Query 047797
Match_columns 927
No_of_seqs 889 out of 5545
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.9E-91 2E-95 848.5 46.2 707 34-849 8-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-70 1.1E-74 666.1 42.6 619 106-818 92-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-59 1.1E-63 564.4 50.0 537 210-826 69-635 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-57 1.5E-61 546.0 48.4 591 100-794 14-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-55 1.1E-59 539.3 40.2 558 113-851 23-593 (844)
6 3t6q_A CD180 antigen; protein- 100.0 6.3E-54 2.2E-58 511.3 42.3 532 105-826 26-572 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-53 7.7E-58 506.5 36.2 535 217-827 14-571 (606)
8 3t6q_A CD180 antigen; protein- 100.0 8E-52 2.7E-56 493.2 42.3 509 268-840 34-563 (606)
9 4eco_A Uncharacterized protein 100.0 3.3E-53 1.1E-57 504.1 24.5 80 35-126 27-117 (636)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-50 3.8E-55 499.0 40.1 522 245-842 8-565 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-50 5.2E-55 482.1 37.9 529 241-841 11-562 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 7.7E-50 2.6E-54 481.2 29.3 537 32-668 263-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 8.2E-49 2.8E-53 464.0 34.7 513 244-827 10-545 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-47 9.6E-52 448.4 28.1 492 241-821 5-517 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 2.1E-46 7.2E-51 443.3 33.1 495 188-795 28-536 (570)
16 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-45 8.3E-50 440.5 34.5 283 490-826 306-592 (635)
17 2z81_A CD282 antigen, TOLL-lik 100.0 6E-45 2E-49 428.6 35.1 490 69-672 3-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-45 4.8E-50 430.6 23.3 458 244-822 3-489 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 4.2E-44 1.4E-48 431.4 25.6 446 268-815 324-841 (876)
20 4eco_A Uncharacterized protein 100.0 4.1E-45 1.4E-49 434.4 16.1 320 415-816 247-602 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-42 1.5E-46 412.1 42.0 524 105-792 45-582 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-43 8.3E-48 411.6 26.6 461 217-794 3-485 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.6E-43 1.9E-47 411.9 21.0 488 268-848 32-546 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-40 5.9E-45 390.7 26.9 439 268-794 53-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.3E-39 1.5E-43 369.2 29.6 372 346-823 31-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 5.8E-40 2E-44 372.7 19.1 400 268-819 12-416 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 1.7E-39 5.9E-44 368.8 18.3 430 108-653 5-438 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 8.4E-40 2.9E-44 353.7 14.1 294 34-428 2-302 (313)
29 3v47_A TOLL-like receptor 5B a 100.0 1.8E-37 6.1E-42 355.8 32.8 378 243-672 12-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.1E-35 1.1E-39 334.1 30.4 197 102-329 30-226 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 1.6E-35 5.4E-40 341.5 23.3 239 552-841 122-360 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-35 1.8E-39 332.3 26.0 366 277-820 28-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 3.6E-34 1.2E-38 328.5 33.2 214 535-816 177-390 (466)
34 1o6v_A Internalin A; bacterial 100.0 8E-34 2.7E-38 325.5 35.1 123 537-669 223-345 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 3.2E-34 1.1E-38 310.0 21.4 258 535-846 50-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 1.1E-33 3.7E-38 326.1 22.8 214 554-819 148-361 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 2E-32 6.7E-37 306.7 25.9 332 392-840 45-377 (390)
38 3oja_B Anopheles plasmodium-re 100.0 3.4E-32 1.2E-36 321.6 26.2 334 391-841 50-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.3E-31 8E-36 297.9 26.8 308 268-670 46-354 (390)
40 4fmz_A Internalin; leucine ric 100.0 6E-30 2E-34 281.8 32.4 287 110-432 40-326 (347)
41 4fmz_A Internalin; leucine ric 100.0 1.8E-30 6E-35 286.1 28.1 307 364-814 40-346 (347)
42 3oja_B Anopheles plasmodium-re 100.0 8.9E-31 3E-35 309.4 27.1 308 268-670 52-360 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 7.1E-33 2.4E-37 318.1 2.0 134 537-670 201-356 (461)
44 4fcg_A Uncharacterized protein 100.0 2.9E-31 9.8E-36 288.5 13.6 282 33-357 22-313 (328)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-32 3.7E-37 316.6 -3.5 365 346-815 4-412 (461)
46 1xku_A Decorin; proteoglycan, 100.0 8.5E-29 2.9E-33 270.3 26.3 265 491-812 53-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-29 8.6E-34 274.7 21.9 199 558-812 123-331 (332)
48 2z66_A Variable lymphocyte rec 100.0 2E-29 6.7E-34 272.3 16.7 258 517-826 10-273 (306)
49 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-28 7E-33 267.4 23.8 152 242-431 34-186 (332)
50 3ogk_B Coronatine-insensitive 100.0 9E-31 3.1E-35 310.8 4.1 314 68-431 40-392 (592)
51 1xku_A Decorin; proteoglycan, 100.0 6.4E-28 2.2E-32 263.4 26.2 197 241-477 31-228 (330)
52 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4.2E-33 263.0 16.8 249 538-839 14-263 (285)
53 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.4E-32 272.8 25.6 253 515-820 55-309 (452)
54 4fcg_A Uncharacterized protein 100.0 4.4E-28 1.5E-32 263.4 19.8 226 535-814 81-314 (328)
55 3zyj_A Leucine-rich repeat-con 100.0 2.4E-27 8.1E-32 269.6 25.1 254 515-821 44-299 (440)
56 3ogk_B Coronatine-insensitive 100.0 1.3E-29 4.4E-34 300.8 4.7 235 535-815 270-527 (592)
57 2z80_A TOLL-like receptor 2, v 100.0 3.9E-28 1.3E-32 267.7 15.0 273 518-819 35-319 (353)
58 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-27 1.5E-31 250.8 17.6 252 517-820 14-267 (285)
59 2z66_A Variable lymphocyte rec 99.9 1.2E-26 4E-31 250.5 16.7 275 468-819 10-292 (306)
60 3zyi_A Leucine-rich repeat-con 99.9 1.4E-25 4.9E-30 255.8 23.9 251 536-841 55-307 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 2E-25 6.9E-30 253.6 24.5 250 536-840 44-295 (440)
62 2z62_A TOLL-like receptor 4, v 99.9 1.3E-25 4.4E-30 238.3 20.7 228 540-821 12-244 (276)
63 1wwl_A Monocyte differentiatio 99.9 6.8E-28 2.3E-32 260.4 3.2 224 536-815 64-310 (312)
64 2z80_A TOLL-like receptor 2, v 99.9 9.5E-26 3.2E-30 248.6 18.6 202 292-504 32-236 (353)
65 3g06_A SSPH2 (leucine-rich rep 99.9 9E-25 3.1E-29 255.0 22.5 287 55-435 10-302 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.9 3.2E-24 1.1E-28 250.3 26.6 262 466-819 41-302 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2E-26 7E-31 249.5 5.4 216 536-815 35-251 (317)
68 2p1m_B Transport inhibitor res 99.9 2.5E-27 8.7E-32 281.2 -1.9 404 212-666 103-542 (594)
69 2p1m_B Transport inhibitor res 99.9 1.2E-26 4.2E-31 275.3 4.0 133 288-427 102-245 (594)
70 1wwl_A Monocyte differentiatio 99.9 4.5E-26 1.5E-30 246.2 7.8 244 535-835 43-307 (312)
71 2o6q_A Variable lymphocyte rec 99.9 6E-24 2.1E-28 224.4 21.5 206 560-819 18-223 (270)
72 3oja_A Leucine-rich immune mol 99.9 8E-25 2.7E-29 250.8 15.5 218 534-816 33-252 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 5E-24 1.7E-28 226.0 20.4 226 519-793 12-240 (276)
74 3oja_A Leucine-rich immune mol 99.9 1.6E-25 5.3E-30 256.7 9.1 221 534-818 57-286 (487)
75 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-25 5.8E-30 242.2 5.8 266 295-649 14-281 (317)
76 1p9a_G Platelet glycoprotein I 99.9 1.7E-23 5.9E-28 222.7 18.9 208 554-819 6-213 (290)
77 2o6q_A Variable lymphocyte rec 99.9 6.1E-23 2.1E-27 216.7 21.3 205 536-793 17-221 (270)
78 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.1E-28 221.5 13.4 220 538-820 22-241 (272)
79 3rfs_A Internalin B, repeat mo 99.9 7.1E-23 2.4E-27 216.3 16.1 207 534-801 40-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 3.5E-22 1.2E-26 212.6 19.4 201 534-791 9-209 (290)
81 3m19_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 211.2 15.0 212 583-849 15-232 (251)
82 2xwt_C Thyrotropin receptor; s 99.9 2.2E-22 7.5E-27 208.3 14.6 86 533-618 29-117 (239)
83 4glp_A Monocyte differentiatio 99.9 6.1E-23 2.1E-27 221.4 10.5 227 536-815 65-308 (310)
84 3goz_A Leucine-rich repeat-con 99.9 1.4E-23 4.8E-28 231.7 5.1 237 534-816 21-299 (362)
85 2xwt_C Thyrotropin receptor; s 99.9 9.6E-22 3.3E-26 203.5 16.7 207 546-812 22-237 (239)
86 2ca6_A RAN GTPase-activating p 99.9 2.5E-23 8.5E-28 232.2 1.9 234 535-818 32-320 (386)
87 2ast_B S-phase kinase-associat 99.9 7.3E-23 2.5E-27 224.1 4.1 230 535-819 70-311 (336)
88 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 205.7 17.3 123 536-668 42-164 (308)
89 4glp_A Monocyte differentiatio 99.9 6.1E-22 2.1E-26 213.6 9.7 204 536-791 92-308 (310)
90 1h6u_A Internalin H; cell adhe 99.9 3.5E-21 1.2E-25 207.0 15.6 206 542-815 26-231 (308)
91 3goz_A Leucine-rich repeat-con 99.9 5.2E-22 1.8E-26 219.2 8.5 141 536-676 139-305 (362)
92 3m19_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 196.4 18.0 159 583-792 36-194 (251)
93 4ay9_X Follicle-stimulating ho 99.8 2.2E-20 7.5E-25 205.0 17.0 242 517-814 12-259 (350)
94 2ast_B S-phase kinase-associat 99.8 8.1E-21 2.8E-25 207.7 13.1 253 242-510 48-313 (336)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 8.3E-21 2.8E-25 193.1 11.4 164 609-826 14-178 (220)
96 2v9t_B SLIT homolog 2 protein 99.8 2.5E-20 8.7E-25 189.5 11.2 159 609-821 14-172 (220)
97 2ca6_A RAN GTPase-activating p 99.8 9.5E-21 3.2E-25 211.3 8.7 232 241-481 32-319 (386)
98 2o6s_A Variable lymphocyte rec 99.8 1.8E-19 6.2E-24 182.0 15.0 128 538-668 10-137 (208)
99 3cvr_A Invasion plasmid antige 99.8 1E-19 3.6E-24 209.5 14.9 43 756-799 210-252 (571)
100 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.6E-24 206.8 16.6 182 559-819 60-248 (571)
101 4ay9_X Follicle-stimulating ho 99.8 3.8E-19 1.3E-23 195.1 14.7 235 538-828 12-250 (350)
102 2o6s_A Variable lymphocyte rec 99.8 7.2E-19 2.4E-23 177.5 14.6 152 517-669 10-162 (208)
103 2xot_A Amphoterin-induced prot 99.8 3.8E-19 1.3E-23 195.9 11.3 162 608-819 41-207 (361)
104 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 177.7 15.0 157 608-819 21-177 (229)
105 1h6t_A Internalin B; cell adhe 99.8 3.9E-18 1.3E-22 181.5 15.0 171 580-815 44-214 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-18 1.7E-22 172.6 14.3 157 585-794 14-170 (220)
107 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 6E-23 184.2 11.5 186 540-791 29-214 (291)
108 1w8a_A SLIT protein; signaling 99.8 1.4E-18 4.9E-23 172.5 9.7 113 730-842 55-167 (192)
109 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.2E-22 194.7 16.8 171 534-768 42-212 (605)
110 1m9s_A Internalin B; cell inva 99.7 9.1E-18 3.1E-22 195.8 14.2 191 537-793 23-213 (605)
111 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.1E-22 183.9 13.9 130 538-670 21-151 (361)
112 1xeu_A Internalin C; cellular 99.7 7.4E-18 2.5E-22 176.3 9.2 171 580-816 17-187 (263)
113 1dce_A Protein (RAB geranylger 99.7 4.5E-20 1.5E-24 214.1 -8.5 190 556-819 347-551 (567)
114 2v9t_B SLIT homolog 2 protein 99.7 8.2E-17 2.8E-21 163.5 15.7 152 517-669 14-166 (220)
115 1dce_A Protein (RAB geranylger 99.7 9.6E-20 3.3E-24 211.3 -7.4 202 534-808 348-567 (567)
116 4ezg_A Putative uncharacterize 99.7 4.5E-17 1.5E-21 162.6 11.9 80 732-815 115-195 (197)
117 3e6j_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 161.5 17.1 155 516-672 21-176 (229)
118 4ezg_A Putative uncharacterize 99.7 8.4E-17 2.9E-21 160.6 12.6 154 579-791 41-195 (197)
119 1w8a_A SLIT protein; signaling 99.7 5.6E-17 1.9E-21 161.0 11.1 155 609-819 11-167 (192)
120 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.2E-22 172.9 7.9 122 536-668 20-141 (263)
121 2wfh_A SLIT homolog 2 protein 99.7 4E-17 1.4E-21 161.9 9.3 135 634-822 13-147 (193)
122 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5E-22 199.3 6.2 191 540-790 206-404 (727)
123 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.3E-22 199.1 6.0 221 536-818 174-408 (727)
124 3sb4_A Hypothetical leucine ri 99.6 3.6E-16 1.2E-20 169.8 11.4 74 732-807 253-327 (329)
125 3sb4_A Hypothetical leucine ri 99.6 1.2E-15 4.2E-20 165.6 11.3 261 346-661 50-327 (329)
126 2o6r_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 147.2 12.2 89 731-819 54-142 (177)
127 2ell_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 145.2 11.3 82 732-813 74-159 (168)
128 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.3E-20 146.6 9.2 138 605-796 23-165 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 2E-15 6.7E-20 143.2 8.0 79 731-809 66-148 (149)
130 3g39_A Variable lymphocyte rec 99.5 5.8E-15 2E-19 143.1 7.2 90 730-819 31-120 (170)
131 2o6r_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 137.8 13.4 133 537-672 9-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.5 6.4E-14 2.2E-18 138.7 14.2 127 539-669 14-140 (193)
133 2je0_A Acidic leucine-rich nuc 99.5 2.7E-14 9.4E-19 135.2 10.6 128 268-425 18-148 (149)
134 1ds9_A Outer arm dynein; leuci 99.5 7E-16 2.4E-20 154.0 -3.2 132 625-814 43-185 (198)
135 1ds9_A Outer arm dynein; leuci 99.5 1.5E-15 5.3E-20 151.5 -2.6 132 601-790 43-185 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.6E-18 134.5 10.2 131 534-669 18-154 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-13 5.6E-18 133.9 10.0 81 732-814 67-153 (176)
138 2r9u_A Variable lymphocyte rec 99.4 2.3E-13 7.7E-18 132.2 10.6 90 730-819 34-123 (174)
139 4fs7_A Uncharacterized protein 99.4 1.5E-12 5.3E-17 144.9 17.9 102 553-660 292-393 (394)
140 4fdw_A Leucine rich hypothetic 99.4 1.9E-12 6.4E-17 143.3 17.3 240 242-500 136-380 (401)
141 4fdw_A Leucine rich hypothetic 99.4 3.2E-12 1.1E-16 141.5 18.5 243 239-504 111-359 (401)
142 4fs7_A Uncharacterized protein 99.4 4.2E-12 1.4E-16 141.3 18.6 59 279-339 59-117 (394)
143 3g39_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 125.0 10.4 108 633-793 11-118 (170)
144 3un9_A NLR family member X1; l 99.3 8.1E-14 2.8E-18 152.8 -3.4 68 730-797 184-259 (372)
145 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 119.5 11.4 104 538-668 15-118 (174)
146 2ifg_A High affinity nerve gro 99.2 1.3E-11 4.4E-16 135.1 9.7 88 731-819 33-121 (347)
147 3un9_A NLR family member X1; l 99.2 4.2E-13 1.4E-17 147.1 -3.8 187 558-790 72-283 (372)
148 4gt6_A Cell surface protein; l 99.1 2E-09 6.8E-14 119.6 22.0 108 552-666 282-389 (394)
149 4gt6_A Cell surface protein; l 99.1 2.3E-09 7.7E-14 119.2 20.7 75 732-811 314-388 (394)
150 2ifg_A High affinity nerve gro 99.1 5.7E-11 1.9E-15 129.8 7.1 66 610-678 12-79 (347)
151 4h09_A Hypothetical leucine ri 98.8 1.7E-07 5.7E-12 103.5 20.9 67 732-800 289-355 (379)
152 4h09_A Hypothetical leucine ri 98.8 2.2E-07 7.6E-12 102.5 21.9 59 364-427 65-123 (379)
153 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.4E-14 116.4 5.1 164 600-812 166-341 (362)
154 2ra8_A Uncharacterized protein 98.6 1.4E-07 4.9E-12 102.1 12.0 139 283-430 164-320 (362)
155 3rw6_A Nuclear RNA export fact 98.3 4.2E-07 1.4E-11 93.1 4.8 65 728-794 169-237 (267)
156 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.3E-12 95.8 1.7 84 734-819 148-238 (267)
157 1io0_A Tropomodulin; LRR prote 98.2 9.5E-07 3.2E-11 86.1 5.4 44 286-329 31-79 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 5.8E-07 2E-11 87.6 3.2 61 268-328 94-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.1E-11 80.6 1.7 83 140-224 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.6E-10 75.8 2.4 85 582-666 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 8.9E-05 3E-09 67.0 6.5 66 757-824 12-78 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00031 1.1E-08 67.7 1.2 113 556-668 39-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0033 1.1E-07 60.6 7.3 37 368-404 126-169 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0032 1.1E-07 56.6 6.0 57 732-790 11-68 (130)
165 2lz0_A Uncharacterized protein 41.0 22 0.00076 29.5 3.7 39 575-614 13-51 (100)
166 2lz0_A Uncharacterized protein 37.9 31 0.001 28.6 4.1 47 278-325 7-53 (100)
167 2l9u_A Receptor tyrosine-prote 24.8 28 0.00097 21.9 1.1 22 880-901 12-33 (40)
168 3ox7_P MH027; urokinase-type p 21.6 31 0.001 18.8 0.7 11 66-76 4-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-91 Score=848.50 Aligned_cols=707 Identities=30% Similarity=0.444 Sum_probs=493.4
Q ss_pred CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCccccceeecCCCCCEEEEECCCCchhhhhccccccc---cCccc
Q 047797 34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGK---ISPAL 110 (927)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~---~~~~l 110 (927)
.+.++|++||++||+++.||. .+++|+ .+++||+|+||+|+ .++|++|+|++ ..+.|. +|+++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~--------~~l~g~~~~l~~~l 73 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS--------KPLNVGFSAVSSSL 73 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT--------SCCCEEHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC--------CCcCCccCccChhH
Confidence 446889999999999999998 999997 47899999999997 68999999999 789998 99999
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCc--cCCCCCCCcEEecCCCCccCCCCcccccCCC
Q 047797 111 LKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH--PFRDLSGFEYFNVENSNLFSVGSLERLSHLS 188 (927)
Q Consensus 111 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~ 188 (927)
.++++|+.++++.+.+.. +|..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+........+.+++
T Consensus 74 ~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred hccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 999999999999998754 678999999999999999999999998 9999999999999998875444334457889
Q ss_pred CCcEEECCCccCCCCCchHHh---hcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhc
Q 047797 189 SLRHLDLSCINLTKSSDWFQV---VSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNL 265 (927)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~ 265 (927)
+|++|++++|.+++. .+.. +.++++|++|++++|.+++..+ ...+ ++|++|++++|.+++ .+|. +.++
T Consensus 152 ~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l-~~L~~L~Ls~n~l~~-~~~~-l~~l 222 (768)
T 3rgz_A 152 SLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD----VSRC-VNLEFLDVSSNNFST-GIPF-LGDC 222 (768)
T ss_dssp TCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB----CTTC-TTCCEEECCSSCCCS-CCCB-CTTC
T ss_pred CCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC----cccC-CcCCEEECcCCcCCC-CCcc-cccC
Confidence 999999999988763 2233 6778888888888887776554 2444 667777777776655 4444 4444
Q ss_pred ccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCC
Q 047797 266 SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN 345 (927)
Q Consensus 266 ~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~ 345 (927)
. +|++|++++|.+++.+|..++.+++|++|++++|++++.+|.. .+++|++|++++|.+++.+|..+...
T Consensus 223 ~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~------- 292 (768)
T 3rgz_A 223 S-ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA------- 292 (768)
T ss_dssp C-SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT-------
T ss_pred C-CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh-------
Confidence 4 6666666666666666666666666666666666666555543 45555555555555554444433322
Q ss_pred CccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEcc
Q 047797 346 SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA 425 (927)
Q Consensus 346 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 425 (927)
+++|++|++++|.+++.+|..++++++|++|++++|++++.+|...+..+++|++|+++
T Consensus 293 ---------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 293 ---------------------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp ---------------------CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred ---------------------cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 24455555555555444444455555555555555555444444444455555555555
Q ss_pred CCcceecccCCccccc-ccceeecccccCCCCCChhhhc--CccccEEEccCCccCCCccchHHhhccccceeecccccc
Q 047797 426 DNSLTLKLSHDWVPAF-QLKWLSLASCKMGPHFPNWLQT--QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI 502 (927)
Q Consensus 426 ~n~l~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 502 (927)
+|++++..+..+..+. +|++|++++|.+.+..|..+.. +++|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcc
Confidence 5555444444444443 4555555555544444444443 4555555555555555555544332 3555555555555
Q ss_pred cCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcc
Q 047797 503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSM 578 (927)
Q Consensus 503 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 578 (927)
++.+|..+..+++|+.+++++|.+.+.+|.. +++|++|++++|++++ +|..+.++++|++|++++|++++.+|..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 5555555555555555555555554444432 3456666666666665 66666677777777777777777777777
Q ss_pred cccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCc-----------------
Q 047797 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN----------------- 641 (927)
Q Consensus 579 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n----------------- 641 (927)
+.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++ ....+..+++..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhhhccccccccccccccccccccc
Confidence 7777777777777777777777777777777777777777777776665 3444433333221
Q ss_pred -----ccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEe
Q 047797 642 -----NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT 716 (927)
Q Consensus 642 -----~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (927)
.+.+..+..+..++.++.++++.|.++|.+|..+
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~----------------------------------------- 628 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF----------------------------------------- 628 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC-----------------------------------------
T ss_pred cccccccccccchhhhccccccccccccceecccCchhh-----------------------------------------
Confidence 1122223333333344444444444444444433
Q ss_pred eecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcc
Q 047797 717 WKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS 796 (927)
Q Consensus 717 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 796 (927)
..++.|+.|||++|+++|.+|..|+++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..
T Consensus 629 ---------~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 629 ---------DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp ---------SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ---------hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 44556699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCCCCCCCCC
Q 047797 797 LSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADE 849 (927)
Q Consensus 797 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C~~~ 849 (927)
++.+++|++||+++|+++|.||..+++++|...+|.||+++||.|+. .|...
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999999999999999999999999999999999987 89543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-70 Score=666.06 Aligned_cols=619 Identities=28% Similarity=0.385 Sum_probs=520.2
Q ss_pred cCccccCCCCCCeeeCCCCCCCCCCCCc--cccCCCCCCEEECCCCCCCCCCCccC-CCCCCCcEEecCCCCccCCCCcc
Q 047797 106 ISPALLKLRGLRHLDLSKNDFGGSPVPE--FIGSLSKLRYLNLSCGTPSSKIPHPF-RDLSGFEYFNVENSNLFSVGSLE 182 (927)
Q Consensus 106 ~~~~l~~l~~L~~L~Ls~n~~~~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~ 182 (927)
+|+.++++++|++|||++|.+.+. +|. .++++++|++|++++|.+.+.+|..+ +++++|++|++++|.+.......
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 457899999999999999999985 887 89999999999999999999998877 89999999999999875433222
Q ss_pred --cccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcch
Q 047797 183 --RLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYP 260 (927)
Q Consensus 183 --~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 260 (927)
.+.++++|++|++++|.+++... +..+++|++|++++|.+++..+ . +.++ ++|++|++++|.+++ .+|.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~-l~~l-~~L~~L~Ls~n~l~~-~~~~ 241 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP--F-LGDC-SALQHLDISGNKLSG-DFSR 241 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC--B-CTTC-CSCCEEECCSSCCCS-CHHH
T ss_pred hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc--c-cccC-CCCCEEECcCCcCCC-cccH
Confidence 17899999999999999987533 3789999999999999999877 3 6677 999999999999987 7888
Q ss_pred hHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCC-CCCcEEeCCCCCCCCchhHHHhhcc
Q 047797 261 WLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNM-CSLNQLYLPRNKLSGQLSELIQNLS 339 (927)
Q Consensus 261 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~ 339 (927)
.+..+. +|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..++.++
T Consensus 242 ~l~~l~-~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HTTTCS-SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHhcCC-CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 888887 9999999999999888775 89999999999999999999888775 9999999999999999999999888
Q ss_pred CCCcCCCccEEEccCCCCcccCCC--CCCCCCCCEEEccCCcCCCcchhhhhccC-CCCEEecCCcccccccChhhhhc-
Q 047797 340 SGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLF-KLETLSLDGNSFTGVISETFFSN- 415 (927)
Q Consensus 340 ~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~- 415 (927)
+|++|++++|.+.+.+|. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|.. +..
T Consensus 319 ------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~ 391 (768)
T 3rgz_A 319 ------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQN 391 (768)
T ss_dssp ------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCS
T ss_pred ------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhc
Confidence 999999999999877775 88999999999999999888888888887 8999999999998877764 444
Q ss_pred -CCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccce
Q 047797 416 -MSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFF 494 (927)
Q Consensus 416 -l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 494 (927)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+... ++|++
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~ 470 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLET 470 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceE
Confidence 7789999999998888777777777777777777777777777777777777777777777777777665443 46677
Q ss_pred eecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCcccccc
Q 047797 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGK 573 (927)
Q Consensus 495 L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~ 573 (927)
|++++|++++.+|..+..+ ++|++|++++|++++ +|.++..+++|++|++++|++++.
T Consensus 471 L~L~~N~l~~~~p~~l~~l---------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNC---------------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp EECCSSCCCSCCCGGGGGC---------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred EEecCCcccCcCCHHHhcC---------------------CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 7777766666666554444 456666666677765 777788888888888888888888
Q ss_pred CCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC----------------------cCCCCCChhhhhcCc
Q 047797 574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN----------------------ALFGEVPTCVGGSLQ 631 (927)
Q Consensus 574 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~p~~~~~~l~ 631 (927)
+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+ .+.+..+..+. .++
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 608 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLS 608 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh-ccc
Confidence 8888888888888888888888888887777666555544331 13345555555 578
Q ss_pred cCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecc
Q 047797 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD 711 (927)
Q Consensus 632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (927)
.++.++++.|.+.|.+|..+..+++|+.|||++|+++|.+|..+++++.|
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L------------------------------ 658 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL------------------------------ 658 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC------------------------------
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC------------------------------
Confidence 88889999999999999999999999999999999999999999887665
Q ss_pred eeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797 712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791 (927)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 791 (927)
+.|||++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++||+++|+++|
T Consensus 659 --------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 659 --------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp --------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred --------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCeEeCcCCcCcccCC
Q 047797 792 NIPSSLSLLSGLSVLDLSYNSLSGKIP 818 (927)
Q Consensus 792 ~~p~~l~~l~~L~~L~ls~N~l~~~~p 818 (927)
.+|.. ..+..+....+.+|+.-|.-|
T Consensus 719 ~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 719 PIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp ECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred cCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 99975 334456666778887555434
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-59 Score=564.44 Aligned_cols=537 Identities=23% Similarity=0.239 Sum_probs=383.0
Q ss_pred hcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhc
Q 047797 210 VSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQH 289 (927)
Q Consensus 210 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 289 (927)
++++++|++|++++|.+++.++ ..+.++ ++|++|++++|++++ ..|..+..+. +|++|++++|.+++..|..+++
T Consensus 69 ~~~l~~L~~L~L~~n~l~~l~~--~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~ 143 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQLSD--KTFAFC-TNLTELHLMSNSIQK-IKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQ 143 (680)
T ss_dssp HHHCTTCCEEECCSSCCCCCCT--TTTTTC-TTCSEEECCSSCCCC-CCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSC
T ss_pred HhcccCcCEEECCCCccCccCh--hhhccC-CCCCEEECCCCccCc-cChhHccccC-CCCEEECCCCcccccCchhhcc
Confidence 3344444444444444444443 234455 777777777777754 2233444555 7777777777777666666777
Q ss_pred CCCCCEEEccCCcCCCcCccccc--CCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-C--
Q 047797 290 MVSLRLLSLASNELEGGIPKFFG--NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-L-- 364 (927)
Q Consensus 290 l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l-- 364 (927)
+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+. +|+.|++.++.+.+.... +
T Consensus 144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~~~l~~~~~~~~~~ 217 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG------RLFGLFLNNVQLGPSLTEKLCL 217 (680)
T ss_dssp CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS------EECEEECTTCCCHHHHHHHHHH
T ss_pred cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhh------hhhhhhccccccChhhHHHHHH
Confidence 77777777777777766665543 446677777777777776666666666 677777766665432111 0
Q ss_pred -CCCCCCCEEEccCCcCCCcchhhhhccCC--CCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCccccc
Q 047797 365 -GRFLSLKVLKLGENHLNGTINKSLSHLFK--LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF 441 (927)
Q Consensus 365 -~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 441 (927)
...++|+.|++++|.+++..|..+..++. |++|++++|++++..+. .|..+++|++|++++|.+.+..+..+..++
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCC
Confidence 12356777777777776666666666543 77777777776644433 466667777777777776666666666666
Q ss_pred ccceeecccccCCCC-----CCh----hhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCcccc
Q 047797 442 QLKWLSLASCKMGPH-----FPN----WLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVL 512 (927)
Q Consensus 442 ~L~~L~L~~~~~~~~-----~~~----~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 512 (927)
+|+.|++++|...+. +|. .+..+++|++|++++|. +++..+..+..
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-------------------------l~~~~~~~~~~ 351 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-------------------------IPGIKSNMFTG 351 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-------------------------BCCCCTTTTTT
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-------------------------cCCCChhHhcc
Confidence 666666665543321 111 34444445555555544 44444444444
Q ss_pred CCCCcEEeccCCccCCCC-CC------CCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCC-CcccccCc
Q 047797 513 KSDDIVIDISSNNFDGPI-PP------LPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIP-DSMGFLHN 583 (927)
Q Consensus 513 ~~~l~~l~l~~n~~~~~~-~~------~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 583 (927)
+++|+++++++|.+.... +. ...+|+.|++++|++++ .|..+..+++|++|++++|.+.+.+| ..|.++++
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence 555555555555432211 11 12579999999999999 67789999999999999999988776 67899999
Q ss_pred ccEEEcccccccccCCccccCCCCCCEEecCCCcCC--CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEE
Q 047797 584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF--GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLD 661 (927)
Q Consensus 584 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 661 (927)
|++|++++|++.+..+..|..+++|++|++++|.+. +.+|..+. .+++|++|++++|++++..+..+.++++|++|+
T Consensus 432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 510 (680)
T 1ziw_A 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510 (680)
T ss_dssp CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEe
Confidence 999999999999999999999999999999999986 56787776 799999999999999988888899999999999
Q ss_pred ccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcc
Q 047797 662 LSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741 (927)
Q Consensus 662 Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 741 (927)
+++|++++..+..+..- ....+..+++|+.|+|++|++
T Consensus 511 Ls~N~l~~~~~~~~~~~------------------------------------------~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 511 LQHNNLARLWKHANPGG------------------------------------------PIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CCSSCCGGGGSTTSTTS------------------------------------------CCCTTTTCTTCCEEECCSSCC
T ss_pred CCCCCccccchhhccCC------------------------------------------cchhhcCCCCCCEEECCCCCC
Confidence 99999986543322110 011234567789999999999
Q ss_pred cccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcccc-CCCCCCeEeCcCCcCcccCCC-
Q 047797 742 CEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS-LLSGLSVLDLSYNSLSGKIPL- 819 (927)
Q Consensus 742 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~- 819 (927)
+.+.+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+++++++|++.|.|+.
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~ 628 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccH
Confidence 976667899999999999999999988888899999999999999999998888787 789999999999999999996
Q ss_pred CCcCCCC
Q 047797 820 GTQLQSF 826 (927)
Q Consensus 820 ~~~~~~~ 826 (927)
.++..+.
