T Consensus 469 rFr-~lP~~~y~lq~l--------------------------------------------------Etllas~nqi~~vd 497 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTL--------------------------------------------------ETLLASNNQIGSVD 497 (565)
T ss_pred ccc-cchHHHhhHHHH--------------------------------------------------HHHHhccccccccC
Confidence 876 677766554333 55556678887777
Q ss_pred ccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797 746 PEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790 (927)
Q Consensus 746 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 790 (927)
|+.+.++.+|+.|||.+|.+. .+|+.++++++|++|++++|.+.
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 777999999999999999998 67889999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-38 Score=316.68 Aligned_cols=475 Identities=27% Similarity=0.363 Sum_probs=286.6
Q ss_pred CCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCC
Q 047797 215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR 294 (927)
Q Consensus 215 ~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 294 (927)
.|+.+.++.|.+....++ +.++ ..|.+|++++|+++ +.|+.++.+. .++.++.++|++. .+|+.++.+.+|+
T Consensus 46 ~l~~lils~N~l~~l~~d---l~nL-~~l~vl~~~~n~l~--~lp~aig~l~-~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED---LKNL-ACLTVLNVHDNKLS--QLPAAIGELE-ALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred chhhhhhccCchhhccHh---hhcc-cceeEEEeccchhh--hCCHHHHHHH-HHHHhhcccchHh-hccHHHhhhhhhh
Confidence 455666666666555442 3444 55666666666663 5566666665 6666666666665 4555666666666
Q ss_pred EEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEE
Q 047797 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLK 374 (927)
Q Consensus 295 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 374 (927)
.+++++|++. ..|+.++.+..|+.++..+|+++. .|+.+..+. ++..+++.+|++....|..-+++.|++||
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~------~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLS------KLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHH------HHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 6666666665 344455555566666666666553 334444444 55555555555555554422355555555
Q ss_pred ccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCC
Q 047797 375 LGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG 454 (927)
Q Consensus 375 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~ 454 (927)
...|.+. .+|+.++.+.+|+.|++..|++. .+|+ |.++..|++++++.|++...+
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lp--------------------- 244 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLP--------------------- 244 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhH---------------------
Confidence 5555554 44445555555555555555554 3442 455555555555555544222
Q ss_pred CCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCC
Q 047797 455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP 534 (927)
Q Consensus 455 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 534 (927)
.+..++++++..||+.+|++. ..|+.+.-. .+|++||+|+|.+++..+.. +.+ .
T Consensus 245 ---ae~~~~L~~l~vLDLRdNklk-e~Pde~clL-rsL~rLDlSNN~is~Lp~sL-gnl-h------------------- 298 (565)
T KOG0472|consen 245 ---AEHLKHLNSLLVLDLRDNKLK-EVPDEICLL-RSLERLDLSNNDISSLPYSL-GNL-H------------------- 298 (565)
T ss_pred ---HHHhcccccceeeeccccccc-cCchHHHHh-hhhhhhcccCCccccCCccc-ccc-e-------------------
Confidence 222335566666666666654 344444322 24555555555554332221 111 2
Q ss_pred CCCceEeCcCCCCCCCCcccccCCC---CCEEE-------ccCcc---------ccccCCCcccccCcccEEEccccccc
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNS---LSILN-------LANNR---------FSGKIPDSMGFLHNIQTLSLRNNRLN 595 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~---L~~L~-------Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~N~l~ 595 (927)
|+.|.+.+|.+..+-..+-+... |++|. ++.-. ..+..| ......+.+.|++++-+++
T Consensus 299 --L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 299 --LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLT 375 (565)
T ss_pred --eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccc
Confidence 23333333433332211111100 11110 00000 000111 1223457788888888888
Q ss_pred ccCCccccCCC--CCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch
Q 047797 596 GELPSSLKNCS--KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK 673 (927)
Q Consensus 596 ~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 673 (927)
....+.|..-. -....+++.|++ .++|..+. .+..+.+.-+.+|+..+-+|..++.+++|..|+|++|.+. .+|.
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~-~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLV-ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchH-hhhhhhhH-HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 54444443322 367889999998 67887766 4555555444444445578888999999999999988876 6777
Q ss_pred hhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccccc
Q 047797 674 CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV 753 (927)
Q Consensus 674 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~ 753 (927)
.++.+..+ +.||+|+|++ ..+|..+-.+.
T Consensus 453 e~~~lv~L--------------------------------------------------q~LnlS~NrF-r~lP~~~y~lq 481 (565)
T KOG0472|consen 453 EMGSLVRL--------------------------------------------------QTLNLSFNRF-RMLPECLYELQ 481 (565)
T ss_pred hhhhhhhh--------------------------------------------------heeccccccc-ccchHHHhhHH
Confidence 77665444 9999999999 56888888888
Q ss_pred CCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 754 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 814 (927)
.++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++++|+.|++++|||.
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888888889999888888999999999999999998 78999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=327.82 Aligned_cols=459 Identities=26% Similarity=0.320 Sum_probs=283.7
Q ss_pred EEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCC
Q 047797 246 LDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325 (927)
Q Consensus 246 L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 325 (927)
+|++..++. .+|..+...- .++.|+++.|.+-...-+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~--~ip~~i~~~~-~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE--LIPEQILNNE-ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc--ccchhhccHH-HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence 456666653 5666666655 4777777777654322233334444666666666665 45555556666666666666
Q ss_pred CCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccc
Q 047797 326 KLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFT 405 (927)
Q Consensus 326 ~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 405 (927)
.+.. .|.. ..++.+|+++.|.+|.+. ..|..+..+++|++|+++.|++.
T Consensus 79 ~i~~-vp~s-----------------------------~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 79 YIRS-VPSS-----------------------------CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred hHhh-Cchh-----------------------------hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC
Confidence 5542 2333 334444455555544444 44445555555555555555543
Q ss_pred cccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchH
Q 047797 406 GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF 485 (927)
Q Consensus 406 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~ 485 (927)
.+|. .+..++.++.+..++|...... . -..++.+++..+.+.+.++..+..+.. .||+.+|.+. ...
T Consensus 128 -~~Pl-~i~~lt~~~~~~~s~N~~~~~l----g-~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--- 194 (1081)
T KOG0618|consen 128 -PIPL-VIEVLTAEEELAASNNEKIQRL----G-QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--- 194 (1081)
T ss_pred -CCch-hHHhhhHHHHHhhhcchhhhhh----c-cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---
Confidence 3333 2444444445555544111000 0 011445555555555555544444444 4666666554 111
Q ss_pred HhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC-CCCCceEeCcCCCCCCCCcccccCCCCCEEE
Q 047797 486 WDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL-PSNSTFLNLSKNKFSGLPDCWLNFNSLSILN 564 (927)
Q Consensus 486 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 564 (927)
...+..|+.+....|+++.. ....++++.++.+.|.++...+.. +.+++++++++|+++.+|+++..+.+|+.++
T Consensus 195 ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN 270 (1081)
T ss_pred hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec
Confidence 12223566666666655421 123455666777777666444432 6677888888888888887777888888888
Q ss_pred ccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhh-----------------
Q 047797 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG----------------- 627 (927)
Q Consensus 565 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----------------- 627 (927)
..+|+++ .+|..+....+|+.|.+..|.+. -+|.....+++|++|+|..|++ +.+|..+.
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccc
Confidence 8888875 56666667777777777777777 4555566677777777777777 45554332
Q ss_pred --------hcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797 628 --------GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699 (927)
Q Consensus 628 --------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 699 (927)
...+.|+.|.+.+|.++...-..+.+...|+.|+|++|++......++.++..|
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L------------------ 409 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL------------------ 409 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh------------------
Confidence 234567777788888877766677788888888888888864433445554444
Q ss_pred ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 779 (927)
+.|+||+|+++. +|..+.++..|++|...+|++.. .| .+.++++|
T Consensus 410 --------------------------------eeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL 454 (1081)
T KOG0618|consen 410 --------------------------------EELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQL 454 (1081)
T ss_pred --------------------------------HHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcc
Confidence 889999999965 66888889999999999999884 45 78889999
Q ss_pred CeEeCCCCcCcccC-CccccCCCCCCeEeCcCCcC
Q 047797 780 DFLDLSRNHFSGNI-PSSLSLLSGLSVLDLSYNSL 813 (927)
Q Consensus 780 ~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l 813 (927)
+.+|+|.|+++... |..... ++|++||+++|..
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred eEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 99999999987543 333332 7899999999974
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=9.5e-35 Score=322.02 Aligned_cols=503 Identities=23% Similarity=0.252 Sum_probs=391.9
Q ss_pred EEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcc-hhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEE
Q 047797 219 LVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVY-PWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297 (927)
Q Consensus 219 L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 297 (927)
++++.+.++-++. .+... ..+..|+++.|.+- ..| +.+.... +|+.||+++|++. ..|..+..+.+|+.|+
T Consensus 3 vd~s~~~l~~ip~---~i~~~-~~~~~ln~~~N~~l--~~pl~~~~~~v-~L~~l~lsnn~~~-~fp~~it~l~~L~~ln 74 (1081)
T KOG0618|consen 3 VDASDEQLELIPE---QILNN-EALQILNLRRNSLL--SRPLEFVEKRV-KLKSLDLSNNQIS-SFPIQITLLSHLRQLN 74 (1081)
T ss_pred cccccccCcccch---hhccH-HHHHhhhccccccc--cCchHHhhhee-eeEEeeccccccc-cCCchhhhHHHHhhcc
Confidence 5667777666554 34444 44899999999774 333 3444444 7999999999987 7888899999999999
Q ss_pred ccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccC
Q 047797 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGE 377 (927)
Q Consensus 298 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~ 377 (927)
++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+. +|+.|+++.|.+...++.+..++.++.+..++
T Consensus 75 ~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk------nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 75 LSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK------NLQYLDLSFNHFGPIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred cchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhh------cccccccchhccCCCchhHHhhhHHHHHhhhc
Confidence 9999998 56788899999999999999876 6788888888 99999999999986666688999999999999
Q ss_pred CcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCC
Q 047797 378 NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHF 457 (927)
Q Consensus 378 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 457 (927)
|.-.. .++... ++.+++..|.+.+.++.+ ...++. .|+|.+|.+. ..+...+.+|+.+....|++...
T Consensus 147 N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l- 214 (1081)
T KOG0618|consen 147 NEKIQ----RLGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL- 214 (1081)
T ss_pred chhhh----hhcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-
Confidence 93221 233332 888899999888777653 444544 6999999987 23456667788887777766432
Q ss_pred ChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC--CC
Q 047797 458 PNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL--PS 535 (927)
Q Consensus 458 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~--~~ 535 (927)
--.-++++.|+.++|.++...+.. ...+|++++++.|++++.. ++...+.+++.++...|.++...-.. ..
T Consensus 215 ---~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~ 287 (1081)
T KOG0618|consen 215 ---EISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRIT 287 (1081)
T ss_pred ---EecCcchheeeeccCcceeecccc---ccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhh
Confidence 123578999999999887443332 2358999999999998655 88899999999999999995432222 56
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCc-ccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN-IQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
+|+.|++..|+++.+|.....+++|++|+|..|++....+..+.-... |+.|+.+.|++.......=...+.|+.|++.
T Consensus 288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 889999999999999998888999999999999998443333443433 7888888888874332222346779999999
Q ss_pred CCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA 694 (927)
Q Consensus 615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 694 (927)
+|.+++..-..+. +..+|++|+|++|++.......+.++..|++|+||+|+++ .+|.++.++..|
T Consensus 368 nN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L------------- 432 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL------------- 432 (1081)
T ss_pred cCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh-------------
Confidence 9999876544454 6899999999999998655567899999999999999998 778888877666
Q ss_pred cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccC-Cccc
Q 047797 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI-PPKI 773 (927)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l 773 (927)
++|..-+|++.. .| ++.++++|+.+|+|.|+|+... |...
T Consensus 433 -------------------------------------~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 433 -------------------------------------HTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred -------------------------------------HHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 788888898854 56 8999999999999999998653 4433
Q ss_pred cCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797 774 GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811 (927)
Q Consensus 774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 811 (927)
. -++|++|||++|.-.......|..+.++..+++.-|
T Consensus 474 p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 474 P-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred C-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 3 389999999999965566677888888888888877
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.6e-32 Score=288.47 Aligned_cols=369 Identities=25% Similarity=0.314 Sum_probs=297.2
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL 320 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 320 (927)
+-.+-.|+++|.++|...|..+.++. .++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt-~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMT-QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhh-heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 45667788888888778888888888 8899988888877 68888999999999999999887 345567788889999
Q ss_pred eCCCCCCC-CchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEec
Q 047797 321 YLPRNKLS-GQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL 399 (927)
Q Consensus 321 ~L~~n~l~-~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 399 (927)
++..|++. .-+|..+..+. .|+.|||++|++...+..+..-.++-+|+||+|+|..+...-|.+++.|-.|||
T Consensus 84 ~~R~N~LKnsGiP~diF~l~------dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLK------DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhhccccccCCCCchhcccc------cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 99888774 34566666677 888889999888866555888888888999999988666666788888888999
Q ss_pred CCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeeccccc-CCCCCChhhhcCccccEEEccCCccC
Q 047797 400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK-MGPHFPNWLQTQNQLISLDISNIGIS 478 (927)
Q Consensus 400 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~ 478 (927)
++|++. .+|+ ....+..|++|+|++|++...-...+..+.+|+.|.+++.+ -...+|..+..+.+|..+|+|.|.+.
T Consensus 158 S~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 999887 4555 37788888999999988776555555666777888887765 33467888888888999999988885
Q ss_pred CCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCC
Q 047797 479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFN 558 (927)
Q Consensus 479 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~ 558 (927)
.+|+.+.... +|+.|+||+|+++..--.. ....++++|++++|+++.+|+++..++
T Consensus 236 -~vPecly~l~-~LrrLNLS~N~iteL~~~~----------------------~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 236 -IVPECLYKLR-NLRRLNLSGNKITELNMTE----------------------GEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred -cchHHHhhhh-hhheeccCcCceeeeeccH----------------------HHHhhhhhhccccchhccchHHHhhhH
Confidence 6777776653 7888888888776321110 114578899999999999999999999
Q ss_pred CCCEEEccCcccc-ccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEE
Q 047797 559 SLSILNLANNRFS-GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637 (927)
Q Consensus 559 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 637 (927)
+|+.|.+.+|+++ .-+|..++.+.+|+++..++|++. ..|+.++.|.+|+.|.|++|++ -.+|..+. -++.|+.||
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL-iTLPeaIH-lL~~l~vLD 368 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL-ITLPEAIH-LLPDLKVLD 368 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce-eechhhhh-hcCCcceee
Confidence 9999999999986 347899999999999999999998 8999999999999999999999 67899887 699999999
Q ss_pred ccCcccceec
Q 047797 638 LKSNNFHGNI 647 (927)
Q Consensus 638 L~~n~l~~~~ 647 (927)
++.|.-.-..
T Consensus 369 lreNpnLVMP 378 (1255)
T KOG0444|consen 369 LRENPNLVMP 378 (1255)
T ss_pred ccCCcCccCC
Confidence 9999765333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-32 Score=289.75 Aligned_cols=394 Identities=27% Similarity=0.391 Sum_probs=256.6
Q ss_pred CCCCCEEEccCCcCC-CcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCC
Q 047797 290 MVSLRLLSLASNELE-GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL 368 (927)
Q Consensus 290 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~ 368 (927)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+. +|++|.+++|++....-.+..++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq------kLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ------KLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh------hhhhhhhhhhhhHhhhhhhccch
Confidence 344556677777777 456777777777777777766664 5566677666 66666666666665555566666
Q ss_pred CCCEEEccCCcCCC-cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceee
Q 047797 369 SLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLS 447 (927)
Q Consensus 369 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 447 (927)
.|+.+.+.+|++.. -+|..+.++..|+.|||++|++. +.|.. +...+++-.|+|++|+|.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNLS~N~Ie----------------- 139 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNLSYNNIE----------------- 139 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEcccCccc-----------------
Confidence 66666666666532 34555556666666666666665 34442 444444445555544443
Q ss_pred cccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccC
Q 047797 448 LASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD 527 (927)
Q Consensus 448 L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~ 527 (927)
.+|..++..+..|-+||||+|++....|.. ..
T Consensus 140 --------------------------------tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RR--------------- 171 (1255)
T KOG0444|consen 140 --------------------------------TIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RR--------------- 171 (1255)
T ss_pred --------------------------------cCCchHHHhhHhHhhhccccchhhhcCHHH-HH---------------
Confidence 333333333334444444444443222211 11
Q ss_pred CCCCCCCCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCcccc-ccCCCcccccCcccEEEcccccccccCCccccCC
Q 047797 528 GPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFS-GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605 (927)
Q Consensus 528 ~~~~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 605 (927)
+..|++|+|++|.+... -..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+.++
T Consensus 172 ------L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 172 ------LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred ------HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 22344455555543331 122335677888888876543 457888888888888888888887 788888888
Q ss_pred CCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc-cccchhhccccccccc
Q 047797 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS-GKIPKCFSNFSMMIQE 684 (927)
Q Consensus 606 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~ 684 (927)
++|+.|+||+|+| ..+..... ...+|++|+++.|+++ .+|..++.++.|+.|.+.+|+++ .-+|..++.+..|
T Consensus 245 ~~LrrLNLS~N~i-teL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L--- 318 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKI-TELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL--- 318 (1255)
T ss_pred hhhheeccCcCce-eeeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---
Confidence 8888888888888 34544554 4678888888888888 77888888888888888888876 2466666655444
Q ss_pred cCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccc
Q 047797 685 KSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN 764 (927)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 764 (927)
+.+..++|.+ +..|+.+..+..|+.|.|++|+
T Consensus 319 -----------------------------------------------evf~aanN~L-ElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 319 -----------------------------------------------EVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred -----------------------------------------------HHHHhhcccc-ccCchhhhhhHHHHHhcccccc
Confidence 7778888888 6788899999999999999999
Q ss_pred ccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC-----cCcccCCC
Q 047797 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN-----SLSGKIPL 819 (927)
Q Consensus 765 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N-----~l~~~~p~ 819 (927)
+. ..|+++.-++.|+.||+..|.-.-..|.--..-++|+.-++..- ++-|..|.
T Consensus 351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred ee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 87 56888888999999999998876444433222256666555532 34465553
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-26 Score=229.58 Aligned_cols=135 Identities=30% Similarity=0.391 Sum_probs=97.2
Q ss_pred cccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCC-CCCCCchhHHHhhccCCCc
Q 047797 265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPR-NKLSGQLSELIQNLSSGCT 343 (927)
Q Consensus 265 ~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~~ 343 (927)
+++....++|..|+|+.+.|.+|+.+++|+.|||++|.|+.+.|++|.++++|..|.+.+ |+|+......|+++.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~---- 140 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS---- 140 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH----
Confidence 344667788888888877777788888888888888888888888888877777666655 666655555555554
Q ss_pred CCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEE
Q 047797 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLF 423 (927)
Q Consensus 344 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 423 (927)
.|+.|.+.-|++.....+.|..+++|..|.+.+|.+. .++...|..+..++.+.
T Consensus 141 -------------------------slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 141 -------------------------SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLH 194 (498)
T ss_pred -------------------------HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHh
Confidence 5666666666666666777777777777777777775 55665677777777777
Q ss_pred ccCCcc
Q 047797 424 LADNSL 429 (927)
Q Consensus 424 L~~n~l 429 (927)
+..|.+
T Consensus 195 lA~np~ 200 (498)
T KOG4237|consen 195 LAQNPF 200 (498)
T ss_pred hhcCcc
Confidence 777664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.9e-22 Score=248.40 Aligned_cols=295 Identities=24% Similarity=0.252 Sum_probs=139.0
Q ss_pred ccccCCCCCcEEeCCCCCC------CCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC
Q 047797 309 KFFGNMCSLNQLYLPRNKL------SGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG 382 (927)
Q Consensus 309 ~~~~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 382 (927)
.+|.++++|+.|.+..+.. ...+|..+..++. +|+.|.+.++.+...+..+ ...+|++|++++|.+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-
Confidence 4455566666666544321 1223333333321 4555555555444322223 3345555555555544
Q ss_pred cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhh
Q 047797 383 TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQ 462 (927)
Q Consensus 383 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 462 (927)
.++..+..+++|+.|+++++...+.+|. +..+++ |+.|++++|.....+|..+.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~------------------------Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATN------------------------LETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCc------------------------ccEEEecCCCCccccchhhh
Confidence 3334444455555555554433333332 334444 44444444444445566666
Q ss_pred cCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeC
Q 047797 463 TQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNL 542 (927)
Q Consensus 463 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L 542 (927)
.+++|+.|++++|.....+|..+ .+++|+.|++++| ...+.+|..+.+|++|++
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc------------------------~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGC------------------------SRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCC------------------------CCccccccccCCcCeeec
Confidence 66666666666654433444322 1234444444443 333333444456666666
Q ss_pred cCCCCCCCCcccccCCCCCEEEccCccccc-------cCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 543 SKNKFSGLPDCWLNFNSLSILNLANNRFSG-------KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 543 ~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
++|.++.+|..+ .+++|++|++.++.... ..+..+...++|+.|++++|...+.+|..++++++|+.|++++
T Consensus 733 ~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 733 DETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 666666666543 45666666665543211 1111112234555555555554445555555555555555555
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+|++|.++
T Consensus 812 C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 812 CINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE 859 (1153)
T ss_pred CCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc
Confidence 54434444433 3455555555554433333321 234445555555444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.9e-21 Score=242.24 Aligned_cols=341 Identities=18% Similarity=0.148 Sum_probs=226.5
Q ss_pred HHhhcCCCCCCEEEcCCCCCC------CCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCc
Q 047797 207 FQVVSQLHSLKTLVLRSCYLP------PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ 280 (927)
Q Consensus 207 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~ 280 (927)
...+.++++|+.|.+..+... ...| ..+..++++|+.|++.++.+. .+|..+ ... +|++|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp--~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-~~~-~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP--EGFDYLPPKLRLLRWDKYPLR--CMPSNF-RPE-NLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecC--cchhhcCcccEEEEecCCCCC--CCCCcC-Ccc-CCcEEECcCcccc
Confidence 345777888888888655322 1222 234444467888888888773 555554 333 8888888888876
Q ss_pred CCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCccc
Q 047797 281 GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP 360 (927)
Q Consensus 281 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~ 360 (927)
.++..+..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+..++ +|+.|++++|...+.
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~------~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN------KLEDLDMSRCENLEI 696 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC------CCCEEeCCCCCCcCc
Confidence 4666777888888888887765445553 67788888888888776667777787777 888888888765556
Q ss_pred CCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceec-------c
Q 047797 361 IPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLK-------L 433 (927)
Q Consensus 361 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~ 433 (927)
+|...++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|.. ..+++|++|++.++..... .
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccc
Confidence 666336788888888887655555532 357788888888875 45542 2567777777766432111 1
Q ss_pred cCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccC
Q 047797 434 SHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK 513 (927)
Q Consensus 434 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 513 (927)
+..+..+++|+.|++++|.....+|.++.++++|+.|++++| ...+.+|... .+
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C-------------------------~~L~~LP~~~-~L 824 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC-------------------------INLETLPTGI-NL 824 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC-------------------------CCcCeeCCCC-Cc
Confidence 111112234555555555544445555555555555555544 3333344332 45
Q ss_pred CCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593 (927)
Q Consensus 514 ~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 593 (927)
++|+.+++++|.....+|..+.+++.|++++|.++.+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 56666677766666666666778999999999999999888899999999998865544577777788888888888774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=4.5e-24 Score=215.99 Aligned_cols=314 Identities=22% Similarity=0.247 Sum_probs=240.1
Q ss_pred EEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEccc-cccc
Q 047797 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN-NRLN 595 (927)
Q Consensus 518 ~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 595 (927)
.++.++-.++......+...++++|..|+|+.||+ +|..+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 45666666666666678889999999999999875 688999999999999999999999999999988877766 9999
Q ss_pred ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhh
Q 047797 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675 (927)
Q Consensus 596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 675 (927)
......|.++.+|+.|.+.-|++. .++...+..+++|..|.+.+|.+..+--..+..+.+++.+.+..|.+- +.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cd 203 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CD 203 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----cc
Confidence 888889999999999999999994 455444458999999999999998555558999999999999999854 33
Q ss_pred ccccccccccCCCCcccccccc--c---------cccccceeeeecceeEEeee-------cccccccccccceeEEEcc
Q 047797 676 SNFSMMIQEKSSNPIIGLANEI--L---------VVPGYIYYFRYLDNVLLTWK-------GSEHEYKSTLGFVKYLDLS 737 (927)
Q Consensus 676 ~~l~~l~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~L~~LdLs 737 (927)
.+++.+......+++....... + ..... ....+.+....... .-...-++.+++|+.|+|+
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 3444433222212111100000 0 00000 00000111100000 0112336789999999999
Q ss_pred CCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccC
Q 047797 738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKI 817 (927)
Q Consensus 738 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 817 (927)
+|+|+++-+.+|.++..+++|.|..|+|.......|.++..|+.|+|.+|+|+..-|..|..+.+|.+|++-.|+|.|.|
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 99999999999999999999999999999887788999999999999999999999999999999999999999999998
Q ss_pred CCCCcCCCCcccccCCCCCCCC
Q 047797 818 PLGTQLQSFNASVYAGNLELCG 839 (927)
Q Consensus 818 p~~~~~~~~~~~~~~~n~~lc~ 839 (927)
-..+.-.|+...+..||+. |.