T Consensus 629 ~~~~~~~ 635 (680)
T 1ziw_A 629 AWFVNWI 635 (680)
T ss_dssp SSEECCS
T ss_pred HHHHHHH
Confidence 4444444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-57 Score=545.98 Aligned_cols=591 Identities=22% Similarity=0.235 Sum_probs=416.3
Q ss_pred cccccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCC
Q 047797 100 KFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVG 179 (927)
Q Consensus 100 ~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 179 (927)
..++ .+|..+. +++++|+|++|.+++. .+..++++++|++|++++|.+.+..|..|+++++|++|++++|.+...+
T Consensus 14 ~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 14 LKLT-QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp SCCS-SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCcc-ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 3343 4565554 7899999999999885 5667999999999999999999988988999999999999888765432
Q ss_pred CcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcc
Q 047797 180 SLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVY 259 (927)
Q Consensus 180 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 259 (927)
...++++++|++|++++|.+++.. +..++++++|++|++++|.+++..+ ..+.++ ++|++|++++|.+++ ..+
T Consensus 90 -~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~-~~~ 162 (680)
T 1ziw_A 90 -DKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKL--GTQVQL-ENLQELLLSNNKIQA-LKS 162 (680)
T ss_dssp -TTTTTTCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCC--CSSSCC-TTCCEEECCSSCCCC-BCH
T ss_pred -hhhhccCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCc--hhhccc-ccCCEEEccCCcccc-cCH
Confidence 134778888888888888876642 2456777888888888887777666 344555 777777777777754 333
Q ss_pred hhHh--hcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCccccc---CCCCCcEEeCCCCCCCCchhHH
Q 047797 260 PWLF--NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFG---NMCSLNQLYLPRNKLSGQLSEL 334 (927)
Q Consensus 260 ~~l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~~~~ 334 (927)
..+. ... +|++|++++|.+++..|..|..+++|+.|+++++.+.......+. ..++|+.|++++|.+++..|..
T Consensus 163 ~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 163 EELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHGGGTTC-EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHhhccccc-cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 3322 223 677777777777766666677777777777776665432221111 2356666777766666666666
Q ss_pred HhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhh
Q 047797 335 IQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413 (927)
Q Consensus 335 l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 413 (927)
+..+. .++|++|++++|.+++..+. ++.+++|++|++++|.+++..|..+.++++|++|++++|...+.++..
T Consensus 242 ~~~l~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-- 315 (680)
T 1ziw_A 242 FLGLK----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-- 315 (680)
T ss_dssp TGGGG----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------
T ss_pred hhccC----cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc--
Confidence 65554 01366666666666665555 666666666666666666666666666666666666655433221100
Q ss_pred hcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCC-ccch-HHhh-cc
Q 047797 414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT-IPDW-FWDL-SI 490 (927)
Q Consensus 414 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~-~~~~-~~ 490 (927)
.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... ++.. +... .+
T Consensus 316 --------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 316 --------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ---------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred --------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 01111122444555666666666666666666677777777777777764322 1111 1111 13
Q ss_pred ccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CC-cccccCCCCCEEEccCc
Q 047797 491 ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LP-DCWLNFNSLSILNLANN 568 (927)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp-~~~~~l~~L~~L~Ls~n 568 (927)
+|+.|++++|++++..|..+.. +++|++|++++|++++ +| ..+.++++|++|++++|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~---------------------l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSW---------------------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTT---------------------CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred cCceEECCCCCCCeEChhhhhC---------------------CCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 5666666666666555544333 3456667777777765 55 57788899999999999
Q ss_pred cccccCCCcccccCcccEEEccccccc--ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee
Q 047797 569 RFSGKIPDSMGFLHNIQTLSLRNNRLN--GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646 (927)
Q Consensus 569 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 646 (927)
++.+..+..|..+++|+.|++++|.+. +..|..|.++++|++|++++|++++..|..+. .+++|++|++++|++++.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc-cccccCEEeCCCCCcccc
Confidence 999888888999999999999999887 56788899999999999999999765555554 789999999999999865
Q ss_pred cC--------ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeee
Q 047797 647 IP--------FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWK 718 (927)
Q Consensus 647 ~~--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (927)
.+ ..+.++++|++|++++|+++...+..|.+++.|
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------------------------------------- 562 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL------------------------------------- 562 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc-------------------------------------
Confidence 32 237889999999999999985444556665544
Q ss_pred cccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc-CCCCCCeEeCCCCcCcccCC
Q 047797 719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG-QLKSLDFLDLSRNHFSGNIP 794 (927)
Q Consensus 719 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p 794 (927)
+.|||++|++++.++..|.++++|++|+|++|++++.+|..+. .+++|+.|++++|++...-+
T Consensus 563 -------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 563 -------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred -------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999999998888899999999999999999999888887 78999999999999987544
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-55 Score=539.33 Aligned_cols=558 Identities=22% Similarity=0.250 Sum_probs=332.9
Q ss_pred CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCC-CccCCCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKI-PHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191 (927)
Q Consensus 113 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~ 191 (927)
.++|++|||++|.+++. .|..++++++|++|+|++|...+.+ |..|+++++|++|+|++|.+...
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~------------- 88 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL------------- 88 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-------------
T ss_pred CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-------------
Confidence 45677777777777664 5666777777777777777555554 55666666666666665554322
Q ss_pred EEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccE
Q 047797 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILH 271 (927)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~ 271 (927)
.+..++++++|++|++++|.+++..+....+.++ ++|++|++++|.+++...++.+.++. +|++
T Consensus 89 --------------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~ 152 (844)
T 3j0a_A 89 --------------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLN-SLKS 152 (844)
T ss_dssp --------------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCS-SCCE
T ss_pred --------------CHhHccCCcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCC-CCCE
Confidence 1234444555555555555554433211123444 66666666666665422233444444 6666
Q ss_pred EEccCCcCcCCcchhhhcC--CCCCEEEccCCcCCCcCcccccCCCC------CcEEeCCCCCCCCchhHHHhhccCCCc
Q 047797 272 LDLGFNHLQGSIPEAFQHM--VSLRLLSLASNELEGGIPKFFGNMCS------LNQLYLPRNKLSGQLSELIQNLSSGCT 343 (927)
Q Consensus 272 L~Ls~n~i~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~~~~~l~~l~~~~~ 343 (927)
|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++..+..+.... .
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---~ 229 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---S 229 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---C
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---C
Confidence 6666666666666666655 66666777766666666655555444 67777777766665555444321 1
Q ss_pred CCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhcc--CCCCEEecCCcccccccChhhhhcCCCCCE
Q 047797 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHL--FKLETLSLDGNSFTGVISETFFSNMSNLQM 421 (927)
Q Consensus 344 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 421 (927)
..+++.+.++.+.... +...+.+.+..+..|..+ ++|++|++++|.+.+..+. .|..+++|+.
T Consensus 230 ~~~l~~L~l~~~~~~~--------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 294 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGA--------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKV 294 (844)
T ss_dssp SCCBSEEECCSSCCBC--------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCE
T ss_pred cccccceecccccccc--------------cccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCE
Confidence 1245555554332211 011222332333333332 4555555555555533332 3455555555
Q ss_pred EEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeeccccc
Q 047797 422 LFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNH 501 (927)
Q Consensus 422 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~ 501 (927)
|++++|++.+..+.. +..+++|++|++++|.+.+..|..+..
T Consensus 295 L~L~~n~i~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------- 336 (844)
T 3j0a_A 295 LNLAYNKINKIADEA------------------------FYGLDNLQVLNLSYNLLGELYSSNFYG-------------- 336 (844)
T ss_dssp EEEESCCCCEECTTT------------------------TTTCSSCCEEEEESCCCSCCCSCSCSS--------------
T ss_pred EECCCCcCCCCChHH------------------------hcCCCCCCEEECCCCCCCccCHHHhcC--------------
Confidence 555555555443333 334444444444444443322222111
Q ss_pred ccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccc
Q 047797 502 ISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGF 580 (927)
Q Consensus 502 l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 580 (927)
+++|++|++++|+++.++ ..+..+++|++|++++|.+++. ..
T Consensus 337 --------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~ 379 (844)
T 3j0a_A 337 --------------------------------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HF 379 (844)
T ss_dssp --------------------------------CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SS
T ss_pred --------------------------------CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cC
Confidence 112333333333333322 2345556666666666666532 12
Q ss_pred cCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCc-cccCCCCCCE
Q 047797 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPF-QLCHLAFIQV 659 (927)
Q Consensus 581 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~ 659 (927)
+++|+.|++++|+++ .+|.. ..+++.|++++|++.+.-.......+++|++|++++|++++..+. .+..+++|+.
T Consensus 380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 455 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455 (844)
T ss_dssp CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence 566677777777766 33332 356777777777775432222223577888888888888755433 3456788999
Q ss_pred EEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC
Q 047797 660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN 739 (927)
Q Consensus 660 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 739 (927)
|++++|.+++..+..+ ....+..+++|+.|||++|
T Consensus 456 L~Ls~N~l~~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 456 LFLGENMLQLAWETEL---------------------------------------------CWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CEEESCCCSSSCCSCC---------------------------------------------CSSCSSCBCCEECCCCCHH
T ss_pred ccCCCCcccccccccc---------------------------------------------chhhhcCcccccEEECCCC
Confidence 9999998874332111 0111234566799999999
Q ss_pred cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797 740 KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 740 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
++++.+|..|.++++|++|+|++|++++..|..+. ++|+.|||++|++++.+|..|. +|++|++++|++.|.|+.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence 99999999999999999999999999998887776 8999999999999999998764 789999999999999996
Q ss_pred CCcCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 047797 820 GTQLQSFNASVYAGNLELCGLPLPNKCADEES 851 (927)
Q Consensus 820 ~~~~~~~~~~~~~~n~~lc~~~~~~~C~~~~~ 851 (927)
..+..++ ..++..+||.+....|..++.
T Consensus 566 ~~f~~~~----~~~~~~~~~~~~~~~C~~p~~ 593 (844)
T 3j0a_A 566 STFINWL----NHTNVTIAGPPADIYCVYPDS 593 (844)
T ss_dssp CSHHHHH----HHTTTTTCCCGGGCCCSSCSS
T ss_pred HHHHHHH----HhcCcccccccccCccCCchh
Confidence 5443332 345677888888888976544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.3e-54 Score=511.27 Aligned_cols=532 Identities=21% Similarity=0.164 Sum_probs=367.7
Q ss_pred ccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccc
Q 047797 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERL 184 (927)
Q Consensus 105 ~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l 184 (927)
.+|..+.. ++++|||++|.+++. .|..++++++|++|++++|.+.+..|..|+++++|++|++++|.
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---------- 92 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP---------- 92 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----------
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc----------
Confidence 45544432 577777777777764 56677777777777777777766666655555555555553332
Q ss_pred cCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhh
Q 047797 185 SHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFN 264 (927)
Q Consensus 185 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~ 264 (927)
+++..+ ..+.++ +
T Consensus 93 -----------------------------------------l~~~~~--~~~~~l-~----------------------- 105 (606)
T 3t6q_A 93 -----------------------------------------LIFMAE--TALSGP-K----------------------- 105 (606)
T ss_dssp -----------------------------------------CSEECT--TTTSSC-T-----------------------
T ss_pred -----------------------------------------ccccCh--hhhccc-c-----------------------
Confidence 222222 122222 4
Q ss_pred cccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcC
Q 047797 265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTV 344 (927)
Q Consensus 265 ~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~ 344 (927)
+|++|++++|.+++..+..|+++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..++.++
T Consensus 106 ---~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----- 177 (606)
T 3t6q_A 106 ---ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ----- 177 (606)
T ss_dssp ---TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-----
T ss_pred ---cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-----
Confidence 555555555555555555677777777777777777764444444577888888888888777777777777
Q ss_pred CCcc--EEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCccccc----ccChhhhhcCC-
Q 047797 345 NSLE--GLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG----VISETFFSNMS- 417 (927)
Q Consensus 345 ~~L~--~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~~l~- 417 (927)
+|+ .|++++|.+.+..|......+|++|++++|. ..+..+..+.+++...+....+.+ .++...+..+.
T Consensus 178 -~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 178 -QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp -TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred -ccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 777 7788888888777774455678888888876 445566666665544443322211 12222233222
Q ss_pred -CCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceee
Q 047797 418 -NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLN 496 (927)
Q Consensus 418 -~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 496 (927)
+|+.|++++|.++...+..|..+++|++|++++|.+. .+|..+..+++ |++|+
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-------------------------L~~L~ 307 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-------------------------LKKLV 307 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-------------------------CCEEE
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccccc-------------------------CCEEE
Confidence 4555555555555444444444444444444444444 33444444444 44444
Q ss_pred cccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CC-cccccCCCCCEEEccCccccccC
Q 047797 497 LSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LP-DCWLNFNSLSILNLANNRFSGKI 574 (927)
Q Consensus 497 Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp-~~~~~l~~L~~L~Ls~n~l~~~~ 574 (927)
+++|++++..|..+..++ +|++|++++|.+.+ +| ..+..+++|++|++++|.+.+..
T Consensus 308 l~~n~l~~~~~~~~~~l~---------------------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 308 LSANKFENLCQISASNFP---------------------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp CTTCCCSBGGGGCGGGCT---------------------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CccCCcCcCchhhhhccC---------------------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 444444443333333333 34444444444443 33 34677888889999988888765
Q ss_pred --CCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCcccc
Q 047797 575 --PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC 652 (927)
Q Consensus 575 --~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 652 (927)
+..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..|......+++|++|++++|.+.+..|..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 777888899999999999998888888999999999999999987776655334789999999999999988888899
Q ss_pred CCCCCCEEEccccccccccc---hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeeccccccccccc
Q 047797 653 HLAFIQVLDLSLNNISGKIP---KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG 729 (927)
Q Consensus 653 ~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 729 (927)
.+++|++|++++|++++... ..+.. ++
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------------------------------------------------l~ 476 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQT--------------------------------------------------LG 476 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGG--------------------------------------------------CT
T ss_pred CCCCCCEEECCCCCCCccccccchhhcc--------------------------------------------------CC
Confidence 99999999999999876321 23333 45
Q ss_pred ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 809 (927)
+|+.|++++|++++.+|..|.++++|++|+|++|++++.+|..+.++++| +||+++|++++..|..+..+++|++|+++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 56999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcCcccCCCCCcCCCC
Q 047797 810 YNSLSGKIPLGTQLQSF 826 (927)
Q Consensus 810 ~N~l~~~~p~~~~~~~~ 826 (927)
+|++.|.|+..+...|+
T Consensus 556 ~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 556 QNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp TCCEECSGGGHHHHHHH
T ss_pred CCCccccCCcHHHHHHH
Confidence 99999999865544444
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-53 Score=506.55 Aligned_cols=535 Identities=22% Similarity=0.175 Sum_probs=313.3
Q ss_pred CEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEE
Q 047797 217 KTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296 (927)
Q Consensus 217 ~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 296 (927)
++++.+++.++.++.. ..+++++|++++|.+++ ..+..+.++. +|++|++++|.+++..|..|+++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~------~~~~l~~L~Ls~n~l~~-~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD------IPSSTKNIDLSFNPLKI-LKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp TEEECTTSCCSSCCTT------SCTTCCEEECTTSCCCE-ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceEccCCCcccCCCC------CCCCcCEEECCCCCcCE-eChhhccCCc-cCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 3455555555544431 11445555555555532 2222333333 55555555555554444455555555555
Q ss_pred EccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcc-cCCC-CCCCCCCCEEE
Q 047797 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIPD-LGRFLSLKVLK 374 (927)
Q Consensus 297 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~-~~~~-l~~l~~L~~L~ 374 (927)
++++|++++..|..|+++++|++|++++|.+++..+..+++++ +|++|++++|.+.+ .+|. ++++++|++|+
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT------TCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC------CCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 5555555544455555555555555555555444434444444 55555555555443 2233 44555555555
Q ss_pred ccCCcCCCcchhhhhccCCCC----EEecCCcccccccChhhhhcCCCCCEEEccCCccee-cccCCcccccccceeecc
Q 047797 375 LGENHLNGTINKSLSHLFKLE----TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTL-KLSHDWVPAFQLKWLSLA 449 (927)
Q Consensus 375 Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~ 449 (927)
+++|.+++..+..++.+++|+ +|++++|.+++ ++...+... +|++|++++|.+.+ ..+..+..+..++.+++.
T Consensus 160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred ccCCcceecChhhhhhhhccccccceeeccCCCcce-eCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 555555544444444433332 45555555442 222222222 45555555554431 222223333344433332
Q ss_pred cccCCC------CCChhhhcCc--cccEEEc-cCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEe
Q 047797 450 SCKMGP------HFPNWLQTQN--QLISLDI-SNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVID 520 (927)
Q Consensus 450 ~~~~~~------~~~~~l~~~~--~L~~L~L-s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~ 520 (927)
.+.+.. ..+..+..+. .++.+++ ..+.+.+.+|. +...++|+.|++++|.+.. +| .+..+++++.++
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~ 313 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLS 313 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEE
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEE
Confidence 222111 1111111111 2334444 44555555554 3334566777777666643 33 445556667777
Q ss_pred ccCCccCCCCCCC-CCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCcccccc--CCCcccccCcccEEEcccccccc
Q 047797 521 ISSNNFDGPIPPL-PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGK--IPDSMGFLHNIQTLSLRNNRLNG 596 (927)
Q Consensus 521 l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~ 596 (927)
+++|.+ +.+|.. +++|++|++++|+..+ + .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++
T Consensus 314 l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 390 (606)
T 3vq2_A 314 IIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390 (606)
T ss_dssp EESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE
T ss_pred cccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc
Confidence 777766 444432 5566677777764443 3 345666777777777776654 25566666777777777777664
Q ss_pred cCCccccCCCCCCEEecCCCcCCCCCC-hhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc-ccchh
Q 047797 597 ELPSSLKNCSKLRVLDLRKNALFGEVP-TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKC 674 (927)
Q Consensus 597 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~ 674 (927)
+|..+..+++|++|++++|++.+..| ..+. .+++|++|++++|.+.+..|..+.++++|++|++++|++++ .+|..
T Consensus 391 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp -ECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred -chhhccCCCCCCeeECCCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 44666667777777777777765555 2333 56777777777777776666667777777777777777665 24554
Q ss_pred hccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC
Q 047797 675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754 (927)
Q Consensus 675 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 754 (927)
+.+ +++|+.|++++|++++.+|..|.++++
T Consensus 469 ~~~--------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 469 FAN--------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp CTT--------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hcc--------------------------------------------------CCCCCEEECCCCcCCccChhhhccccc
Confidence 544 445599999999999999999999999
Q ss_pred CCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCC-CCCeEeCcCCcCcccCCCCCcCCCCc
Q 047797 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS-GLSVLDLSYNSLSGKIPLGTQLQSFN 827 (927)
Q Consensus 755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~ 827 (927)
|++|+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ +|++|++++|++.|.||..+...++.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 999999999999999999999999999999999999 6777788887 59999999999999999765555543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8e-52 Score=493.16 Aligned_cols=509 Identities=20% Similarity=0.194 Sum_probs=373.2
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
.+++|++++|.+++..|..|+++++|++|++++|++.+..|.+|.++++|++|++++|.+++..|..+++++ +|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L 107 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK------AL 107 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT------TC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc------cc
Confidence 556666666666655555666666666666666666665566666666666666666666655555555555 66
Q ss_pred cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCC--EEEc
Q 047797 348 EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ--MLFL 424 (927)
Q Consensus 348 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L 424 (927)
++|++++|.+++..+. ++.+++|++|++++|.+++.....+..+++|++|++++|.+++..+ ..+..+++|+ .|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hhhhhhcccceeEEec
Confidence 6666666666655444 6666666666666666665433334446666666666666653333 3466666666 6666
Q ss_pred cCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCC----Cc-cchHHhhc-cccceeecc
Q 047797 425 ADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD----TI-PDWFWDLS-IELFFLNLS 498 (927)
Q Consensus 425 ~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~----~~-~~~~~~~~-~~L~~L~Ls 498 (927)
++|.+.+..+..+.. .+|+.|++++|. ..+..+..+.+++...+.-..+.+ .+ +..+.... .+++.|+++
T Consensus 187 ~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred CCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 666666655554433 456666666664 334445555444433333222211 11 12221111 268888888
Q ss_pred cccccCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccC
Q 047797 499 NNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKI 574 (927)
Q Consensus 499 ~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~ 574 (927)
+|.+++..+..+..+++++++++++|+++. +|.. +++|++|++++|++++ .|..+..+++|++|++++|.+.+.+
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 888888877777888889999999988874 4432 5789999999999999 4678899999999999999998666
Q ss_pred CC-cccccCcccEEEcccccccccC--CccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCcc-
Q 047797 575 PD-SMGFLHNIQTLSLRNNRLNGEL--PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ- 650 (927)
Q Consensus 575 ~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~- 650 (927)
|. .+..+++|++|++++|++++.. +..+..+++|++|++++|++.+..|..+. .+++|++|++++|++.+..+..
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchh
Confidence 65 4889999999999999998776 77899999999999999999777777776 7999999999999998876654
Q ss_pred ccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccc
Q 047797 651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGF 730 (927)
Q Consensus 651 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 730 (927)
+..+++|++|++++|.+++..|..+..++.|
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------------- 451 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL------------------------------------------------- 451 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-------------------------------------------------
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCC-------------------------------------------------
Confidence 8899999999999999998888777765544
Q ss_pred eeEEEccCCccccc---CccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEe
Q 047797 731 VKYLDLSSNKLCEA---IPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLD 807 (927)
Q Consensus 731 L~~LdLs~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 807 (927)
+.|++++|++++. .+..+.++++|++|++++|++++.+|..|+.+++|++|||++|++++..|..+..++.| +|+
T Consensus 452 -~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 452 -QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp -CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred -CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 9999999999873 33678999999999999999999999999999999999999999999999999999999 999
Q ss_pred CcCCcCcccCCCC-CcCCCCcccccCCCCCCCCC
Q 047797 808 LSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGL 840 (927)
Q Consensus 808 ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 840 (927)
+++|++++..|.. ..+..+....+.||+..|+.
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999876643 23445566667788777753
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-53 Score=504.08 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhhhcCcCCC--------CCcCCCCCCCCCCCCccc---cceeecCCCCCEEEEECCCCchhhhhccccc
Q 047797 35 CIDEEREALLTFKQSLVDEY--------GVLSSWGSEDGKRDCCKW---RGVRCSNTTGHVKVLNLQTSDHEFARRKFLK 103 (927)
Q Consensus 35 ~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~ 103 (927)
....|+.||.++|+++.++. ...++|. .+.+||.| .||+|+. .|||++|+|++ +.+.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~--------~~l~ 94 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEG--------FGAS 94 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTT--------SCCE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecC--------cccC
Confidence 34569999999999986443 2345798 47899999 9999975 48999999999 8899
Q ss_pred cccCccccCCCCCCeeeCCCCCC
Q 047797 104 GKISPALLKLRGLRHLDLSKNDF 126 (927)
Q Consensus 104 g~~~~~l~~l~~L~~L~Ls~n~~ 126 (927)
|.+|++++++++|++|||++|.+
T Consensus 95 g~lp~~l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 95 GRVPDAIGQLTELEVLALGSHGE 117 (636)
T ss_dssp EEECGGGGGCTTCCEEESCCGGG
T ss_pred CcCChHHhcCccceEEECcCCcc
Confidence 99999999999999999999976
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=499.05 Aligned_cols=522 Identities=23% Similarity=0.234 Sum_probs=375.3
Q ss_pred EEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCCCcEEeCC
Q 047797 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLNQLYLP 323 (927)
Q Consensus 245 ~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~ 323 (927)
..+.++++++ .+|. .++++++|+|++|.+++..|..|.++++|++|++++|...+.+ |.+|.++++|++|+|+
T Consensus 8 ~~dcs~~~L~--~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLT--QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSS--CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCC--CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 3444555553 3343 2335666666666666555566666666666666666443333 5556666666666666
Q ss_pred CCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC---CCCCCCCCEEEccCCcCCCcch-hhhhccCCCCEEec
Q 047797 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD---LGRFLSLKVLKLGENHLNGTIN-KSLSHLFKLETLSL 399 (927)
Q Consensus 324 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L 399 (927)
+|.+++..|..|..++ +|++|++++|.+++..+. ++++++|++|++++|.+++..+ ..|+++++|++|++
T Consensus 82 ~N~l~~~~p~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLF------HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp TCCCCEECTTSSCSCS------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CCcCcccCHhHccCCc------ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 6666665566666555 666666666666653332 5666666666666666665443 35666666666666
Q ss_pred CCcccccccChhhhhcC--CCCCEEEccCCcceecccCCcccccc------cceeecccccCCCCCChhhhcC---cccc
Q 047797 400 DGNSFTGVISETFFSNM--SNLQMLFLADNSLTLKLSHDWVPAFQ------LKWLSLASCKMGPHFPNWLQTQ---NQLI 468 (927)
Q Consensus 400 ~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~L~~~~~~~~~~~~l~~~---~~L~ 468 (927)
++|.+++..+. .+..+ ++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.+..+..+... .+++
T Consensus 156 s~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 156 SSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp ESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 66666654444 34444 56666666666666655555444433 6777777776666666555432 4566
Q ss_pred EEEccCC---------ccCCCccchHHhh-ccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC---CC
Q 047797 469 SLDISNI---------GISDTIPDWFWDL-SIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PS 535 (927)
Q Consensus 469 ~L~Ls~n---------~l~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~ 535 (927)
.++++.+ .+.+..+..+... .++|+.|++++|.+.+..+..+..+++++.+++++|++.+..|.. ++
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 6666532 2222223333322 257899999999998888888888899999999999988776653 67
Q ss_pred CCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 536 NSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 536 ~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
+|++|++++|++++ .|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccC
Confidence 89999999999998 577899999999999999999988888899999999999999999843 237899999999
Q ss_pred CCcCCCCCChhhhhcCccCcEEEccCcccceec-CccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI-PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693 (927)
Q Consensus 615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 693 (927)
+|++. .+|.. ..+++.|++++|++++.. +..+..+++|++|++++|++++..+...
T Consensus 390 ~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------ 446 (844)
T 3j0a_A 390 GNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT------------------ 446 (844)
T ss_dssp SCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS------------------
T ss_pred CCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc------------------
Confidence 99995 66653 568999999999998643 2345689999999999999986543211
Q ss_pred ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccc-----ccCccccccccCCCEEeccccccccc
Q 047797 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC-----EAIPEEITDLVGLTALNLSRNNLTGL 768 (927)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~ 768 (927)
...+++|+.|+|++|.++ +..+..|.++++|++|+|++|++++.
T Consensus 447 -------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 447 -------------------------------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp -------------------------------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred -------------------------------cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence 012345699999999997 45567789999999999999999999
Q ss_pred CCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCC
Q 047797 769 IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL 842 (927)
Q Consensus 769 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 842 (927)
+|..|.++++|+.|||++|++++..|..+. ++|++||+++|++++..|. .+..+....+.||+..|+++.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence 999999999999999999999988877776 8999999999999999885 356677777899999997654
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-50 Score=482.10 Aligned_cols=529 Identities=19% Similarity=0.170 Sum_probs=450.8
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL 320 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 320 (927)
..-++++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|
T Consensus 11 ~~~~~~~c~~~~l~--~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 11 VPNITYQCMDQKLS--KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp ETTTEEECTTSCCS--SCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEccCCCcc--cCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 34568999999985 5676543 599999999999998888899999999999999999999889999999999999
Q ss_pred eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEe
Q 047797 321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLS 398 (927)
Q Consensus 321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~ 398 (927)
++++|.+++..|..|++++ +|++|++++|.+++..+. ++++++|++|++++|.+++ .+|..++++++|++|+
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLT------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCT------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred ECCCCcccccChhhcCCcc------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 9999999999899999988 999999999999988866 9999999999999999986 5689999999999999
Q ss_pred cCCcccccccChhhhhcCCCC----CEEEccCCcceecccCCcccccccceeecccccCC-CCCChhhhcCccccEEEcc
Q 047797 399 LDGNSFTGVISETFFSNMSNL----QMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG-PHFPNWLQTQNQLISLDIS 473 (927)
Q Consensus 399 L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~L~~L~Ls 473 (927)
+++|++++..+. .++.+++| ++|++++|.++...+..+... +|++|++++|.+. ...|.++.+++.++.+++.
T Consensus 160 Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 160 LSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp CCSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred ccCCcceecChh-hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 999999876554 46665555 489999999998887777665 8999999999886 4677889999999999887
Q ss_pred CCccCCC-----ccchHHhhc--cccceeec-ccccccCCCCCccccCCCCcEEeccCCccCCCCCCC--CCCCceEeCc
Q 047797 474 NIGISDT-----IPDWFWDLS--IELFFLNL-SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL--PSNSTFLNLS 543 (927)
Q Consensus 474 ~n~l~~~-----~~~~~~~~~--~~L~~L~L-s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~--~~~L~~L~L~ 543 (927)
.+.+.+. ++....... ..++.+++ ..|.+.+.+|. +..+++++.+++++|.+... |.. +.+|++|+++
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLSII 315 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEE
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-hhccccccCCEEEcc
Confidence 5544321 111111111 14666777 67788888887 78889999999999998653 333 5689999999
Q ss_pred CCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccccc--CCccccCCCCCCEEecCCCcCCCC
Q 047797 544 KNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE--LPSSLKNCSKLRVLDLRKNALFGE 621 (927)
Q Consensus 544 ~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~ 621 (927)
+|++..+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+. .
T Consensus 316 ~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~ 390 (606)
T 3vq2_A 316 RCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 390 (606)
T ss_dssp SCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-E
T ss_pred cccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-c
Confidence 99997799 45 9999999999999766544 577899999999999999876 4888999999999999999985 4
Q ss_pred CChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccc
Q 047797 622 VPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV 700 (927)
Q Consensus 622 ~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 700 (927)
+|..+. .+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+.+++.|
T Consensus 391 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------- 450 (606)
T 3vq2_A 391 MSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL------------------- 450 (606)
T ss_dssp ECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-------------------
T ss_pred chhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-------------------
Confidence 666665 79999999999999998877 688999999999999999998888877765555
Q ss_pred cccceeeeecceeEEeeecccccccccccceeEEEccCCcccc-cCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797 701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779 (927)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 779 (927)
+.|++++|++++ .+|..++++++|++|+|++|++++.+|..++++++|
T Consensus 451 -------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 451 -------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp -------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred -------------------------------CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 999999999998 578899999999999999999999999999999999
Q ss_pred CeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC-CcCC-CCcccccCCCCCCCCCC
Q 047797 780 DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-TQLQ-SFNASVYAGNLELCGLP 841 (927)
Q Consensus 780 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~n~~lc~~~ 841 (927)
++|++++|++++.+|..+..+++|++|++++|+++ .+|.. ..+. ++....+.+|+..|+.+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999999999999998 56754 1222 35556688898888654
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.7e-50 Score=481.25 Aligned_cols=537 Identities=18% Similarity=0.208 Sum_probs=290.6
Q ss_pred cCCCCHHHHHHHHHhhhcCcCCCCCcCCCCCCC--CCCCC--ccc------------cceeecCCCCCEEEEECCCCchh
Q 047797 32 ITRCIDEEREALLTFKQSLVDEYGVLSSWGSED--GKRDC--CKW------------RGVRCSNTTGHVKVLNLQTSDHE 95 (927)
Q Consensus 32 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~ 95 (927)
.+.+..+|+.||++||+++.+| +|+..+ ...+| |.| .||+|+. .+||++|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence 3446678999999999999876 797411 01344 999 9999975 68999999999
Q ss_pred hhhccccccccCccccCCCCCCeeeC-CCCCCCCCCCCccccCC-CCCCE--------------EEC-CCCCCCCCCCcc
Q 047797 96 FARRKFLKGKISPALLKLRGLRHLDL-SKNDFGGSPVPEFIGSL-SKLRY--------------LNL-SCGTPSSKIPHP 158 (927)
Q Consensus 96 ~~~~~~l~g~~~~~l~~l~~L~~L~L-s~n~~~~~~lp~~l~~l-~~L~~--------------L~L-s~n~~~~~~p~~ 158 (927)
+.+.|.+|++++++++|++||| ++|.+++. .|...... ..+.. ++. ....+.+.++..
T Consensus 333 ----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 333 ----FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp ----TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred ----CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 8899999999999999999999 88877664 22111111 00000 000 000000000000
Q ss_pred CCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECC--CccCCCCCchHHhhcCCCCCCEEEcCCCCCCCC-CCchhh
Q 047797 159 FRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLS--CINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPI-NPSFIW 235 (927)
Q Consensus 159 l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~ 235 (927)
+...+... .+ . ......++.+.+. .|.+++ +|..++++++|++|+|++|.+++. .+. .