T Consensus 363 ~l~wl~~Wlr~~~~~~~~~-Cq 383 (498)
T KOG4237|consen 363 RLAWLGEWLRKKSVVGNPR-CQ 383 (498)
T ss_pred chHHHHHHHhhCCCCCCCC-CC
Confidence 8776666776666666643 44
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.9e-21 Score=225.19 Aligned_cols=262 Identities=27% Similarity=0.338 Sum_probs=182.6
Q ss_pred cccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCC
Q 047797 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545 (927)
Q Consensus 466 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n 545 (927)
+-..|+++++.++ .+|..+. .+|+.|++++|+++. +|. ..++|++|++++|+++. +|..+++|+.|++++|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCcccccceeeccCC
Confidence 3455666666665 3555443 356677777776664 332 23567777777777764 4556677888888888
Q ss_pred CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChh
Q 047797 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC 625 (927)
Q Consensus 546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 625 (927)
.++.+|... ++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++. .+|.
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~- 339 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT- 339 (788)
T ss_pred chhhhhhch---hhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc-
Confidence 887776532 467788888888773 4432 4678888888888874 3432 245777888888873 4663
Q ss_pred hhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccce
Q 047797 626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY 705 (927)
Q Consensus 626 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 705 (927)
...+|+.|+|++|++++ +|.. .++|+.|++++|++++ +|...
T Consensus 340 ---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~------------------------------ 381 (788)
T PRK15387 340 ---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP------------------------------ 381 (788)
T ss_pred ---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc------------------------------
Confidence 13478888888888874 4432 3567778888888773 44311
Q ss_pred eeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCC
Q 047797 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785 (927)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 785 (927)
..|+.|++++|+|++ +|.. .++|+.|++++|++++ +|... .+|+.|+++
T Consensus 382 -----------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls 430 (788)
T PRK15387 382 -----------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVY 430 (788)
T ss_pred -----------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhc
Confidence 234889999999986 4533 3678999999999985 56533 468889999
Q ss_pred CCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 786 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
+|+++ .+|..+..+++|+.|++++|+|+|.+|.
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 99998 6899999999999999999999988775
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.3e-20 Score=216.22 Aligned_cols=147 Identities=26% Similarity=0.349 Sum_probs=107.0
Q ss_pred CcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccc
Q 047797 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595 (927)
Q Consensus 516 l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 595 (927)
++.|++++|++.+ +|..+.+|+.|++++|+|+++|.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++
T Consensus 324 L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 324 LCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred ccccccccCcccc-ccccccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 4445555555543 444556788888888888887753 2467778888888874 5543 356888888888888
Q ss_pred ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhh
Q 047797 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675 (927)
Q Consensus 596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 675 (927)
+ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..++++++|+.|+|++|++++..|..+
T Consensus 396 ~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 396 S-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred C-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4 4543 357888999999884 57753 346888999999988 678888889999999999999998888777
Q ss_pred ccccc
Q 047797 676 SNFSM 680 (927)
Q Consensus 676 ~~l~~ 680 (927)
..+..
T Consensus 466 ~~l~s 470 (788)
T PRK15387 466 REITS 470 (788)
T ss_pred HHHhc
Confidence 55433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.6e-19 Score=205.85 Aligned_cols=246 Identities=26% Similarity=0.468 Sum_probs=139.1
Q ss_pred cccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCC
Q 047797 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545 (927)
Q Consensus 466 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n 545 (927)
+.+.|++++++++. +|..+ .+.++.|++++|+++. +|. ..+.+|++|++++|
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lts-LP~-----------------------~l~~nL~~L~Ls~N 230 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI---PEQITTLILDNNELKS-LPE-----------------------NLQGNIKTLYANSN 230 (754)
T ss_pred CceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCCc-CCh-----------------------hhccCCCEEECCCC
Confidence 44566666666653 34322 2355556666555552 222 22345666666666
Q ss_pred CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChh
Q 047797 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC 625 (927)
Q Consensus 546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 625 (927)
+++.+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..
T Consensus 231 ~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~ 301 (754)
T PRK15370 231 QLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAH 301 (754)
T ss_pred ccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCccc
Confidence 6666655443 35666666666665 3444432 35666666666666 3444432 46666666666663 34543
Q ss_pred hhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccce
Q 047797 626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY 705 (927)
Q Consensus 626 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 705 (927)
+. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+.
T Consensus 302 lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~----------------------------- 345 (754)
T PRK15370 302 LP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP----------------------------- 345 (754)
T ss_pred ch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc-----------------------------
Confidence 32 356666666666663 34332 2466677777776653 333221
Q ss_pred eeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCC
Q 047797 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785 (927)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 785 (927)
++|+.|++++|+++. +|..+. ++|++|+|++|+|+. +|+.+. .+|+.|+++
T Consensus 346 -----------------------~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 346 -----------------------PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQAS 396 (754)
T ss_pred -----------------------CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhc
Confidence 234677777777753 454442 567777777777773 454443 357777777
Q ss_pred CCcCcccCCccc----cCCCCCCeEeCcCCcCc
Q 047797 786 RNHFSGNIPSSL----SLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 786 ~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~ 814 (927)
+|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77776 445443 33466777777777776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.4e-18 Score=198.96 Aligned_cols=246 Identities=27% Similarity=0.361 Sum_probs=117.7
Q ss_pred CccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEcc
Q 047797 346 SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA 425 (927)
Q Consensus 346 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 425 (927)
+...|+++++.++..+..+. ++|+.|++++|+++. +|..+. ++|++|++++|+++ .+|... .++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECc
Confidence 56777777777764332232 357777777777763 343332 36667777766665 344321 1244455554
Q ss_pred CCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCC
Q 047797 426 DNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGK 505 (927)
Q Consensus 426 ~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 505 (927)
+|.+. .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|++
T Consensus 250 ~N~L~-------------------------~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~L--- 295 (754)
T PRK15370 250 INRIT-------------------------ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSI--- 295 (754)
T ss_pred CCccC-------------------------cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcc---
Confidence 44443 2233221 24555555555554 2333221 2334444443333
Q ss_pred CCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCccc
Q 047797 506 LPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ 585 (927)
Q Consensus 506 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 585 (927)
++..+..+.+|+.|++++|+++.+|..+. ++|+.|++++|.+++ +|..+. ++|+
T Consensus 296 ---------------------t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~ 349 (754)
T PRK15370 296 ---------------------RTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQ 349 (754)
T ss_pred ---------------------ccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChhhc--Cccc
Confidence 32111123345555555555555554332 355555555555553 343332 4555
Q ss_pred EEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccc----cCCCCCCEEE
Q 047797 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL----CHLAFIQVLD 661 (927)
Q Consensus 586 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~ 661 (927)
.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+..|+
T Consensus 350 ~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 350 VLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred EEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 5555555554 3343332 45555555555553 3444332 24555555555554 223222 2234445555
Q ss_pred ccccccc
Q 047797 662 LSLNNIS 668 (927)
Q Consensus 662 Ls~N~l~ 668 (927)
+.+|+++
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 5555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=6.7e-19 Score=192.37 Aligned_cols=215 Identities=25% Similarity=0.267 Sum_probs=130.9
Q ss_pred cccccCCCCCEEEccCccccccCCCcccccCc---ccEEEcccccccc----cCCccccCC-CCCCEEecCCCcCCCCCC
Q 047797 552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHN---IQTLSLRNNRLNG----ELPSSLKNC-SKLRVLDLRKNALFGEVP 623 (927)
Q Consensus 552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~p 623 (927)
..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++..+
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 44555667777777777776544444444444 7777777777763 222344555 777888888877754322
Q ss_pred ----hhhhhcCccCcEEEccCccccee----cCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccc
Q 047797 624 ----TCVGGSLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN 695 (927)
Q Consensus 624 ----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 695 (927)
..+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+...
T Consensus 155 ~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----------------- 216 (319)
T cd00116 155 EALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET----------------- 216 (319)
T ss_pred HHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----------------
Confidence 2222 456777788877777632 23344556678888888887764332222110
Q ss_pred ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccc-----ccCCCEEecccccccc---
Q 047797 696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD-----LVGLTALNLSRNNLTG--- 767 (927)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~--- 767 (927)
...+++|+.|++++|.+++.....+.. .+.|++|++++|.++.
T Consensus 217 -----------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 217 -----------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred -----------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 112345678888888777533333322 3678888888888762
Q ss_pred -cCCccccCCCCCCeEeCCCCcCccc----CCccccCC-CCCCeEeCcCCcC
Q 047797 768 -LIPPKIGQLKSLDFLDLSRNHFSGN----IPSSLSLL-SGLSVLDLSYNSL 813 (927)
Q Consensus 768 -~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 813 (927)
.+...+..+++|+++|+++|.++.. ....+... +.|+++++.+|++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2234455667888888888888744 33334444 5788888888764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=4.8e-17 Score=177.74 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=41.7
Q ss_pred cCccEEEcCCCCCCCC---CcchhHhhcccCccEEEccCCcCcC------CcchhhhcCCCCCEEEccCCcCCCcCcccc
Q 047797 241 TSIETLDLSDNHLPSS---SVYPWLFNLSRNILHLDLGFNHLQG------SIPEAFQHMVSLRLLSLASNELEGGIPKFF 311 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~---~~~~~l~~~~~~L~~L~Ls~n~i~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 311 (927)
+.|+.|+++++.+++. .+++.+...+ ++++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 5566666666665331 1222222222 46666666655541 122344455555555555555544333333
Q ss_pred cCCCC---CcEEeCCCCCCC
Q 047797 312 GNMCS---LNQLYLPRNKLS 328 (927)
Q Consensus 312 ~~l~~---L~~L~L~~n~l~ 328 (927)
..+.+ |++|++++|.++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHhccCcccEEEeeCCccc
Confidence 33333 555555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=6.4e-18 Score=151.88 Aligned_cols=185 Identities=29% Similarity=0.528 Sum_probs=110.9
Q ss_pred cccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccC
Q 047797 554 WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633 (927)
Q Consensus 554 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L 633 (927)
+.++..++.|.+|+|+++ .+|..+..+.+|+.|++++|+|+ .+|.+++.+++|+.|+++-|++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--------------- 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--------------- 91 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------------
Confidence 344555666666666666 34445555666666666666665 4455555555555555555554
Q ss_pred cEEEccCcccceecCccccCCCCCCEEEcccccccc-ccchhhccccccccccCCCCccccccccccccccceeeeecce
Q 047797 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN 712 (927)
Q Consensus 634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (927)
. ..|..|+.++.|+.|||++|++.. .+|..|..++.
T Consensus 92 ----------~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t-------------------------------- 128 (264)
T KOG0617|consen 92 ----------N-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT-------------------------------- 128 (264)
T ss_pred ----------h-cCccccCCCchhhhhhccccccccccCCcchhHHHH--------------------------------
Confidence 3 444555555555555555555542 23333333222
Q ss_pred eEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797 713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792 (927)
Q Consensus 713 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 792 (927)
|+.|+|+.|.+ +.+|..++++++|+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .
T Consensus 129 ------------------lralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 129 ------------------LRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ------------------HHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 25666677766 456667777777777777777776 45777777777777777777777 5
Q ss_pred CCccccCCC---CCCeEeCcCCcCcccCCC
Q 047797 793 IPSSLSLLS---GLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 793 ~p~~l~~l~---~L~~L~ls~N~l~~~~p~ 819 (927)
+|..++++. +=+.+.+.+|+|.-.|..
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 666665543 234566778888765543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-17 Score=148.45 Aligned_cols=131 Identities=34% Similarity=0.460 Sum_probs=115.8
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
+..++.|-+++|+++.+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. +.|..|+.++.|+.||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45788899999999999999999999999999999998 67889999999999999999998 89999999999999999
Q ss_pred CCCcCCC-CCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 614 RKNALFG-EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 614 s~N~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
.+|.+.. .+|..++ .+..|+.|.|++|.+. .+|..++++++|+.|.+.+|.+-
T Consensus 110 tynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred cccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 9999854 5677777 6888888888888887 67777888888888877777664
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=3.5e-14 Score=166.31 Aligned_cols=118 Identities=41% Similarity=0.693 Sum_probs=104.9
Q ss_pred ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 809 (927)
.++.|+|++|.++|.+|..+.++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCC--cCCCCcccccCCCCCCCCCCCCCCCC
Q 047797 810 YNSLSGKIPLGT--QLQSFNASVYAGNLELCGLPLPNKCA 847 (927)
Q Consensus 810 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~~~~C~ 847 (927)
+|+++|.+|..- .........+.+|+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999742 12223345688999999977655673
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=3.2e-13 Score=158.26 Aligned_cols=127 Identities=31% Similarity=0.520 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCc----cccceeecC--CC--CCEEEEECCCCchhhhhccccccc
Q 047797 34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCC----KWRGVRCSN--TT--GHVKVLNLQTSDHEFARRKFLKGK 105 (927)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~l~g~ 105 (927)
.+.++|.+||+++|+++.++.. .+|. ++.|| .|.||.|.. .. .+|+.|+|++ +.+.|.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~g~ 433 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLRGF 433 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC--------CCcccc
Confidence 4567899999999999976542 4796 44553 799999952 22 2599999999 889999
Q ss_pred cCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCc
Q 047797 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175 (927)
Q Consensus 106 ~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~ 175 (927)
+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 999999999999999999999986 999999999999999999999999999999999999988877764
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.4e-12 Score=131.59 Aligned_cols=220 Identities=22% Similarity=0.193 Sum_probs=133.1
Q ss_pred CCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhcccc
Q 047797 160 RDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNL 239 (927)
Q Consensus 160 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~ 239 (927)
+++.+|+...|.++..-..+.-.....|++++.||||.|-+.....+......+|+|+.|+++.|++.....+ .....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhh
Confidence 4566666666655544332222346678888888889888888777777788899999999999987766552 22333
Q ss_pred ccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCCCc
Q 047797 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLN 318 (927)
Q Consensus 240 ~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~ 318 (927)
.+.|+.|.|+.|.++- ....++....|+|+.|+|.+|...........-+..|+.|||++|++.... -...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 4788888888888865 333344444448888888887543344444555677777888877765321 13345666777
Q ss_pred EEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCc-chhhhhccCCCCEE
Q 047797 319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT-INKSLSHLFKLETL 397 (927)
Q Consensus 319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L 397 (927)
.|+++.+.+....-...+ .......+++|++|+++.|++..- .-..+..+++|+.|
T Consensus 275 ~Lnls~tgi~si~~~d~~-----------------------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVE-----------------------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred hhhccccCcchhcCCCcc-----------------------chhhhcccccceeeecccCccccccccchhhccchhhhh
Confidence 777776665432110000 000023455667777777666421 11234445666666
Q ss_pred ecCCcccc
Q 047797 398 SLDGNSFT 405 (927)
Q Consensus 398 ~L~~n~l~ 405 (927)
.+..|.+.
T Consensus 332 ~~~~n~ln 339 (505)
T KOG3207|consen 332 RITLNYLN 339 (505)
T ss_pred hccccccc
Confidence 66666665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=7.3e-13 Score=141.39 Aligned_cols=192 Identities=29% Similarity=0.469 Sum_probs=146.3
Q ss_pred CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616 (927)
Q Consensus 537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 616 (927)
-...|++.|++..+|..+..+..|+.+.+.+|.+. .+|.+++++..|++++|+.|+++ ..|..+..|+ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 45678888888888888888888888888888887 67888888888888888888888 6677777766 888888888
Q ss_pred cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccc
Q 047797 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE 696 (927)
Q Consensus 617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 696 (927)
++ +.+|..++ ..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++
T Consensus 154 kl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp----------------- 212 (722)
T KOG0532|consen 154 KL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP----------------- 212 (722)
T ss_pred cc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-----------------
Confidence 88 67888887 6888888888888887 56777888888888888888886 4444444322
Q ss_pred cccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc--
Q 047797 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG-- 774 (927)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-- 774 (927)
|..||+|+|+++. +|-.|.+|+.|++|-|.+|.+. ..|..+.
T Consensus 213 ----------------------------------Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k 256 (722)
T KOG0532|consen 213 ----------------------------------LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK 256 (722)
T ss_pred ----------------------------------eeeeecccCceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence 3678888888854 7788888888888888888887 3444443
Q ss_pred -CCCCCCeEeCCCCc
Q 047797 775 -QLKSLDFLDLSRNH 788 (927)
Q Consensus 775 -~l~~L~~L~Ls~N~ 788 (927)
...--++|+..-++
T Consensus 257 GkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 257 GKVHIFKYLSTQACQ 271 (722)
T ss_pred cceeeeeeecchhcc
Confidence 23344566666663
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=5.8e-11 Score=133.53 Aligned_cols=83 Identities=45% Similarity=0.624 Sum_probs=42.0
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 811 (927)
++|++++|.+. .++..+.++..+..|.+++|++... +..++.+++++.|++++|.++.. +. ++.+.+++.|++++|
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccc-cc-ccccCccCEEeccCc
Confidence 44555555321 2333445555555555555555432 34455555555555555555532 22 555555555555555
Q ss_pred cCcccCC
Q 047797 812 SLSGKIP 818 (927)
Q Consensus 812 ~l~~~~p 818 (927)
.++...|
T Consensus 288 ~~~~~~~ 294 (394)
T COG4886 288 SLSNALP 294 (394)
T ss_pred cccccch
Confidence 5554444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=3.8e-11 Score=134.95 Aligned_cols=199 Identities=35% Similarity=0.555 Sum_probs=118.9
Q ss_pred EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccC-cccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLH-NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618 (927)
Q Consensus 540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 618 (927)
+++..+.+..-+..+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence 44555554332233334455666666666666 3333444442 6666666666666 3444556666667777777666
Q ss_pred CCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccc
Q 047797 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL 698 (927)
Q Consensus 619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 698 (927)
..+|.... ..++|+.|++++|++. .+|........|+++++++|++. ..+..+.++.
T Consensus 176 -~~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~------------------- 232 (394)
T COG4886 176 -SDLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK------------------- 232 (394)
T ss_pred -hhhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-------------------
Confidence 34444432 3566777777777766 44444444555777777777532 2233333322
Q ss_pred cccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCC
Q 047797 699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKS 778 (927)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 778 (927)
.+..+.+++|++.. ++..++.+++++.|++++|.++...+ ++.+.+
T Consensus 233 -------------------------------~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~ 278 (394)
T COG4886 233 -------------------------------NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTN 278 (394)
T ss_pred -------------------------------cccccccCCceeee-ccchhccccccceecccccccccccc--ccccCc
Confidence 23556677777644 25667777888888888888885533 778888
Q ss_pred CCeEeCCCCcCcccCCccc
Q 047797 779 LDFLDLSRNHFSGNIPSSL 797 (927)
Q Consensus 779 L~~L~Ls~N~l~~~~p~~l 797 (927)
++.||+++|.++...|...
T Consensus 279 l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 279 LRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cCEEeccCccccccchhhh
Confidence 8888888888886666544
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2.3e-12 Score=137.69 Aligned_cols=211 Identities=24% Similarity=0.436 Sum_probs=165.1
Q ss_pred EeCcCCCCCCCCccc--ccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797 540 LNLSKNKFSGLPDCW--LNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617 (927)
Q Consensus 540 L~L~~n~l~~lp~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 617 (927)
|.|++-+++..|..- ..+.--...|++.|++. ++|..++.+..|+.+.+..|.+. .+|..+.++..|++|||+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 455666666655332 23445567899999998 67888888899999999999998 788899999999999999999
Q ss_pred CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccc
Q 047797 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI 697 (927)
Q Consensus 618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 697 (927)
+ ..+|..++ .+ -|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.++
T Consensus 133 l-S~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------- 191 (722)
T KOG0532|consen 133 L-SHLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------- 191 (722)
T ss_pred h-hcCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------
Confidence 9 67887776 34 4899999999998 77888888899999999999987 566666665555
Q ss_pred ccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCC
Q 047797 698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK 777 (927)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 777 (927)
+.|.+..|++.. .|+++.. -.|..||+|.|+++ .||-.|.+|+
T Consensus 192 ----------------------------------r~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~ 234 (722)
T KOG0532|consen 192 ----------------------------------RDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMR 234 (722)
T ss_pred ----------------------------------HHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchhhhhhh
Confidence 778888888866 4555664 45888999999998 6788999999
Q ss_pred CCCeEeCCCCcCcccCCccc---cCCCCCCeEeCcCC
Q 047797 778 SLDFLDLSRNHFSGNIPSSL---SLLSGLSVLDLSYN 811 (927)
Q Consensus 778 ~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N 811 (927)
.|++|-|.+|.+. ..|..+ +...-.++|+..-+
T Consensus 235 ~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 235 HLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 9999999999998 455553 33344677777776
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.9e-11 Score=118.15 Aligned_cols=133 Identities=30% Similarity=0.308 Sum_probs=101.3
Q ss_pred CccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeee
Q 047797 630 LQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRY 709 (927)
Q Consensus 630 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (927)
.+.|+++||++|.|+ .+.++..-+|.++.|++|+|.+... .++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL------------------------------- 325 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL------------------------------- 325 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh-------------------------------
Confidence 456888888888887 5566777788888888888887621 111
Q ss_pred cceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcC
Q 047797 710 LDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789 (927)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 789 (927)
..+++|+.||||+|.++...- .-..+-+.+.|+|++|.|... +.++++-+|..||+++|+|
T Consensus 326 ----------------a~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 326 ----------------AELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred ----------------hhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccch
Confidence 123456888999988865432 334577889999999999877 7788899999999999999
Q ss_pred cccC-CccccCCCCCCeEeCcCCcCcccCC
Q 047797 790 SGNI-PSSLSLLSGLSVLDLSYNSLSGKIP 818 (927)
Q Consensus 790 ~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p 818 (927)
.... -..+++|+-|+.+.+.+||+.+...
T Consensus 387 e~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 387 EELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHHHhcccccccHHHHHhhcCCCccccch
Confidence 7533 2458899999999999999987644
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.6e-11 Score=124.97 Aligned_cols=186 Identities=22% Similarity=0.181 Sum_probs=104.4
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchh-hhcCCCCCEEEccCCcCCCcC-cccccCCCCCc
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA-FQHMVSLRLLSLASNELEGGI-PKFFGNMCSLN 318 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~ 318 (927)
++++.||||.|-+........+..-.|+|+.|+++.|++....... -..+++|+.|.++.|.++... ......+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 5556666666544331222223322336666666666554221111 124566677777777666322 22334567777
Q ss_pred EEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccC--CCCCCCCCCCEEEccCCcCCCcc-hhh-----hhc
Q 047797 319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI--PDLGRFLSLKVLKLGENHLNGTI-NKS-----LSH 390 (927)
Q Consensus 319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~--~~l~~l~~L~~L~Ls~n~l~~~~-~~~-----l~~ 390 (927)
.|+|..|............+. .|+.|+|++|.+.... +..+.++.|+.|+++.+.+...- |+. ...
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~------~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQ------TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred Hhhhhcccccceecchhhhhh------HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 777777742222222222333 7777788777776544 33778888888888888876532 221 345
Q ss_pred cCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceec
Q 047797 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLK 432 (927)
Q Consensus 391 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 432 (927)
+++|++|++..|++...-.-..+..+++|+.|.+..|.+...
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 678888888888875332222345566777777777766543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=7.1e-11 Score=119.63 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=18.1
Q ss_pred CccccEEEccCCccCCCccchHHh---hccccceeecccccc
Q 047797 464 QNQLISLDISNIGISDTIPDWFWD---LSIELFFLNLSNNHI 502 (927)
Q Consensus 464 ~~~L~~L~Ls~n~l~~~~~~~~~~---~~~~L~~L~Ls~n~l 502 (927)
.++|+.|.+.+|.|+......+.. -.+.|+.|++++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 345555555555554322111111 124566666666665
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=1.3e-10 Score=117.86 Aligned_cols=227 Identities=22% Similarity=0.200 Sum_probs=113.4
Q ss_pred CCEEEEECCCCchhhhhcccccc----ccCccccCCCCCCeeeCCCCCCCCC--CCCc-------cccCCCCCCEEECCC
Q 047797 82 GHVKVLNLQTSDHEFARRKFLKG----KISPALLKLRGLRHLDLSKNDFGGS--PVPE-------FIGSLSKLRYLNLSC 148 (927)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~~~l~g----~~~~~l~~l~~L~~L~Ls~n~~~~~--~lp~-------~l~~l~~L~~L~Ls~ 148 (927)
..++.|+|+| +.+.- .+.+.+.+.+.|+.-++|+-.-... .+|. .+..+++|++||||.
T Consensus 30 ~s~~~l~lsg--------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 30 DSLTKLDLSG--------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred CceEEEeccC--------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4578888888 44432 2445667777888888775422110 1332 345567888888888
Q ss_pred CCCCCCCCccC----CCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCC
Q 047797 149 GTPSSKIPHPF----RDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSC 224 (927)
Q Consensus 149 n~~~~~~p~~l----~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n 224 (927)
|.+...-+..| +.++.|++|.|.+|.+-....- .+++ -|.+| ......+.-++|+++...+|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l~~--al~~l-----------~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG-RLGR--ALFEL-----------AVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH-HHHH--HHHHH-----------HHHhccCCCcceEEEEeecc
Confidence 87765544333 4556666666655544221110 0000 00000 00112233455666666666
Q ss_pred CCCCCCCc-hhhccccccCccEEEcCCCCCCCCCc--chhHhhcccCccEEEccCCcCcCC----cchhhhcCCCCCEEE
Q 047797 225 YLPPINPS-FIWLFNLSTSIETLDLSDNHLPSSSV--YPWLFNLSRNILHLDLGFNHLQGS----IPEAFQHMVSLRLLS 297 (927)
Q Consensus 225 ~l~~~~~~-~~~l~~~~~~L~~L~Ls~n~l~~~~~--~~~l~~~~~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~ 297 (927)
++...... +...++..+.|+.+.++.|.|....+ ...-+..+++|+.|||.+|.++.. +.+.+..+++|++|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 55544331 11122223556666666665522111 111122223666666666665432 334455666677777
Q ss_pred ccCCcCCCcCcccc-----cCCCCCcEEeCCCCCCCCc
Q 047797 298 LASNELEGGIPKFF-----GNMCSLNQLYLPRNKLSGQ 330 (927)
Q Consensus 298 Ls~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~ 330 (927)
+++|.+......+| ...++|++|.+.+|.++..