T Consensus 408 l~~~~~~~--~i-----------~-~~~~l~l~~l~l~~~~N~L~~---IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~-~- 468 (876)
T 4ecn_A 408 INRNPEMK--PI-----------K-KDSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPFTYDNIAV-D- 468 (876)
T ss_dssp HHTCTTSC--CC-----------C-CCCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSS-S-
T ss_pred hhhCcccc--cc-----------c-cccccchhhceeccccCcccc---hhHHHhcCCCCCEEECcCCcCCCCcccc-c-
Confidence 00000000 00 0 0011112222222 244443 344566666666666666665551 000 0
Q ss_pred ccccccCccEEEcCCCCCCCCCcchhHh--hcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCc-CCC-cCcccc
Q 047797 236 LFNLSTSIETLDLSDNHLPSSSVYPWLF--NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNE-LEG-GIPKFF 311 (927)
Q Consensus 236 l~~~~~~L~~L~Ls~n~l~~~~~~~~l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~ 311 (927)
.. ..+.|.+.+ .+|+.+. ++. +|++|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+
T Consensus 469 ~~---------~~s~n~~~g-~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i 537 (876)
T 4ecn_A 469 WE---------DANSDYAKQ-YENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537 (876)
T ss_dssp CS---------CTTSHHHHH-HTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred cc---------ccccccccc-cCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence 00 000011111 2333332 333 44444444444444444444444444444444444 443 334333
Q ss_pred cCCC-------CCcEEeCCCCCCCCchhH--HHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC
Q 047797 312 GNMC-------SLNQLYLPRNKLSGQLSE--LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG 382 (927)
Q Consensus 312 ~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 382 (927)
+.++ +|++|++++|.++ .+|. .++.++ +|+.|++++|.++ .+|.++.+++|+.|++++|.++
T Consensus 538 ~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~------~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~- 608 (876)
T 4ecn_A 538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV------KLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE- 608 (876)
T ss_dssp HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT------TCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-
T ss_pred HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC------CCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-
Confidence 3222 4444444444444 3333 444444 4444444444444 3334444555555555555555
Q ss_pred cchhhhhccCC-CCEEecCCcccccccChhhhhcCC--CCCEEEccCCcceecccCCcccccccceeecccccCCCCCCh
Q 047797 383 TINKSLSHLFK-LETLSLDGNSFTGVISETFFSNMS--NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPN 459 (927)
Q Consensus 383 ~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 459 (927)
.+|..+..+++ |++|++++|+++ .+|. .+..++ +|+.|++++|++.+ .+|.
T Consensus 609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~l~g------------------------~ip~ 662 (876)
T 4ecn_A 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNKIGS------------------------EGRN 662 (876)
T ss_dssp CCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSCTTT------------------------TSSS
T ss_pred cchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCcCCC------------------------cccc
Confidence 44444555554 555555555554 3332 222222 24444444444443 3222
Q ss_pred h---hh--cCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCC
Q 047797 460 W---LQ--TQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP 534 (927)
Q Consensus 460 ~---l~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 534 (927)
. +. ..++|+.|++++|.++ .+|..++..+++|+.|++++|+++ .+|........ .....+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-------------~~l~nl 727 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-------------GNYKNT 727 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-------------SCCTTG
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-------------cccccc
Confidence 1 11 2346677777777766 456555555556677777766665 33322110000 000012
Q ss_pred CCCceEeCcCCCCCCCCcccc--cCCCCCEEEccCccccccCCCcccccCcccEEEccc------ccccccCCccccCCC
Q 047797 535 SNSTFLNLSKNKFSGLPDCWL--NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN------NRLNGELPSSLKNCS 606 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~ 606 (927)
++|+.|++++|+++.+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+.+++
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 367888888888888888776 88888888888888886 677888888888888876 667777777777777
Q ss_pred CCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 607 KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 607 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
+|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..++....+..+.|.+|+..
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 777777777777 67776643 57777777777777666666655555666666666554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-49 Score=463.98 Aligned_cols=513 Identities=20% Similarity=0.207 Sum_probs=415.5
Q ss_pred cEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCC
Q 047797 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323 (927)
Q Consensus 244 ~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 323 (927)
..++.++..++ .+|..+ ++++++|++++|.+++..+.+|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 10 ~~~~c~~~~l~--~ip~~l---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 10 ITYQCMELNFY--KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TEEECCSSCCS--SCCSSS---CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEeCCCCcc--ccCCCc---cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 44555655553 455432 3478888888888887777788888888888888888888777888888888888888
Q ss_pred CCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCC
Q 047797 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDG 401 (927)
Q Consensus 324 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~ 401 (927)
+|.+++..+..|.+++ +|++|++++|.+++..+. ++.+++|++|++++|.+++ .+|..++++++|++|++++
T Consensus 85 ~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 85 GNPIQSLALGAFSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp TCCCCEECTTTTTTCT------TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCcCCccCHhhhcCcc------ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 8888887777888877 888999998888877665 8899999999999999887 4688899999999999999
Q ss_pred cccccccChhhhhcCCCC----CEEEccCCcceecccCCcccccccceeecccccCCC-CCChhhhcCccccEEEccCCc
Q 047797 402 NSFTGVISETFFSNMSNL----QMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGP-HFPNWLQTQNQLISLDISNIG 476 (927)
Q Consensus 402 n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~L~~L~Ls~n~ 476 (927)
|++++..+. .+..+++| +.+++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++.+.+....
T Consensus 159 n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 159 NKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp SCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred CccceecHH-HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 998855443 57777777 889999999988887777665 79999998875432 345667777777766654332
Q ss_pred cCC-----CccchHHhhc--cccceeecccc-cccCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCC
Q 047797 477 ISD-----TIPDWFWDLS--IELFFLNLSNN-HISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKN 545 (927)
Q Consensus 477 l~~-----~~~~~~~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n 545 (927)
+.. .++....... ..++.++++++ .+.+..+..+..+++++.+++++|.+.+ +|.. . +|++|++++|
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESC
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccC
Confidence 211 1111111111 14667777777 7778888888888999999999998875 4432 4 8999999999
Q ss_pred CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccC--CccccCCCCCCEEecCCCcCCCCCC
Q 047797 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGEL--PSSLKNCSKLRVLDLRKNALFGEVP 623 (927)
Q Consensus 546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p 623 (927)
.+..+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|++.+ +|
T Consensus 315 ~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~ 389 (570)
T 2z63_A 315 KFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389 (570)
T ss_dssp BCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EE
T ss_pred cccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cc
Confidence 9998886 4788999999999998877665 67899999999999998654 7788899999999999999855 44
Q ss_pred hhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccc
Q 047797 624 TCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPG 702 (927)
Q Consensus 624 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 702 (927)
..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+.+++.|
T Consensus 390 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------- 447 (570)
T 2z63_A 390 SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------- 447 (570)
T ss_dssp EEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred cccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------
Confidence 4454 79999999999999988766 568899999999999999998888777665544
Q ss_pred cceeeeecceeEEeeecccccccccccceeEEEccCCccc-ccCccccccccCCCEEecccccccccCCccccCCCCCCe
Q 047797 703 YIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC-EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF 781 (927)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 781 (927)
+.|++++|+++ +.+|..+..+++|++|+|++|++++..|..+..+++|++
T Consensus 448 -----------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 448 -----------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp -----------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -----------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 99999999998 678999999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcC-CCCc
Q 047797 782 LDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQL-QSFN 827 (927)
Q Consensus 782 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~-~~~~ 827 (927)
|++++|++++..|..+..+++|++|++++|+++|.||....+ .|+.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence 999999999998889999999999999999999999986555 4443
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-47 Score=448.40 Aligned_cols=492 Identities=20% Similarity=0.205 Sum_probs=373.0
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL 320 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 320 (927)
+.....|.+++.++ .+|+.++ ++|++|++++|++++..|..|+++++|++|++++|++++..|.+|.++++|++|
T Consensus 5 ~~~~~c~~~~~~l~--~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 5 DASGVCDGRSRSFT--SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp CTTSEEECTTSCCS--SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCceEECCCCccc--cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 33444677777774 5666543 489999999999998888899999999999999999998888999999999999
Q ss_pred eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCccc-CCC-CCCCCCCCEEEccCCcCCCcch-hhhhccCCCCEE
Q 047797 321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP-IPD-LGRFLSLKVLKLGENHLNGTIN-KSLSHLFKLETL 397 (927)
Q Consensus 321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 397 (927)
++++|.+++..+..++.++ +|++|++++|.+++. .|. ++++++|++|++++|.+.+.+| ..+.++++|++|
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLS------SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCT------TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred ECCCCccCccCHHHhccCC------CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 9999999999888899888 999999999998863 344 8899999999999998544444 578888999999
Q ss_pred ecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCC--C-hhhhcCccccEEEccC
Q 047797 398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHF--P-NWLQTQNQLISLDISN 474 (927)
Q Consensus 398 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~-~~l~~~~~L~~L~Ls~ 474 (927)
++++|++++.+|. .+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. + .....+++|+.|++++
T Consensus 154 ~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 154 EIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred eccCCcccccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 9999988877666 5788888888888888775443333344667777777777766532 1 1223456777777777
Q ss_pred CccCCCccchHHh---hccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC--
Q 047797 475 IGISDTIPDWFWD---LSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-- 549 (927)
Q Consensus 475 n~l~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-- 549 (927)
|.+.+..+..+.. ..++|+.+++++|.+.+...-. ......+....+++.|++.++.+..
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~---------------~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN---------------PSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---------------CCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred cccchhHHHHHHHHhhhhcccccccccccccccccccc---------------ccchhhhhhhcccccccccccccchhh
Confidence 7766554444332 2235566666666554321100 0000112235567777777776554
Q ss_pred ----CCcccccCCCCCEEEccCccccccCCCcc-cccCcccEEEcccccccccCCc---cccCCCCCCEEecCCCcCCCC
Q 047797 550 ----LPDCWLNFNSLSILNLANNRFSGKIPDSM-GFLHNIQTLSLRNNRLNGELPS---SLKNCSKLRVLDLRKNALFGE 621 (927)
Q Consensus 550 ----lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~ 621 (927)
++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|. .+..+++|++|++++|++++.
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence 2223345678999999999987 566655 5789999999999999876643 367889999999999998543
Q ss_pred CC--hhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797 622 VP--TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699 (927)
Q Consensus 622 ~p--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 699 (927)
.+ ..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+
T Consensus 377 ~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~------------------------ 429 (549)
T 2z81_A 377 QKTGEILL-TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI------------------------ 429 (549)
T ss_dssp HHHHHHGG-GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS------------------------
T ss_pred ccchhhhh-cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh------------------------
Confidence 22 2343 7899999999999998 678888899999999999999873 33222
Q ss_pred ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 779 (927)
.+.|+.||+++|++++.+ .++++|++|+|++|+++ .+|. ...+++|
T Consensus 430 ----------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 430 ----------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp ----------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred ----------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence 124599999999998854 57899999999999999 5665 5779999
Q ss_pred CeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797 780 DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821 (927)
Q Consensus 780 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 821 (927)
++|||++|++++.+|..+..+++|++|++++|++.|.||...
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence 999999999999999999999999999999999999999533
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-46 Score=443.33 Aligned_cols=495 Identities=21% Similarity=0.208 Sum_probs=321.5
Q ss_pred CCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhccc
Q 047797 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR 267 (927)
Q Consensus 188 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~ 267 (927)
+++++|++++|.+++.. +..+.++++|++|++++|.+++..+ ..+.++ ++|++|++++|.+++ ..|..+..+.
T Consensus 28 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~~l~- 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIED--GAYQSL-SHLSTLILTGNPIQS-LALGAFSGLS- 100 (570)
T ss_dssp SSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECTTCCCCEECT--TTTTTC-TTCCEEECTTCCCCE-ECTTTTTTCT-
T ss_pred ccccEEEccCCccCccC--hhHhhCCCCceEEECCCCcCCccCc--ccccCc-hhCCEEeCcCCcCCc-cCHhhhcCcc-
Confidence 35666666666665532 2345666666666666666666554 334444 666666666666643 2223334444
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCC-cCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEG-GIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~ 346 (927)
+|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+. +
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~ 174 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------Q 174 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH------T
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh------c
Confidence 66666666666665444456666666666666666654 2456666666666666666666655555555555 4
Q ss_pred c----cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCC
Q 047797 347 L----EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 420 (927)
Q Consensus 347 L----~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 420 (927)
| +.|++++|.+.+..+. +... +|++|++++|.... ..+..+..+++++.+.+....+.. ..+
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~-- 242 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EGN-- 242 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------CSS--
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC---------chh--
Confidence 4 5555666655555554 3322 55555555553321 233344444444444433221110 000
Q ss_pred EEEccCCcceecccCCccccc--ccceeecccc-cCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeec
Q 047797 421 MLFLADNSLTLKLSHDWVPAF--QLKWLSLASC-KMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL 497 (927)
Q Consensus 421 ~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 497 (927)
+.......+..+. .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+|..+
T Consensus 243 --------l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~------------ 301 (570)
T 2z63_A 243 --------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS------------ 301 (570)
T ss_dssp --------CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC------------
T ss_pred --------hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh------------
Confidence 1111111121111 2344444444 344445555555555555555555554 233333
Q ss_pred ccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccC--
Q 047797 498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKI-- 574 (927)
Q Consensus 498 s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~-- 574 (927)
... +++.+++++|.+.......+++|+.|++++|.+.+ .+. ..+++|++|++++|.+++..
T Consensus 302 -------------~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 302 -------------YNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp -------------SCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred -------------ccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 223 44444444444442222235667777777777776 333 67889999999999988654
Q ss_pred CCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCC
Q 047797 575 PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL 654 (927)
Q Consensus 575 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 654 (927)
+..+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..|......+++|++|++++|.+.+..|..+.++
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 66788899999999999999866554 88999999999999999776664333479999999999999999999999999
Q ss_pred CCCCEEEccccccc-cccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeE
Q 047797 655 AFIQVLDLSLNNIS-GKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKY 733 (927)
Q Consensus 655 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 733 (927)
++|++|++++|+++ +.+|..+..++. |+.
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~--------------------------------------------------L~~ 474 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRN--------------------------------------------------LTF 474 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTT--------------------------------------------------CCE
T ss_pred CcCcEEECcCCcCccccchhhhhcccC--------------------------------------------------CCE
Confidence 99999999999997 567766665544 499
Q ss_pred EEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCc
Q 047797 734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS 795 (927)
Q Consensus 734 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 795 (927)
|++++|++++.+|..|.++++|++|++++|++++.+|..+.++++|+.|++++|++++..|.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999999999999999999999999888999999999999999999987764
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-45 Score=440.51 Aligned_cols=283 Identities=23% Similarity=0.195 Sum_probs=236.4
Q ss_pred cccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCcc
Q 047797 490 IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNR 569 (927)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 569 (927)
.+++.+.+.++.+....+ +.....++.+++.+|.+.+..+.....++.+++..|.+...+. ...+++|+.|++++|.
T Consensus 306 ~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNG 382 (635)
T ss_dssp TTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSC
T ss_pred cccccccccccccccccc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc-cccccccccchhhccc
Confidence 466777777766654332 2345678888888888887777778889999999998877543 4578999999999998
Q ss_pred ccc--cCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceec
Q 047797 570 FSG--KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647 (927)
Q Consensus 570 l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 647 (927)
+.. ..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++++|......+...+..+++++.++++.|.+.+..
T Consensus 383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 383 LSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp CBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 863 455667778899999999998874 45568889999999999998877776665557999999999999999999
Q ss_pred CccccCCCCCCEEEcccccccc-ccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccc
Q 047797 648 PFQLCHLAFIQVLDLSLNNISG-KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKS 726 (927)
Q Consensus 648 ~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (927)
+..+..+++|+.|++++|++.+ ..|..|..++
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~----------------------------------------------- 494 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----------------------------------------------- 494 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhcc-----------------------------------------------
Confidence 9999999999999999998543 4555555544
Q ss_pred cccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCC-CCCCe
Q 047797 727 TLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL-SGLSV 805 (927)
Q Consensus 727 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~ 805 (927)
+|++|||++|++++.+|..|.++++|++|+|++|+|++.+|..|.++++|++|||++|+|++..|..+..+ ++|++
T Consensus 495 ---~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 495 ---NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp ---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred ---ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred EeCcCCcCcccCCCCCcCCCC
Q 047797 806 LDLSYNSLSGKIPLGTQLQSF 826 (927)
Q Consensus 806 L~ls~N~l~~~~p~~~~~~~~ 826 (927)
|++++|+|.|.|...++.+|+
T Consensus 572 L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 572 LNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp EECTTCCBCCSGGGHHHHHHH
T ss_pred EEeeCCCCcccCCcHHHHHHH
Confidence 999999999999865544444
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6e-45 Score=428.56 Aligned_cols=490 Identities=19% Similarity=0.198 Sum_probs=341.4
Q ss_pred CccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCC
Q 047797 69 CCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSC 148 (927)
Q Consensus 69 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~ 148 (927)
.|.|.|+ |+.. + ..++ ++|+.+. ++|++|||++|.+++. .|..++++++|++|++++
T Consensus 3 ~C~~~~~-c~~~----------~--------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~ 59 (549)
T 2z81_A 3 SCDASGV-CDGR----------S--------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKS 59 (549)
T ss_dssp EECTTSE-EECT----------T--------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTT
T ss_pred cCCCCce-EECC----------C--------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCC
Confidence 4999998 8532 2 2233 4555443 7899999999998875 677889999999999999
Q ss_pred CCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCC
Q 047797 149 GTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228 (927)
Q Consensus 149 n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 228 (927)
|.+.+..|..|+++++|++|++++|.+ ++. .+..++++++|++|++++|.+++
T Consensus 60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l-------------------------~~~--~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 60 SRINTIEGDAFYSLGSLEHLDLSDNHL-------------------------SSL--SSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCC-------------------------CSC--CHHHHTTCTTCCEEECTTCCCSS
T ss_pred CCcCccChhhccccccCCEEECCCCcc-------------------------Ccc--CHHHhccCCCCcEEECCCCcccc
Confidence 988887777777777777777755544 221 12334445555555555544443
Q ss_pred CCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcc-hhhhcCCCCCEEEccCCcCCCcC
Q 047797 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP-EAFQHMVSLRLLSLASNELEGGI 307 (927)
Q Consensus 229 ~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~ 307 (927)
. ..|..+..+. +|++|++++|.+.+.+| ..|+++++|++|++++|++++..
T Consensus 113 ~---------------------------~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 113 L---------------------------GVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp S---------------------------CSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred c---------------------------chhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 2 2222233333 55566666555333333 46777777777777777777777
Q ss_pred cccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccC----CCCCCCCCCCEEEccCCcCCCc
Q 047797 308 PKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI----PDLGRFLSLKVLKLGENHLNGT 383 (927)
Q Consensus 308 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~ 383 (927)
|..+..+++|++|++++|.+.......+..++ +|++|++++|.+++.. +....+++|+.|++++|.+++.
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILS------SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT------TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcc------cccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 77777788888888887777644443445566 8888888888887642 2245678899999999988765
Q ss_pred chhh----hhccCCCCEEecCCcccccccC-----hhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCC
Q 047797 384 INKS----LSHLFKLETLSLDGNSFTGVIS-----ETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG 454 (927)
Q Consensus 384 ~~~~----l~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~ 454 (927)
.+.. +..+++|+.+++++|.+.+... ...+..+++|+.|++.++.+..... .
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-------------------~ 299 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-------------------F 299 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG-------------------S
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh-------------------c
Confidence 4443 4567788888888888765311 0123456677777777665442210 0
Q ss_pred CCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC---CccccCCCCcEEeccCCccCCCC-
Q 047797 455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP---DLSVLKSDDIVIDISSNNFDGPI- 530 (927)
Q Consensus 455 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~~~~l~~l~l~~n~~~~~~- 530 (927)
...+..+...++|++|++++|.+. .+|..++..+++|++|++++|++++.+| ..+..+++|++|++++|++++..
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 112233344556666666666664 4555555455567777777776665543 22445667777777777776532
Q ss_pred ----CCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCC
Q 047797 531 ----PPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCS 606 (927)
Q Consensus 531 ----~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 606 (927)
...+++|++|++++|+++.+|..+..+++|++|++++|.+++ +|..+ .++|++|++++|++++.. ..++
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~ 451 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLP 451 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCT
T ss_pred chhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCC
Confidence 234678999999999999999999999999999999999984 44433 268999999999998753 5789
Q ss_pred CCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797 607 KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672 (927)
Q Consensus 607 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 672 (927)
+|++|++++|+++ .+|.. . .+++|++|++++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 452 ~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999995 78874 3 69999999999999999989899999999999999999998776
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=430.57 Aligned_cols=458 Identities=21% Similarity=0.183 Sum_probs=313.4
Q ss_pred cEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCC
Q 047797 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323 (927)
Q Consensus 244 ~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 323 (927)
+++|+++|.++ .+|..++ ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc--ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 46777777775 4555443 367777777777776666677777777777777777776666667777777777777
Q ss_pred CCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCCc
Q 047797 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGN 402 (927)
Q Consensus 324 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n 402 (927)
+|++++ +|.. .+++|++|++++|.+++ .+|..++++++|++|++++|
T Consensus 78 ~N~l~~-lp~~-------------------------------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 78 HNKLVK-ISCH-------------------------------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp SSCCCE-EECC-------------------------------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred CCceee-cCcc-------------------------------ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 666652 2211 34455666666666554 34555666666666666666
Q ss_pred ccccccChhhhhcCCCC--CEEEccCCcc--eecccCCccccc-ccceeecccccCCCCCC-hhhhcCccccEEEccCCc
Q 047797 403 SFTGVISETFFSNMSNL--QMLFLADNSL--TLKLSHDWVPAF-QLKWLSLASCKMGPHFP-NWLQTQNQLISLDISNIG 476 (927)
Q Consensus 403 ~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~Ls~n~ 476 (927)
++++ ..+..+++| ++|++++|.+ .+..+..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|.
T Consensus 126 ~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 126 HLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp SCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred ccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 6543 124455555 6666666655 444443333322 22234455555443333 245566777777777765
Q ss_pred -------cCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCC-CCCCCceEeCcCCCCC
Q 047797 477 -------ISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP-LPSNSTFLNLSKNKFS 548 (927)
Q Consensus 477 -------l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~L~~L~L~~n~l~ 548 (927)
+.+.+| .+. ..++|+.|++++|.+++..+... .+. ...+|++|++++|+++
T Consensus 202 ~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~l~~~~~~~~-------------------~~~~~~~~L~~L~l~~n~l~ 260 (520)
T 2z7x_B 202 EDNKCSYFLSILA-KLQ-TNPKLSNLTLNNIETTWNSFIRI-------------------LQLVWHTTVWYFSISNVKLQ 260 (520)
T ss_dssp STTTTHHHHHHHH-GGG-GCTTCCEEEEEEEEEEHHHHHHH-------------------HHHHHTSSCSEEEEEEEEEE
T ss_pred cccccceeecchh-hhc-cccchhhccccccccCHHHHHHH-------------------HHHhhhCcccEEEeeccccc
Confidence 333333 221 22355555555554443211100 000 0235677777777777
Q ss_pred C-CCccc-----ccCCCCCEEEccCccccccCC-Cccccc---CcccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797 549 G-LPDCW-----LNFNSLSILNLANNRFSGKIP-DSMGFL---HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618 (927)
Q Consensus 549 ~-lp~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 618 (927)
+ +|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++
T Consensus 261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 261 GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCcc
Confidence 4 77766 7888899999999988 455 444444 67999999999887432 126789999999999999
Q ss_pred CCCCChhhhhcCccCcEEEccCcccce--ecCccccCCCCCCEEEccccccccccchh-hccccccccccCCCCcccccc
Q 047797 619 FGEVPTCVGGSLQNLIILRLKSNNFHG--NIPFQLCHLAFIQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLAN 695 (927)
Q Consensus 619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~ 695 (927)
++.+|..+. .+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..
T Consensus 337 ~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~------------------ 397 (520)
T 2z7x_B 337 TDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW------------------ 397 (520)
T ss_dssp CTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC------------------
T ss_pred Chhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc------------------
Confidence 888888876 79999999999999987 56678999999999999999999756643 433
Q ss_pred ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC
Q 047797 696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ 775 (927)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 775 (927)
++.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..
T Consensus 398 --------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 398 --------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp --------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred --------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 34559999999999998887765 79999999999999 77888889
Q ss_pred CCCCCeEeCCCCcCcccCCcc-ccCCCCCCeEeCcCCcCcccCCCCCc
Q 047797 776 LKSLDFLDLSRNHFSGNIPSS-LSLLSGLSVLDLSYNSLSGKIPLGTQ 822 (927)
Q Consensus 776 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~ 822 (927)
+++|++|++++|+++. +|.. +..+++|++|++++|+++|.|+..+.
T Consensus 443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 9999999999999995 5554 99999999999999999999886443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-44 Score=431.36 Aligned_cols=446 Identities=20% Similarity=0.268 Sum_probs=213.5
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEc-cCCcCCCcCcccccCC-CCCc-----EE---------e-CCCCCCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSL-ASNELEGGIPKFFGNM-CSLN-----QL---------Y-LPRNKLSGQ 330 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l-~~L~-----~L---------~-L~~n~l~~~ 330 (927)
+++.|+|++|.+.|.+|+.++++++|++|+| ++|.+.|..|...... ..+. .+ . .....+.+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 6888888888888888888888888888888 7777665533211000 0000 00 0 000011111
Q ss_pred hhHHHhhccCC-----CcCCCccEEEccC--CCCcccCCC-CCCCCCCCEEEccCCcCCC-----------------cch
Q 047797 331 LSELIQNLSSG-----CTVNSLEGLCLYA--NDITGPIPD-LGRFLSLKVLKLGENHLNG-----------------TIN 385 (927)
Q Consensus 331 ~~~~l~~l~~~-----~~~~~L~~L~L~~--n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-----------------~~~ 385 (927)
.+..+...+.. .....++.+.+.. |.+++ +|. ++++++|++|+|++|.+++ .+|
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 11111110000 0001222222222 44444 333 5555555555555555554 244
Q ss_pred hhhh--ccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCc-cee-cccCCcccc-------cccceeecccccCC
Q 047797 386 KSLS--HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS-LTL-KLSHDWVPA-------FQLKWLSLASCKMG 454 (927)
Q Consensus 386 ~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~-------~~L~~L~L~~~~~~ 454 (927)
..++ ++++|++|+|++|++.+.+|. .+.++++|++|++++|+ +++ ..|..+..+ ++|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 4444 555555555555555555553 35555555555555554 444 333333332 36666666666666
Q ss_pred CCCCh--hhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCC
Q 047797 455 PHFPN--WLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP 532 (927)
Q Consensus 455 ~~~~~--~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 532 (927)
.+|. .+.++++|++|++++|.++ .+| .+ ..+++|+.|++++|+++ .+|..+..+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~-~~L~~L~~L~Ls~N~l~-~lp~~l~~l------------------- 617 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF-GTNVKLTDLKLDYNQIE-EIPEDFCAF------------------- 617 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC-CTTSEESEEECCSSCCS-CCCTTSCEE-------------------
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hh-cCCCcceEEECcCCccc-cchHHHhhc-------------------
Confidence 6666 7888888888888888776 555 22 22234444444444443 222221111
Q ss_pred CCCC-CceEeCcCCCCCCCCcccccCC--CCCEEEccCccccccCCCcc---c--ccCcccEEEcccccccccCCcc-cc
Q 047797 533 LPSN-STFLNLSKNKFSGLPDCWLNFN--SLSILNLANNRFSGKIPDSM---G--FLHNIQTLSLRNNRLNGELPSS-LK 603 (927)
Q Consensus 533 ~~~~-L~~L~L~~n~l~~lp~~~~~l~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~-~~ 603 (927)
++ |+.|++++|+++.+|..+..++ +|+.|++++|.+.+.+|... . .+++|+.|++++|+++ .+|.. +.
T Consensus 618 --~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~ 694 (876)
T 4ecn_A 618 --TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA 694 (876)
T ss_dssp --CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH
T ss_pred --cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc
Confidence 12 3334444444444443333332 24455555554444333211 1 1224444444444444 22222 22
Q ss_pred CCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhc--ccccc
Q 047797 604 NCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS--NFSMM 681 (927)
Q Consensus 604 ~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~l 681 (927)
.+++|+.|+|++|++. .+|..++.... ..+.++++|+.|+|++|+++ .+|..+. .+
T Consensus 695 ~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l--- 752 (876)
T 4ecn_A 695 TGSPISTIILSNNLMT-SIPENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL--- 752 (876)
T ss_dssp TTCCCSEEECCSCCCS-CCCTTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC---
T ss_pred cCCCCCEEECCCCcCC-ccChHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccC---
Confidence 4444444444444443 34433321110 00001124555555555554 3333332 22
Q ss_pred ccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecc
Q 047797 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLS 761 (927)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls 761 (927)
++|+.|+|++|++++ +|..+.++++|+.|+|+
T Consensus 753 -----------------------------------------------~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 753 -----------------------------------------------PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp -----------------------------------------------TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred -----------------------------------------------CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 222555555555554 44455555555555554
Q ss_pred c------ccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797 762 R------NNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 762 ~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
+ |++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.||+++|++..
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 3 556666666666666666666666666 45666544 466666666666543
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-45 Score=434.43 Aligned_cols=320 Identities=18% Similarity=0.254 Sum_probs=217.6
Q ss_pred cCCCCCEEEccCCcceecccCCcccccccceeeccccc-CCC-CCChhhhcC------ccccEEEccCCccCCCccc--h
Q 047797 415 NMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK-MGP-HFPNWLQTQ------NQLISLDISNIGISDTIPD--W 484 (927)
Q Consensus 415 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~-~~~-~~~~~l~~~------~~L~~L~Ls~n~l~~~~~~--~ 484 (927)
++++|++|++++|.+.+..|..+..+++|++|++++|. +.+ .+|..+..+ ++|++|++++|.++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 44444444444444444444444444444444444444 443 444444443 56666666666665 4554 3
Q ss_pred HHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCC-CCEE
Q 047797 485 FWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNS-LSIL 563 (927)
Q Consensus 485 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~-L~~L 563 (927)
+.. +++|++|++++|+++|.+| .+..++ +|++|++++|+++.+|..+..+++ |++|
T Consensus 326 l~~-l~~L~~L~L~~N~l~g~ip-~~~~l~---------------------~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 326 LQK-MKKLGMLECLYNQLEGKLP-AFGSEI---------------------KLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp HTT-CTTCCEEECCSCCCEEECC-CCEEEE---------------------EESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred hcc-CCCCCEEeCcCCcCccchh-hhCCCC---------------------CCCEEECCCCccccccHhhhhhcccCcEE
Confidence 332 2355666666665555555 322222 345555555555566666777777 7777
Q ss_pred EccCccccccCCCcccccC--cccEEEcccccccccCCcccc-------CCCCCCEEecCCCcCCCCCChhhhhcCccCc
Q 047797 564 NLANNRFSGKIPDSMGFLH--NIQTLSLRNNRLNGELPSSLK-------NCSKLRVLDLRKNALFGEVPTCVGGSLQNLI 634 (927)
Q Consensus 564 ~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~ 634 (927)
++++|.++ .+|..+..++ +|++|++++|++++..|..+. .+++|++|++++|++. .+|..++..+++|+
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS 460 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC
Confidence 77777777 5666666544 777788888877777777776 6677888888888875 66666654577888
Q ss_pred EEEccCcccceecCccc-cC-------CCCCCEEEccccccccccchhhc--cccccccccCCCCccccccccccccccc
Q 047797 635 ILRLKSNNFHGNIPFQL-CH-------LAFIQVLDLSLNNISGKIPKCFS--NFSMMIQEKSSNPIIGLANEILVVPGYI 704 (927)
Q Consensus 635 ~L~L~~n~l~~~~~~~l-~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 704 (927)
+|++++|+++ .+|... .. +++|++|++++|+++ .+|..+. .+
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l-------------------------- 512 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL-------------------------- 512 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC--------------------------
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC--------------------------
Confidence 8888888887 444432 22 238889999998888 5665554 43
Q ss_pred eeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEec------ccccccccCCccccCCCC
Q 047797 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNL------SRNNLTGLIPPKIGQLKS 778 (927)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~ 778 (927)
++|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..++++++
T Consensus 513 ------------------------~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 513 ------------------------PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp ------------------------TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ------------------------CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 344889999999988 7888888999999998 568899999999999999
Q ss_pred CCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797 779 LDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK 816 (927)
Q Consensus 779 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 816 (927)
|++|||++|++ +.+|..+. ++|++||+++|++.+.
T Consensus 568 L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 568 LTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 99999999999 68888876 7999999999998864
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.4e-42 Score=412.14 Aligned_cols=524 Identities=19% Similarity=0.186 Sum_probs=349.4
Q ss_pred ccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccc
Q 047797 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERL 184 (927)
Q Consensus 105 ~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l 184 (927)
++|+.+. +.+++|||++|.|++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|+|++|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l--------- 112 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------- 112 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---------
Confidence 3554432 4678888888888774 456788888888888888887766666666665555555544332
Q ss_pred cCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhh
Q 047797 185 SHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFN 264 (927)
Q Consensus 185 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~ 264 (927)
+. .++ ..+.++ +
T Consensus 113 ----------------~~--------------------------l~~--~~f~~L-~----------------------- 124 (635)
T 4g8a_A 113 ----------------QS--------------------------LAL--GAFSGL-S----------------------- 124 (635)
T ss_dssp ----------------CE--------------------------ECG--GGGTTC-T-----------------------
T ss_pred ----------------CC--------------------------CCH--HHhcCC-C-----------------------
Confidence 11 111 111112 2
Q ss_pred cccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCc-CcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCc
Q 047797 265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG-IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCT 343 (927)
Q Consensus 265 ~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~ 343 (927)
+|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+...
T Consensus 125 ---~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l-- 199 (635)
T 4g8a_A 125 ---SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-- 199 (635)
T ss_dssp ---TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC--
T ss_pred ---CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh--
Confidence 444444444444444444455566666666666665542 35556666666666666666666655555554410
Q ss_pred CCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCCcccccc-----cChhhhhcCC
Q 047797 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGV-----ISETFFSNMS 417 (927)
Q Consensus 344 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~l~ 417 (927)
......++++.|.+....+.......++.+++.+|.... ..+..+..+..++...+..+..... .....+..+.
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 002335666666666555554444456677777775543 2334466666666655543322110 1111122233
Q ss_pred CCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeec
Q 047797 418 NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL 497 (927)
Q Consensus 418 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 497 (927)
.+...++..+..... ....+..+....+++.+++.++.+....+. .....++.|++
T Consensus 280 ~l~~~~l~~~~~~~~---------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~L~~L~l 335 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYY---------------------LDGIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLEL 335 (635)
T ss_dssp GSEEEEEEEECCCSC---------------------EEECTTTTGGGTTCSEEEEESCEEEECGGG---GSCCCCSEEEE
T ss_pred chhhhhhhhhhhccc---------------------ccchhhhhhhhccccccccccccccccccc---ccchhhhhhhc
Confidence 333333322211100 011223344556666677666665443321 12246777777
Q ss_pred ccccccCCCCCccccCCCCcEEeccCCccCCCCCCC-CCCCceEeCcCCCCCC---CCcccccCCCCCEEEccCcccccc
Q 047797 498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL-PSNSTFLNLSKNKFSG---LPDCWLNFNSLSILNLANNRFSGK 573 (927)
Q Consensus 498 s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~l~~~ 573 (927)
.+|.+.+..+. ....++.+++..|......+.. +++|+.+++++|.+.. .+..+..+.+|++++++.|.+..
T Consensus 336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~- 411 (635)
T 4g8a_A 336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT- 411 (635)
T ss_dssp ESCEESSCCCC---BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred ccccccCcCcc---cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence 77766544332 3456777777777766544433 6789999999999875 56677788999999999999885
Q ss_pred CCCcccccCcccEEEcccccccccCC-ccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccc-ceecCccc
Q 047797 574 IPDSMGFLHNIQTLSLRNNRLNGELP-SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF-HGNIPFQL 651 (927)
Q Consensus 574 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l 651 (927)
.+..+..+++|+.+++++|+.....+ ..|..+++++.+++++|.+.+..|..+. .+++|++|++++|++ .+..|..+
T Consensus 412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCC
T ss_pred ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhh
Confidence 45668889999999999988775544 5678999999999999999777776665 799999999999985 45678889
Q ss_pred cCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccce
Q 047797 652 CHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFV 731 (927)
Q Consensus 652 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 731 (927)
..+++|++|+|++|++++..|..|.+++.|
T Consensus 491 ~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L-------------------------------------------------- 520 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------------------------------------------------- 520 (635)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------------------------
T ss_pred hhccccCEEECCCCccCCcChHHHcCCCCC--------------------------------------------------
Confidence 999999999999999999888888876655
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC-CCCCeEeCCCCcCccc
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL-KSLDFLDLSRNHFSGN 792 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ 792 (927)
++|+|++|+|++.+|..|.++++|++|+|++|+|++.+|..+..+ ++|++|+|++|+++..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999999999999999999999998 6899999999999853
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=411.64 Aligned_cols=461 Identities=19% Similarity=0.203 Sum_probs=350.1
Q ss_pred CEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEE
Q 047797 217 KTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296 (927)
Q Consensus 217 ~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 296 (927)
++|++++|.++.++.. + .++|++|++++|.+++ ..|..+..+. +|++|++++|++++..|..|+++++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~---~---~~~L~~L~Ls~n~i~~-~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD---L---SQKTTILNISQNYISE-LWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCS---C---CTTCSEEECCSSCCCC-CCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccccccc---c---cccccEEECCCCcccc-cChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEE
Confidence 5899999999987653 2 2899999999999976 4456676776 99999999999998889999999999999
Q ss_pred EccCCcCCCcCcccccCCCCCcEEeCCCCCCCC-chhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCC--CEE
Q 047797 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-QLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSL--KVL 373 (927)
Q Consensus 297 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L--~~L 373 (927)
++++|+++. +|.. .+++|++|++++|.+++ .+|..++.++ +|++|++++|.+++ ..+..+++| ++|
T Consensus 75 ~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 75 DLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp ECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCC------cceEEEecCcccch--hhccccccceeeEE
Confidence 999999994 5655 89999999999999987 4678888888 99999999998876 235666677 889
Q ss_pred EccCCcC--CCcchhhhhccC-CCCEEecCCcccccccChhhhhcCCCCCEEEccCCc-------ceecccCCccccccc
Q 047797 374 KLGENHL--NGTINKSLSHLF-KLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS-------LTLKLSHDWVPAFQL 443 (927)
Q Consensus 374 ~Ls~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L 443 (927)
++++|.+ .+..|..+..+. +...+++++|++.+.++...+.++++|+.+++++|. +.+.
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------- 212 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI----------- 212 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH-----------
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc-----------
Confidence 9998888 677777766654 233567778887777776667777777777777765 3222
Q ss_pred ceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhh--ccccceeecccccccCCCCCccccCCCCcEEec
Q 047797 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL--SIELFFLNLSNNHISGKLPDLSVLKSDDIVIDI 521 (927)
Q Consensus 444 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l 521 (927)
++ .+..+++|+.|++++|.+.+..+..+... .++|++|++++|+++|.+|..+....
T Consensus 213 -------------~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~------- 271 (520)
T 2z7x_B 213 -------------LA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS------- 271 (520)
T ss_dssp -------------HH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC-------
T ss_pred -------------hh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc-------
Confidence 22 45667777777777777665433333221 24788888888888877776541110
Q ss_pred cCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccC---CCCCEEEccCccccccCCCcccccCcccEEEccccccccc
Q 047797 522 SSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNF---NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597 (927)
Q Consensus 522 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 597 (927)
...+.+|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.
T Consensus 272 ---------~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 272 ---------GTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp ---------SCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred ---------cccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence 01133455666666666 555 344333 57888888888876432 125678888888888888887
Q ss_pred CCccccCCCCCCEEecCCCcCCC--CCChhhhhcCccCcEEEccCcccceecCcc-ccCCCCCCEEEccccccccccchh
Q 047797 598 LPSSLKNCSKLRVLDLRKNALFG--EVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKC 674 (927)
Q Consensus 598 ~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~~ 674 (927)
.|..+..+++|++|++++|++.+ .+|..+. .+++|++|++++|++.+.+|.. +..+++|++|++++|++++.+|..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 88888888888888888888864 4455555 6888999999999988756654 778899999999999998766654
Q ss_pred hccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC
Q 047797 675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754 (927)
Q Consensus 675 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 754 (927)
+. +.|+.||+++|+++ .+|..+.++++
T Consensus 419 l~----------------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~ 445 (520)
T 2z7x_B 419 LP----------------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEA 445 (520)
T ss_dssp CC----------------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred hc----------------------------------------------------ccCCEEECCCCccc-ccchhhhcCCC
Confidence 42 23589999999998 67777789999
Q ss_pred CCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCC
Q 047797 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794 (927)
Q Consensus 755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 794 (927)
|++|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999999996444449999999999999999987544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.6e-43 Score=411.87 Aligned_cols=488 Identities=18% Similarity=0.175 Sum_probs=342.5
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
..+++++++|++++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.+++ +|
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L 102 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ------DL 102 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT------TC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC------CC
Confidence 45889999999985 666554 8999999999999988888999999999999999999988888888888 99
Q ss_pred cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCc-chhhhhccCCCCEEecCCcccccccChhhhhcCCCC--CEEEc
Q 047797 348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT-INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNL--QMLFL 424 (927)
Q Consensus 348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L 424 (927)
++|++++|.++...+. .+++|++|++++|++++. .|..|+++++|++|++++|++++. .+..+++| ++|++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEe
Confidence 9999999998854443 788999999999998863 467889999999999999988742 35556666 88888
Q ss_pred cCCcc--eecccCCccccc-ccceeecccccCCCCCCh-hhhcCccccEEEccCCccCC-CccchH--Hhhccccceeec
Q 047797 425 ADNSL--TLKLSHDWVPAF-QLKWLSLASCKMGPHFPN-WLQTQNQLISLDISNIGISD-TIPDWF--WDLSIELFFLNL 497 (927)
Q Consensus 425 ~~n~l--~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~-~l~~~~~L~~L~Ls~n~l~~-~~~~~~--~~~~~~L~~L~L 497 (927)
++|++ ++..+..+..+. +.-.+++++|.+.+..+. .+..+++|+.+++++|+..- .++..+ ....+.|+.+++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 88888 665555554432 122456666666554443 34456677777777764210 011100 112235555555
Q ss_pred ccccccCCCCCccccCCCCcEEeccCCccCCCCCC-CCCCCceEeCcCCCCCC-CCccc-----ccCCCCCEEEccCccc
Q 047797 498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP-LPSNSTFLNLSKNKFSG-LPDCW-----LNFNSLSILNLANNRF 570 (927)
Q Consensus 498 s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~L~~L~L~~n~l~~-lp~~~-----~~l~~L~~L~Ls~n~l 570 (927)
+++.+.+... .+..+. ...+|++|++++|++++ +|..+ .+++.|+.++++.+.+
T Consensus 257 ~~~~l~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~ 317 (562)
T 3a79_B 257 QHIETTWKCS-------------------VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317 (562)
T ss_dssp EEEEECHHHH-------------------HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred cCCcCcHHHH-------------------HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence 5544432110 000000 01255666666666664 55554 4455555555555555
Q ss_pred cccCC-Ccccc---cCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccce-
Q 047797 571 SGKIP-DSMGF---LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG- 645 (927)
Q Consensus 571 ~~~~~-~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~- 645 (927)
.+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+. .+++|++|++++|++++
T Consensus 318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 318 --LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp --SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBT
T ss_pred --ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCc
Confidence 233 22222 256888888888875332 125778888999999988877787776 68889999999998886
Q ss_pred -ecCccccCCCCCCEEEccccccccccchh-hccccccccccCCCCccccccccccccccceeeeecceeEEeeeccccc
Q 047797 646 -NIPFQLCHLAFIQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHE 723 (927)
Q Consensus 646 -~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (927)
.+|..+..+++|++|++++|++++.+|.. +..
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~---------------------------------------------- 426 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW---------------------------------------------- 426 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC----------------------------------------------
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcC----------------------------------------------
Confidence 34567888999999999999998755543 333
Q ss_pred ccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcc-ccCCCC
Q 047797 724 YKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS-LSLLSG 802 (927)
Q Consensus 724 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 802 (927)
++.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++
T Consensus 427 ----l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~ 498 (562)
T 3a79_B 427 ----AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTS 498 (562)
T ss_dssp ----CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTT
T ss_pred ----cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCC
Confidence 34459999999999988776654 79999999999999 677777799999999999999995 5655 999999
Q ss_pred CCeEeCcCCcCcccCCCCCcCC-CCcccc-cCCCCCCCCCCCCCCCCC
Q 047797 803 LSVLDLSYNSLSGKIPLGTQLQ-SFNASV-YAGNLELCGLPLPNKCAD 848 (927)
Q Consensus 803 L~~L~ls~N~l~~~~p~~~~~~-~~~~~~-~~~n~~lc~~~~~~~C~~ 848 (927)
|++|++++|++.|.||....++ +..... ...+..-|++|....|..
T Consensus 499 L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp CCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred CCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 9999999999999999654433 221111 111223357777788866
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-40 Score=390.69 Aligned_cols=439 Identities=20% Similarity=0.218 Sum_probs=255.6
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
+|++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|+++. +|.. .++ +|
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~------~L 123 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMA------SL 123 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCT------TC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccc------cC
Confidence 44444444444444444444444444444444444444444444444444444444444442 2211 222 44
Q ss_pred cEEEccCCCCcccC-CC-CCCCCCCCEEEccCCcCCCcchhhhhccCCC--CEEecCCccc--ccccChhhhhcCC-CCC
Q 047797 348 EGLCLYANDITGPI-PD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKL--ETLSLDGNSF--TGVISETFFSNMS-NLQ 420 (927)
Q Consensus 348 ~~L~L~~n~l~~~~-~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~ 420 (927)
++|++++|.+++.. |. ++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|. .+..+. ..-
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l 199 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVL 199 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcceE
Confidence 44444444444322 22 44444444444444444432 22233333 4444444444 333332 122222 011
Q ss_pred EEEccCCcceeccc-CCcccccccceeecccccCC----CCCChhhhcCccccEEEccCCccCCCccchHHh--hccccc
Q 047797 421 MLFLADNSLTLKLS-HDWVPAFQLKWLSLASCKMG----PHFPNWLQTQNQLISLDISNIGISDTIPDWFWD--LSIELF 493 (927)
Q Consensus 421 ~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~~~~~----~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~ 493 (927)
.+++++|.+.+..+ ..+..+.+|+.+++++|... ......+..+++|+.++++++.+.+.....+.. ...+|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 23444444333211 12233445555555554210 011234566778888888877765432222111 113677
Q ss_pred eeecccccccCCCCCccccC--CCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccc---cCCCCCEEEccC
Q 047797 494 FLNLSNNHISGKLPDLSVLK--SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWL---NFNSLSILNLAN 567 (927)
Q Consensus 494 ~L~Ls~n~l~~~~~~~~~~~--~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~---~l~~L~~L~Ls~ 567 (927)
+|++++|.++|.+|...... .. +..|+.++++.+.+ .+|. .+. ...+|++|++++
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~------------------L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETA------------------LKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCS------------------CCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEES
T ss_pred EEEEeccEeeccccchhhhccccc------------------chheehhhccccee-ecChhhhhhhhccCcceEEEccC
Confidence 78887777777766543111 11 12233334444444 4452 222 235788888888
Q ss_pred ccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCC--CChhhhhcCccCcEEEccCcccce
Q 047797 568 NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE--VPTCVGGSLQNLIILRLKSNNFHG 645 (927)
Q Consensus 568 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~l~~L~~L~L~~n~l~~ 645 (927)
|.+.... ....+++|++|++++|++++..|..+.++++|++|++++|++.+. +|..+. .+++|++|++++|++++
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBS
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCC
Confidence 8875322 125778889999999988888888888889999999999988542 233444 68899999999999987
Q ss_pred ecCc-cccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccc
Q 047797 646 NIPF-QLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEY 724 (927)
Q Consensus 646 ~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (927)
.+|. .+..+++|++|++++|++++.+|..+.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~------------------------------------------------ 449 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP------------------------------------------------ 449 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC------------------------------------------------
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc------------------------------------------------
Confidence 5554 478889999999999999876665442
Q ss_pred cccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCC
Q 047797 725 KSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794 (927)
Q Consensus 725 ~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 794 (927)
++|+.|||++|+++ .+|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 450 ----~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 ----PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ----TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ----CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 23589999999997 467667799999999999999995444449999999999999999997654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-39 Score=369.22 Aligned_cols=372 Identities=20% Similarity=0.190 Sum_probs=238.1
Q ss_pred CccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcc-hhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEE
Q 047797 346 SLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTI-NKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLF 423 (927)
Q Consensus 346 ~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 423 (927)
+|++|++++|.+++..|. ++++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|. .|.++++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCEEe
Confidence 555555555555554444 555555555555555554332 33455555555555555555433333 345555555555
Q ss_pred ccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeeccccccc
Q 047797 424 LADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503 (927)
Q Consensus 424 L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 503 (927)
+++|.+++..+.. ..+..+++|++|++++|.+.+..|..++..+++|++|++++|+++
T Consensus 110 L~~n~l~~~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQCNLDGAVLSG----------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTSCCBTHHHHS----------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCCCccccCc----------------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 5555554322111 114445555555555555554444443333344444444444444
Q ss_pred CCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc---------ccccCCCCCEEEccCccccccC
Q 047797 504 GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD---------CWLNFNSLSILNLANNRFSGKI 574 (927)
Q Consensus 504 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~---------~~~~l~~L~~L~Ls~n~l~~~~ 574 (927)
+..+..+.... ..+++.|++++|.+.+++. .+..+++|++|++++|.+++..
T Consensus 168 ~~~~~~l~~l~-------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 168 SICEEDLLNFQ-------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp CCCTTTSGGGT-------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred ccChhhhhccc-------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 44333222110 0123444444444444321 1234466777777777776666
Q ss_pred CCccccc---CcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhh-hcCccCcEEEccCcccceecCcc
Q 047797 575 PDSMGFL---HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG-GSLQNLIILRLKSNNFHGNIPFQ 650 (927)
Q Consensus 575 ~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~ 650 (927)
|..+... ++|+.|++++|.+.+... ..+.+.+..+..+. ...++|++|++++|.+.+..|..
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred hhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 6555443 667777777766543211 11122111111111 12478999999999999999999
Q ss_pred ccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccc
Q 047797 651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGF 730 (927)
Q Consensus 651 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 730 (927)
+..+++|++|++++|++++..|..|.+++.|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------------- 325 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHL------------------------------------------------- 325 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------------------------
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccC-------------------------------------------------
Confidence 9999999999999999998888777765554
Q ss_pred eeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY 810 (927)
Q Consensus 731 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 810 (927)
+.|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++++
T Consensus 326 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 326 -LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp -CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence 9999999999999999999999999999999999999999999999999999999999987777889999999999999
Q ss_pred CcCcccCCCCCcC
Q 047797 811 NSLSGKIPLGTQL 823 (927)
Q Consensus 811 N~l~~~~p~~~~~ 823 (927)
|+++|.||....+
T Consensus 405 N~l~~~~~~~~~l 417 (455)
T 3v47_A 405 NPWDCSCPRIDYL 417 (455)
T ss_dssp SCBCCCTTTTHHH
T ss_pred CCcccCCCcchHH
Confidence 9999999964433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-40 Score=372.69 Aligned_cols=400 Identities=24% Similarity=0.255 Sum_probs=217.3
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
.|++|++++|.+ +.+|++++++++|++|++++|++.+.+|..++++++|+.+++.+|.. . ++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~------~l 73 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R------QA 73 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H------TC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c------CC
Confidence 677777777777 57777777777777777777777777777777776665554443310 1 55
Q ss_pred cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797 348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427 (927)
Q Consensus 348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 427 (927)
++|++++|.+++... + .++|++|++++|.+++ +|.. .++|++|++++|++++ ++. ..++|++|++++|
T Consensus 74 ~~L~l~~~~l~~lp~-~--~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n 141 (454)
T 1jl5_A 74 HELELNNLGLSSLPE-L--PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNN 141 (454)
T ss_dssp SEEECTTSCCSCCCS-C--CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSS
T ss_pred CEEEecCCccccCCC-C--cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCC
Confidence 666666666554222 1 2456666666666664 3322 2556666666666553 221 0145555555555
Q ss_pred cceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC
Q 047797 428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP 507 (927)
Q Consensus 428 ~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 507 (927)
++++ +| .+..+++|++|++++|++++ +|... .+|++|++++|++++ +|
T Consensus 142 ~l~~-------------------------lp-~~~~l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~ 189 (454)
T 1jl5_A 142 QLEK-------------------------LP-ELQNSSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP 189 (454)
T ss_dssp CCSS-------------------------CC-CCTTCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC
T ss_pred CCCC-------------------------Cc-ccCCCCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc
Confidence 5543 22 13334444444444444433 22211 256666666666655 33
Q ss_pred CccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEE
Q 047797 508 DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587 (927)
Q Consensus 508 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 587 (927)
.+..+++++.+++++|++.+ +|..+.+|++|++++|+++.+|. +..+++|++|++++|++++ +|.. +++|++|
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L 262 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEAL 262 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEE
T ss_pred -cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEE
Confidence 24566667777777777665 45556688888888888888874 7788888888888888875 4442 3788888
Q ss_pred EcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCC-CCCCEEEccccc
Q 047797 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL-AFIQVLDLSLNN 666 (927)
Q Consensus 588 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~N~ 666 (927)
++++|++++ +|.. .++|++|++++|++++ +|. ..++|++|++++|++++. + .+ ++|++|++++|+
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNK 328 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSC
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCc
Confidence 888888885 4443 3778888888888854 221 135788888888888752 2 23 478888888888
Q ss_pred cccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCc
Q 047797 667 ISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746 (927)
Q Consensus 667 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 746 (927)
+++ +|..+ ++|+.|++++|++++ +|
T Consensus 329 l~~-lp~~~-----------------------------------------------------~~L~~L~L~~N~l~~-lp 353 (454)
T 1jl5_A 329 LIE-LPALP-----------------------------------------------------PRLERLIASFNHLAE-VP 353 (454)
T ss_dssp CSC-CCCCC-----------------------------------------------------TTCCEEECCSSCCSC-CC
T ss_pred ccc-ccccC-----------------------------------------------------CcCCEEECCCCcccc-cc
Confidence 875 44321 234788888888875 45
Q ss_pred cccccccCCCEEecccccccc--cCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc--cCCC
Q 047797 747 EEITDLVGLTALNLSRNNLTG--LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG--KIPL 819 (927)
Q Consensus 747 ~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~ 819 (927)
. .+++|++|++++|++++ .+|.+++.+ +.|.+.+.+|.. +++|++||+++|++++ .+|.
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 4 46788888888888887 566655432 345666666653 3678888888888887 6774
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-39 Score=368.78 Aligned_cols=430 Identities=23% Similarity=0.280 Sum_probs=215.5
Q ss_pred ccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCC
Q 047797 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHL 187 (927)
Q Consensus 108 ~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l 187 (927)
+.-.+.++|++|++++|.+ +. +|..++++++|++|++++|.+.+.+|..++++++|+++++++|..
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------ 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred ccccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence 3444568999999999999 43 999999999999999999999999999999999888777754431
Q ss_pred CCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhccc
Q 047797 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR 267 (927)
Q Consensus 188 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~ 267 (927)
.++++|++++|.+++.+.+ .++|++|++++|.+++.+.. .++|++|++++|++++ ++. .++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~~-------~~~L~~L~l~~n~l~~--l~~----~~~ 131 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPEL-------PQSLKSLLVDNNNLKA--LSD----LPP 131 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCCC-------CTTCCEEECCSSCCSC--CCS----CCT
T ss_pred cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCccccc-------cCCCcEEECCCCccCc--ccC----CCC
Confidence 4567777777777664332 25677777777777664321 1667777777776653 221 113
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
+|++|++++|++++ +| +|+++++|++|++++|++++ +|..+ ++|++|++++|++++. | .++.++ +|
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~------~L 197 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLP------FL 197 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-C-CCTTCT------TC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-c-cccCCC------CC
Confidence 66677777776664 44 46666667777776666664 33322 3566666666666542 2 244444 55
Q ss_pred cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797 348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427 (927)
Q Consensus 348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 427 (927)
++|++++|.+++. |.. .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|++|++++|
T Consensus 198 ~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 198 TAIYADNNSLKKL-PDL--PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDN 267 (454)
T ss_dssp CEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSS
T ss_pred CEEECCCCcCCcC-CCC--cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCC
Confidence 5555555555542 221 135555555555555 333 25555555555555555543 222 1245555555555
Q ss_pred cceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC
Q 047797 428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP 507 (927)
Q Consensus 428 ~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 507 (927)
++++ +|.. .++|++|++++|.+++. |. ..++|++|++++|++++. +
T Consensus 268 ~l~~-------------------------l~~~---~~~L~~L~ls~N~l~~l-~~----~~~~L~~L~l~~N~l~~i-~ 313 (454)
T 1jl5_A 268 YLTD-------------------------LPEL---PQSLTFLDVSENIFSGL-SE----LPPNLYYLNASSNEIRSL-C 313 (454)
T ss_dssp CCSC-------------------------CCCC---CTTCCEEECCSSCCSEE-SC----CCTTCCEEECCSSCCSEE-C
T ss_pred cccc-------------------------cCcc---cCcCCEEECcCCccCcc-cC----cCCcCCEEECcCCcCCcc-c
Confidence 4443 2221 25666666766666541 11 114677777777777652 1
Q ss_pred CccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccc--cCCCcccccCccc
Q 047797 508 DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG--KIPDSMGFLHNIQ 585 (927)
Q Consensus 508 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~ 585 (927)
. ..++++.+++++|++.+ +|..+++|++|++++|+++++|. .+++|++|++++|++++ .+|..+..
T Consensus 314 ~---~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~----- 381 (454)
T 1jl5_A 314 D---LPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED----- 381 (454)
T ss_dssp C---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred C---CcCcCCEEECCCCcccc-ccccCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence 1 12467778888887776 56667888888888888888887 46788889998888887 56655442
Q ss_pred EEEcccccccccCCccccCCCCCCEEecCCCcCCC--CCChhhhhcCccCcEEEccCcccceecCccccC
Q 047797 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFG--EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCH 653 (927)
Q Consensus 586 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 653 (927)
++.|.+.+.+|.. +++|++|++++|++++ .+|. +++.|.+.+|.+.+.++.+...
T Consensus 382 ---L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 382 ---LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp ---EECCC--------------------------------------------------------------
T ss_pred ---hhhcccccccccc---cCcCCEEECCCCcCCccccchh-------hHhheeCcCcccCCccccCHHH
Confidence 2346666666653 4789999999999976 4553 4667788888888776655443
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.4e-40 Score=353.74 Aligned_cols=294 Identities=26% Similarity=0.426 Sum_probs=206.9
Q ss_pred CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCcc--ccceeecCCC--CCEEEEECCCCchhhhhcccccc--ccC
Q 047797 34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCK--WRGVRCSNTT--GHVKVLNLQTSDHEFARRKFLKG--KIS 107 (927)
Q Consensus 34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~g--~~~ 107 (927)
.|.++|++||++||+++.||. .+++|. .+++||. |.||+|+..+ ++|++|+|++ +.+.| .+|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~~ 69 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIP 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCcccC
Confidence 699999999999999998886 789997 4678998 9999997655 8999999999 88998 899
Q ss_pred ccccCCCCCCeeeCCC-CCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccC
Q 047797 108 PALLKLRGLRHLDLSK-NDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSH 186 (927)
Q Consensus 108 ~~l~~l~~L~~L~Ls~-n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~ 186 (927)
+.+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+.+.+|..|+++++|++|++++|.+
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l----------- 137 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL----------- 137 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-----------
T ss_pred hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-----------
Confidence 9999999999999995 888876 898899999999999999998888887776666666666644332
Q ss_pred CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcc
Q 047797 187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS 266 (927)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~ 266 (927)
+ +..| ..+..+ ++|++|++++|++++ .+|..+..+.
T Consensus 138 --------------~--------------------------~~~p--~~~~~l-~~L~~L~L~~N~l~~-~~p~~l~~l~ 173 (313)
T 1ogq_A 138 --------------S--------------------------GTLP--PSISSL-PNLVGITFDGNRISG-AIPDSYGSFS 173 (313)
T ss_dssp --------------E--------------------------SCCC--GGGGGC-TTCCEEECCSSCCEE-ECCGGGGCCC
T ss_pred --------------C--------------------------CcCC--hHHhcC-CCCCeEECcCCcccC-cCCHHHhhhh
Confidence 2 1112 223333 455555555555544 4455555544
Q ss_pred cCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797 267 RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346 (927)
Q Consensus 267 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~ 346 (927)
++|++|++++|++++.+|..+..++ |++|++++|++++..|..|..+++|++|++++|.+++.
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 236 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD---------------- 236 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB----------------
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee----------------
Confidence 4566666666666666666666655 66666666666655555555555555555555555433
Q ss_pred ccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797 347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426 (927)
Q Consensus 347 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 426 (927)
+|.+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|. ...+++|+.+++++
T Consensus 237 --------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 237 --------------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYAN 300 (313)
T ss_dssp --------------GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCS
T ss_pred --------------cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--CccccccChHHhcC
Confidence 33344556677777777777766777777777777777777777766665 25666666666666
Q ss_pred Cc
Q 047797 427 NS 428 (927)
Q Consensus 427 n~ 428 (927)
|+
T Consensus 301 N~ 302 (313)
T 1ogq_A 301 NK 302 (313)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-37 Score=355.77 Aligned_cols=378 Identities=23% Similarity=0.228 Sum_probs=268.0
Q ss_pred ccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCCCcEEe
Q 047797 243 IETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLNQLY 321 (927)
Q Consensus 243 L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 321 (927)
-+.++.+++.++ .+|. .+++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+
T Consensus 12 ~~~~~c~~~~l~--~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 12 GYNAICINRGLH--QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp TTEEECCSSCCS--SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ccccCcCCCCcc--cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 345677777764 4444 3347788888888777766777777777777777777776433 45677777777777
Q ss_pred CCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCC--C-CCCCCCCCEEEccCCcCCCcchhh-hhccCCCCEE
Q 047797 322 LPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP--D-LGRFLSLKVLKLGENHLNGTINKS-LSHLFKLETL 397 (927)
Q Consensus 322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~--~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L 397 (927)
+++|++++..|..+++++ +|++|++++|.+++..+ . +..+++|++|++++|.+++..|.. +.++++|++|
T Consensus 86 Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLA------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp CTTCTTCEECTTTTTTCT------TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CCCCccCccChhhccCcc------cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 777776666555555555 55555555555554221 1 445555555555555555444433 4455555555
Q ss_pred ecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccc--cccceeecccccCCCCCChh--------hhcCccc
Q 047797 398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA--FQLKWLSLASCKMGPHFPNW--------LQTQNQL 467 (927)
Q Consensus 398 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~--------l~~~~~L 467 (927)
++++|+++ +..+..+..+ .+++.|++++|.+....+.+ +..+++|
T Consensus 160 ~L~~n~l~-------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 160 DLTFNKVK-------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ECTTCCBS-------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred eCCCCccc-------------------------ccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 55555554 4444333333 34555555555554433332 2345788
Q ss_pred cEEEccCCccCCCccchHHhhc--cccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCC-----CCCCCceE
Q 047797 468 ISLDISNIGISDTIPDWFWDLS--IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP-----LPSNSTFL 540 (927)
Q Consensus 468 ~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-----~~~~L~~L 540 (927)
++|++++|.+.+..|..+.... .+|+.|++++|...+..... +.+.+..+. ...+|++|
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH--------------TNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC--------------CSSCCCCTTTTGGGTTSCCCEE
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccch--------------hhhccCcccccccccccCceEE
Confidence 8888888888887777776542 57888888888765432211 111111111 13689999
Q ss_pred eCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797 541 NLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF 619 (927)
Q Consensus 541 ~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 619 (927)
++++|++++ .|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus 281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 999999999 7888999999999999999999999999999999999999999999998999999999999999999998
Q ss_pred CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797 620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672 (927)
Q Consensus 620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 672 (927)
+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 361 ~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 361 ALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77787776 79999999999999998777778999999999999999998877
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.1e-35 Score=334.06 Aligned_cols=197 Identities=20% Similarity=0.181 Sum_probs=132.7
Q ss_pred cccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCc
Q 047797 102 LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSL 181 (927)
Q Consensus 102 l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~ 181 (927)
..+..+..++++++|++||+++|.+++ +| .++.+++|++|++++|.+.+. | ++++++|++|++++|.+...+
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--
Confidence 344445678889999999999999987 45 688999999999999998874 4 888899999999888765542
Q ss_pred ccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchh
Q 047797 182 ERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPW 261 (927)
Q Consensus 182 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~ 261 (927)
++++++|++|++++|++++.+ ++.+++|++|++++|.+++.. +.++ ++|++|++++|...+ .+ .
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~-----l~~l-~~L~~L~l~~n~~~~-~~--~ 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID-----VSHN-TQLTELDCHLNKKIT-KL--D 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC-----CTTC-TTCCEEECTTCSCCC-CC--C
T ss_pred --cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec-----cccC-CcCCEEECCCCCccc-cc--c
Confidence 777888888888888877631 667777777777777777642 3444 667777777664433 22 1
Q ss_pred HhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCC
Q 047797 262 LFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG 329 (927)
Q Consensus 262 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 329 (927)
+..+. +|++|++++|++++. | ++.+++|++|++++|++++. .+..+++|++|++++|++++
T Consensus 166 ~~~l~-~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 166 VTPQT-QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CTTCT-TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred cccCC-cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 23333 566666666665542 2 55555566666666555543 24455555555555555544
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=341.45 Aligned_cols=239 Identities=17% Similarity=0.179 Sum_probs=175.4
Q ss_pred cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCc
Q 047797 552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ 631 (927)
Q Consensus 552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 631 (927)
..+..+++|++|++++|.+.+..+..|.++++|+.|++++|++++..+..|.++++|+.|++++|.+.+..+..+. .++
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~ 200 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK-RLY 200 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC-SCT
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc-cCc
Confidence 3445556666666666666666666666677777777777777665555666777777777777776544444443 567
Q ss_pred cCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecc
Q 047797 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD 711 (927)
Q Consensus 632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (927)
+|++|++++|++.+.+|.......+|++|++++|++++..+..+.+++.
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------------- 249 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------------------------------- 249 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-------------------------------
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-------------------------------
Confidence 7777777777766666666666668888888888887544445555443
Q ss_pred eeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797 712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791 (927)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 791 (927)
|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus 250 -------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 250 -------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp -------------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred -------------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 4888888888888888888889999999999999998888899999999999999999998
Q ss_pred cCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCC
Q 047797 792 NIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLP 841 (927)
Q Consensus 792 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 841 (927)
..+..|..+++|++|++++|++.|.|+..+.+.+.....+.++...|+.|
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred eCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 77778888899999999999999988765544444444566666667554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.1e-35 Score=332.32 Aligned_cols=366 Identities=21% Similarity=0.188 Sum_probs=256.0
Q ss_pred CcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCC
Q 047797 277 NHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356 (927)
Q Consensus 277 n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~ 356 (927)
....+..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.++ +|++|++++|.