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 77776654333222 2356666666666666543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=2.2e-10 Score=113.03 Aligned_cols=226 Identities=23% Similarity=0.288 Sum_probs=136.3
Q ss_pred CEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCC---CCCccC
Q 047797 83 HVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSS---KIPHPF 159 (927)
Q Consensus 83 ~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~---~~p~~l 159 (927)
++++|.+++...-+.+++-+...+|-.+.-+++|..+.+|.+.-.. +......-+.|+++...+..... .+|...
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccccccccchhh
Confidence 5777777774432222233333455556777888888888775433 22222334567777776554332 122111
Q ss_pred CCCCCCcEEecCCCCc--cCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhcc
Q 047797 160 RDLSGFEYFNVENSNL--FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLF 237 (927)
Q Consensus 160 ~~l~~L~~L~Ls~~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~ 237 (927)
..|...... ...+....+..-+.|+++|||+|.++.. -.++.-.|.++.|+++.|.+..... +.
T Consensus 261 -------~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~n----La 326 (490)
T KOG1259|consen 261 -------LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQN----LA 326 (490)
T ss_pred -------hcCccCCCCCccCCceEEecchHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeehh----hh
Confidence 111111111 1111112233346788888888888763 3566677888888888888776643 44
Q ss_pred ccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCC
Q 047797 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCS 316 (927)
Q Consensus 238 ~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~ 316 (927)
.+ ++|+.||||+|.++ .+..|-.++- +++.|.|++|.+... ..++++-+|..||+++|+|.... ...++++|.
T Consensus 327 ~L-~~L~~LDLS~N~Ls--~~~Gwh~KLG-NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 327 EL-PQLQLLDLSGNLLA--ECVGWHLKLG-NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred hc-ccceEeecccchhH--hhhhhHhhhc-CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 55 88888888888774 3444444555 788888888877532 34677777888888888776332 255777788
Q ss_pred CcEEeCCCCCCCCc
Q 047797 317 LNQLYLPRNKLSGQ 330 (927)
Q Consensus 317 L~~L~L~~n~l~~~ 330 (927)
|+++.|.+|.+.+.
T Consensus 401 LE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 401 LETLRLTGNPLAGS 414 (490)
T ss_pred HHHHhhcCCCcccc
Confidence 88888877777654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4e-10 Score=107.72 Aligned_cols=122 Identities=29% Similarity=0.354 Sum_probs=34.7
Q ss_pred CCceEeCcCCCCCCCCcccc-cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccc-cCCCCCCEEec
Q 047797 536 NSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDL 613 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 613 (927)
.+++|+|++|+|+.+. .+. .+.+|+.|++++|.++.. +.+..+++|++|++++|+|+.. ++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEEC
Confidence 4566666666666653 333 356666666666666633 2355566666666666666633 2233 34666666666
Q ss_pred CCCcCCCCCC-hhhhhcCccCcEEEccCcccceec---CccccCCCCCCEEEc
Q 047797 614 RKNALFGEVP-TCVGGSLQNLIILRLKSNNFHGNI---PFQLCHLAFIQVLDL 662 (927)
Q Consensus 614 s~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L 662 (927)
++|+|...-. ..+. .+++|++|++.+|+++... ...+..+|+|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666632211 1222 4566666666666665321 112445566665553
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=8.8e-10 Score=105.41 Aligned_cols=86 Identities=30% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccC-CCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPF-RDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191 (927)
Q Consensus 113 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~ 191 (927)
+.+|++|||++|.++.. ..+..+++|++|++++|.++.. +..+ ..+++|++|++++|.+.....+..++.+++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 34444444444444432 1234444444444444444422 1122 23444444444444444444444444444444
Q ss_pred EEECCCccCCC
Q 047797 192 HLDLSCINLTK 202 (927)
Q Consensus 192 ~L~Ls~n~l~~ 202 (927)
+|++.+|+++.
T Consensus 117 ~L~L~~NPv~~ 127 (175)
T PF14580_consen 117 VLSLEGNPVCE 127 (175)
T ss_dssp EEE-TT-GGGG
T ss_pred eeeccCCcccc
Confidence 44444444443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.3e-09 Score=84.15 Aligned_cols=60 Identities=43% Similarity=0.656 Sum_probs=35.6
Q ss_pred ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcC
Q 047797 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 789 (927)
+|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 345666666666555555566666666666666666655555566666666666666553
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=2.8e-09 Score=127.60 Aligned_cols=110 Identities=32% Similarity=0.372 Sum_probs=74.9
Q ss_pred cccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCC
Q 047797 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLS 188 (927)
Q Consensus 109 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~ 188 (927)
.|..++.|++|||++|.-.+. +|..++.|-+||||+++++.+. .+|..+++|..|++||+..+...... ......++
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~ 642 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ 642 (889)
T ss_pred HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcc
Confidence 366788888888888654443 8888888888888888888766 78888888888888888766543332 23344577
Q ss_pred CCcEEECCCccCCCCCchHHhhcCCCCCCEEEc
Q 047797 189 SLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221 (927)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 221 (927)
+||+|.+..............+.++.+|+.+..
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 888887776654333333444455555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.9e-09 Score=83.56 Aligned_cols=61 Identities=41% Similarity=0.566 Sum_probs=57.8
Q ss_pred cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcC
Q 047797 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813 (927)
Q Consensus 753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 813 (927)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988888999999999999999999999899999999999999999985
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-10 Score=114.07 Aligned_cols=181 Identities=27% Similarity=0.249 Sum_probs=114.6
Q ss_pred CCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCccc-ccCCCCCcEE
Q 047797 115 GLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLER-LSHLSSLRHL 193 (927)
Q Consensus 115 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~-l~~l~~L~~L 193 (927)
.|++||||...++..++-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.++.++...+.. +..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588999998888765555667888999999999999988888888888999999998888766554432 4566666666
Q ss_pred ECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCC--CCCCCcchhHhhcccCccE
Q 047797 194 DLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNH--LPSSSVYPWLFNLSRNILH 271 (927)
Q Consensus 194 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~l~~~~~~L~~ 271 (927)
+++++.+.... .. ..+....++|+.|++++.. +.. .-.+.+..-+++|.+
T Consensus 266 NlsWc~l~~~~--Vt-------------------------v~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 266 NLSWCFLFTEK--VT-------------------------VAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVH 317 (419)
T ss_pred CchHhhccchh--hh-------------------------HHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceee
Confidence 66666554421 11 1112222455555555542 111 122333444446777
Q ss_pred EEccCCc-CcCCcchhhhcCCCCCEEEccCCcCCCcCccc---ccCCCCCcEEeCCCC
Q 047797 272 LDLGFNH-LQGSIPEAFQHMVSLRLLSLASNELEGGIPKF---FGNMCSLNQLYLPRN 325 (927)
Q Consensus 272 L~Ls~n~-i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n 325 (927)
|||++|. ++......|.+++.|++|.++.|.. ++|.. +...|.|.+|++.++
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 7776654 3333344566677777777777643 34443 356677888877765
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.75 E-value=9.3e-09 Score=73.51 Aligned_cols=41 Identities=51% Similarity=0.995 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhhcCc-CCCCCcCCCCCCCC-CCCCccccceeec
Q 047797 36 IDEEREALLTFKQSLV-DEYGVLSSWGSEDG-KRDCCKWRGVRCS 78 (927)
Q Consensus 36 ~~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~ 78 (927)
.++|++||++||+++. +|.+.+.+|+. . ..+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 3689999999999998 57789999984 3 2799999999995
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.6e-09 Score=121.94 Aligned_cols=223 Identities=25% Similarity=0.262 Sum_probs=130.5
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
..+++.|++.+|+|..+...+..+++|++|++++|.|+... .+..++.|+.|++++|.|... ..+..++.|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 34556666666666665444555666666666666666442 244555566666666666532 23444566666666
Q ss_pred CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797 614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693 (927)
Q Consensus 614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 693 (927)
++|++...-+... ..+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+. .
T Consensus 170 ~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l-----~-------------- 227 (414)
T KOG0531|consen 170 SYNRIVDIENDEL-SELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL-----N-------------- 227 (414)
T ss_pred Ccchhhhhhhhhh-hhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc-----c--------------
Confidence 6666632222001 1455666666666665422 1222333333445555555421110 0
Q ss_pred ccccccccccceeeeecceeEEeeeccccccccccc--ceeEEEccCCcccccCccccccccCCCEEecccccccccCCc
Q 047797 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG--FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP 771 (927)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 771 (927)
.+. +|+.+++++|++.. ++..+..+..+..|++++|++... .
T Consensus 228 ---------------------------------~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~ 271 (414)
T KOG0531|consen 228 ---------------------------------ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--E 271 (414)
T ss_pred ---------------------------------cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--c
Confidence 011 25788888888854 335667788888899999988866 5
Q ss_pred cccCCCCCCeEeCCCCcCccc---CCcc-ccCCCCCCeEeCcCCcCcccCC
Q 047797 772 KIGQLKSLDFLDLSRNHFSGN---IPSS-LSLLSGLSVLDLSYNSLSGKIP 818 (927)
Q Consensus 772 ~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p 818 (927)
.+...+.+..+..+.|.+... .... ....+.++.+.+.+|+.....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 566677888888888887632 2221 4456778888888888876554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.4e-09 Score=122.19 Aligned_cols=216 Identities=29% Similarity=0.316 Sum_probs=139.1
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
..++.+.+..|.+..+-..+..+++|+.|++.+|.|..+. ..+..+++|++|++++|.|+...+ +..++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheec
Confidence 3455555666666664445667778888888888877442 225667788888888888775433 5566667888888
Q ss_pred CCcCCCCCChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693 (927)
Q Consensus 615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 693 (927)
+|.|. .++. +. .+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+..... +..
T Consensus 149 ~N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~---------------- 206 (414)
T KOG0531|consen 149 GNLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDL---------------- 206 (414)
T ss_pred cCcch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHH----------------
Confidence 88773 3332 22 36777777777777764433 2 4566777777777777652211 110
Q ss_pred ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC--CCEEecccccccccCCc
Q 047797 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG--LTALNLSRNNLTGLIPP 771 (927)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~ 771 (927)
+..+..+++..|.++..-+ +..+.. |+.+++++|.+.. ++.
T Consensus 207 ----------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~ 249 (414)
T KOG0531|consen 207 ----------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPE 249 (414)
T ss_pred ----------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccc
Confidence 1122445777888765433 223333 8889999998873 345
Q ss_pred cccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797 772 KIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 772 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 814 (927)
.+..+..+..||+++|+++.. ..+...+.+..+....|++.
T Consensus 250 ~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 677788889999999988754 23455566777777777765
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1.2e-08 Score=122.43 Aligned_cols=107 Identities=28% Similarity=0.367 Sum_probs=80.6
Q ss_pred CCCCeeeCCCCC--CCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797 114 RGLRHLDLSKND--FGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191 (927)
Q Consensus 114 ~~L~~L~Ls~n~--~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~ 191 (927)
+.|++|=+.+|. +... -+.+|..++.|++|||++|.-.+.+|..+++|.+||+|++++..+...+ ..+.+|+.|.