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~------~L~~L~Ls~N~ 96 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNT------NLTYLACDSNK 96 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCT------TCSEEECCSSC
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCC------CCCEEECcCCC
Confidence 344445566788899999999999998865 4 688889999999999988875 2 55555 78888888887
Q ss_pred CcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCC
Q 047797 357 ITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHD 436 (927)
Q Consensus 357 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 436 (927)
+++. + ++.+++|++|++++|++++. + ++.+++|++|++++|++++ ++ ++.+++|++|++++|+..+.. .
T Consensus 97 l~~~-~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 97 LTNL-D-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp CSCC-C-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--C
T ss_pred Ccee-e-cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--c
Confidence 7764 2 77777888888888877764 3 6777777888887777775 32 566777777777777433222 2
Q ss_pred cccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCC
Q 047797 437 WVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDD 516 (927)
Q Consensus 437 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l 516 (927)
+..+++|++|++++|++++. | ...+++|+.|++++|++++
T Consensus 166 ------------------------~~~l~~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~------------ 205 (457)
T 3bz5_A 166 ------------------------VTPQTQLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNITK------------ 205 (457)
T ss_dssp ------------------------CTTCTTCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCCSC------------
T ss_pred ------------------------cccCCcCCEEECCCCcccee-c---cccCCCCCEEECcCCcCCe------------
Confidence 33344455555555544431 1 1112244444444444332
Q ss_pred cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccc
Q 047797 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG 596 (927)
Q Consensus 517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 596 (927)
.....+++|++|++++|+++++| +..+++|++|++++|++++.. ++.+++|+.|++++|
T Consensus 206 ------------~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---- 264 (457)
T 3bz5_A 206 ------------LDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---- 264 (457)
T ss_dssp ------------CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC----
T ss_pred ------------eccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC----
Confidence 21122456778888888888877 778888999999999888653 455678888887765
Q ss_pred cCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhc
Q 047797 597 ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS 676 (927)
Q Consensus 597 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 676 (927)
+|+.|++++|++.+.+|. . .+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 265 ----------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------- 317 (457)
T 3bz5_A 265 ----------DLLEIDLTHNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------- 317 (457)
T ss_dssp ----------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred ----------CCCEEECCCCccCCcccc--c-ccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence 456778888888777763 2 578888888888887777664 3445555555554
Q ss_pred cccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCC
Q 047797 677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT 756 (927)
Q Consensus 677 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~ 756 (927)
+.|+.|++++|++++. + ++++++|+
T Consensus 318 ----------------------------------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~ 342 (457)
T 3bz5_A 318 ----------------------------------------------------PKLVYLYLNNTELTEL-D--VSHNTKLK 342 (457)
T ss_dssp ----------------------------------------------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred ----------------------------------------------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence 2348899999999884 3 88899999
Q ss_pred EEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797 757 ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG 820 (927)
Q Consensus 757 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 820 (927)
.|++++|++++. +.|+.|++++|.++|. ..+..|..+++++|+++|.+|..
T Consensus 343 ~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 343 SLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred EEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999999998863 5677788999999876 24456788899999999999864
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-34 Score=328.46 Aligned_cols=214 Identities=28% Similarity=0.432 Sum_probs=168.5
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
++|++|++++|.+++++ .+..+++|++|++++|.+.+..| ++.+++|+.|++++|++++. ..+..+++|++|+++
T Consensus 177 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 177 TTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 34555666666665553 36677888888888888876554 66778888888888888753 457788888888888
Q ss_pred CCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA 694 (927)
Q Consensus 615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 694 (927)
+|++.+..| +. .+++|++|++++|.+++..+ +..+++|++|++++|++++..| +..
T Consensus 252 ~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----------------- 307 (466)
T 1o6v_A 252 NNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----------------- 307 (466)
T ss_dssp SSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----------------
T ss_pred CCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----------------
Confidence 888865444 43 68889999999888886544 7788999999999998886443 333
Q ss_pred cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774 (927)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 774 (927)
+++|+.|++++|++++..| +..+++|++|++++|++++. ..+.
T Consensus 308 ---------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 308 ---------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp ---------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred ---------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhc
Confidence 3455899999999988776 78899999999999999876 5788
Q ss_pred CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK 816 (927)
Q Consensus 775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 816 (927)
++++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999999999999998877 88899999999999999873
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8e-34 Score=325.54 Aligned_cols=123 Identities=29% Similarity=0.376 Sum_probs=63.8
Q ss_pred CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616 (927)
Q Consensus 537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 616 (927)
|++|++++|++++++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 223 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 223 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297 (466)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence 444444444444432 34455566666666666554433 5555566666666665554332 555556666666666
Q ss_pred cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669 (927)
Q Consensus 617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 669 (927)
++.+..+ +. .+++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 298 ~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 298 QLEDISP--IS-NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCSCCGG--GG-GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred cccCchh--hc-CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 5543222 22 45555555555555554433 4455555555555555543
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.2e-34 Score=310.00 Aligned_cols=258 Identities=32% Similarity=0.534 Sum_probs=241.8
Q ss_pred CCCceEeCcCCCCCC---CCcccccCCCCCEEEccC-ccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCE
Q 047797 535 SNSTFLNLSKNKFSG---LPDCWLNFNSLSILNLAN-NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRV 610 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 610 (927)
.+++.|++++|++++ +|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468889999999985 889999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCC-CCCEEEccccccccccchhhccccccccccCCCC
Q 047797 611 LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA-FIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNP 689 (927)
Q Consensus 611 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 689 (927)
|++++|++.+.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ +
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999989999887 799999999999999999999999998 999999999999999998887653 3
Q ss_pred ccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccC
Q 047797 690 IIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI 769 (927)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 769 (927)
+.|++++|++++.+|..|.++++|+.|+|++|++++.+
T Consensus 200 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 200 ------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp ------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred ------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 89999999999999999999999999999999999877
Q ss_pred CccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCCCCCC
Q 047797 770 PPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC 846 (927)
Q Consensus 770 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C 846 (927)
|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 66 88899999999999999999999999999999999999999999999888888888899999999998876 57
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=326.05 Aligned_cols=214 Identities=21% Similarity=0.240 Sum_probs=121.3
Q ss_pred cccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccC
Q 047797 554 WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633 (927)
Q Consensus 554 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L 633 (927)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|.... ...+|
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L 226 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNL 226 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccc
Confidence 33444455555555555444334455555555555555555555555555555555555555555555554444 34456
Q ss_pred cEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeeccee
Q 047797 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV 713 (927)
Q Consensus 634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
++|++++|++++..+..+..+++|+.|+|++|++++..+..|.+++.
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------------------------- 273 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR--------------------------------- 273 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT---------------------------------
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc---------------------------------
Confidence 66666666665443345566666666666666666544444443333
Q ss_pred EEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797 714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793 (927)
Q Consensus 714 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 793 (927)
|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++....
T Consensus 274 -----------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 274 -----------------LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp -----------------CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred -----------------CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 366667777766666667777777777777777777666666677777777777777776432
Q ss_pred CccccCCCCCCeEeCcCCcCcccCCC
Q 047797 794 PSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 794 p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
+.. .-......+++.++...|..|.
T Consensus 337 ~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 337 RLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp GGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred chH-hHHhhhhccccCccCceeCCch
Confidence 211 1112233445566666666664
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=306.68 Aligned_cols=332 Identities=19% Similarity=0.206 Sum_probs=197.6
Q ss_pred CCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEE
Q 047797 392 FKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLD 471 (927)
Q Consensus 392 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~ 471 (927)
++++.|++++|.++ .+|...+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44444455444443 33333444455555555555554444444444444444444444444445555555666666666
Q ss_pred ccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC-
Q 047797 472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL- 550 (927)
Q Consensus 472 Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l- 550 (927)
+++|.+++ +|...+...++ |++|++++|+++++
T Consensus 124 L~~n~l~~-l~~~~~~~l~~---------------------------------------------L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 124 LERNDLSS-LPRGIFHNTPK---------------------------------------------LTTLSMSNNNLERIE 157 (390)
T ss_dssp CCSSCCCC-CCTTTTTTCTT---------------------------------------------CCEEECCSSCCCBCC
T ss_pred CCCCccCc-CCHHHhcCCCC---------------------------------------------CcEEECCCCccCccC
Confidence 66665542 22221111223 33333334444332
Q ss_pred CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcC
Q 047797 551 PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSL 630 (927)
Q Consensus 551 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l 630 (927)
|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ...++|++|++++|.+. .+|.. ..
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~ 225 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VN 225 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CC
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeee-ecccc---cc
Confidence 23345555666666666665543 234455666666666655532 23345666666666663 23332 24
Q ss_pred ccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeec
Q 047797 631 QNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYL 710 (927)
Q Consensus 631 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (927)
++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..++.|
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------- 274 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------------------------- 274 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------------------------
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------------------------
Confidence 5677777777776643 456677777777777777776666666554433
Q ss_pred ceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797 711 DNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790 (927)
Q Consensus 711 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 790 (927)
+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 275 ---------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 275 ---------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp ---------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ---------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 777777777766 4555677889999999999988 45677888899999999999998
Q ss_pred ccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCC
Q 047797 791 GNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGL 840 (927)
Q Consensus 791 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 840 (927)
.. | +..+++|++|++++|++.|.+.. ..+..+....+.+++..|+.
T Consensus 332 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 332 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred ee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 54 3 67788999999999999987654 23445555556666666653
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-32 Score=321.58 Aligned_cols=334 Identities=19% Similarity=0.200 Sum_probs=212.2
Q ss_pred cCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEE
Q 047797 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL 470 (927)
Q Consensus 391 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 470 (927)
+.+++.+++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 344555555555554 3343345555555555555555555444444455555555555555555555555666666666
Q ss_pred EccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-
Q 047797 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG- 549 (927)
Q Consensus 471 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~- 549 (927)
++++|.+++..+..+ ..+ ++|++|++++|.+++
T Consensus 129 ~L~~n~l~~l~~~~~-~~l---------------------------------------------~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 129 VLERNDLSSLPRGIF-HNT---------------------------------------------PKLTTLSMSNNNLERI 162 (597)
T ss_dssp ECCSSCCCCCCTTTT-TTC---------------------------------------------TTCCEEECCSSCCCBC
T ss_pred EeeCCCCCCCCHHHh-ccC---------------------------------------------CCCCEEEeeCCcCCCC
Confidence 666665543222111 111 233444444444444
Q ss_pred CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhc
Q 047797 550 LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGS 629 (927)
Q Consensus 550 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 629 (927)
.|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++ +...++|+.|++++|.+. .+|.. .
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~ 230 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---V 230 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECS---C
T ss_pred ChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-ccccc---c
Confidence 233455566666666666666543 14445666666666666653 233456777777777663 33322 2
Q ss_pred CccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeee
Q 047797 630 LQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRY 709 (927)
Q Consensus 630 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (927)
.++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..++.|
T Consensus 231 ~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------- 280 (597)
T 3oja_B 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL---------------------------- 280 (597)
T ss_dssp CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC----------------------------
T ss_pred CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC----------------------------
Confidence 3567777777777765 3567777788888888888777777666655444
Q ss_pred cceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcC
Q 047797 710 LDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789 (927)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 789 (927)
+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++
T Consensus 281 ----------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 281 ----------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp ----------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred ----------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 788888888876 4666677889999999999998 5677888899999999999999
Q ss_pred cccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCC
Q 047797 790 SGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLP 841 (927)
Q Consensus 790 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 841 (927)
++.. +..+++|++|++++|++.|.++. ..+..+....+.++...|+.+
T Consensus 337 ~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 337 VTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 8652 66778999999999999998654 345666667788888888763
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.3e-31 Score=297.92 Aligned_cols=308 Identities=22% Similarity=0.228 Sum_probs=206.5
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
+++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.++ +|
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L 119 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------LL 119 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC------CC
Confidence 444455555544433333345555555555555555544444555555555555555555554444444444 55
Q ss_pred cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797 348 EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426 (927)
Q Consensus 348 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 426 (927)
++|++++|.++...+. +..+++|++|++++|.+++..+..+..+++|++|++++|++++. + +..+++|+.|++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccc
Confidence 5555555555544444 56666777777777777766666677777777777777776643 2 34566666666666
Q ss_pred CcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCC
Q 047797 427 NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL 506 (927)
Q Consensus 427 n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 506 (927)
|.++... ..++|++|++++|.+. ..
T Consensus 196 n~l~~~~-----------------------------~~~~L~~L~l~~n~l~-------------------------~~- 220 (390)
T 3o6n_A 196 NLLSTLA-----------------------------IPIAVEELDASHNSIN-------------------------VV- 220 (390)
T ss_dssp SCCSEEE-----------------------------CCSSCSEEECCSSCCC-------------------------EE-
T ss_pred ccccccC-----------------------------CCCcceEEECCCCeee-------------------------ec-
Confidence 6554311 1123344444444332 11
Q ss_pred CCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccE
Q 047797 507 PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586 (927)
Q Consensus 507 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 586 (927)
....+.+|+.|++++|++++. ..+..+++|++|++++|.+++..|..|..+++|++
T Consensus 221 -----------------------~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 221 -----------------------RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp -----------------------ECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -----------------------cccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 011124577777778877776 46788999999999999999988999999999999
Q ss_pred EEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccc
Q 047797 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN 666 (927)
Q Consensus 587 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 666 (927)
|++++|++++ +|..+..+++|++|++++|++. .+|..+. .+++|++|++++|+++.. + +..+++|+.|++++|+
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSC
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCC
Confidence 9999999985 4556678999999999999995 6777776 689999999999999854 3 6788999999999999
Q ss_pred cccc
Q 047797 667 ISGK 670 (927)
Q Consensus 667 l~~~ 670 (927)
+.+.
T Consensus 351 ~~~~ 354 (390)
T 3o6n_A 351 WDCN 354 (390)
T ss_dssp EEHH
T ss_pred ccch
Confidence 9864
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6e-30 Score=281.84 Aligned_cols=287 Identities=25% Similarity=0.372 Sum_probs=174.3
Q ss_pred ccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCC
Q 047797 110 LLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSS 189 (927)
Q Consensus 110 l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~ 189 (927)
+..+++|++|+++++.+.. +|. ++.+++|++|++++|.+.+..+ ++++++|++|++++|.+.. ++.+.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence 3456677777777777665 333 6667777777777776664332 6677777777776665533 345667777
Q ss_pred CcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCc
Q 047797 190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNI 269 (927)
Q Consensus 190 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L 269 (927)
|++|++++|.+...+. +..+++|++|++++|......+ .+..+ ++|++|++++|.+.+ ++. +..+. +|
T Consensus 112 L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~---~~~~l-~~L~~L~l~~~~~~~--~~~-~~~l~-~L 179 (347)
T 4fmz_A 112 LRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS---PLSNM-TGLNYLTVTESKVKD--VTP-IANLT-DL 179 (347)
T ss_dssp CSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG---GGTTC-TTCCEEECCSSCCCC--CGG-GGGCT-TC
T ss_pred CCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc---chhhC-CCCcEEEecCCCcCC--chh-hccCC-CC
Confidence 7777777777665321 6666777777777764444333 24444 667777777766643 222 33444 66
Q ss_pred cEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccE
Q 047797 270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEG 349 (927)
Q Consensus 270 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~ 349 (927)
++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..++ +|++
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~ 247 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTW 247 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCE
T ss_pred CEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCE
Confidence 677777666664333 6666677777777766665433 5666666677776666665444 44444 6666
Q ss_pred EEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcc
Q 047797 350 LCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429 (927)
Q Consensus 350 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 429 (927)
|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+. .+..+++|++|++++|++
T Consensus 248 L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcc
Confidence 66666666543 3356666666666666666644 3456666666666666666544333 456666666666666665
Q ss_pred eec
Q 047797 430 TLK 432 (927)
Q Consensus 430 ~~~ 432 (927)
++.
T Consensus 324 ~~~ 326 (347)
T 4fmz_A 324 TDI 326 (347)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.8e-30 Score=286.08 Aligned_cols=307 Identities=26% Similarity=0.340 Sum_probs=189.2
Q ss_pred CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCccccccc
Q 047797 364 LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443 (927)
Q Consensus 364 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 443 (927)
+..+++|++|++++|.+... + .+..+++|++|++++|++++ ++. +..+++|++|++++|.++..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~~~----------- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKITDI----------- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC-----------
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCcccCc-----------
Confidence 34566777777777777643 3 36677777777777777763 332 66677777777777665531
Q ss_pred ceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccC
Q 047797 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523 (927)
Q Consensus 444 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~ 523 (927)
..+..+++|++|++++|.+.+..+ ...+
T Consensus 104 ---------------~~~~~l~~L~~L~l~~n~i~~~~~---~~~l---------------------------------- 131 (347)
T 4fmz_A 104 ---------------SALQNLTNLRELYLNEDNISDISP---LANL---------------------------------- 131 (347)
T ss_dssp ---------------GGGTTCTTCSEEECTTSCCCCCGG---GTTC----------------------------------
T ss_pred ---------------hHHcCCCcCCEEECcCCcccCchh---hccC----------------------------------
Confidence 124555566666666665543221 1111
Q ss_pred CccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCcccc
Q 047797 524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLK 603 (927)
Q Consensus 524 n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 603 (927)
++|++|++++|.....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.
T Consensus 132 -----------~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 196 (347)
T 4fmz_A 132 -----------TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196 (347)
T ss_dssp -----------TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GG
T ss_pred -----------CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--cc
Confidence 23333444444322222235556666666666666654332 5666666677776666664332 66
Q ss_pred CCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhcccccccc
Q 047797 604 NCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ 683 (927)
Q Consensus 604 ~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 683 (927)
.+++|+.|++++|.+.+..+ +. .+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~------ 263 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD------ 263 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT------
T ss_pred CCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc------
Confidence 66777777777776643332 33 56777777777777765433 66777777777777776642 12222
Q ss_pred ccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccc
Q 047797 684 EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN 763 (927)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N 763 (927)
+++|+.|++++|++++. ..+..+++|++|++++|
T Consensus 264 --------------------------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 264 --------------------------------------------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred --------------------------------------------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 33457777777777664 34777788888888888
Q ss_pred cccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797 764 NLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 764 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 814 (927)
++++..|..++.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8877777777788888888888888876655 677788888888888764
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8.9e-31 Score=309.45 Aligned_cols=308 Identities=22% Similarity=0.226 Sum_probs=204.7
Q ss_pred CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (927)
+++.+++++|.+....+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+.++ +|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L 125 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------LL 125 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC------CC
Confidence 334444444444433333344455555555555555444444455555555555555555544444444444 55
Q ss_pred cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797 348 EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426 (927)
Q Consensus 348 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 426 (927)
++|++++|.+++.++. |+.+++|++|++++|.+++..|..|+.+++|++|++++|.+++. + +..+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhccc
Confidence 5555555555544444 56666777777777777766666677777777777777777643 2 34566666666666
Q ss_pred CcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCC
Q 047797 427 NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL 506 (927)
Q Consensus 427 n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 506 (927)
|.+.+.. ..++|+.|++++|.+. ..
T Consensus 202 n~l~~l~-----------------------------~~~~L~~L~ls~n~l~-------------------------~~- 226 (597)
T 3oja_B 202 NLLSTLA-----------------------------IPIAVEELDASHNSIN-------------------------VV- 226 (597)
T ss_dssp SCCSEEE-----------------------------CCTTCSEEECCSSCCC-------------------------EE-
T ss_pred Ccccccc-----------------------------CCchhheeeccCCccc-------------------------cc-
Confidence 6554311 1123334444443332 11
Q ss_pred CCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccE
Q 047797 507 PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586 (927)
Q Consensus 507 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 586 (927)
.+..+.+|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|..+++|+.
T Consensus 227 -----------------------~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 227 -----------------------RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp -----------------------ECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -----------------------ccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 111124577777777777774 56888999999999999999999999999999999
Q ss_pred EEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccc
Q 047797 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN 666 (927)
Q Consensus 587 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 666 (927)
|+|++|.+++ +|..+..+++|+.|+|++|++. .+|..+. .+++|++|++++|.+.+.. +..+++|+.|++++|+
T Consensus 283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred EECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence 9999999996 4666778999999999999995 7888776 7999999999999998652 6778999999999999
Q ss_pred cccc
Q 047797 667 ISGK 670 (927)
Q Consensus 667 l~~~ 670 (927)
+.+.
T Consensus 357 ~~~~ 360 (597)
T 3oja_B 357 WDCN 360 (597)
T ss_dssp EEHH
T ss_pred CCCh
Confidence 9864
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.1e-33 Score=318.12 Aligned_cols=134 Identities=21% Similarity=0.151 Sum_probs=77.5
Q ss_pred CceEeCcCCCCCC-----CCcccccCCCCCEEEccCccccccCC-----CcccccCcccEEEccccccccc----CCccc
Q 047797 537 STFLNLSKNKFSG-----LPDCWLNFNSLSILNLANNRFSGKIP-----DSMGFLHNIQTLSLRNNRLNGE----LPSSL 602 (927)
Q Consensus 537 L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~----~~~~~ 602 (927)
|++|++++|.+++ ++..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++. ++..+
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 4444444444444 34556677888888888888765321 1222467777777777777653 45556
Q ss_pred cCCCCCCEEecCCCcCCCCCChhhhh----cCccCcEEEccCccccee----cCccccCCCCCCEEEccccccccc
Q 047797 603 KNCSKLRVLDLRKNALFGEVPTCVGG----SLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGK 670 (927)
Q Consensus 603 ~~l~~L~~L~Ls~N~l~~~~p~~~~~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~ 670 (927)
..+++|++|++++|++.+..+..+.. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 66777777777777764333222221 124666666666666543 344445556666666666655543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.9e-31 Score=288.48 Aligned_cols=282 Identities=17% Similarity=0.188 Sum_probs=183.3
Q ss_pred CCCCHHHHHHHHHhhhcCc-CCCCCcCCCCCC-CCCCCCccccceeec--------CCCCCEEEEECCCCchhhhhcccc
Q 047797 33 TRCIDEEREALLTFKQSLV-DEYGVLSSWGSE-DGKRDCCKWRGVRCS--------NTTGHVKVLNLQTSDHEFARRKFL 102 (927)
Q Consensus 33 ~~~~~~~~~~ll~~k~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~--------~~~~~v~~L~L~~~~~~~~~~~~l 102 (927)
..+..+|++||++||+++. |+.+.+++|... ....++|.|.|+.|. ...++|+.|+|++ +.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------n~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--------VPL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------SCC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------CCc
Confidence 3567889999999999994 777778899410 146789999999994 2346899999988 667
Q ss_pred ccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcc
Q 047797 103 KGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLE 182 (927)
Q Consensus 103 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~ 182 (927)
. .+|+.++++++|++|+|++|.++. +|..++.+++|++|+|++|.+. .+|..++++++|++|++++|+...... .
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p-~ 168 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-E 168 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC-S
T ss_pred h-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC-h
Confidence 6 788888889999999999999883 8888899999999999999888 778888889999999998866533211 1
Q ss_pred cccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhH
Q 047797 183 RLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWL 262 (927)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l 262 (927)
.+.. .+ ....++.+++|++|++++|.++..+ ..+.++ ++|++|++++|.++ .+|+.+
T Consensus 169 ~~~~------~~-----------~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l-~~L~~L~L~~N~l~--~l~~~l 225 (328)
T 4fcg_A 169 PLAS------TD-----------ASGEHQGLVNLQSLRLEWTGIRSLP---ASIANL-QNLKSLKIRNSPLS--ALGPAI 225 (328)
T ss_dssp CSEE------EC------------CCCEEESTTCCEEEEEEECCCCCC---GGGGGC-TTCCEEEEESSCCC--CCCGGG
T ss_pred hHhh------cc-----------chhhhccCCCCCEEECcCCCcCcch---HhhcCC-CCCCEEEccCCCCC--cCchhh
Confidence 1111 00 0011233444455555554444222 123333 55555555555554 234444
Q ss_pred hhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCC
Q 047797 263 FNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC 342 (927)
Q Consensus 263 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 342 (927)
..+. +|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.++
T Consensus 226 ~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~--- 301 (328)
T 4fcg_A 226 HHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP--- 301 (328)
T ss_dssp GGCT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC---
T ss_pred ccCC-CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc---
Confidence 4444 566666666555555555566666666666666666556665666666666666666666666666666555
Q ss_pred cCCCccEEEccCCCC
Q 047797 343 TVNSLEGLCLYANDI 357 (927)
Q Consensus 343 ~~~~L~~L~L~~n~l 357 (927)
+|+.+++..+.+
T Consensus 302 ---~L~~l~l~~~~~ 313 (328)
T 4fcg_A 302 ---ANCIILVPPHLQ 313 (328)
T ss_dssp ---TTCEEECCGGGS
T ss_pred ---CceEEeCCHHHH
Confidence 566666555443
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-32 Score=316.59 Aligned_cols=365 Identities=18% Similarity=0.119 Sum_probs=188.1
Q ss_pred CccEEEccCCCCcccCCC--CCCCCCCCEEEccCCcCCC----cchhhhhccCCCCEEecCCcccccccChhhhhcCC--
Q 047797 346 SLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNG----TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMS-- 417 (927)
Q Consensus 346 ~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-- 417 (927)
+|++|++++|.++..... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+...+..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 566666666666543322 4555666666666666653 23444555566666666666665433333333344
Q ss_pred --CCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhc----cc
Q 047797 418 --NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS----IE 491 (927)
Q Consensus 418 --~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----~~ 491 (927)
+|++|++++|.++.... ..++..+..+++|++|++++|.+++..+..+.... ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp TCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 45555555555442110 12355566677777777777776654444443321 12
Q ss_pred cceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCcccc
Q 047797 492 LFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFS 571 (927)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 571 (927)
|++|++++|.+++.... .++..+..+++|++|++++|.+.
T Consensus 144 L~~L~L~~n~l~~~~~~----------------------------------------~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCE----------------------------------------PLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp CCEEECTTSCCBGGGHH----------------------------------------HHHHHHHHCTTCCEEECCSSBCH
T ss_pred ceEEECCCCCCCHHHHH----------------------------------------HHHHHHhhCCCCCEEECcCCCcc
Confidence 44444433333321100 02233444556666666666555
Q ss_pred ccCCCcccc-----cCcccEEEccccccccc----CCccccCCCCCCEEecCCCcCCCCCC----hhhhhcCccCcEEEc
Q 047797 572 GKIPDSMGF-----LHNIQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNALFGEVP----TCVGGSLQNLIILRL 638 (927)
Q Consensus 572 ~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~~l~~L~~L~L 638 (927)
+..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++.+... ..+...+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 433332221 34566666666665542 34445555666666666665532211 111113556666666
Q ss_pred cCccccee----cCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeE
Q 047797 639 KSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVL 714 (927)
Q Consensus 639 ~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (927)
++|.++.. ++..+..+++|++|++++|.+++..+..+...-
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------------------------- 308 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL----------------------------------- 308 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-----------------------------------
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-----------------------------------
Confidence 66666543 344555566666666666665543333222110
Q ss_pred EeeecccccccccccceeEEEccCCccccc----CccccccccCCCEEecccccccccCCccccC-----CCCCCeEeCC
Q 047797 715 LTWKGSEHEYKSTLGFVKYLDLSSNKLCEA----IPEEITDLVGLTALNLSRNNLTGLIPPKIGQ-----LKSLDFLDLS 785 (927)
Q Consensus 715 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls 785 (927)
....+.|+.|++++|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|++|+++
T Consensus 309 ----------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 309 ----------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp ----------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred ----------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 00112446666666666554 3444555566666666666665544333332 4566666666
Q ss_pred CCcCcc----cCCccccCCCCCCeEeCcCCcCcc
Q 047797 786 RNHFSG----NIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 786 ~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
+|++++ .+|..+..+++|++|++++|++++
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 666664 555556666666666666666654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.5e-29 Score=270.31 Aligned_cols=265 Identities=20% Similarity=0.197 Sum_probs=177.3
Q ss_pred ccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCCCCCCCCcccccCCCCCEEEccC
Q 047797 491 ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLAN 567 (927)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~ 567 (927)
.+++|++++|.+++..+..+..+++|++|++++|.+.+..|.. +++|++|++++|+++.+|..+. ++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 4555555555555544444445555555555555555443332 3466677777777766665544 5777777777
Q ss_pred ccccccCCCcccccCcccEEEcccccccc--cCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccce
Q 047797 568 NRFSGKIPDSMGFLHNIQTLSLRNNRLNG--ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645 (927)
Q Consensus 568 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 645 (927)
|.+++..+..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.+. .+|..+ .++|++|++++|++++
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITK 206 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCE
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCc
Confidence 77776666667777777777777777753 56667777777888888887773 455543 3677888888888777
Q ss_pred ecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeeccccccc
Q 047797 646 NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYK 725 (927)
Q Consensus 646 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (927)
..|..+..+++|++|++++|.+++..+..+..++.
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------------------------------------- 241 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH--------------------------------------------- 241 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT---------------------------------------------
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC---------------------------------------------
Confidence 77777777888888888888777665555554433
Q ss_pred ccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC------CCCCCeEeCCCCcCcc--cCCccc
Q 047797 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ------LKSLDFLDLSRNHFSG--NIPSSL 797 (927)
Q Consensus 726 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~--~~p~~l 797 (927)
|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|
T Consensus 242 -----L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 242 -----LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp -----CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred -----CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 377888888776 46667777788888888888887776666643 3677778888887753 455667
Q ss_pred cCCCCCCeEeCcCCc
Q 047797 798 SLLSGLSVLDLSYNS 812 (927)
Q Consensus 798 ~~l~~L~~L~ls~N~ 812 (927)
..+..++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 777778888887774
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.5e-29 Score=274.69 Aligned_cols=199 Identities=21% Similarity=0.244 Sum_probs=133.3
Q ss_pred CCCCEEEccCccccccCCCcccccCcccEEEccccccc--ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcE
Q 047797 558 NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN--GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635 (927)
Q Consensus 558 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~ 635 (927)
++|++|++++|.+++..+..|..+++|++|++++|.++ +..+..+..+ +|++|++++|++. .+|..+ .++|++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~ 197 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNE 197 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCE
Confidence 45555555555555444444555666666666666554 2445555555 6666777777663 355443 256777
Q ss_pred EEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEE
Q 047797 636 LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL 715 (927)
Q Consensus 636 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (927)
|++++|.+++..+..+..+++|++|++++|++++..+..+..++.
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------------------------- 242 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT----------------------------------- 242 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-----------------------------------
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-----------------------------------
Confidence 777777777666677777777777777777777666555554443
Q ss_pred eeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC------CCCCeEeCCCCcC
Q 047797 716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL------KSLDFLDLSRNHF 789 (927)
Q Consensus 716 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l 789 (927)
|+.|++++|+++ .+|..+.++++|++|++++|++++..+..|... .+|+.|++++|.+
T Consensus 243 ---------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 243 ---------------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp ---------------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ---------------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 377888888876 566678888888888888888887776666553 5688888888888
Q ss_pred c--ccCCccccCCCCCCeEeCcCCc
Q 047797 790 S--GNIPSSLSLLSGLSVLDLSYNS 812 (927)
Q Consensus 790 ~--~~~p~~l~~l~~L~~L~ls~N~ 812 (927)
. +..|..|..+++|+.+++++|+
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 7 5667778888888888888874
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-29 Score=272.28 Aligned_cols=258 Identities=26% Similarity=0.299 Sum_probs=221.6
Q ss_pred cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcc-cccCCCCCEEEccCcccccc--CCCcccccCcccEEEccccc
Q 047797 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC-WLNFNSLSILNLANNRFSGK--IPDSMGFLHNIQTLSLRNNR 593 (927)
Q Consensus 517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~ 593 (927)
+.++.+++.++......++++++|++++|+++.+|.. +.++++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3566666666655555577899999999999998765 68999999999999999843 35677789999999999999
Q ss_pred ccccCCccccCCCCCCEEecCCCcCCCCCC-hhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc-cc
Q 047797 594 LNGELPSSLKNCSKLRVLDLRKNALFGEVP-TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KI 671 (927)
Q Consensus 594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~ 671 (927)
++ .+|..+..+++|++|++++|++.+..+ ..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 98 467779999999999999999965544 3444 79999999999999999999999999999999999999986 46
Q ss_pred chhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccc
Q 047797 672 PKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD 751 (927)
Q Consensus 672 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 751 (927)
|..+..++ +|+.|++++|++++..|..|.+
T Consensus 168 ~~~~~~l~--------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 168 PDIFTELR--------------------------------------------------NLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp CSCCTTCT--------------------------------------------------TCCEEECTTSCCCEECTTTTTT
T ss_pred hhHHhhCc--------------------------------------------------CCCEEECCCCCcCCcCHHHhcC
Confidence 66665544 4499999999999999999999
Q ss_pred ccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCC-CCCeEeCcCCcCcccCCCCCcCCCC
Q 047797 752 LVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS-GLSVLDLSYNSLSGKIPLGTQLQSF 826 (927)
Q Consensus 752 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~ 826 (927)
+++|++|+|++|++++..+..+..+++|++||+++|++++..|..+..++ +|++|++++|+++|.|+......++
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 99999999999999998888899999999999999999999999999984 9999999999999998764444443
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.1e-28 Score=267.43 Aligned_cols=152 Identities=23% Similarity=0.308 Sum_probs=77.4
Q ss_pred CccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEe
Q 047797 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLY 321 (927)
Q Consensus 242 ~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 321 (927)
+++.++++++.++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc--ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4555555555553 3333221 2455555555555544444455555555555555555544444455555555555
Q ss_pred CCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCC
Q 047797 322 LPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401 (927)
Q Consensus 322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 401 (927)
+++|.+ +...+.+. ++|++|++++|.+++..+..+.++++|++|++++
T Consensus 109 L~~n~l------------------------------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 109 ISKNHL------------------------------VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCSSCC------------------------------CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred CCCCcC------------------------------CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 544444 42222222 4666666666666655555566666666666666
Q ss_pred ccccc-ccChhhhhcCCCCCEEEccCCccee
Q 047797 402 NSFTG-VISETFFSNMSNLQMLFLADNSLTL 431 (927)
Q Consensus 402 n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 431 (927)
|.++. .+....+..+ +|++|++++|+++.
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 66642 1222234444 56666666665554
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=9e-31 Score=310.76 Aligned_cols=314 Identities=12% Similarity=0.114 Sum_probs=163.3
Q ss_pred CCccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCC---CCCCCcccc--------
Q 047797 68 DCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFG---GSPVPEFIG-------- 136 (927)
Q Consensus 68 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~---~~~lp~~l~-------- 136 (927)
-|++|.++.+.. . ..+.+.. ......+..+.++++|++|+|+++... +. +|..++
T Consensus 40 vck~W~~~~~~~--~--~~l~~~~---------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~ 105 (592)
T 3ogk_B 40 VCRRWFKIDSET--R--EHVTMAL---------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVT 105 (592)
T ss_dssp SCHHHHHHHHHH--C--CEEEESC---------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHH
T ss_pred HhHHHHHhhhcc--c--cEEEEee---------ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHH
Confidence 456899986531 1 2233332 122333455678899999999886421 11 332222
Q ss_pred ----CCCCCCEEECCCCCCCCCCCccCCCC--CCCcEEecCCCCccCCCCccc-ccCCCCCcEEECCCccCCCCCc--hH
Q 047797 137 ----SLSKLRYLNLSCGTPSSKIPHPFRDL--SGFEYFNVENSNLFSVGSLER-LSHLSSLRHLDLSCINLTKSSD--WF 207 (927)
Q Consensus 137 ----~l~~L~~L~Ls~n~~~~~~p~~l~~l--~~L~~L~Ls~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~--~~ 207 (927)
.+++|++|+|++|.+++..+..+++. .+|++|++++|.......+.. ..++++|++|+|++|.+++... +.
T Consensus 106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred HHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence 57778888887776665555555442 337777776655322211211 1245555555555554433211 22
Q ss_pred HhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCC---CcchhHhhcccCccEEEccCCcCcCCcc
Q 047797 208 QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSS---SVYPWLFNLSRNILHLDLGFNHLQGSIP 284 (927)
Q Consensus 208 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~---~~~~~l~~~~~~L~~L~Ls~n~i~~~~~ 284 (927)
.....+ ++|++|++++|.+++. .++..+..++ +|++|++++|.+.+ ++
T Consensus 186 ~~~~~~---------------------------~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~ 236 (592)
T 3ogk_B 186 ELAQHN---------------------------TSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LV 236 (592)
T ss_dssp HHHHHC---------------------------CCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GH
T ss_pred HHHhcC---------------------------CCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HH
Confidence 223333 5555555555555321 1122222333 66666666666654 55
Q ss_pred hhhhcCCCCCEEEccCCcCC---CcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccC
Q 047797 285 EAFQHMVSLRLLSLASNELE---GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI 361 (927)
Q Consensus 285 ~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~ 361 (927)
..+..+++|++|+++..... ...+..+..+++|+.|+++++. .+.+|..+..++ +|++|++++|.+++..
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~------~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA------QIRKLDLLYALLETED 309 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG------GCCEEEETTCCCCHHH
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcC------CCcEEecCCCcCCHHH
Confidence 66666677777776643222 2233445566666666666542 234455555555 6666666666654332
Q ss_pred C-C-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCC-----------cccccccChhhhhcCCCCCEEEccCCc
Q 047797 362 P-D-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG-----------NSFTGVISETFFSNMSNLQMLFLADNS 428 (927)
Q Consensus 362 ~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~ 428 (927)
. . +..+++|++|+++++...+.++..+..+++|++|++++ |.+++.........+++|++|+++.|.
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 2 1 45666677776663222222333345566777777762 444432222234456666666665555
Q ss_pred cee
Q 047797 429 LTL 431 (927)
Q Consensus 429 l~~ 431 (927)
+++
T Consensus 390 l~~ 392 (592)
T 3ogk_B 390 ITN 392 (592)
T ss_dssp CCH
T ss_pred ccH
Confidence 544
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.4e-28 Score=263.38 Aligned_cols=197 Identities=23% Similarity=0.253 Sum_probs=113.8
Q ss_pred cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL 320 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 320 (927)
.+++.++++++.++ .+|..+ .+++++|++++|++++..+..|+++++|++|++++|++++..|..|.++++|++|
T Consensus 31 c~l~~l~~~~~~l~--~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE--KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC--SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCcc--ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 46777777777764 344432 2367777777777776666667777777777777777776666667777667777
Q ss_pred eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecC
Q 047797 321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLD 400 (927)
Q Consensus 321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 400 (927)
++++|.++.. | ..+. ++|++|++++|.+++..+..+.++++|++|+++
T Consensus 106 ~Ls~n~l~~l-~-----------------------------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 106 YLSKNQLKEL-P-----------------------------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp ECCSSCCSBC-C-----------------------------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred ECCCCcCCcc-C-----------------------------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 7666665521 1 1111 466666777776666666666777777777777
Q ss_pred Cccccc-ccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCcc
Q 047797 401 GNSFTG-VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGI 477 (927)
Q Consensus 401 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l 477 (927)
+|.+.. .+....+..+++|++|++++|.++......+ ++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 776642 1222346667777777777776653221111 3344444444443333344444444444444444433
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.2e-28 Score=262.97 Aligned_cols=249 Identities=21% Similarity=0.164 Sum_probs=206.6
Q ss_pred ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617 (927)
Q Consensus 538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 617 (927)
+.++.+++.++.+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56778888888887654 4688999999999988777888889999999999999988888889999999999999997
Q ss_pred -CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccc
Q 047797 618 -LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE 696 (927)
Q Consensus 618 -l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 696 (927)
+.+..|..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.+++.
T Consensus 92 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------- 154 (285)
T 1ozn_A 92 QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN---------------- 154 (285)
T ss_dssp TCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------
T ss_pred CccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC----------------
Confidence 6444455555 7899999999999999888888899999999999999998766665655444
Q ss_pred cccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC
Q 047797 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL 776 (927)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 776 (927)
|+.|++++|++++..+..|.++++|++|++++|++++..|..+..+
T Consensus 155 ----------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 155 ----------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp ----------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ----------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 4899999999998888889999999999999999999999999999
Q ss_pred CCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCC
Q 047797 777 KSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCG 839 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 839 (927)
++|+.|++++|++++..+..+..+++|++|++++|++.|.++......++.......+...|.
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence 999999999999998777779999999999999999999988755444544433333433343
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-27 Score=272.80 Aligned_cols=253 Identities=23% Similarity=0.229 Sum_probs=221.4
Q ss_pred CCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797 515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593 (927)
Q Consensus 515 ~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 593 (927)
....++.++..++......+.++++|++++|++++ .|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34567777777776555567899999999999999 56789999999999999999999988999999999999999999
Q ss_pred ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcc-cceecCccccCCCCCCEEEccccccccccc
Q 047797 594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN-FHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672 (927)
Q Consensus 594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 672 (927)
+++..+..|..+++|++|+|++|++. .+|...+..+++|++|++++|+ +....+..+.++++|++|++++|++++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 99888888999999999999999995 4554444479999999999955 4444445789999999999999999853 3
Q ss_pred hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc
Q 047797 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL 752 (927)
Q Consensus 673 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 752 (927)
. +.. +++|+.|+|++|++++..|..|.++
T Consensus 213 ~-~~~--------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 213 N-LTP--------------------------------------------------LVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp C-CTT--------------------------------------------------CTTCCEEECTTSCCSEECGGGGTTC
T ss_pred c-ccc--------------------------------------------------cccccEEECcCCcCcccCcccccCc
Confidence 1 222 4456999999999999999999999
Q ss_pred cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG 820 (927)
Q Consensus 753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 820 (927)
++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.|...
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 99999999999999999999999999999999999999888888999999999999999999998864
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.4e-28 Score=263.36 Aligned_cols=226 Identities=22% Similarity=0.316 Sum_probs=203.3
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
..++.|++++|+++.+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5688999999999999999999999999999999999 88999999999999999999999 789999999999999999
Q ss_pred CCcCCCCCChhhhh--------cCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccC
Q 047797 615 KNALFGEVPTCVGG--------SLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKS 686 (927)
Q Consensus 615 ~N~l~~~~p~~~~~--------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~ 686 (927)
+|++.+.+|..+.. .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..++.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~------ 230 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK------ 230 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC------
Confidence 99888999987641 3899999999999998 788889999999999999999985 5555655444
Q ss_pred CCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccccc
Q 047797 687 SNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766 (927)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 766 (927)
|+.|++++|++.+.+|..++++++|++|+|++|++.
T Consensus 231 --------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 231 --------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp --------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred --------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 499999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797 767 GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 767 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 814 (927)
+.+|..++++++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999877554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=269.59 Aligned_cols=254 Identities=22% Similarity=0.210 Sum_probs=221.1
Q ss_pred CCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797 515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593 (927)
Q Consensus 515 ~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 593 (927)
....++.++..++......+.+++.|++++|+++++ +..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 345677777777766666678999999999999994 5789999999999999999998888899999999999999999
Q ss_pred ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccc-ceecCccccCCCCCCEEEccccccccccc
Q 047797 594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF-HGNIPFQLCHLAFIQVLDLSLNNISGKIP 672 (927)
Q Consensus 594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 672 (927)
+++..+..|..+++|++|++++|++.+..+..+. .+++|++|++++|+. ....+..+.++++|++|++++|+++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 9988788899999999999999999544444444 799999999999554 44445578999999999999999983 33
Q ss_pred hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc
Q 047797 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL 752 (927)
Q Consensus 673 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 752 (927)
. +. .+++|+.|||++|++++..|..|.++
T Consensus 202 ~-~~--------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 202 N-LT--------------------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp C-CT--------------------------------------------------TCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred c-cC--------------------------------------------------CCcccCEEECCCCccCccChhhhccC
Confidence 2 22 24456999999999999999999999
Q ss_pred cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821 (927)
Q Consensus 753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 821 (927)
++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++.|.|...+
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 999999999999999999999999999999999999998888889999999999999999999987643
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.3e-29 Score=300.78 Aligned_cols=235 Identities=13% Similarity=0.033 Sum_probs=136.7
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCC-CcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP-DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
.+|+.|+++++....+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 35556666655444466666667777777777777654332 23466777777777733333333444456777777777
Q ss_pred CC-----------CcCCCCCChhhhhcCccCcEEEccCcccceecCccccC-CCCCCEEEcc----ccccccccch-hhc
Q 047797 614 RK-----------NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCH-LAFIQVLDLS----LNNISGKIPK-CFS 676 (927)
Q Consensus 614 s~-----------N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~N~l~~~~p~-~~~ 676 (927)
++ |.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++...+ .+.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 73 44433222222335777777777777777665555544 7777777775 4555532110 010
Q ss_pred cccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC--cccccCcccccc-cc
Q 047797 677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN--KLCEAIPEEITD-LV 753 (927)
Q Consensus 677 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N--~l~~~~p~~~~~-l~ 753 (927)
. ....+++|+.|++++| .+++..+..+.. ++
T Consensus 430 ~----------------------------------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 430 S----------------------------------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp H----------------------------------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred H----------------------------------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 0 0112344577777643 355544444433 67
Q ss_pred CCCEEeccccccccc-CCccccCCCCCCeEeCCCCcCccc-CCccccCCCCCCeEeCcCCcCcc
Q 047797 754 GLTALNLSRNNLTGL-IPPKIGQLKSLDFLDLSRNHFSGN-IPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 754 ~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
+|++|+|++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|++|++++|+++.
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 777777777777652 234446667777777777776544 33334556777777777777654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-28 Score=267.70 Aligned_cols=273 Identities=20% Similarity=0.209 Sum_probs=187.7
Q ss_pred EEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccc
Q 047797 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG 596 (927)
Q Consensus 518 ~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 596 (927)
..+.+++.++......++++++|++++|+++++|. .+.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus 35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 35555555555444445677777777777777544 66777777777777777777666677777777777777777775
Q ss_pred cCCccccCCCCCCEEecCCCcCCCCCCh-hhhhcCccCcEEEccCc-ccceecCccccCCCCCCEEEccccccccccchh
Q 047797 597 ELPSSLKNCSKLRVLDLRKNALFGEVPT-CVGGSLQNLIILRLKSN-NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674 (927)
Q Consensus 597 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 674 (927)
..+..|.++++|++|++++|++. .+|. .....+++|++|++++| .+.+..+..+.++++|++|++++|++++..|..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 55555777777777777777774 4444 22225777777777777 355555666777777777777777777766766
Q ss_pred hcccccccccc-CCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccc---
Q 047797 675 FSNFSMMIQEK-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT--- 750 (927)
Q Consensus 675 ~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~--- 750 (927)
+.+++.+.... ..+.+ ......+...+++|+.|++++|++++..+..+.
T Consensus 194 l~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQH---------------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTCSEEEEEEEECSCS---------------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HhccccCCeecCCCCcc---------------------------ccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 66665552211 00000 011112223466789999999999887665543
Q ss_pred cccCCCEEecccccccc----cCCccccCCCCCCeEeCCCCcCcccCCcc-ccCCCCCCeEeCcCCcCcccCCC
Q 047797 751 DLVGLTALNLSRNNLTG----LIPPKIGQLKSLDFLDLSRNHFSGNIPSS-LSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 751 ~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
....++.++|++|.+++ .+|+.+..+++|++||+++|+++ .+|.. |..+++|++|++++|++.|.||.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 45678888888888876 36778899999999999999999 45555 68999999999999999999884
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.5e-27 Score=250.85 Aligned_cols=252 Identities=22% Similarity=0.268 Sum_probs=216.4
Q ss_pred cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc-c
Q 047797 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR-L 594 (927)
Q Consensus 517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l 594 (927)
..++.+++.++......++++++|++++|++++++ ..+..+++|++|++++|.+++..|..|..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 45677777776554456789999999999999955 678899999999999999999889999999999999999997 8
Q ss_pred cccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchh
Q 047797 595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674 (927)
Q Consensus 595 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 674 (927)
....|..|..+++|++|++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 877789999999999999999999776676665 7999999999999999877778999999999999999998766655
Q ss_pred hccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC
Q 047797 675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754 (927)
Q Consensus 675 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 754 (927)
+..++. |+.|++++|++++..|..|.++++
T Consensus 173 ~~~l~~--------------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 173 FRGLHS--------------------------------------------------LDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp TTTCTT--------------------------------------------------CCEEECCSSCCCEECTTTTTTCTT
T ss_pred hcCccc--------------------------------------------------cCEEECCCCcccccCHhHccCccc
Confidence 665444 499999999999999999999999
Q ss_pred CCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG 820 (927)
Q Consensus 755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 820 (927)
|++|++++|++++..+..+..+++|++|++++|++....+.. .-...++.++.+.|.+.|..|..
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 999999999999887788999999999999999998654422 11133556668899999999863
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.2e-26 Score=250.53 Aligned_cols=275 Identities=20% Similarity=0.237 Sum_probs=215.5
Q ss_pred cEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCC
Q 047797 468 ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKF 547 (927)
Q Consensus 468 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l 547 (927)
+.++.+++.++. +|..+ .+++++|++++|.++...+..+.. +++|++|++++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~---------------------l~~L~~L~L~~n~l 64 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI---PSSATRLELESNKLQSLPHGVFDK---------------------LTQLTKLSLSSNGL 64 (306)
T ss_dssp TEEECCSSCCSS-CCSCC---CTTCCEEECCSSCCCCCCTTTTTT---------------------CTTCSEEECCSSCC
T ss_pred CEEEcCCCCccc-CCCCC---CCCCCEEECCCCccCccCHhHhhc---------------------cccCCEEECCCCcc
Confidence 456666666643 33322 135566666665555322222222 45677888888887
Q ss_pred CCC---CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCC-ccccCCCCCCEEecCCCcCCCCCC
Q 047797 548 SGL---PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP-SSLKNCSKLRVLDLRKNALFGEVP 623 (927)
Q Consensus 548 ~~l---p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p 623 (927)
+.+ |..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|
T Consensus 65 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 65 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp CEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred CcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 753 5677788999999999999984 56678899999999999999987665 678899999999999999977777
Q ss_pred hhhhhcCccCcEEEccCcccce-ecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccc
Q 047797 624 TCVGGSLQNLIILRLKSNNFHG-NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPG 702 (927)
Q Consensus 624 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 702 (927)
..+. .+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..++.|
T Consensus 144 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------- 201 (306)
T 2z66_A 144 GIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------------- 201 (306)
T ss_dssp TTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------
T ss_pred hhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------
Confidence 7666 68999999999999987 678899999999999999999998777777665544
Q ss_pred cceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCC-CCCe
Q 047797 703 YIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK-SLDF 781 (927)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~ 781 (927)
+.|++++|++++..+..+.++++|++|+|++|++++..|..+..++ +|++
T Consensus 202 -----------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 202 -----------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp -----------------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred -----------------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 9999999999998888899999999999999999999999999985 9999
Q ss_pred EeCCCCcCcccCC--ccccCCCCCCeEeCcCCcCcccCCC
Q 047797 782 LDLSRNHFSGNIP--SSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 782 L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
|+|++|++++..+ .....+...+.+.+..+.+.|..|.
T Consensus 253 L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 253 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp EECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred EEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 9999999986532 1122334455667778888888775
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.4e-25 Score=255.83 Aligned_cols=251 Identities=23% Similarity=0.229 Sum_probs=216.4
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
....++.++..++.+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45688999999999997665 6899999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch-hhccccccccccCCCCccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLA 694 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~ 694 (927)
|++++..+..+. .+++|++|++++|++.+..+..+.++++|++|++++|+..+.++. .|.+
T Consensus 133 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~----------------- 194 (452)
T 3zyi_A 133 NWLTVIPSGAFE-YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG----------------- 194 (452)
T ss_dssp SCCSBCCTTTSS-SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-----------------
T ss_pred CcCCccChhhhc-ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-----------------
Confidence 999654444454 799999999999999988888899999999999999654444443 3444
Q ss_pred cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774 (927)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 774 (927)
+++|+.|+|++|++++. | .+..+++|++|+|++|++++..|..|.
T Consensus 195 ---------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 195 ---------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ---------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred ---------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCccccc
Confidence 34559999999999875 4 588999999999999999999999999
Q ss_pred CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC-CcCCCCcccccCCCCCCCCCC
Q 047797 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGLP 841 (927)
Q Consensus 775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 841 (927)
++++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+|+.-|++.
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999999999999999999999999999999654432 234556666788999888754
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=253.63 Aligned_cols=250 Identities=21% Similarity=0.233 Sum_probs=216.5
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
..+.++.++.+++.+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45689999999999998765 6899999999999999889999999999999999999998889999999999999999
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc-hhhccccccccccCCCCccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP-KCFSNFSMMIQEKSSNPIIGLA 694 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~~~~~~~~~ 694 (927)
|++++..+..+. .+++|++|++++|++....+..+..+++|++|++++|+..+.++ ..|.++
T Consensus 122 n~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---------------- 184 (440)
T 3zyj_A 122 NRLTTIPNGAFV-YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL---------------- 184 (440)
T ss_dssp SCCSSCCTTTSC-SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred CcCCeeCHhHhh-ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc----------------
Confidence 999654444454 79999999999999998888899999999999999965444443 344443
Q ss_pred cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774 (927)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 774 (927)
++|+.|+|++|+++.. | .+..+++|++|+|++|++++..|..|.
T Consensus 185 ----------------------------------~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 185 ----------------------------------SNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp ----------------------------------SSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred ----------------------------------cccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhc
Confidence 4559999999999864 4 488999999999999999999999999
Q ss_pred CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC-CcCCCCcccccCCCCCCCCC
Q 047797 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGL 840 (927)
Q Consensus 775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 840 (927)
++++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+|+..|++
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 9999999999999999999999999999999999999999654432 33456666678899988875
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.3e-25 Score=238.31 Aligned_cols=228 Identities=23% Similarity=0.219 Sum_probs=175.7
Q ss_pred EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF 619 (927)
Q Consensus 540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 619 (927)
.+..+.+++.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4455555666665443 46777777777777666667777777777777777777766667777778888888888775
Q ss_pred CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccc-cchhhccccccccccCCCCccccccccc
Q 047797 620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK-IPKCFSNFSMMIQEKSSNPIIGLANEIL 698 (927)
Q Consensus 620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 698 (927)
+..+..+. .+++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+.+++.|
T Consensus 90 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------- 151 (276)
T 2z62_A 90 SLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------- 151 (276)
T ss_dssp EECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------
T ss_pred ccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------
Confidence 55555554 677888888888888776666778888888888888888763 46666654444
Q ss_pred cccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCC----EEecccccccccCCcccc
Q 047797 699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT----ALNLSRNNLTGLIPPKIG 774 (927)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~ 774 (927)
+.|++++|++++..+..+..+++|+ +|++++|++++..+..+.
T Consensus 152 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 152 ---------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp ---------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred ---------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 8888888888888888888887777 899999999987666665
Q ss_pred CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821 (927)
Q Consensus 775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 821 (927)
. .+|++|++++|++++..+..+..+++|++|++++|++.|.||.-.
T Consensus 199 ~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 199 E-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp S-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred C-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 4 489999999999998777778999999999999999999998643
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.8e-28 Score=260.45 Aligned_cols=224 Identities=25% Similarity=0.264 Sum_probs=182.6
Q ss_pred CCceEeCcCCCCCC--CCcccc-------cCCCCCEEEccCccccccCCCcc--cccCcccEEEcccccccccCCccccC
Q 047797 536 NSTFLNLSKNKFSG--LPDCWL-------NFNSLSILNLANNRFSGKIPDSM--GFLHNIQTLSLRNNRLNGELPSSLKN 604 (927)
Q Consensus 536 ~L~~L~L~~n~l~~--lp~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~ 604 (927)
.++.|++++|+++. +|..+. ++++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 36777777777754 666554 68899999999999998888876 8899999999999999977 777777
Q ss_pred C-----CCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee--cCccc--cCCCCCCEEEccccccccc--cch
Q 047797 605 C-----SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN--IPFQL--CHLAFIQVLDLSLNNISGK--IPK 673 (927)
Q Consensus 605 l-----~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~N~l~~~--~p~ 673 (927)
+ ++|++|++++|++.+..|..+. .+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ++.
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 6 8999999999999776667776 799999999999998765 33344 7899999999999998732 111
Q ss_pred hhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCc-cccccc
Q 047797 674 CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP-EEITDL 752 (927)
Q Consensus 674 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l 752 (927)
.+ +..+++|+.||+++|++++.+| ..+..+
T Consensus 222 ~~-------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 222 AL-------------------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp HH-------------------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred HH-------------------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 11 1224556999999999999875 566778
Q ss_pred cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 99999999999999 6787776 8999999999999976 66 8899999999999999986
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=9.5e-26 Score=248.55 Aligned_cols=202 Identities=21% Similarity=0.247 Sum_probs=137.5
Q ss_pred CCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCC
Q 047797 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSL 370 (927)
Q Consensus 292 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L 370 (927)
.....++++++++. +|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.+++..+. +.++++|
T Consensus 32 ~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 32 RNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCV------NLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp TTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCC------CCCEEECCCCccCccCHhhcCCCCCC
Confidence 33344555555542 333222 2555555555555554444455554 666666666666655555 7777788
Q ss_pred CEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccCh-hhhhcCCCCCEEEccCC-cceecccCCcccccccceeec
Q 047797 371 KVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISE-TFFSNMSNLQMLFLADN-SLTLKLSHDWVPAFQLKWLSL 448 (927)
Q Consensus 371 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~L 448 (927)
++|++++|.+++..+..++++++|++|++++|++++ +|. ..+..+++|++|++++| .+....+..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 888888888876666667888888888888888874 443 45777888888888887 466666677778888888888
Q ss_pred ccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccC
Q 047797 449 ASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG 504 (927)
Q Consensus 449 ~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 504 (927)
++|.+.+..|..+..+++|++|++++|.+. .+|..+....++|++|++++|.+++
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 888888777888888888999999988874 4555555555677777777776654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9e-25 Score=255.04 Aligned_cols=287 Identities=22% Similarity=0.195 Sum_probs=152.0
Q ss_pred CCcCCCCCCCCCCCCccccceeec------CCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCC
Q 047797 55 GVLSSWGSEDGKRDCCKWRGVRCS------NTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGG 128 (927)
Q Consensus 55 ~~~~~W~~~~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~ 128 (927)
...++|. .+.+||.|+|..|. .....++.|++++ +.++ .+|..+. ++|++|+|++|.++.
T Consensus 10 ~~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~--------n~L~-~lp~~l~--~~L~~L~L~~N~l~~ 75 (622)
T 3g06_A 10 AVWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE--------SGLT-TLPDCLP--AHITTLVIPDNNLTS 75 (622)
T ss_dssp CHHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS--------SCCS-CCCSCCC--TTCSEEEECSCCCSC
T ss_pred HHHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC--------CCcC-ccChhhC--CCCcEEEecCCCCCC
Confidence 4556776 46789999775331 0122467777776 5555 5666554 677777777777765
Q ss_pred CCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHH
Q 047797 129 SPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQ 208 (927)
Q Consensus 129 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 208 (927)
+|. .+++|++|+|++|.+++ +|. .+++|++|++++|.+...+. .+++|++|++++|.++..+.
T Consensus 76 --lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~--- 138 (622)
T 3g06_A 76 --LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV--- 138 (622)
T ss_dssp --CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC---
T ss_pred --CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC---
Confidence 555 46777777777777653 444 56677777776666544332 45566666666666555322
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhh
Q 047797 209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288 (927)
Q Consensus 209 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 288 (927)
.+++|++|++++|.+++.+.. +++|+.|++++|.+++ +| ...++|+.|++++|.+++ +|.
T Consensus 139 ---~l~~L~~L~Ls~N~l~~l~~~-------~~~L~~L~L~~N~l~~--l~----~~~~~L~~L~Ls~N~l~~-l~~--- 198 (622)
T 3g06_A 139 ---LPPGLQELSVSDNQLASLPAL-------PSELCKLWAYNNQLTS--LP----MLPSGLQELSVSDNQLAS-LPT--- 198 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSCCSC-CCC---
T ss_pred ---CCCCCCEEECcCCcCCCcCCc-------cCCCCEEECCCCCCCC--Cc----ccCCCCcEEECCCCCCCC-CCC---
Confidence 135555555555555543321 1455555555555532 22 112255555555555543 222
Q ss_pred cCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCC
Q 047797 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL 368 (927)
Q Consensus 289 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~ 368 (927)
..++|+.|++++|.++. +|. .++ +|+.|++++|.+++.. ..++
T Consensus 199 ~~~~L~~L~L~~N~l~~-l~~---~~~------------------------------~L~~L~Ls~N~L~~lp---~~l~ 241 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTS-LPA---LPS------------------------------GLKELIVSGNRLTSLP---VLPS 241 (622)
T ss_dssp CCTTCCEEECCSSCCSS-CCC---CCT------------------------------TCCEEECCSSCCSCCC---CCCT
T ss_pred ccchhhEEECcCCcccc-cCC---CCC------------------------------CCCEEEccCCccCcCC---CCCC
Confidence 12445555555555442 221 124 4444455444444322 2334
Q ss_pred CCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccC
Q 047797 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSH 435 (927)
Q Consensus 369 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 435 (927)
+|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+.++++|+.|++++|++++..+.
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCCCCCCcCHH
Confidence 55555555555552 222 3445555555555555 3443 245555555555555555544433
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.2e-24 Score=250.34 Aligned_cols=262 Identities=26% Similarity=0.333 Sum_probs=186.5
Q ss_pred cccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCC
Q 047797 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545 (927)
Q Consensus 466 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n 545 (927)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. ..++|++|++++|++++ +|..+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCC
Confidence 4556666666655 3343332 356666666666653 333 34666777777776664 4446677888888888
Q ss_pred CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChh
Q 047797 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC 625 (927)
Q Consensus 546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 625 (927)
+++++|. .+++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|+++ .+|
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~-- 177 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP-- 177 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC--
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc--
Confidence 8888776 56778888888888875 4443 3788888888888874 343 3467888888888884 466
Q ss_pred hhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccce
Q 047797 626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY 705 (927)
Q Consensus 626 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 705 (927)
..+++|+.|++++|++++ +|. .+++|+.|++++|.++. +|..
T Consensus 178 --~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~------------------------------- 219 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL------------------------------- 219 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC-------------------------------
T ss_pred --ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC-------------------------------
Confidence 146788888888888875 343 24678888888888773 3321
Q ss_pred eeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCC
Q 047797 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785 (927)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 785 (927)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|++ +|. .+++|+.|+|+
T Consensus 220 ----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 220 ----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVY 269 (622)
T ss_dssp ----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred ----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCC
Confidence 1345889999999987 44 456889999999999985 454 56889999999
Q ss_pred CCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 786 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
+|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 99998 6788899999999999999999887764
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2e-26 Score=249.47 Aligned_cols=216 Identities=23% Similarity=0.231 Sum_probs=121.2
Q ss_pred CCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 536 NSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
+|++|++++|++++++ ..+..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 4455555555555533 455566666666666666654443 556666666666666665322 23566666666
Q ss_pred CCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA 694 (927)
Q Consensus 615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 694 (927)
+|++.+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 108 ~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------- 166 (317)
T 3o53_A 108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----------------- 166 (317)
T ss_dssp SSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-----------------
T ss_pred CCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-----------------
Confidence 6666433221 2455666666666666555555666666666666666666544433320
Q ss_pred cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774 (927)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 774 (927)
.++.|+.|++++|++++..+ ...+++|++|+|++|++++.. ..+.
T Consensus 167 --------------------------------~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~-~~~~ 211 (317)
T 3o53_A 167 --------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQ 211 (317)
T ss_dssp --------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGG
T ss_pred --------------------------------ccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcch-hhhc
Confidence 12233666666666655422 223566666666666666443 3366
Q ss_pred CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
.+++|++|+|++|+++ .+|..+..+++|+.|++++|++.|
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 6666666666666666 345556666666666666666663
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.5e-27 Score=281.24 Aligned_cols=404 Identities=14% Similarity=0.066 Sum_probs=187.3
Q ss_pred CCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHh-hcccCccEEEccCCcCcCCcchhhh-
Q 047797 212 QLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLF-NLSRNILHLDLGFNHLQGSIPEAFQ- 288 (927)
Q Consensus 212 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~-~~~~~L~~L~Ls~n~i~~~~~~~l~- 288 (927)
.+++|++|++++|.+++... ..+...+++|++|++++| .+++ .....+. .++ +|++|++++|.+++..+..+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCL--ELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCR-NLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHH--HHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGG
T ss_pred hCCCCCeEEeeCcEEcHHHH--HHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHH
Confidence 44455555555554433222 222211255555555555 2321 1122222 233 566666666555544333332
Q ss_pred ---cCCCCCEEEccCCc--CCCc-CcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCC------
Q 047797 289 ---HMVSLRLLSLASNE--LEGG-IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND------ 356 (927)
Q Consensus 289 ---~l~~L~~L~Ls~n~--l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~------ 356 (927)
.+++|++|++++|. +... ++..+..+++|++|++++|...+.++..+..++ +|++|+++.+.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVRPD 252 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT------TCSEEECSBCCCCCCHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC------cceEcccccccCccchh
Confidence 44566666666654 1100 111123346666666666532223555555555 56666644332
Q ss_pred -CcccCCCCCCCCCCCEE-EccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceeccc
Q 047797 357 -ITGPIPDLGRFLSLKVL-KLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLS 434 (927)
Q Consensus 357 -l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 434 (927)
+.+..+.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++| +....
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~- 329 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG- 329 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH-
T ss_pred hHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH-
Confidence 12211224455555555 2322221 2333344455666666666666543332323445666666666655 22111
Q ss_pred CCcccccccceeecccccCCCCCChhhhcCccccEEEccC---------CccCCCccchHHhhccccceeecccccccCC
Q 047797 435 HDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN---------IGISDTIPDWFWDLSIELFFLNLSNNHISGK 505 (927)
Q Consensus 435 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~---------n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 505 (927)
++.....+++|++|++++ +.+++.....+...+++|++|.++.|.+++.