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP--~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP--SGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc--hHHHHHHhhh
Confidence 368888888885 4442 3456888999999999999888899999999999999999888764332 4577888888
Q ss_pred EEECCCccCCCCCchHHhhcCCCCCCEEEcCCCC
Q 047797 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY 225 (927)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 225 (927)
+|++..+..... ++.....+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eecccccccccc--ccchhhhcccccEEEeeccc
Confidence 888887654432 24455567888888776654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.6e-10 Score=108.97 Aligned_cols=159 Identities=20% Similarity=0.207 Sum_probs=102.4
Q ss_pred CCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCC-CCCCCCchhhcccccc
Q 047797 163 SGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY-LPPINPSFIWLFNLST 241 (927)
Q Consensus 163 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~~~~ 241 (927)
+.||++|||...+....-...++.|++|+.|.+.++++.+ ++...+.+-.+|+.|+++.|. ++.... .-+...++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENAL--QLLLSSCS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHH--HHHHHhhh
Confidence 3588888877666443333457888999999999999887 678889999999999999884 443322 22333348
Q ss_pred CccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCc---CCcchhhhcCCCCCEEEccCCc-CCCcCcccccCCCCC
Q 047797 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ---GSIPEAFQHMVSLRLLSLASNE-LEGGIPKFFGNMCSL 317 (927)
Q Consensus 242 ~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~---~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L 317 (927)
.|..|+++++.++...+...+....++|+.|+++++.-. ..+..-...+++|.+|||++|. ++...-..|.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 899999999887652333345566668888888886421 1222223466777777776653 222222334455555
Q ss_pred cEEeCCCC
Q 047797 318 NQLYLPRN 325 (927)
Q Consensus 318 ~~L~L~~n 325 (927)
++|.++.|
T Consensus 341 ~~lSlsRC 348 (419)
T KOG2120|consen 341 QHLSLSRC 348 (419)
T ss_pred eeeehhhh
Confidence 55555554
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.8e-09 Score=102.74 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=121.2
Q ss_pred CCCCCCcEEecCCCCccCCCCccccc-CCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccc
Q 047797 160 RDLSGFEYFNVENSNLFSVGSLERLS-HLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFN 238 (927)
Q Consensus 160 ~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 238 (927)
+.+..++.|.+.++.+-..+....++ .++.++.+||.+|.+++.+++...+.++|.|+.|+++.|.+...+...+ ..
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p 119 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LP 119 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cc
Confidence 33344555666666665555555554 6788999999999999988888889999999999999998876654211 23
Q ss_pred cccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcc--cccCCCC
Q 047797 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK--FFGNMCS 316 (927)
Q Consensus 239 ~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~ 316 (927)
. .+|++|-|.+..+.-......+..++ .+++|.++.|++. .+++..+.+....|. .+...+.
T Consensus 120 ~-~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS~N~~r--------------q~n~Dd~c~e~~s~~v~tlh~~~c 183 (418)
T KOG2982|consen 120 L-KNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMSDNSLR--------------QLNLDDNCIEDWSTEVLTLHQLPC 183 (418)
T ss_pred c-cceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhccchhh--------------hhccccccccccchhhhhhhcCCc
Confidence 3 67777777777664312222233333 5666666665332 222222222211110 0111122
Q ss_pred CcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC--CCCCCCCCEEEccCCcCCCc-chhhhhccCC
Q 047797 317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGT-INKSLSHLFK 393 (927)
Q Consensus 317 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~ 393 (927)
+..+..+-|++... ++++..+.+..|.+...... ...++.+.-|+|+.|+|..- .-+.+.++++
T Consensus 184 ~~~~w~~~~~l~r~-------------Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRI-------------FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQ 250 (418)
T ss_pred HHHHHHHHHhHHhh-------------cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCch
Confidence 22222222222221 22666666666665543333 55566666777777776531 1234566677
Q ss_pred CCEEecCCcccc
Q 047797 394 LETLSLDGNSFT 405 (927)
Q Consensus 394 L~~L~L~~n~l~ 405 (927)
|..|.++++.+.
T Consensus 251 l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 251 LVDLRVSENPLS 262 (418)
T ss_pred hheeeccCCccc
Confidence 777777777665
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1.1e-09 Score=120.35 Aligned_cols=199 Identities=29% Similarity=0.255 Sum_probs=131.5
Q ss_pred CCCCCEEEccCccccccC-CCcccccCcccEEEcccccccccCCccccCC-CCCCEEecCCCcC----------CCCCCh
Q 047797 557 FNSLSILNLANNRFSGKI-PDSMGFLHNIQTLSLRNNRLNGELPSSLKNC-SKLRVLDLRKNAL----------FGEVPT 624 (927)
Q Consensus 557 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l----------~~~~p~ 624 (927)
+++++.|.+-.-.-.+.. |-.+..+.+|+.|.+.++.+.. ...+..+ ..|+.|-- +|.+ .|.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 344555544433322222 4456677899999999998863 1112111 12333321 1211 122222
Q ss_pred hhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccc
Q 047797 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704 (927)
Q Consensus 625 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 704 (927)
.. ....|.+.+.++|.+. ....++.-++.|+.|||++|+++..- .+
T Consensus 160 s~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~L----------------------------- 205 (1096)
T KOG1859|consen 160 SP--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NL----------------------------- 205 (1096)
T ss_pred ch--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HH-----------------------------
Confidence 22 1346788888889887 55567888899999999999987321 11
Q ss_pred eeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeC
Q 047797 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDL 784 (927)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 784 (927)
.-++.|++|||++|.+....--...++. |+.|+|++|.++.. ..+.++.+|+.||+
T Consensus 206 ---------------------r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 206 ---------------------RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDL 261 (1096)
T ss_pred ---------------------Hhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccch
Confidence 2345679999999999765443444455 99999999999977 67899999999999
Q ss_pred CCCcCcccCC-ccccCCCCCCeEeCcCCcCccc
Q 047797 785 SRNHFSGNIP-SSLSLLSGLSVLDLSYNSLSGK 816 (927)
Q Consensus 785 s~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~ 816 (927)
++|-|++.-. ..+..|..|+.|+|.+||+.|.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999986432 2245667899999999999875
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=1.1e-08 Score=112.65 Aligned_cols=196 Identities=23% Similarity=0.260 Sum_probs=99.0
Q ss_pred CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-------------CC
Q 047797 187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-------------HL 253 (927)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-------------~l 253 (927)
+++++.|.+-...-.+... |-.+..+.+|++|.+.+|.+..... +..+-..|++|.-++. .+
T Consensus 83 lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G----L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG----LQELRHQLEKLICHNSLDALRHVFASCGGDI 157 (1096)
T ss_pred HhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh----hHHHHHhhhhhhhhccHHHHHHHHHHhcccc
Confidence 4555555554444333211 4456667777777777777655221 2222234444433221 01
Q ss_pred CCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhH
Q 047797 254 PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSE 333 (927)
Q Consensus 254 ~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 333 (927)
+ .-|.|. .|...+.++|.+. .+.+++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+....--
T Consensus 158 ~--ns~~Wn-----~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l 227 (1096)
T KOG1859|consen 158 S--NSPVWN-----KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQL 227 (1096)
T ss_pred c--cchhhh-----hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcccccc
Confidence 0 112221 4556666666665 4555666666677777777766643 3566666677777776665522111
Q ss_pred HHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcc-hhhhhccCCCCEEecCCcccc
Q 047797 334 LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTI-NKSLSHLFKLETLSLDGNSFT 405 (927)
Q Consensus 334 ~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 405 (927)
....+ .|+.|.+++|.++. .-.+.++.+|+.||+++|-+.+-- -..+..+..|+.|+|.+|.+-
T Consensus 228 ~~~gc-------~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 SMVGC-------KLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhhh-------hheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 11111 45666666665542 222455556666666666554321 112334455556666666553
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=3.1e-08 Score=86.90 Aligned_cols=87 Identities=29% Similarity=0.387 Sum_probs=55.6
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 811 (927)
+.|++++|+|++ +|.++..++.|+.|+++.|.+.. .|..+..+.++-.||..+|.+. ++|-.+-.-+.....+++++
T Consensus 80 t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 667777777754 55567777777777777777763 3555666777777777777766 44444322233444556777
Q ss_pred cCcccCCCCC
Q 047797 812 SLSGKIPLGT 821 (927)
Q Consensus 812 ~l~~~~p~~~ 821 (927)
+|.+.+|...
T Consensus 157 pl~~~~~~kl 166 (177)
T KOG4579|consen 157 PLGDETKKKL 166 (177)
T ss_pred cccccCcccc
Confidence 7777776543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=8.4e-08 Score=95.18 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=40.1
Q ss_pred ccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCC
Q 047797 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNM 314 (927)
Q Consensus 236 l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l 314 (927)
++..++.++.+||.+|.++...-...+....|.|+.|+++.|.+...+...=....+|++|-|.+..+.-.. ...+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 333445566666666655432222222222235555555555554322111123445555555555443211 1223445
Q ss_pred CCCcEEeCCCC
Q 047797 315 CSLNQLYLPRN 325 (927)
Q Consensus 315 ~~L~~L~L~~n 325 (927)
|.++.|.++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 55555555555
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=8.5e-08 Score=99.80 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=92.7
Q ss_pred CCCCeeeCCCCC-CCCCCCCccccCCCCCCEEECCCCCC-CCCCCccC-CCCCCCcEEecCCCCccCCCCcccc-cCCCC
Q 047797 114 RGLRHLDLSKND-FGGSPVPEFIGSLSKLRYLNLSCGTP-SSKIPHPF-RDLSGFEYFNVENSNLFSVGSLERL-SHLSS 189 (927)
Q Consensus 114 ~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~n~~-~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~~l-~~l~~ 189 (927)
..||.|.++++. ....++..+..+++++++|++.+|.. ++..-..+ ..+++|++|++..|..++...+..+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778887774 22233455667788888888877752 22222233 4577778887766555554444432 36777
Q ss_pred CcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHhhcccC
Q 047797 190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLFNLSRN 268 (927)
Q Consensus 190 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~~~~~~ 268 (927)
|++|+++++.-.....+-....++..++.+.+++|.-.+... +......+..+..+++..+ .+++ ...-.+......
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-l~~~~~~~~~i~~lnl~~c~~lTD-~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-LLKAAAYCLEILKLNLQHCNQLTD-EDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH-HHHHhccChHhhccchhhhccccc-hHHHHHhhhhhH
Confidence 777777776543333333444555556666555543211111 0111122233444554443 2222 111122333335
Q ss_pred ccEEEccCCcCcCC-cchhh-hcCCCCCEEEccCCc
Q 047797 269 ILHLDLGFNHLQGS-IPEAF-QHMVSLRLLSLASNE 302 (927)
Q Consensus 269 L~~L~Ls~n~i~~~-~~~~l-~~l~~L~~L~Ls~n~ 302 (927)
|+.|+.+++...+. .-.++ .++.+|++|.++.++
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 56666655543211 11122 245555666555553
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=6.9e-08 Score=100.44 Aligned_cols=309 Identities=19% Similarity=0.122 Sum_probs=187.6
Q ss_pred CCEEEEECCCCchhhhhcccccc--ccCccccCCCCCCeeeCCCCC-CCCCCCCccccCCCCCCEEECCCCC-CCCCCCc
Q 047797 82 GHVKVLNLQTSDHEFARRKFLKG--KISPALLKLRGLRHLDLSKND-FGGSPVPEFIGSLSKLRYLNLSCGT-PSSKIPH 157 (927)
Q Consensus 82 ~~v~~L~L~~~~~~~~~~~~l~g--~~~~~l~~l~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~n~-~~~~~p~ 157 (927)
|+.++++++|. .-.| .+-....+++++++|++.++. ++....-..-..+++|++|++..|. ++...-.
T Consensus 138 g~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ccccccccccc--------ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 56677777762 1111 122345788999999999885 3333222334578999999999854 3332222
Q ss_pred -cCCCCCCCcEEecCCCCccCCCCccc-ccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCC-CCCCCCchh
Q 047797 158 -PFRDLSGFEYFNVENSNLFSVGSLER-LSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY-LPPINPSFI 234 (927)
Q Consensus 158 -~l~~l~~L~~L~Ls~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~ 234 (927)
-...+++|.+++++.+.-++...+.. ..++.+++.+.+.++.-...+.+...-+.+..+.++++..|. +++..- .
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~ 287 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--W 287 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--H
Confidence 23568999999999998877766654 567888888888876655544555555667788888888874 333322 2
Q ss_pred hccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcC-cCCcchhhh-cCCCCCEEEccCCcCCCc--Cccc
Q 047797 235 WLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHL-QGSIPEAFQ-HMVSLRLLSLASNELEGG--IPKF 310 (927)
Q Consensus 235 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~--~p~~ 310 (927)
.+...+..|+.|+.+++.-.+......+.+...+|+.+.++.++- +..-...++ +++.|+.+++..+..... +...
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 344445889999999875433255566777777999999999873 322222232 578888888888754311 1222
Q ss_pred ccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCC-Ccchhhhh
Q 047797 311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLN-GTINKSLS 389 (927)
Q Consensus 311 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~ 389 (927)
-.+++.|+.|.++++..... +.+..+.. + -..+..|+.+.|+++... ...-..+.