T Consensus 330 ----------------------l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~ 387 (594)
T 2p1m_B 330 ----------------------LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387 (594)
T ss_dssp ----------------------HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred ----------------------HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence 111112233444444421 2222222222222234455554444444332
Q ss_pred CCCccc-cCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC------CcccccCCCCCEEEccCccccccCCCcc
Q 047797 506 LPDLSV-LKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL------PDCWLNFNSLSILNLANNRFSGKIPDSM 578 (927)
Q Consensus 506 ~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 578 (927)
....+. .+++|+.++++.+... .-+.++.. +..+..+++|++|++++ .+++..+..+
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~---------------~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPK---------------APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTT---------------CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred HHHHHHhhCCCcceeEeecccCC---------------CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 211111 1222333332210000 00223322 22245677788888866 5555444444
Q ss_pred cc-cCcccEEEcccccccccCCccc-cCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccc-cCCC
Q 047797 579 GF-LHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL-CHLA 655 (927)
Q Consensus 579 ~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~ 655 (927)
.. +++|++|++++|.+++..+..+ ..+++|++|+|++|++++.....+...+++|++|++++|+++......+ ..++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 44 6778888888887765544444 5677888888888877433333333356778888888777754333333 4556
Q ss_pred CCCEEEccccc
Q 047797 656 FIQVLDLSLNN 666 (927)
Q Consensus 656 ~L~~L~Ls~N~ 666 (927)
.|+...+..+.
T Consensus 532 ~l~i~~~~~~~ 542 (594)
T 2p1m_B 532 KLNVEVIDERG 542 (594)
T ss_dssp TEEEEEECSSS
T ss_pred CCEEEEecCCC
Confidence 66665555443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.2e-26 Score=275.31 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=74.0
Q ss_pred hcCCCCCEEEccCCcCCCcCccccc-CCCCCcEEeCCCC-CCCCc-hhHHHhhccCCCcCCCccEEEccCCCCcccCC--
Q 047797 288 QHMVSLRLLSLASNELEGGIPKFFG-NMCSLNQLYLPRN-KLSGQ-LSELIQNLSSGCTVNSLEGLCLYANDITGPIP-- 362 (927)
Q Consensus 288 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~-- 362 (927)
..+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++.....++ +|++|++++|.+++..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~------~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR------NLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT------TCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC------CCCEEeCcCCccCCcchHH
Confidence 4566666666666666554444443 4666666666666 33322 333334455 66666666666544322
Q ss_pred --C-CCCCCCCCEEEccCCc--CCC-cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797 363 --D-LGRFLSLKVLKLGENH--LNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427 (927)
Q Consensus 363 --~-l~~l~~L~~L~Ls~n~--l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 427 (927)
. ...+++|++|++++|. +.. .++..+..+++|++|++++|...+.++. .+..+++|++|+++.+
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGY 245 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBC
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccc
Confidence 1 2356677777777775 221 1112234457777777777732223433 4667777777776544
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.5e-26 Score=246.18 Aligned_cols=244 Identities=23% Similarity=0.271 Sum_probs=199.9
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCcccc-ccCCCccc-------ccCcccEEEcccccccccCCccc--cC
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFS-GKIPDSMG-------FLHNIQTLSLRNNRLNGELPSSL--KN 604 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~--~~ 604 (927)
.+|+.+++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++.+|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3578889999999 888876654 999999999994 45666555 68999999999999999999886 89
Q ss_pred CCCCCEEecCCCcCCCCCChhhhhcC-----ccCcEEEccCcccceecCccccCCCCCCEEEcccccccccc--chhhcc
Q 047797 605 CSKLRVLDLRKNALFGEVPTCVGGSL-----QNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKI--PKCFSN 677 (927)
Q Consensus 605 l~~L~~L~Ls~N~l~~~~p~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~ 677 (927)
+++|++|++++|++++. |..+. .+ ++|++|++++|++.+..|..+..+++|++|++++|++.+.+ |..+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~- 196 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC- 196 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC-
T ss_pred CCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH-
Confidence 99999999999999776 77666 45 89999999999999988899999999999999999987653 22220
Q ss_pred ccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccc---cCccccccccC
Q 047797 678 FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCE---AIPEEITDLVG 754 (927)
Q Consensus 678 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~---~~p~~~~~l~~ 754 (927)
+..+++|+.|++++|++++ .....+.++++
T Consensus 197 -----------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 197 -----------------------------------------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp -----------------------------------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred -----------------------------------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 1224556999999999984 22344568899
Q ss_pred CCEEecccccccccCC-ccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCC
Q 047797 755 LTALNLSRNNLTGLIP-PKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAG 833 (927)
Q Consensus 755 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~ 833 (927)
|++|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....+..+....+.+
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKG 305 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTT
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccC
Confidence 9999999999999875 56777899999999999999 7888776 8999999999999986 6544455555555666
Q ss_pred CC
Q 047797 834 NL 835 (927)
Q Consensus 834 n~ 835 (927)
|+
T Consensus 306 N~ 307 (312)
T 1wwl_A 306 NP 307 (312)
T ss_dssp CT
T ss_pred CC
Confidence 63
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6e-24 Score=224.40 Aligned_cols=206 Identities=22% Similarity=0.301 Sum_probs=142.9
Q ss_pred CCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEcc
Q 047797 560 LSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639 (927)
Q Consensus 560 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~ 639 (927)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|++. .+|...+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 344444444444 2333222 34555555555555444445555555555555555553 3333332245666666666
Q ss_pred CcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeec
Q 047797 640 SNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKG 719 (927)
Q Consensus 640 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (927)
+|++++..+..+..+++|++|++++|++++..+..|..++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------------------------- 134 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--------------------------------------- 134 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC---------------------------------------
Confidence 66666555555666777777777777777665555554443
Q ss_pred ccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccC
Q 047797 720 SEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL 799 (927)
Q Consensus 720 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 799 (927)
|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..
T Consensus 135 -----------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 135 -----------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp -----------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -----------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 378888888888777777889999999999999999888888999999999999999999877778999
Q ss_pred CCCCCeEeCcCCcCcccCCC
Q 047797 800 LSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 800 l~~L~~L~ls~N~l~~~~p~ 819 (927)
+++|+.|++++|++.|.|+.
T Consensus 204 l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTCCEEECCSSCBCCSSSS
T ss_pred ccCCCEEEecCCCeeCCCcc
Confidence 99999999999999999874
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8e-25 Score=250.80 Aligned_cols=218 Identities=22% Similarity=0.219 Sum_probs=187.3
Q ss_pred CCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEe
Q 047797 534 PSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 612 (927)
+++|++|++++|.++++ |..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 44788999999999985 4688999999999999999997766 8899999999999999986443 38999999
Q ss_pred cCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhc-cccccccccCCCCcc
Q 047797 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS-NFSMMIQEKSSNPII 691 (927)
Q Consensus 613 Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~~~~~~~~ 691 (927)
+++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|++|+|++|.+++.+|..+. .+
T Consensus 106 L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l------------- 168 (487)
T 3oja_A 106 AANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------------- 168 (487)
T ss_dssp CCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-------------
T ss_pred CcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-------------
Confidence 999999655443 468999999999999998898999999999999999999988777664 33
Q ss_pred ccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCc
Q 047797 692 GLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP 771 (927)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 771 (927)
+.|+.|+|++|.+++..+ +..+++|+.|+|++|++++.+|
T Consensus 169 -------------------------------------~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~- 208 (487)
T 3oja_A 169 -------------------------------------DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP- 208 (487)
T ss_dssp -------------------------------------TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-
T ss_pred -------------------------------------CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-
Confidence 345999999999988743 4469999999999999998655
Q ss_pred cccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797 772 KIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK 816 (927)
Q Consensus 772 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 816 (927)
.+..+++|+.|||++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 58999999999999999996 788899999999999999999854
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5e-24 Score=226.04 Aligned_cols=226 Identities=23% Similarity=0.244 Sum_probs=191.2
Q ss_pred EeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccccc
Q 047797 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597 (927)
Q Consensus 519 l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 597 (927)
++..+..+.......+.++++|++++|++++++. .+.++++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 3344444444333456789999999999999654 788999999999999999988888999999999999999999998
Q ss_pred CCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee-cCccccCCCCCCEEEccccccccccchhhc
Q 047797 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN-IPFQLCHLAFIQVLDLSLNNISGKIPKCFS 676 (927)
Q Consensus 598 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 676 (927)
.+..|.++++|++|++++|++.+..+..+. .+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 889999999999999999999765554555 799999999999999874 689999999999999999999987777776
Q ss_pred cccccccccCCCCccccccccccccccceeeeecceeEEeeeccccccccccccee-EEEccCCcccccCccccccccCC
Q 047797 677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK-YLDLSSNKLCEAIPEEITDLVGL 755 (927)
Q Consensus 677 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L 755 (927)
.+..+ +.+. .|++++|++++..+..+.. .+|
T Consensus 171 ~l~~L-----------------------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L 202 (276)
T 2z62_A 171 VLHQM-----------------------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRL 202 (276)
T ss_dssp HHHTC-----------------------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCE
T ss_pred hhhhc-----------------------------------------------cccceeeecCCCcccccCccccCC-Ccc
Confidence 65544 1122 8999999999877766654 589
Q ss_pred CEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797 756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793 (927)
Q Consensus 756 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 793 (927)
++|+|++|++++..+..+..+++|+.|++++|++++..
T Consensus 203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 99999999999887778899999999999999999654
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-25 Score=256.68 Aligned_cols=221 Identities=25% Similarity=0.227 Sum_probs=183.7
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
+++|++|++++|.+++++. +..+++|++|++++|.+++..+ .++|++|++++|.+++..+. .+++|+.|++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L 127 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence 4567777778888777444 7889999999999999986543 38999999999999977654 4588999999
Q ss_pred CCCcCCCCCChhhhhcCccCcEEEccCcccceecCcccc-CCCCCCEEEccccccccccchhhccccccccccCCCCccc
Q 047797 614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC-HLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIG 692 (927)
Q Consensus 614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 692 (927)
++|.+++..|..+. .+++|++|++++|.+++.+|..+. .+++|++|+|++|.+++..+..
T Consensus 128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~------------------ 188 (487)
T 3oja_A 128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV------------------ 188 (487)
T ss_dssp CSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC------------------
T ss_pred CCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc------------------
Confidence 99999877777776 699999999999999998888886 7999999999999998652211
Q ss_pred cccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcc
Q 047797 693 LANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK 772 (927)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 772 (927)
.+++|+.|+|++|++++.+| .+..+++|+.|+|++|++++ +|..
T Consensus 189 ----------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 189 ----------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp ----------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred ----------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchh
Confidence 13456999999999998665 49999999999999999996 5778
Q ss_pred ccCCCCCCeEeCCCCcCc-ccCCccccCCCCCCeEeCc-------CCcCcccCC
Q 047797 773 IGQLKSLDFLDLSRNHFS-GNIPSSLSLLSGLSVLDLS-------YNSLSGKIP 818 (927)
Q Consensus 773 l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-------~N~l~~~~p 818 (927)
+..+++|+.|++++|.+. +.+|..+..++.|+.++++ .|+..|.+|
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 999999999999999998 7778888888888888886 555555554
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-25 Score=242.21 Aligned_cols=266 Identities=19% Similarity=0.177 Sum_probs=147.0
Q ss_pred EEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEE
Q 047797 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLK 374 (927)
Q Consensus 295 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 374 (927)
..+++.+.+....+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++..+ +..+++|++|+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLELLNLSSNVLYETLD-LESLSTLRTLD 86 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT------TCCEEECTTSCCEEEEE-ETTCTTCCEEE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC------cCCEEECCCCcCCcchh-hhhcCCCCEEE
Confidence 344444444433334444455566666666655555555555554 55555555554443332 44444444444
Q ss_pred ccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCC
Q 047797 375 LGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG 454 (927)
Q Consensus 375 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~ 454 (927)
+++|.+++.. ..++|++|++++|+++...+.. +++|++|++++|.+.
T Consensus 87 Ls~n~l~~l~------------------------------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 87 LNNNYVQELL------------------------------VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKIT 133 (317)
T ss_dssp CCSSEEEEEE------------------------------ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCC
T ss_pred CcCCcccccc------------------------------CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCC
Confidence 4444443221 1244444444444444333222 123444444444444
Q ss_pred CCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCC
Q 047797 455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP 534 (927)
Q Consensus 455 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 534 (927)
+..+..+..+++|++|++++|.+.+..+..+....++
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~------------------------------------------- 170 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT------------------------------------------- 170 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-------------------------------------------
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-------------------------------------------
Confidence 3444445555566666666666554444433322223
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
|++|++++|+++++|. ...+++|++|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus 171 --L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 171 --LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp --CCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred --CCEEECCCCcCccccc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 3444444444444322 22367788888888888754 444777888888888888888 456678888888888888
Q ss_pred CCcCC-CCCChhhhhcCccCcEEEccCc-ccceecCc
Q 047797 615 KNALF-GEVPTCVGGSLQNLIILRLKSN-NFHGNIPF 649 (927)
Q Consensus 615 ~N~l~-~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~ 649 (927)
+|++. +.+|.++. .+++|+.++++++ .+.+..|.
T Consensus 246 ~N~~~~~~~~~~~~-~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 246 GNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCCBHHHHHHHHH-TCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCccCcCHHHHHh-ccccceEEECCCchhccCCchh
Confidence 88886 55666665 6888888888844 44554443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.7e-23 Score=222.66 Aligned_cols=208 Identities=24% Similarity=0.251 Sum_probs=163.7
Q ss_pred cccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccC
Q 047797 554 WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633 (927)
Q Consensus 554 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L 633 (927)
+.++++++++++++|.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++ ++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence 445666777777777776 3444433 567777777777777667777777777777777777743 3332 257788
Q ss_pred cEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeeccee
Q 047797 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV 713 (927)
Q Consensus 634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
++|++++|+++ .+|..+..+++|++|++++|++++..|..|.+++.|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 88888888877 566777888888899999998887666666665444
Q ss_pred EEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797 714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793 (927)
Q Consensus 714 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 793 (927)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+
T Consensus 127 ------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 127 ------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp ------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred ------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 89999999998888888899999999999999999877777899999999999999999 67
Q ss_pred CccccCCCCCCeEeCcCCcCcccCCC
Q 047797 794 PSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 794 p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
|..+..+++|+.+++++|++.|.|..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred ChhhcccccCCeEEeCCCCccCcCcc
Confidence 88888889999999999999998754
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.1e-23 Score=216.66 Aligned_cols=205 Identities=24% Similarity=0.299 Sum_probs=168.6
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
+.+.+++++++++.+|..+. +++++|++++|.+++..+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45677788888888776554 5788888888888877777888888888888888888876666778888999999999
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN 695 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 695 (927)
|++.+ +|...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..++.
T Consensus 95 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------- 158 (270)
T 2o6q_A 95 NKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--------------- 158 (270)
T ss_dssp SCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred CcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc---------------
Confidence 98854 44333336889999999999998887888889999999999999998666555655444
Q ss_pred ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC
Q 047797 696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ 775 (927)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 775 (927)
|+.|++++|++++..+..|.++++|++|+|++|++++..+..+..
T Consensus 159 -----------------------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 159 -----------------------------------LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp -----------------------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -----------------------------------cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 489999999999988888999999999999999999887778999
Q ss_pred CCCCCeEeCCCCcCcccC
Q 047797 776 LKSLDFLDLSRNHFSGNI 793 (927)
Q Consensus 776 l~~L~~L~Ls~N~l~~~~ 793 (927)
+++|+.|+|++|.+...-
T Consensus 204 l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTCCEEECCSSCBCCSS
T ss_pred ccCCCEEEecCCCeeCCC
Confidence 999999999999987543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.5e-23 Score=221.53 Aligned_cols=220 Identities=24% Similarity=0.251 Sum_probs=166.3
Q ss_pred ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617 (927)
Q Consensus 538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 617 (927)
..+++.++.+..+ .....+++|+.|++++|.+... ..+..+++|++|++++|++++. ..+..+++|++|++++|.
T Consensus 22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 22 IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred HHHHhcCcccccc-cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence 3445555555553 2345677788888888887632 3477788888888888888753 467788888888888888
Q ss_pred CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccc
Q 047797 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI 697 (927)
Q Consensus 618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 697 (927)
+.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++.
T Consensus 97 l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----------------- 158 (272)
T 3rfs_A 97 LQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN----------------- 158 (272)
T ss_dssp CCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred cCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-----------------
Confidence 8655444444 6888888888888888777777788888888888888888666655555444
Q ss_pred ccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCC
Q 047797 698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK 777 (927)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 777 (927)
|+.|++++|++++..+..++++++|++|++++|++++..|..+..++
T Consensus 159 ---------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 159 ---------------------------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp ---------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ---------------------------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 38888888888887777788888888888888888888777788888
Q ss_pred CCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797 778 SLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG 820 (927)
Q Consensus 778 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 820 (927)
+|+.|++++|.+.+.. +.|++|+++.|.++|.+|..
T Consensus 206 ~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 8889999888887543 46788888888888888863
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.1e-23 Score=216.32 Aligned_cols=207 Identities=20% Similarity=0.196 Sum_probs=179.3
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
+.+++.|++++|.++.++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 356788888888888775 478899999999999999863 47889999999999999999888888999999999999
Q ss_pred CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797 614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693 (927)
Q Consensus 614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 693 (927)
++|++.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++.|
T Consensus 117 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 183 (272)
T 3rfs_A 117 VENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL------------ 183 (272)
T ss_dssp TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC------------
Confidence 99999765555555 79999999999999998888788999999999999999997777666655444
Q ss_pred ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccc
Q 047797 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI 773 (927)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 773 (927)
+.|++++|++++.+|..+.++++|+.|++++|.+.+.
T Consensus 184 --------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----- 220 (272)
T 3rfs_A 184 --------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----- 220 (272)
T ss_dssp --------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----
T ss_pred --------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----
Confidence 9999999999999888899999999999999998754
Q ss_pred cCCCCCCeEeCCCCcCcccCCccccCCC
Q 047797 774 GQLKSLDFLDLSRNHFSGNIPSSLSLLS 801 (927)
Q Consensus 774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 801 (927)
+++|+.|+++.|.++|.+|..++.+.
T Consensus 221 --~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 --CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp --TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred --CcHHHHHHHHHHhCCCcccCcccccC
Confidence 45799999999999999999887654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=3.5e-22 Score=212.56 Aligned_cols=201 Identities=23% Similarity=0.197 Sum_probs=171.2
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
.++++++++++++++.+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 3467888888888888887664 6789999999999888888888999999999999998865443 68899999999
Q ss_pred CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797 614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693 (927)
Q Consensus 614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 693 (927)
++|++ ..+|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..++.
T Consensus 85 s~N~l-~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------- 149 (290)
T 1p9a_G 85 SHNQL-QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK------------- 149 (290)
T ss_dssp CSSCC-SSCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------
T ss_pred CCCcC-CcCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-------------
Confidence 99999 47777665 6899999999999999887888999999999999999999766666655444
Q ss_pred ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccc
Q 047797 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI 773 (927)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 773 (927)
|+.|+|++|++++..+..|.++++|+.|+|++|+++ .+|..+
T Consensus 150 -------------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 150 -------------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp -------------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -------------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 499999999999887878899999999999999999 668888
Q ss_pred cCCCCCCeEeCCCCcCcc
Q 047797 774 GQLKSLDFLDLSRNHFSG 791 (927)
Q Consensus 774 ~~l~~L~~L~Ls~N~l~~ 791 (927)
...++|+.|+|++|.+..
T Consensus 192 ~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTCCCSEEECCSCCBCC
T ss_pred cccccCCeEEeCCCCccC
Confidence 888999999999999874
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.5e-22 Score=211.17 Aligned_cols=212 Identities=21% Similarity=0.216 Sum_probs=150.9
Q ss_pred cccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEc
Q 047797 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL 662 (927)
Q Consensus 583 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 662 (927)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556666666665 3444433 4666777777776555554444 5677777777777777666666777888888888
Q ss_pred cccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccc
Q 047797 663 SLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC 742 (927)
Q Consensus 663 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 742 (927)
++|++++..+..|..++. |+.|+|++|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~--------------------------------------------------L~~L~L~~N~l~ 120 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQ--------------------------------------------------LDKLYLGGNQLK 120 (251)
T ss_dssp TTSCCCCCCTTTTTTCTT--------------------------------------------------CCEEECCSSCCC
T ss_pred CCCcccccChhHhcccCC--------------------------------------------------CCEEEcCCCcCC
Confidence 888887666555555443 488888888888
Q ss_pred ccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCc
Q 047797 743 EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQ 822 (927)
Q Consensus 743 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 822 (927)
+..+..|.++++|++|+|++|++++..+..|+.+++|++|+|++|++++..|..+..+++|++|++++|++.|.++....
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~ 200 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHH
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHH
Confidence 87777889999999999999999988887899999999999999999988888899999999999999999998432211
Q ss_pred C-CCCcc-----cccCCCCCCCCCCCCCCCCCC
Q 047797 823 L-QSFNA-----SVYAGNLELCGLPLPNKCADE 849 (927)
Q Consensus 823 ~-~~~~~-----~~~~~n~~lc~~~~~~~C~~~ 849 (927)
+ .++.. ....|+ .+|+.|....|...
T Consensus 201 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 201 LSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp HHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 1 11111 112233 46777777788654
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.2e-22 Score=208.33 Aligned_cols=86 Identities=21% Similarity=0.333 Sum_probs=41.7
Q ss_pred CCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCcc-ccccCCCcccccCcccEEEccc-ccccccCCccccCCCCCC
Q 047797 533 LPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNR-FSGKIPDSMGFLHNIQTLSLRN-NRLNGELPSSLKNCSKLR 609 (927)
Q Consensus 533 ~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 609 (927)
.+.++++|++++|+++++|. .+.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 33445555555555555332 34445555555555553 4444444444555555555554 455444444444445555
Q ss_pred EEecCCCcC
Q 047797 610 VLDLRKNAL 618 (927)
Q Consensus 610 ~L~Ls~N~l 618 (927)
+|++++|++
T Consensus 109 ~L~l~~n~l 117 (239)
T 2xwt_C 109 FLGIFNTGL 117 (239)
T ss_dssp EEEEEEECC
T ss_pred EEeCCCCCC
Confidence 555555544
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.1e-23 Score=221.45 Aligned_cols=227 Identities=22% Similarity=0.192 Sum_probs=170.1
Q ss_pred CCceEeCcCCCCCC--CCc--ccccCCCCCEEEccCccccccCCCcc--cccCcccEEEcccccccccCC----ccccCC
Q 047797 536 NSTFLNLSKNKFSG--LPD--CWLNFNSLSILNLANNRFSGKIPDSM--GFLHNIQTLSLRNNRLNGELP----SSLKNC 605 (927)
Q Consensus 536 ~L~~L~L~~n~l~~--lp~--~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l 605 (927)
.++.+.+.++.++. +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35566666666644 211 12235678999999999888888877 888899999999998887555 344578
Q ss_pred CCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee--c--CccccCCCCCCEEEccccccccccchhhcccccc
Q 047797 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN--I--PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681 (927)
Q Consensus 606 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 681 (927)
++|++|++++|++.+..|..+. .+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++.....
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~---- 218 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA---- 218 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH----
T ss_pred cCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH----
Confidence 8999999999998666666665 688999999999987653 2 2234678899999999998863 2221000
Q ss_pred ccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc---cCCCEE
Q 047797 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL---VGLTAL 758 (927)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L 758 (927)
.+..+++|++|||++|++++.+|..+..+ ++|++|
T Consensus 219 ------------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 219 ------------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp ------------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred ------------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 01223456899999999999888888777 699999
Q ss_pred ecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797 759 NLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 759 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999999 5677765 7999999999999964 43 6778999999999999874
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.4e-23 Score=231.75 Aligned_cols=237 Identities=22% Similarity=0.229 Sum_probs=170.1
Q ss_pred CCCCceEeCcCCCCCCCC-----cccccCC-CCCEEEccCccccccCCCccccc-----CcccEEEcccccccccCCccc
Q 047797 534 PSNSTFLNLSKNKFSGLP-----DCWLNFN-SLSILNLANNRFSGKIPDSMGFL-----HNIQTLSLRNNRLNGELPSSL 602 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~ 602 (927)
+.+|++|++++|.+++.+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 445777888888877755 5667777 78888888888887766666664 888889998888887666543
Q ss_pred ----cCC-CCCCEEecCCCcCCCCCChhhhhc----CccCcEEEccCcccceec----CccccCCC-CCCEEEccccccc
Q 047797 603 ----KNC-SKLRVLDLRKNALFGEVPTCVGGS----LQNLIILRLKSNNFHGNI----PFQLCHLA-FIQVLDLSLNNIS 668 (927)
Q Consensus 603 ----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~----~~~l~~l~-~L~~L~Ls~N~l~ 668 (927)
..+ ++|++|++++|++++..+..+... .++|++|++++|.+++.. +..+..++ +|++|+|++|+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 444 788999999998866555444321 358889999998887533 34445555 8899999999888
Q ss_pred cccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccc-cceeEEEccCCccccc---
Q 047797 669 GKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTL-GFVKYLDLSSNKLCEA--- 744 (927)
Q Consensus 669 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~--- 744 (927)
+..+..+... +... ++|+.|||++|++++.
T Consensus 181 ~~~~~~l~~~----------------------------------------------l~~~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 181 SKNCAELAKF----------------------------------------------LASIPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp GSCHHHHHHH----------------------------------------------HHTSCTTCCEEECTTSCGGGSCHH
T ss_pred hhhHHHHHHH----------------------------------------------HHhCCCCCCEEECCCCCCChhHHH
Confidence 7666555432 0112 2568899999988773
Q ss_pred -Ccccccc-ccCCCEEecccccccccCC----ccccCCCCCCeEeCCCCcCcccC-------CccccCCCCCCeEeCcCC
Q 047797 745 -IPEEITD-LVGLTALNLSRNNLTGLIP----PKIGQLKSLDFLDLSRNHFSGNI-------PSSLSLLSGLSVLDLSYN 811 (927)
Q Consensus 745 -~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~ls~N 811 (927)
++..+.. .++|++|+|++|++++..+ ..+..+++|++|+|++|.+.+.. +..+..+++|+.||+++|
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 4445555 3589999999998887654 33466788999999999855433 335677788889999999
Q ss_pred cCccc
Q 047797 812 SLSGK 816 (927)
Q Consensus 812 ~l~~~ 816 (927)
++.+.
T Consensus 295 ~l~~~ 299 (362)
T 3goz_A 295 EIHPS 299 (362)
T ss_dssp BCCGG
T ss_pred cCCCc
Confidence 88766
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.6e-22 Score=203.50 Aligned_cols=207 Identities=20% Similarity=0.211 Sum_probs=174.4
Q ss_pred CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc-ccccCCccccCCCCCCEEecCC-CcCCCCCC
Q 047797 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR-LNGELPSSLKNCSKLRVLDLRK-NALFGEVP 623 (927)
Q Consensus 546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p 623 (927)
.++.+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++.+..+
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3677887 43 489999999999998888899999999999999997 8888888999999999999999 99964444
Q ss_pred hhhhhcCccCcEEEccCcccceecCccccCCCCCC---EEEcccc-ccccccchhhccccccccccCCCCcccccccccc
Q 047797 624 TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQ---VLDLSLN-NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699 (927)
Q Consensus 624 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 699 (927)
..+. .+++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|.+++.+
T Consensus 99 ~~f~-~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------ 157 (239)
T 2xwt_C 99 DALK-ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------ 157 (239)
T ss_dssp TSEE-CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS------------------
T ss_pred HHhC-CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc------------------
Confidence 4454 79999999999999986 665 88888888 9999999 8987666667665544
Q ss_pred ccccceeeeecceeEEeeeccccccccccccee-EEEccCCcccccCccccccccCCCEEeccccc-ccccCCccccCC-
Q 047797 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK-YLDLSSNKLCEAIPEEITDLVGLTALNLSRNN-LTGLIPPKIGQL- 776 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l- 776 (927)
+ .|++++|+++...+..|.. ++|++|+|++|+ +++..+..|..+
T Consensus 158 --------------------------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 158 --------------------------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp --------------------------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred --------------------------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence 8 9999999998655555655 899999999995 998888889999
Q ss_pred CCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCc
Q 047797 777 KSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNS 812 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 812 (927)
++|+.||+++|++++. |.. .+++|+.|+++++.
T Consensus 205 ~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp BCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred cCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 9999999999999954 443 56789999998874
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.5e-23 Score=232.25 Aligned_cols=234 Identities=19% Similarity=0.209 Sum_probs=165.8
Q ss_pred CCCceEeCcCCCCCC-----CCcccccCCCCCEEEccCc---cccccCCCcc-------cccCcccEEEcccccccc---
Q 047797 535 SNSTFLNLSKNKFSG-----LPDCWLNFNSLSILNLANN---RFSGKIPDSM-------GFLHNIQTLSLRNNRLNG--- 596 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~L~~L~L~~N~l~~--- 596 (927)
++|++|++++|+++. ++..+..+++|++|++++| .+.+.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 345566666665554 2233556777777777775 3344444443 567788888888888776
Q ss_pred -cCCccccCCCCCCEEecCCCcCCCCCChhhhh---cC---------ccCcEEEccCcccc-eecC---ccccCCCCCCE
Q 047797 597 -ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG---SL---------QNLIILRLKSNNFH-GNIP---FQLCHLAFIQV 659 (927)
Q Consensus 597 -~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L~~ 659 (927)
.+|..+..+++|++|+|++|.+.+..+..+.. .+ ++|++|++++|+++ +.++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 45667777888888888888774333333321 22 78888888888876 3344 45667788888
Q ss_pred EEcccccccc-----ccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEE
Q 047797 660 LDLSLNNISG-----KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYL 734 (927)
Q Consensus 660 L~Ls~N~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 734 (927)
|++++|+++. ..|..+. .+++|+.|
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~--------------------------------------------------~~~~L~~L 221 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLA--------------------------------------------------YCQELKVL 221 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGG--------------------------------------------------GCTTCCEE
T ss_pred EECcCCCCCHhHHHHHHHHHhh--------------------------------------------------cCCCccEE
Confidence 8888887762 1221222 34556899
Q ss_pred EccCCccc----ccCccccccccCCCEEeccccccccc----CCccc--cCCCCCCeEeCCCCcCcc----cCCccc-cC
Q 047797 735 DLSSNKLC----EAIPEEITDLVGLTALNLSRNNLTGL----IPPKI--GQLKSLDFLDLSRNHFSG----NIPSSL-SL 799 (927)
Q Consensus 735 dLs~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~ 799 (927)
+|++|+++ +.+|..+..+++|++|+|++|++++. +|..+ +.+++|++|+|++|++++ .+|..+ .+
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 99999996 66788889999999999999999876 56666 348999999999999997 477777 66
Q ss_pred CCCCCeEeCcCCcCcccCC
Q 047797 800 LSGLSVLDLSYNSLSGKIP 818 (927)
Q Consensus 800 l~~L~~L~ls~N~l~~~~p 818 (927)
+++|++|++++|++++..|
T Consensus 302 l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 302 MPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTSBSCTTSH
T ss_pred CCCceEEEccCCcCCcchh
Confidence 8999999999999997764
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7.3e-23 Score=224.07 Aligned_cols=230 Identities=20% Similarity=0.195 Sum_probs=179.4
Q ss_pred CCCceEeCcCCCCCCCCcccccCCCCCEEEccCcccccc-CCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK-IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
.+++.|++++|.+.+.+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 467778888888877555567789999999999998865 7777888999999999999998888888889999999999
Q ss_pred CCC-cCCCC-CChhhhhcCccCcEEEccCc-cccee-cCccccCCC-CCCEEEcccc--ccc-cccchhhcccccccccc
Q 047797 614 RKN-ALFGE-VPTCVGGSLQNLIILRLKSN-NFHGN-IPFQLCHLA-FIQVLDLSLN--NIS-GKIPKCFSNFSMMIQEK 685 (927)
Q Consensus 614 s~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~l~~~~ 685 (927)
++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.+
T Consensus 150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-------- 220 (336)
T 2ast_B 150 SGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-------- 220 (336)
T ss_dssp TTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------
T ss_pred CCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--------
Confidence 999 56542 455454 6899999999999 88764 577788899 9999999999 454 334444443
Q ss_pred CCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCc-ccccCccccccccCCCEEeccccc
Q 047797 686 SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK-LCEAIPEEITDLVGLTALNLSRNN 764 (927)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~ 764 (927)
+++|+.|++++|. +++..+..+.++++|++|++++|.
T Consensus 221 ------------------------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 ------------------------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ------------------------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ------------------------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 3455999999999 787888889999999999999995
Q ss_pred -ccccCCccccCCCCCCeEeCCCCcCcccCCccccCC-CCCCeEeCcCCcCcccCCC
Q 047797 765 -LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL-SGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 765 -l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 819 (927)
++......++++++|+.|++++| ++. ..+..+ ..+..|++++|++++..|.