T Consensus 368 s~~C~~lr~lslshce~itD--~gi~~l~~------------~----------~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITD--EGIRHLSS------------S----------SCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred ccCCchhccCChhhhhhhhh--hhhhhhhh------------c----------cccccccceeeecCCCCchHHHHHHHh
Confidence 24667788888877643211 11111110 0 112335666666666543 22334456
Q ss_pred ccCCCCEEecCCcccccc-cChhhhhcCCCCCEEEc
Q 047797 390 HLFKLETLSLDGNSFTGV-ISETFFSNMSNLQMLFL 424 (927)
Q Consensus 390 ~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L 424 (927)
.+++|+.+++.+++-... .-..+-.++|++++..+
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 677777777777653211 11223456666665543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=5.5e-06 Score=81.52 Aligned_cols=66 Identities=21% Similarity=0.084 Sum_probs=34.1
Q ss_pred CCCCCCEEEccCCcCCCcc----hhhhhccCCCCEEecCCcccccccChhhhh-----cCCCCCEEEccCCccee
Q 047797 366 RFLSLKVLKLGENHLNGTI----NKSLSHLFKLETLSLDGNSFTGVISETFFS-----NMSNLQMLFLADNSLTL 431 (927)
Q Consensus 366 ~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~l~~L~~L~L~~n~l~~ 431 (927)
.+.+|++||+.+|.++..- ...+...+.|++|.+.+|-++..-....+. ..++|..|...+|...+
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 3456666666666665322 122334455666666666655333332222 24566666666665543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=3.5e-07 Score=80.41 Aligned_cols=133 Identities=24% Similarity=0.298 Sum_probs=77.8
Q ss_pred CceEeCcCCCCCCCCcccc---cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 537 STFLNLSKNKFSGLPDCWL---NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 537 L~~L~L~~n~l~~lp~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
+..++|++|++-.+++... ....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 3456666676665554433 3445666677777776433333333456777777777777 55666777777777777
Q ss_pred CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch
Q 047797 614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK 673 (927)
Q Consensus 614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 673 (927)
+.|++ ...|.-+. .+.++-.|+..+|.+. .+|..+..-+..-..++.++.+.+.-+.
T Consensus 108 ~~N~l-~~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 108 RFNPL-NAEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccCcc-ccchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 77777 45555555 3667777777777665 3333332222333334455555554443
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=9.1e-06 Score=80.01 Aligned_cols=102 Identities=25% Similarity=0.271 Sum_probs=59.1
Q ss_pred ccCCCCCCeeeCCCCCCCCCC---CCccccCCCCCCEEECCCCCCCC----CCCccCCCCCCCcEEecCCCCccCCCCcc
Q 047797 110 LLKLRGLRHLDLSKNDFGGSP---VPEFIGSLSKLRYLNLSCGTPSS----KIPHPFRDLSGFEYFNVENSNLFSVGSLE 182 (927)
Q Consensus 110 l~~l~~L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~ 182 (927)
+..+..+..+|||+|.|.... +...+.+-++|+..++|.-. +| .+|..+. --++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~------------------~Ll~ 86 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLV------------------MLLK 86 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHH------------------HHHH
Confidence 445778888899999886531 23345556777777776432 22 2222110 0013
Q ss_pred cccCCCCCcEEECCCccCCCC--CchHHhhcCCCCCCEEEcCCCCCCCCC
Q 047797 183 RLSHLSSLRHLDLSCINLTKS--SDWFQVVSQLHSLKTLVLRSCYLPPIN 230 (927)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~ 230 (927)
.+-+|++|+..+||.|.+... +.....++....|++|.|++|.+..+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 455667777777777766543 333445666677777777777665443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=8.2e-06 Score=95.71 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=76.5
Q ss_pred CCCCeeeCCCCCCCCCCCCccc-cCCCCCCEEECCCCCCCCC-CCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797 114 RGLRHLDLSKNDFGGSPVPEFI-GSLSKLRYLNLSCGTPSSK-IPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191 (927)
Q Consensus 114 ~~L~~L~Ls~n~~~~~~lp~~l-~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~ 191 (927)
.+|++||++|...-...=|..+ ..||.|+.|.+++-.+... .-....++++|..||+|+.++... ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 4677777777543222122223 3467777777776555432 223345677777778777776433 5567777777
Q ss_pred EEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCc---hhhccccccCccEEEcCCCCCCC
Q 047797 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS---FIWLFNLSTSIETLDLSDNHLPS 255 (927)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~l~~~~~~L~~L~Ls~n~l~~ 255 (927)
+|.+.+-.+....+ ...+-++++|+.||+|.........- ..+.+..+|+|+.||.|++.+..
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77777766665433 33455566666666666543332210 01111223556666666555543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=5.1e-05 Score=71.88 Aligned_cols=59 Identities=27% Similarity=0.238 Sum_probs=35.4
Q ss_pred CccEEEccCCCCc--ccCCCCCCCCCCCEEEccCCcCCCcc---hhhhhccCCCCEEecCCccc
Q 047797 346 SLEGLCLYANDIT--GPIPDLGRFLSLKVLKLGENHLNGTI---NKSLSHLFKLETLSLDGNSF 404 (927)
Q Consensus 346 ~L~~L~L~~n~l~--~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~l 404 (927)
+|+.|.|.+|.+. +.+..+..+|+|++|.+-+|.++..- ...+..+++|+.||+..-..
T Consensus 89 ~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 89 NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 4444444444443 23333667778888888777776321 12356788888888876544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=7.1e-05 Score=80.74 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=54.2
Q ss_pred ccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCC
Q 047797 578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657 (927)
Q Consensus 578 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 657 (927)
+..+.+++.|++++|.++ .+|. + .++|++|++++|.-...+|..+ .++|+.|++++|.....+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence 445688999999999887 4452 2 3469999999866556777644 3589999999884322444 357
Q ss_pred CEEEcccccc
Q 047797 658 QVLDLSLNNI 667 (927)
Q Consensus 658 ~~L~Ls~N~l 667 (927)
+.|+++.|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7788876654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=2e-05 Score=56.31 Aligned_cols=35 Identities=43% Similarity=0.733 Sum_probs=13.7
Q ss_pred CCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790 (927)
Q Consensus 755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 790 (927)
|++|++++|+|+. +|+.++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 4444444444442 2223444444444444444443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.4e-05 Score=54.62 Aligned_cols=39 Identities=36% Similarity=0.630 Sum_probs=32.5
Q ss_pred cceeEEEccCCcccccCccccccccCCCEEeccccccccc
Q 047797 729 GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768 (927)
Q Consensus 729 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 768 (927)
++|++|++++|+|+. +|..++++++|++|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 357999999999986 565799999999999999999854
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=5.6e-05 Score=88.82 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=43.2
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcC-CcchhhhcCCCCCEEEccCCcCCCcC------cccccC
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG-SIPEAFQHMVSLRLLSLASNELEGGI------PKFFGN 313 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~------p~~~~~ 313 (927)
++|..||+|+.+++. ...+.++. +|+.|.+.+=.+.. ..-..+.++++|++||+|........ -+.-..
T Consensus 173 pNL~sLDIS~TnI~n---l~GIS~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 173 PNLRSLDISGTNISN---LSGISRLK-NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred CccceeecCCCCccC---cHHHhccc-cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 455555555544422 13344444 45555444443332 11123445555555555544332111 012234
Q ss_pred CCCCcEEeCCCCCCCCchhHHHh
Q 047797 314 MCSLNQLYLPRNKLSGQLSELIQ 336 (927)
Q Consensus 314 l~~L~~L~L~~n~l~~~~~~~l~ 336 (927)
+|+|+.||.+++.+....-+.+-
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred CccccEEecCCcchhHHHHHHHH
Confidence 67777777777766655544433
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.59 E-value=4.5e-05 Score=75.63 Aligned_cols=116 Identities=23% Similarity=0.236 Sum_probs=82.0
Q ss_pred ccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCC--CCCCCCCccCCCCCCCcEEecCCCCccCCCC
Q 047797 103 KGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCG--TPSSKIPHPFRDLSGFEYFNVENSNLFSVGS 180 (927)
Q Consensus 103 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~ 180 (927)
.|.+......+..|+.|++.+..++.. ..+-.+++|++|.+|.| +.++.++....++++|++|++++|++..+..
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 344555555666777777777666543 34556889999999999 6777777777778999999999999887777
Q ss_pred cccccCCCCCcEEECCCccCCCCCchH-HhhcCCCCCCEEEc
Q 047797 181 LERLSHLSSLRHLDLSCINLTKSSDWF-QVVSQLHSLKTLVL 221 (927)
Q Consensus 181 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~L 221 (927)
+..+..+.+|..|++..|..+...+-- ..+.-+++|++|+-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 778888888888888888776643222 23344555555544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00039 Score=75.14 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=20.8
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCc
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n 568 (927)
|.+|++|++++|....+|..+. .+|+.|+++.+
T Consensus 155 PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 155 SPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 4567777777766555554333 46777777665
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00014 Score=69.06 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEE
Q 047797 114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHL 193 (927)
Q Consensus 114 ~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L 193 (927)
.....+||++|.+... ..+..+++|.+|.|.+|+++..-|.--.-+++|+.|.|.+|++...+++..+..|+.|++|
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3566789999988653 4567788999999999998877666555677888888888888888777777778888888
Q ss_pred ECCCccCCCC
Q 047797 194 DLSCINLTKS 203 (927)
Q Consensus 194 ~Ls~n~l~~~ 203 (927)
.+-+|+.+..
T Consensus 119 tll~Npv~~k 128 (233)
T KOG1644|consen 119 TLLGNPVEHK 128 (233)
T ss_pred eecCCchhcc
Confidence 7777776653
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.06 E-value=0.0011 Score=61.01 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=46.0
Q ss_pred hhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-C
Q 047797 286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-L 364 (927)
Q Consensus 286 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l 364 (927)
.|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|..+. +++.+.+.. .+...... |
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-cccccccccc
Confidence 355555555555553 344344455555555555555543 3333333344433 455555543 22222222 5
Q ss_pred CCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCC
Q 047797 365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNL 419 (927)
Q Consensus 365 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 419 (927)
..+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 55666666666554 443444456665 677766655 222 3445556666555
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00088 Score=66.68 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCC
Q 047797 186 HLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLP 227 (927)
Q Consensus 186 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 227 (927)
.|++|+.|++|.|.......+......+|+|+++++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344555555555533222222223333344444444444443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0018 Score=59.67 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=57.4
Q ss_pred hhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhcc
Q 047797 260 PWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS 339 (927)
Q Consensus 260 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 339 (927)
+..+..+.+|+.+.+.. .+.......|..+++|+.+.+..+ +......+|.++++++.+.+.+ .+.......|..+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 33444444666666653 344444556777777777777664 5555556677776777777755 34333344555555
Q ss_pred CCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCC
Q 047797 340 SGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLE 395 (927)
Q Consensus 340 ~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 395 (927)
+|+.+++..+ +...... +.+. +|+.+.+.. .+.......|.++++|+
T Consensus 82 ------~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 ------NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ------TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ------cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7777777665 4433444 7776 888888876 45546666788877764
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.38 E-value=0.00068 Score=78.70 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=17.7
Q ss_pred CCEEEccCCcCCCc-chhhhhc-cCCCCEEecCCccc
Q 047797 370 LKVLKLGENHLNGT-INKSLSH-LFKLETLSLDGNSF 404 (927)
Q Consensus 370 L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l 404 (927)
++.|+++.+..... .-..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 66666666654321 1111111 55667777766654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00036 Score=69.31 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcc
Q 047797 187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS 266 (927)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~ 266 (927)
+.+.+.|++-++.+++ .....+++.|+.|.|+-|+++...| +..+ ++|++|+|..|.|.+..-...+.+++
T Consensus 18 l~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvNkIssL~p----l~rC-trLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVNKISSLAP----LQRC-TRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccH----HHHHHhcccceeEEeeccccccchh----HHHH-HHHHHHHHHhcccccHHHHHHHhcCc
Confidence 3445555555555554 2445556666666666666666544 3444 66666666666554322222233333
Q ss_pred cCccEEEccCCcCc
Q 047797 267 RNILHLDLGFNHLQ 280 (927)
Q Consensus 267 ~~L~~L~Ls~n~i~ 280 (927)
+|+.|.|..|...
T Consensus 89 -sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 -SLRTLWLDENPCC 101 (388)
T ss_pred -hhhhHhhccCCcc
Confidence 4455555444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.00019 Score=71.31 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=48.4
Q ss_pred CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcE
Q 047797 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRH 192 (927)
Q Consensus 113 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~ 192 (927)
+...+.|+.-++.++++ ....+++.|++|.||-|.++..-| +..|++|++|.|..|.+-++..+..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44566677777777664 234456777777777776654433 5556666666665555555555555555555555
Q ss_pred EECCCccC
Q 047797 193 LDLSCINL 200 (927)
Q Consensus 193 L~Ls~n~l 200 (927)
|-|..|.-
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 55555443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.22 E-value=0.0016 Score=75.56 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=63.1
Q ss_pred CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCC-CCCCCCC-chhhccccccCccEEEcCCCC-CCCCCcchhHh
Q 047797 187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSC-YLPPINP-SFIWLFNLSTSIETLDLSDNH-LPSSSVYPWLF 263 (927)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~l~ 263 (927)
++.|+.|.+..+.-............++.|+.|+++++ ......+ ....+...+++|+.|+++... +++ .....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence 45555555555433222223444555666666666552 1111111 001123333666666666665 443 3344444
Q ss_pred hcccCccEEEccCCc-CcCC-cchhhhcCCCCCEEEccCCcCCCc--CcccccCCCCCcEEeC
Q 047797 264 NLSRNILHLDLGFNH-LQGS-IPEAFQHMVSLRLLSLASNELEGG--IPKFFGNMCSLNQLYL 322 (927)
Q Consensus 264 ~~~~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L 322 (927)
..+++|++|.+.++. ++.. +-.....+++|++|+++++..... ......++++|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 444467777666555 3322 122234566677777776654311 1222334555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.0076 Score=35.72 Aligned_cols=12 Identities=67% Similarity=0.756 Sum_probs=5.3
Q ss_pred CCEEeccccccc
Q 047797 755 LTALNLSRNNLT 766 (927)
Q Consensus 755 L~~L~Ls~N~l~ 766 (927)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.0099 Score=35.23 Aligned_cols=12 Identities=58% Similarity=0.949 Sum_probs=5.9
Q ss_pred eeEEEccCCccc
Q 047797 731 VKYLDLSSNKLC 742 (927)
Q Consensus 731 L~~LdLs~N~l~ 742 (927)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344555555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.45 E-value=0.0021 Score=72.52 Aligned_cols=88 Identities=27% Similarity=0.331 Sum_probs=39.3
Q ss_pred CCCCCcEEeCCCCCCCCchhH----HHhhccCCCcCCCccEEEccCCCCccc-----CCCCCCC-CCCCEEEccCCcCCC
Q 047797 313 NMCSLNQLYLPRNKLSGQLSE----LIQNLSSGCTVNSLEGLCLYANDITGP-----IPDLGRF-LSLKVLKLGENHLNG 382 (927)
Q Consensus 313 ~l~~L~~L~L~~n~l~~~~~~----~l~~l~~~~~~~~L~~L~L~~n~l~~~-----~~~l~~l-~~L~~L~Ls~n~l~~ 382 (927)
...++++|.+.+|.++...-. .+...+ ..+..+++..|.+.+. .|.+..+ ..+++++++.|.++.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~-----~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGE-----SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccc-----hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 355666666666665532211 111111 0144455555554422 1112233 345555555555554
Q ss_pred cch----hhhhccCCCCEEecCCcccc
Q 047797 383 TIN----KSLSHLFKLETLSLDGNSFT 405 (927)
Q Consensus 383 ~~~----~~l~~l~~L~~L~L~~n~l~ 405 (927)
.-. ..+..++.++++.++.|.+.
T Consensus 277 ~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 277 KGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHhhhHHHHHhhcccCccc
Confidence 322 22334445555555555544
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.08 E-value=0.0018 Score=72.97 Aligned_cols=108 Identities=26% Similarity=0.282 Sum_probs=53.8
Q ss_pred CCEEEccCccccccCC----CcccccCcccEEEcccccccccCCc----cccCC-CCCCEEecCCCcCCCCC----Chhh
Q 047797 560 LSILNLANNRFSGKIP----DSMGFLHNIQTLSLRNNRLNGELPS----SLKNC-SKLRVLDLRKNALFGEV----PTCV 626 (927)
Q Consensus 560 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l-~~L~~L~Ls~N~l~~~~----p~~~ 626 (927)
+..+.+.+|.+..... ..+...+.|+.|++++|.+.+..-. .+... ..|++|++..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777764322 2344456677777777766632211 11121 34555666666654332 2223
Q ss_pred hhcCccCcEEEccCcccce----ecCcccc----CCCCCCEEEccccccc
Q 047797 627 GGSLQNLIILRLKSNNFHG----NIPFQLC----HLAFIQVLDLSLNNIS 668 (927)
Q Consensus 627 ~~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~Ls~N~l~ 668 (927)
. ....++.++++.|.+.. .++..+. ...++++|.+++|.++
T Consensus 169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 2 24555566666665521 1122222 2445555555555554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.20 E-value=0.015 Score=56.64 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=72.3
Q ss_pred cceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeC
Q 047797 729 GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDL 808 (927)
Q Consensus 729 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 808 (927)
...+.||++.|++.. .-..|+-++.|..|+++.|.+. ..|..+++...+..+++.+|..+ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 345889999999854 3456778889999999999998 56889999999999999999998 68999999999999999
Q ss_pred cCCcCc
Q 047797 809 SYNSLS 814 (927)
Q Consensus 809 s~N~l~ 814 (927)
-.|+|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999875
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.30 E-value=0.27 Score=26.92 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=4.5
Q ss_pred CceEeCcCCCCCC
Q 047797 537 STFLNLSKNKFSG 549 (927)
Q Consensus 537 L~~L~L~~n~l~~ 549 (927)
|+.|++++|+++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.52 E-value=0.5 Score=29.17 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=8.3
Q ss_pred CCCCeEeCCCCcCcc
Q 047797 777 KSLDFLDLSRNHFSG 791 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~~ 791 (927)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.52 E-value=0.5 Score=29.17 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=8.3
Q ss_pred CCCCeEeCCCCcCcc
Q 047797 777 KSLDFLDLSRNHFSG 791 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~~ 791 (927)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.16 E-value=0.48 Score=29.26 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=13.1
Q ss_pred ccCCCEEecccccccccCCccc
Q 047797 752 LVGLTALNLSRNNLTGLIPPKI 773 (927)
Q Consensus 752 l~~L~~L~Ls~N~l~~~~p~~l 773 (927)
+++|++|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777765543333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.16 E-value=0.48 Score=29.26 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=13.1
Q ss_pred ccCCCEEecccccccccCCccc
Q 047797 752 LVGLTALNLSRNNLTGLIPPKI 773 (927)
Q Consensus 752 l~~L~~L~Ls~N~l~~~~p~~l 773 (927)
+++|++|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777765543333
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=82.23 E-value=0.61 Score=61.89 Aligned_cols=46 Identities=26% Similarity=0.173 Sum_probs=38.4
Q ss_pred eCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcc
Q 047797 783 DLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNA 828 (927)
Q Consensus 783 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~ 828 (927)
||++|+|+...+..|..+++|+.|+|++|+|.|.|...+...|+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 6889999977778899999999999999999999997655555543
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.15 E-value=0.065 Score=52.39 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=47.8
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
..+.||++.|++..+-.-|.-++.+..|+++.|.+. ..|..++....+..+++.+|..+ ..|.++...+.++++++.+
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 345556666655554445555556666666666665 45555666666666666666555 4555666666666666666
Q ss_pred CcC
Q 047797 616 NAL 618 (927)
Q Consensus 616 N~l 618 (927)
|.+
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 654
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.38 E-value=0.48 Score=45.75 Aligned_cols=64 Identities=28% Similarity=0.310 Sum_probs=25.9
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHhhcccCccEEEcc
Q 047797 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLFNLSRNILHLDLG 275 (927)
Q Consensus 209 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~~~~~~L~~L~Ls 275 (927)
.+.+++.++.|.+.+|.--+... +..+++..++|+.|++++| +|++ .-..++..++ +|+.|.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk-nLr~L~l~ 184 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK-NLRRLHLY 184 (221)
T ss_pred HHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeech-hHHHHHHHhh-hhHHHHhc
Confidence 34444455555555543211110 0122223355666666655 2333 3333333333 44444433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.67 E-value=0.64 Score=28.05 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=7.3
Q ss_pred CCCCEEEccccccccc
Q 047797 655 AFIQVLDLSLNNISGK 670 (927)
Q Consensus 655 ~~L~~L~Ls~N~l~~~ 670 (927)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.48 E-value=0.37 Score=46.48 Aligned_cols=63 Identities=24% Similarity=0.219 Sum_probs=29.1
Q ss_pred ccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCc-CcCCcchhhhcCCCCCEEEcc
Q 047797 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNH-LQGSIPEAFQHMVSLRLLSLA 299 (927)
Q Consensus 236 l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~Ls 299 (927)
+.++ +.++.|.+.++.--+..-.+.+....++|+.|++++|. |+..--..+..+++|+.|.+.
T Consensus 121 L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 121 LRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred Hhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 3344 55566666555432212233344444455566665542 343333344445555555444
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.24 E-value=2.5 Score=26.04 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=12.6
Q ss_pred CCCceEeCcCCCCCCCCc
Q 047797 535 SNSTFLNLSKNKFSGLPD 552 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~ 552 (927)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.84 E-value=3.6 Score=25.47 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=8.8
Q ss_pred CCCCeEeCCCCcCc
Q 047797 777 KSLDFLDLSRNHFS 790 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~ 790 (927)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.42 E-value=20 Score=39.52 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCEEEccCccccccCC---CcccccCcccEEEcccccccc----cCCccccCCCCCCEEecCCCcC
Q 047797 560 LSILNLANNRFSGKIP---DSMGFLHNIQTLSLRNNRLNG----ELPSSLKNCSKLRVLDLRKNAL 618 (927)
Q Consensus 560 L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l 618 (927)
+..+.++.|......- .....-+.+..|++++|.... .+|...+.-..++....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 4455555555442111 122334556667777765542 3444444445566666665554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.75 E-value=32 Score=38.13 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=31.8
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhc--ccCccEEEccCCcCcC---CcchhhhcCCCCCEEEccCCcC
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNL--SRNILHLDLGFNHLQG---SIPEAFQHMVSLRLLSLASNEL 303 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~--~~~L~~L~Ls~n~i~~---~~~~~l~~l~~L~~L~Ls~n~l 303 (927)
..+.+++++.|.... .+|..+... ..-++.++.+...+.- .-+-.++.-++++..+++.|..
T Consensus 214 ~~lteldls~n~~Kd-dip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKD-DIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccccCCCCc-cchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 346677777776654 555432211 1145666666554431 1122234455677777766643
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.53 E-value=7.9 Score=24.40 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=8.0
Q ss_pred CCCCeEeCCCCcCc
Q 047797 777 KSLDFLDLSRNHFS 790 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~ 790 (927)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666654
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.91 E-value=10 Score=32.32 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=12.5
Q ss_pred CchhhHHHH-HHHHHHHHHHHhh
Q 047797 1 MSCKLFLLL-EYLALSSVILFQL 22 (927)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~ 22 (927)
|++|.|+|+ ++|+.++++...+
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 888877644 4444445544433
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.09 E-value=22 Score=40.22 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=44.6
Q ss_pred CCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC--CCCCCCcchhHh--hcccCccEEEccCCcCcCCcch--
Q 047797 212 QLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN--HLPSSSVYPWLF--NLSRNILHLDLGFNHLQGSIPE-- 285 (927)
Q Consensus 212 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~~l~--~~~~~L~~L~Ls~n~i~~~~~~-- 285 (927)
+.+.+..++|++|++.....- ..+....|+|+.|+|++| .+.. ..++. +.. .|++|.+.+|.+......
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~-sslsq~apklk~L~LS~N~~~~~~---~~el~K~k~l-~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDAL-SSLSQIAPKLKTLDLSHNHSKISS---ESELDKLKGL-PLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred CCcceeeeecccchhhchhhh-hHHHHhcchhheeecccchhhhcc---hhhhhhhcCC-CHHHeeecCCccccchhhhH
Confidence 455666666777766554332 334444577888888887 3321 12222 223 578888888877543211
Q ss_pred -hh----hcCCCCCEEE
Q 047797 286 -AF----QHMVSLRLLS 297 (927)
Q Consensus 286 -~l----~~l~~L~~L~ 297 (927)
.+ ..+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 11 2456776655
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.04 E-value=19 Score=40.58 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=22.0
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCC
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFN 277 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n 277 (927)
+.+..+.|++|++-.++-...+....|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 6666666777766444444445555556666666666
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.04 E-value=12 Score=22.95 Aligned_cols=6 Identities=0% Similarity=0.318 Sum_probs=2.2
Q ss_pred CcEEec
Q 047797 165 FEYFNV 170 (927)
Q Consensus 165 L~~L~L 170 (927)
|++|++
T Consensus 4 L~~L~l 9 (26)
T smart00367 4 LRELDL 9 (26)
T ss_pred CCEeCC
Confidence 333333
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=27.32 E-value=58 Score=30.00 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhhcccccchh
Q 047797 884 FFVGFWGVCGTLMLNRSWRYG 904 (927)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~ 904 (927)
+++.++.+++.+++.+|||.+
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHheeEEeecccC
Confidence 333333334444555666653
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.90 E-value=1.6e+02 Score=20.54 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.2
Q ss_pred EEEehh
Q 047797 876 FYVSLT 881 (927)
Q Consensus 876 ~~~~~~ 881 (927)
+.++++
T Consensus 13 Ia~~Vv 18 (40)
T PF08693_consen 13 IAVGVV 18 (40)
T ss_pred EEEEEE
Confidence 333333
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.32 E-value=41 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.9
Q ss_pred EccCCcccccCccccccccCCCEEeccccccc
Q 047797 735 DLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766 (927)
Q Consensus 735 dLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 766 (927)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999999775
Done!