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 33222236788999999999999 332 234444 3477888999999988775
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.2e-21 Score=205.71 Aligned_cols=123 Identities=25% Similarity=0.323 Sum_probs=57.8
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
+|++|++++|.++.+| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 4455555555555544 34455555555555555553322 45555555555555555432 2344555555555555
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
|++.+ ++. +. .+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 117 n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 117 TQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp SCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 55432 222 22 34444444444444443222 444444444444444443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=6.1e-22 Score=213.59 Aligned_cols=204 Identities=22% Similarity=0.197 Sum_probs=156.4
Q ss_pred CCceEeCcCCCCCC-CCccc--ccCCCCCEEEccCccccccCC----CcccccCcccEEEcccccccccCCccccCCCCC
Q 047797 536 NSTFLNLSKNKFSG-LPDCW--LNFNSLSILNLANNRFSGKIP----DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKL 608 (927)
Q Consensus 536 ~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 608 (927)
+|++|++++|++++ .|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 46777777777776 56666 778888888999888886554 234568889999999999988888888889999
Q ss_pred CEEecCCCcCCCC--CC-hhhhhcCccCcEEEccCcccceec--Cc-cccCCCCCCEEEccccccccccchhhccccccc
Q 047797 609 RVLDLRKNALFGE--VP-TCVGGSLQNLIILRLKSNNFHGNI--PF-QLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMI 682 (927)
Q Consensus 609 ~~L~Ls~N~l~~~--~p-~~~~~~l~~L~~L~L~~n~l~~~~--~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 682 (927)
++|++++|++.+. ++ ......+++|++|++++|+++... +. .+..+++|++|+|++|++++..|..+..+..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-- 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW-- 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC--
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC--
Confidence 9999999987542 11 222226888999999999986321 12 2467899999999999999887776655421
Q ss_pred cccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccc
Q 047797 683 QEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSR 762 (927)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~ 762 (927)
+++|++|+|++|+++ .+|..+. ++|++|+|++
T Consensus 250 ---------------------------------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 250 ---------------------------------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp ---------------------------------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred ---------------------------------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCC
Confidence 235689999999998 5676664 7999999999
Q ss_pred ccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797 763 NNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791 (927)
Q Consensus 763 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 791 (927)
|++++. |. +..+++|+.|+|++|+++.
T Consensus 282 N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 282 NRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 999975 33 7888999999999999974
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.5e-21 Score=207.02 Aligned_cols=206 Identities=26% Similarity=0.422 Sum_probs=172.1
Q ss_pred CcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCC
Q 047797 542 LSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621 (927)
Q Consensus 542 L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 621 (927)
+..+.++++ .....+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++.+
T Consensus 26 l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 26 AGKSNVTDT-VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp TTCSSTTSE-ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-
T ss_pred hCCCCcCce-ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-
Confidence 334444442 124567899999999999985 44 68899999999999999996554 9999999999999999954
Q ss_pred CChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccccc
Q 047797 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP 701 (927)
Q Consensus 622 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 701 (927)
++ .+. .+++|++|++++|++++. + .+..+++|++|++++|++++..+ +..
T Consensus 100 ~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------------------------ 149 (308)
T 1h6u_A 100 VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------------------------ 149 (308)
T ss_dssp CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG------------------------
T ss_pred ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC------------------------
Confidence 55 454 699999999999999864 3 38999999999999999986543 433
Q ss_pred ccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCe
Q 047797 702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF 781 (927)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 781 (927)
+++|+.|++++|++++..+ +.++++|+.|++++|++++..+ +..+++|++
T Consensus 150 --------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 150 --------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE 199 (308)
T ss_dssp --------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred --------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence 3455999999999988655 8999999999999999997643 899999999
Q ss_pred EeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797 782 LDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 782 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
|++++|++++..| +..+++|++|++++|++++
T Consensus 200 L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999997653 8899999999999999986
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=5.2e-22 Score=219.16 Aligned_cols=141 Identities=21% Similarity=0.188 Sum_probs=93.8
Q ss_pred CCceEeCcCCCCCC-----CCcccccCC-CCCEEEccCccccccCCCccc----cc-CcccEEEccccccccc----CCc
Q 047797 536 NSTFLNLSKNKFSG-----LPDCWLNFN-SLSILNLANNRFSGKIPDSMG----FL-HNIQTLSLRNNRLNGE----LPS 600 (927)
Q Consensus 536 ~L~~L~L~~n~l~~-----lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~~~ 600 (927)
+|++|++++|++++ ++..+..++ +|++|++++|.+++..+..+. .+ ++|++|++++|.+++. ++.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 34445555555442 233444454 788888888888766554433 33 5888888888888753 344
Q ss_pred cccC-CCCCCEEecCCCcCCCCCChhh---hhcCccCcEEEccCccccee-------cCccccCCCCCCEEEcccccccc
Q 047797 601 SLKN-CSKLRVLDLRKNALFGEVPTCV---GGSLQNLIILRLKSNNFHGN-------IPFQLCHLAFIQVLDLSLNNISG 669 (927)
Q Consensus 601 ~~~~-l~~L~~L~Ls~N~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~Ls~N~l~~ 669 (927)
.+.. .++|++|+|++|++.+..+..+ ...+++|++|++++|.+.+. ++..+..+++|+.||+++|++.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 4544 4589999999998865544222 23568899999999985433 33467788999999999999987
Q ss_pred ccchhhc
Q 047797 670 KIPKCFS 676 (927)
Q Consensus 670 ~~p~~~~ 676 (927)
..+..+.
T Consensus 299 ~~~~~~~ 305 (362)
T 3goz_A 299 SHSIPIS 305 (362)
T ss_dssp GGCHHHH
T ss_pred cchHHHH
Confidence 7665544
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.3e-20 Score=196.40 Aligned_cols=159 Identities=23% Similarity=0.254 Sum_probs=101.5
Q ss_pred cccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEc
Q 047797 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL 662 (927)
Q Consensus 583 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 662 (927)
+++.|++++|++++..+..|.++++|++|++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 444444444444444444444455555555555555433333333 4555555555555555444555566666777777
Q ss_pred cccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccc
Q 047797 663 SLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC 742 (927)
Q Consensus 663 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 742 (927)
++|++++..+..|..++. |+.|+|++|+++
T Consensus 115 ~~N~l~~~~~~~~~~l~~--------------------------------------------------L~~L~Ls~N~l~ 144 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTK--------------------------------------------------LKELRLNTNQLQ 144 (251)
T ss_dssp CSSCCCCCCTTTTTTCTT--------------------------------------------------CCEEECCSSCCC
T ss_pred CCCcCCCcChhHhccCCc--------------------------------------------------ccEEECcCCcCC
Confidence 777766554444444333 377778888777
Q ss_pred ccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797 743 EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792 (927)
Q Consensus 743 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 792 (927)
+..+..|+++++|++|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777788888888888888888888777888888888999998888865
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.2e-20 Score=204.99 Aligned_cols=242 Identities=19% Similarity=0.183 Sum_probs=184.8
Q ss_pred cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCC-CcccccCcccE-EEccccc
Q 047797 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIP-DSMGFLHNIQT-LSLRNNR 593 (927)
Q Consensus 517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L~~N~ 593 (927)
++++.++++++......+.++++|+|++|+|+.+|. +|.++++|++|+|++|++.+.+| .+|.++++++. +.+++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 456667777765444457789999999999999875 68999999999999999876555 57888988775 6677899
Q ss_pred ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccC-cccceecCccccCCC-CCCEEEcccccccccc
Q 047797 594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS-NNFHGNIPFQLCHLA-FIQVLDLSLNNISGKI 671 (927)
Q Consensus 594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~ 671 (927)
++...|..|..+++|++|++++|++.+..+..+. ...++..|++.+ +++....+..+..+. .++.|++++|+|+...
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 9988899999999999999999999654444443 566788898866 567766666677665 6899999999998544
Q ss_pred chhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccC-CcccccCccccc
Q 047797 672 PKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSS-NKLCEAIPEEIT 750 (927)
Q Consensus 672 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~~~~p~~~~ 750 (927)
+..|.. ..++.|++++ |.++.+.+..|.
T Consensus 171 ~~~f~~---------------------------------------------------~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 171 NSAFNG---------------------------------------------------TQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp TTSSTT---------------------------------------------------EEEEEEECTTCTTCCCCCTTTTT
T ss_pred hhhccc---------------------------------------------------cchhHHhhccCCcccCCCHHHhc
Confidence 443322 2348899975 677666667789
Q ss_pred cccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797 751 DLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 751 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 814 (927)
++++|++|||++|+|+...+..+. +|+.|.+.++.--..+| .+..+++|+.++++++.-.
T Consensus 200 ~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 200 GASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC 259 (350)
T ss_dssp TEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHH
T ss_pred cCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCccc
Confidence 999999999999999977555555 45555555544444677 4888999999999876433
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=8.1e-21 Score=207.75 Aligned_cols=253 Identities=19% Similarity=0.213 Sum_probs=154.4
Q ss_pred CccEEEcCCCCCCCCCcchhHhhc-ccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCc-CcccccCCCCCcE
Q 047797 242 SIETLDLSDNHLPSSSVYPWLFNL-SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG-IPKFFGNMCSLNQ 319 (927)
Q Consensus 242 ~L~~L~Ls~n~l~~~~~~~~l~~~-~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 319 (927)
.++.++++++.+. +..+... .++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3555666655542 2233333 12666666666666655444 34566666666666666543 5555666666666
Q ss_pred EeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCC-CCccc-CCC-CCCCCCCCEEEccCC-cCCCc-chhhhhccC-C
Q 047797 320 LYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN-DITGP-IPD-LGRFLSLKVLKLGEN-HLNGT-INKSLSHLF-K 393 (927)
Q Consensus 320 L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n-~l~~~-~~~-l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~ 393 (927)
|++++|.+++..+..++.++ +|++|++++| .+++. .+. +..+++|++|++++| .+++. ++..+..++ +
T Consensus 123 L~L~~~~l~~~~~~~l~~~~------~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNS------NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCT------TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred EeCcCcccCHHHHHHHhcCC------CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 66666666666666665555 6666666666 45432 333 556667777777777 66643 455666777 7
Q ss_pred CCEEecCCc--ccc-cccChhhhhcCCCCCEEEccCCc-ceecccCCcccccccceeeccccc-CCCCCChhhhcCcccc
Q 047797 394 LETLSLDGN--SFT-GVISETFFSNMSNLQMLFLADNS-LTLKLSHDWVPAFQLKWLSLASCK-MGPHFPNWLQTQNQLI 468 (927)
Q Consensus 394 L~~L~L~~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~L~ 468 (927)
|++|++++| .++ +.++. .+..+++|++|++++|. ++......+..+++|++|++++|. +.......+..+++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 777777777 343 23333 45667777777777777 555555566666777777777774 2212223577888999
Q ss_pred EEEccCCccCCCccchHHhhccccceeecccccccCCCCCcc
Q 047797 469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLS 510 (927)
Q Consensus 469 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 510 (927)
+|++++| ++.. .+......+..|++++|++++..|...
T Consensus 276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp EEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred EEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence 9999988 4332 222222457888888888888777653
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=8.3e-21 Score=193.10 Aligned_cols=164 Identities=23% Similarity=0.232 Sum_probs=136.6
Q ss_pred CEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797 609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS 687 (927)
Q Consensus 609 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 687 (927)
+.+++++|.+ +.+|..+ .+.+++|++++|++++..+ ..+..+++|++|++++|++++..+..|.+++.|
T Consensus 14 ~~l~~s~n~l-~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCc-ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 4677777777 4566544 3456788888888887654 457888889999999998887766667665444
Q ss_pred CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797 688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767 (927)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 767 (927)
++|+|++|++++..+..|.++++|++|+|++|++++
T Consensus 84 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 84 --------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp --------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred --------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence 899999999999888889999999999999999999
Q ss_pred cCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCC
Q 047797 768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSF 826 (927)
Q Consensus 768 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 826 (927)
..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.|.|+......++
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~ 178 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWL 178 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHH
T ss_pred ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865443333
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.5e-20 Score=189.53 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=135.3
Q ss_pred CEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCC
Q 047797 609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSN 688 (927)
Q Consensus 609 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 688 (927)
+.++++++.+ ..+|..+ .++++.|++++|++++..+..+..+++|++|+|++|++++..|..|.+++.|
T Consensus 14 ~~v~c~~~~l-~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCC-SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCc-CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 4667777776 4566543 2578888888888887777788888899999999999887777777765544
Q ss_pred CccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccccccc
Q 047797 689 PIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768 (927)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 768 (927)
++|+|++|+|++..+..|.++++|++|+|++|++++.
T Consensus 83 -------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 83 -------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 8999999999887777889999999999999999999
Q ss_pred CCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797 769 IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821 (927)
Q Consensus 769 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 821 (927)
.|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.|.|+..+
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 99999999999999999999998888889999999999999999999887543
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=9.5e-21 Score=211.28 Aligned_cols=232 Identities=20% Similarity=0.282 Sum_probs=135.5
Q ss_pred cCccEEEcCCCCCCCCCcchh----HhhcccCccEEEccCCc---CcCCcchhh-------hcCCCCCEEEccCCcCCC-
Q 047797 241 TSIETLDLSDNHLPSSSVYPW----LFNLSRNILHLDLGFNH---LQGSIPEAF-------QHMVSLRLLSLASNELEG- 305 (927)
Q Consensus 241 ~~L~~L~Ls~n~l~~~~~~~~----l~~~~~~L~~L~Ls~n~---i~~~~~~~l-------~~l~~L~~L~Ls~n~l~~- 305 (927)
++|++|+|++|.+++ ..+.. +..+. +|++|++++|. +++.+|..+ ..+++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGT-EAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEECTTSEECH-HHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEECCCCCCCH-HHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 777888888777754 33322 22344 77777777753 334445444 567777777777777775
Q ss_pred ---cCcccccCCCCCcEEeCCCCCCCCchhHHHhhc-------------cCCCcCCCccEEEccCCCCc-ccCC---C-C
Q 047797 306 ---GIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNL-------------SSGCTVNSLEGLCLYANDIT-GPIP---D-L 364 (927)
Q Consensus 306 ---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------------~~~~~~~~L~~L~L~~n~l~-~~~~---~-l 364 (927)
.+|..+..+++|++|++++|.++...+..+... + +|++|++++|.++ +..+ . +
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP------PLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------CCCEEECCSSCCTGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC------CCcEEECCCCCCCcHHHHHHHHHH
Confidence 356667777777777777777765444433332 4 6777777777665 2333 1 4
Q ss_pred CCCCCCCEEEccCCcCCC-----cchhhhhccCCCCEEecCCcccc----cccChhhhhcCCCCCEEEccCCcceecc--
Q 047797 365 GRFLSLKVLKLGENHLNG-----TINKSLSHLFKLETLSLDGNSFT----GVISETFFSNMSNLQMLFLADNSLTLKL-- 433 (927)
Q Consensus 365 ~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~-- 433 (927)
..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.+|. .+..+++|++|++++|.++...
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHH
Confidence 456667777777776652 23335666667777777777664 33444 3566666777777776665431
Q ss_pred --cCCc--ccccccceeecccccCCC----CCChhh-hcCccccEEEccCCccCCCc
Q 047797 434 --SHDW--VPAFQLKWLSLASCKMGP----HFPNWL-QTQNQLISLDISNIGISDTI 481 (927)
Q Consensus 434 --~~~~--~~~~~L~~L~L~~~~~~~----~~~~~l-~~~~~L~~L~Ls~n~l~~~~ 481 (927)
+..+ ..+++|++|++++|.+.. .+|..+ .++++|++|++++|.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 2222 124455555555555544 244444 33455555555555555444
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-19 Score=181.95 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=62.6
Q ss_pred ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617 (927)
Q Consensus 538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 617 (927)
+.++.+++.++.+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34555555565555433 2356666666666655444445555556666666555554444445555555555555555
Q ss_pred CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
+++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 88 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 88 LQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 5322222222 3444444444444444333333344444444444444443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1e-19 Score=209.52 Aligned_cols=43 Identities=30% Similarity=0.281 Sum_probs=20.8
Q ss_pred CEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccC
Q 047797 756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL 799 (927)
Q Consensus 756 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 799 (927)
+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 44555555554 23444444555555555555555544444433
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.2e-19 Score=206.79 Aligned_cols=182 Identities=26% Similarity=0.367 Sum_probs=132.4
Q ss_pred CCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEc
Q 047797 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638 (927)
Q Consensus 559 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L 638 (927)
+|+.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +. . +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEEC
Confidence 56666666666664 444432 56777777777766 445 345677777777777754 665 43 2 7777778
Q ss_pred cCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeee
Q 047797 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWK 718 (927)
Q Consensus 639 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (927)
++|++++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~----------------------------------------- 158 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L----------------------------------------- 158 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence 7777776 454 57788888888888875 443 1
Q ss_pred cccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC-------CeEeCCCCcCcc
Q 047797 719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL-------DFLDLSRNHFSG 791 (927)
Q Consensus 719 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~ 791 (927)
+++|+.|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 159 ---------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 159 ---------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp ---------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred ---------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 2244888889998887 565 65 88999999999998 5566 654 77 99999999999
Q ss_pred cCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797 792 NIPSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 792 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
.+|..+..+++|++|++++|++++.+|.
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5888888899999999999999998774
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3.8e-19 Score=195.10 Aligned_cols=235 Identities=19% Similarity=0.131 Sum_probs=171.1
Q ss_pred ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCC-ccccCCCCCCE-EecCC
Q 047797 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP-SSLKNCSKLRV-LDLRK 615 (927)
Q Consensus 538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~-L~Ls~ 615 (927)
++++.++++++.+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888999988766 3578899999999987666778889999999999998866554 56788888765 55667
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccc-cccccccchhhccccccccccCCCCccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL-NNISGKIPKCFSNFSMMIQEKSSNPIIGLA 694 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 694 (927)
|++.+..|..+. .+++|++|++++|++.+..+..+....++..+++++ |++....+..|..+.
T Consensus 90 N~l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------- 153 (350)
T 4ay9_X 90 NNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 153 (350)
T ss_dssp TTCCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred CcccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence 888544455444 688888888888888876666666777788888866 455533333343322
Q ss_pred cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccc-ccccccCCccc
Q 047797 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSR-NNLTGLIPPKI 773 (927)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l 773 (927)
..++.|+|++|+|+.+.+..| ...+|++|++++ |.++.+.++.|
T Consensus 154 ----------------------------------~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 154 ----------------------------------FESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp ----------------------------------SSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTT
T ss_pred ----------------------------------hhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHh
Confidence 235899999999987555544 567899999985 66775555678
Q ss_pred cCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcc
Q 047797 774 GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNA 828 (927)
Q Consensus 774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~ 828 (927)
.++++|++|||++|+|+...+..| .+|+.|.+.+++--..+|.-..+..+..
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred ccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhh
Confidence 999999999999999996544444 4566777666655567776444555543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.2e-19 Score=177.54 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=126.7
Q ss_pred cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccc
Q 047797 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595 (927)
Q Consensus 517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 595 (927)
+.++.+++.++......++++++|++++|++++++. .+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 345666666665555557789999999999999664 5678999999999999999777777899999999999999999
Q ss_pred ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669 (927)
Q Consensus 596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 669 (927)
+..+..|..+++|++|++++|++.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 87777789999999999999999654444444 79999999999999997777778888999999998887764
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.8e-19 Score=195.91 Aligned_cols=162 Identities=26% Similarity=0.234 Sum_probs=107.8
Q ss_pred CCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797 608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS 687 (927)
Q Consensus 608 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 687 (927)
++.|+|++|++++..+..+...+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.+++.
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~------- 113 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA------- 113 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-------
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC-------
Confidence 4555555555533222222113556666666666666555556666777777777777776555545544433
Q ss_pred CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797 688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767 (927)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 767 (927)
|+.|+|++|+|++..|..|.++++|+.|+|++|+|++
T Consensus 114 -------------------------------------------L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 114 -------------------------------------------LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp -------------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred -------------------------------------------CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 3777777777777777778888888888888888886
Q ss_pred cCCccc---cCCCCCCeEeCCCCcCcccCCccccCCCC--CCeEeCcCCcCcccCCC
Q 047797 768 LIPPKI---GQLKSLDFLDLSRNHFSGNIPSSLSLLSG--LSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 768 ~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~~~~p~ 819 (927)
..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.|.|..
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 555555 56888888888888888666667777776 48899999999888764
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.5e-18 Score=177.68 Aligned_cols=157 Identities=25% Similarity=0.243 Sum_probs=130.8
Q ss_pred CCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797 608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS 687 (927)
Q Consensus 608 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 687 (927)
-+.++.+++.+ +.+|..+ .++|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..++.
T Consensus 21 ~~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~------- 89 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ------- 89 (229)
T ss_dssp TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CCEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence 45677777776 5666543 367888888888888777788888888888888888887555555555444
Q ss_pred CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797 688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767 (927)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 767 (927)
|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 90 -------------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 90 -------------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp -------------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred -------------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence 489999999998888888899999999999999999
Q ss_pred cCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797 768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 768 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
.+|..+..+++|++|+|++|++++..+..|..+++|++|++++|++.|.|+.
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 6788999999999999999999988778899999999999999999999873
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.9e-18 Score=181.49 Aligned_cols=171 Identities=26% Similarity=0.342 Sum_probs=100.6
Q ss_pred ccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCE
Q 047797 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659 (927)
Q Consensus 580 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 659 (927)
.+++|+.|++++|.+... + .+..+++|++|++++|++.+ ++. +. .+++|++|++++|.+++ + ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 344455555555544422 2 24445555555555555533 222 22 45555555555555543 2 23556666666
Q ss_pred EEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC
Q 047797 660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN 739 (927)
Q Consensus 660 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 739 (927)
|++++|++++. ..+.. +++|+.|++++|
T Consensus 117 L~L~~n~i~~~--~~l~~--------------------------------------------------l~~L~~L~l~~n 144 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVH--------------------------------------------------LPQLESLYLGNN 144 (291)
T ss_dssp EECTTSCCCCC--GGGGG--------------------------------------------------CTTCCEEECCSS
T ss_pred EECCCCcCCCC--hhhcC--------------------------------------------------CCCCCEEEccCC
Confidence 66666666542 12222 233467777777
Q ss_pred cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797 740 KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815 (927)
Q Consensus 740 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 815 (927)
++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus 145 ~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 145 KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77664 456777777777777777776544 77777777777777777753 3 37777777778877777765
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=172.61 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=121.5
Q ss_pred cEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccc
Q 047797 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL 664 (927)
Q Consensus 585 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 664 (927)
+.+++++|.++. +|..+. +.+++|++++|++++..|...+..+++|++|++++|++++..+..+.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666666653 444332 34567777777775544433333677888888888888877777888888899999999
Q ss_pred cccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccccc
Q 047797 665 NNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA 744 (927)
Q Consensus 665 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 744 (927)
|++++..+..|.+++.| ++|+|++|++++.
T Consensus 91 N~l~~~~~~~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 91 NRLENVQHKMFKGLESL--------------------------------------------------KTLMLRSNRITCV 120 (220)
T ss_dssp SCCCCCCGGGGTTCSSC--------------------------------------------------CEEECTTSCCCCB
T ss_pred CccCccCHhHhcCCcCC--------------------------------------------------CEEECCCCcCCeE
Confidence 98887777666655444 8999999999998
Q ss_pred CccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCC
Q 047797 745 IPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794 (927)
Q Consensus 745 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 794 (927)
.|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus 121 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 89999999999999999999999989999999999999999999986544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.7e-18 Score=184.17 Aligned_cols=186 Identities=27% Similarity=0.363 Sum_probs=135.7
Q ss_pred EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF 619 (927)
Q Consensus 540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 619 (927)
+.+..+.++++. .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|++.
T Consensus 29 ~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 29 DNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HHhcCCCccccc-chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 344444554421 234567778888888877643 3 46777888888888888876544 777888888888888874
Q ss_pred CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797 620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699 (927)
Q Consensus 620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 699 (927)
+ +|. +. .+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..
T Consensus 104 ~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~---------------------- 154 (291)
T 1h6t_A 104 D-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR---------------------- 154 (291)
T ss_dssp C-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG----------------------
T ss_pred C-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc----------------------
Confidence 3 443 44 678888888888888754 4577888888888888888754 23333
Q ss_pred ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 779 (927)
+++|+.|++++|++++..| +..+++|++|++++|++++. +.+..+++|
T Consensus 155 ----------------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L 202 (291)
T 1h6t_A 155 ----------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 202 (291)
T ss_dssp ----------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTC
T ss_pred ----------------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCC
Confidence 3445888999998887665 88899999999999999875 358889999
Q ss_pred CeEeCCCCcCcc
Q 047797 780 DFLDLSRNHFSG 791 (927)
Q Consensus 780 ~~L~Ls~N~l~~ 791 (927)
+.|++++|+++.
T Consensus 203 ~~L~l~~n~i~~ 214 (291)
T 1h6t_A 203 DVLELFSQECLN 214 (291)
T ss_dssp SEEEEEEEEEEC
T ss_pred CEEECcCCcccC
Confidence 999999999875
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.4e-18 Score=172.48 Aligned_cols=113 Identities=23% Similarity=0.323 Sum_probs=94.6
Q ss_pred ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 809 (927)
+|++|+|++|++++.+|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 44888888888888888899999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCCcCCCCcccccCCCCCCCCCCC
Q 047797 810 YNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL 842 (927)
Q Consensus 810 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 842 (927)
+|++.|.|+......++....+.++...|+.|.
T Consensus 135 ~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 999999988654444444444555655666553
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.2e-17 Score=194.73 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=126.1
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
+..|+.|++++|.+..+| .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. | .+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEe
Confidence 346777788888877776 47778888888888888876544 77888888888888888752 3 5778888888888
Q ss_pred CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797 614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693 (927)
Q Consensus 614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 693 (927)
++|++.+ ++ .+. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..++
T Consensus 117 s~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-------------- 175 (605)
T 1m9s_A 117 EHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-------------- 175 (605)
T ss_dssp TTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT--------------
T ss_pred cCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC--------------
Confidence 8888854 43 344 578888888888888764 567778888888888888876554 44333
Q ss_pred ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccccccc
Q 047797 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768 (927)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 768 (927)
+|+.|+|++|+|++. ..+..+++|+.|+|++|++++.
T Consensus 176 ------------------------------------~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 176 ------------------------------------KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ------------------------------------TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ------------------------------------CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 347888888888764 3577788888888888887765
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=9.1e-18 Score=195.79 Aligned_cols=191 Identities=26% Similarity=0.346 Sum_probs=147.5
Q ss_pred CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616 (927)
Q Consensus 537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 616 (927)
+..+.+..+.+..+. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 344556666666632 245778899999999998743 3 58888999999999999986655 888999999999999
Q ss_pred cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccc
Q 047797 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE 696 (927)
Q Consensus 617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 696 (927)
++.+ +| .+. .+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..
T Consensus 98 ~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~------------------- 151 (605)
T 1m9s_A 98 KIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR------------------- 151 (605)
T ss_dssp CCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGS-------------------
T ss_pred CCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcc-------------------
Confidence 8854 44 444 688899999999988863 4578888999999999888754 23333
Q ss_pred cccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC
Q 047797 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL 776 (927)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 776 (927)
+++|+.|+|++|++++.+| +..+++|+.|+|++|+|++. +.+..+
T Consensus 152 -------------------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l 196 (605)
T 1m9s_A 152 -------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGL 196 (605)
T ss_dssp -------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTC
T ss_pred -------------------------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccC
Confidence 3445888899998888766 88888899999999988875 468888
Q ss_pred CCCCeEeCCCCcCcccC
Q 047797 777 KSLDFLDLSRNHFSGNI 793 (927)
Q Consensus 777 ~~L~~L~Ls~N~l~~~~ 793 (927)
++|+.|+|++|++++..
T Consensus 197 ~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 197 KNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCSEEECCSEEEECCC
T ss_pred CCCCEEEccCCcCcCCc
Confidence 88889999988887653
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=183.87 Aligned_cols=130 Identities=28% Similarity=0.256 Sum_probs=82.9
Q ss_pred ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCccc-ccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG-FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616 (927)
Q Consensus 538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 616 (927)
+.+++++++++.+|..+. +.++.|+|++|++++..+..|. .+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 3466677777776666665565 6667777777777776666666666677777777777
Q ss_pred cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccc
Q 047797 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK 670 (927)
Q Consensus 617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 670 (927)
++.+..+..+. .+++|++|+|++|++++..|..+..+++|++|+|++|++++.
T Consensus 99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 66433333333 566677777777766666666666667777777777766643
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=7.4e-18 Score=176.34 Aligned_cols=171 Identities=21% Similarity=0.264 Sum_probs=127.0
Q ss_pred ccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCE
Q 047797 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659 (927)
Q Consensus 580 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 659 (927)
.+.++..+++++|.+++.. .+..+++|++|++++|.+ ..+| .+. .+++|++|++++|++++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i-~~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI-QSLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCC-CCCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCc-ccch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3556666777777776443 466777777777777777 3455 344 57788888888888775544 778888888
Q ss_pred EEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC
Q 047797 660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN 739 (927)
Q Consensus 660 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 739 (927)
|++++|++++. |... . +.|+.|++++|
T Consensus 90 L~L~~N~l~~l-~~~~-~---------------------------------------------------~~L~~L~L~~N 116 (263)
T 1xeu_A 90 LSVNRNRLKNL-NGIP-S---------------------------------------------------ACLSRLFLDNN 116 (263)
T ss_dssp EECCSSCCSCC-TTCC-C---------------------------------------------------SSCCEEECCSS
T ss_pred EECCCCccCCc-Cccc-c---------------------------------------------------CcccEEEccCC
Confidence 88888887742 2110 0 24588888888
Q ss_pred cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797 740 KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK 816 (927)
Q Consensus 740 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 816 (927)
++++. + .+.++++|++|+|++|++++. +.+..+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 117 ~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 117 ELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88774 3 588889999999999998876 3688889999999999999876 6688888999999999988876
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4.5e-20 Score=214.07 Aligned_cols=190 Identities=24% Similarity=0.240 Sum_probs=116.0
Q ss_pred cCCCCCEEEccCccccccCCCcccccCcccEEEccccc-------------ccccCCccccCCCCCCEEe-cCCCcCCCC
Q 047797 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR-------------LNGELPSSLKNCSKLRVLD-LRKNALFGE 621 (927)
Q Consensus 556 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~ 621 (927)
.+++|+.|+|++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 3455666666666665 445556666666666665543 3344555555555666555 444322
Q ss_pred CChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccccc
Q 047797 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP 701 (927)
Q Consensus 622 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 701 (927)
..|+.+.+++|.++...+ ..|+.|+|++|.+++ +|. +++++.
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~--------------------- 464 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLL--------------------- 464 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTT---------------------
T ss_pred ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-cccccc---------------------
Confidence 233334444555543221 136777777777764 443 444333
Q ss_pred ccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCe
Q 047797 702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF 781 (927)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 781 (927)
|+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .++++++|+.
T Consensus 465 -----------------------------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~ 512 (567)
T 1dce_A 465 -----------------------------VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE 512 (567)
T ss_dssp -----------------------------CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred -----------------------------CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence 377777777776 566677777777777777777775 45 6777777777
Q ss_pred EeCCCCcCcccC-CccccCCCCCCeEeCcCCcCcccCCC
Q 047797 782 LDLSRNHFSGNI-PSSLSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 782 L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
|+|++|++++.+ |..+..+++|++|++++|++++..|.
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 777777777665 77777777777777777777766553
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=8.2e-17 Score=163.50 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=134.3
Q ss_pred cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccc
Q 047797 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595 (927)
Q Consensus 517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 595 (927)
+.++++++.++......+.+++.|++++|+++++| ..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 45666677666554455678999999999999965 47889999999999999999998999999999999999999999
Q ss_pred ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669 (927)
Q Consensus 596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 669 (927)
...+..|.++++|++|+|++|++.+..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++..
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777789999999999999999777777776 79999999999999998888889999999999999999874
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=9.6e-20 Score=211.28 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=169.8
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCcc-------------ccccCCCcccccCcccEEE-cccccccccCC
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNR-------------FSGKIPDSMGFLHNIQTLS-LRNNRLNGELP 599 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~ 599 (927)
.+.|+.|++++|+++.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---- 423 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH----
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc----
Confidence 568999999999999999999999999999998875 5667778889999999999 7877654
Q ss_pred ccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhcccc
Q 047797 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFS 679 (927)
Q Consensus 600 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 679 (927)
+|+.+.+++|.+. .+| ...|+.|++++|.+++ +|. +..+++|+.|+|++|+++ .+|..+++++
T Consensus 424 -------~L~~l~l~~n~i~-~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 -------DLRSKFLLENSVL-KME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp -------HHHHHHHHHHHHH-HHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred -------hhhhhhhhccccc-ccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 3455666777662 122 2358999999999986 565 899999999999999998 7788777665
Q ss_pred ccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEe
Q 047797 680 MMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALN 759 (927)
Q Consensus 680 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 759 (927)
.| +.|+|++|+|++ +| .++++++|++|+
T Consensus 487 ~L--------------------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 487 CL--------------------------------------------------EVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp TC--------------------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred CC--------------------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 55 999999999998 66 899999999999
Q ss_pred cccccccccC-CccccCCCCCCeEeCCCCcCcccCCcc---ccCCCCCCeEeC
Q 047797 760 LSRNNLTGLI-PPKIGQLKSLDFLDLSRNHFSGNIPSS---LSLLSGLSVLDL 808 (927)
Q Consensus 760 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l 808 (927)
|++|+|++.+ |..++.+++|+.|+|++|++++..|.. +..+++|+.||+
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999987 999999999999999999999876643 344789999875
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.5e-17 Score=162.60 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=49.5
Q ss_pred eEEEccCCcccccCccccccccCCCEEeccccc-ccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN-LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY 810 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 810 (927)
+.|++++|++++..|..++++++|++|++++|+ ++. +| .+..+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 666666666666566666666677777777776 443 33 56667777777777777764 33 566677777777777
Q ss_pred CcCcc
Q 047797 811 NSLSG 815 (927)
Q Consensus 811 N~l~~ 815 (927)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 76543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.2e-16 Score=161.49 Aligned_cols=155 Identities=21% Similarity=0.214 Sum_probs=135.6
Q ss_pred CcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccc
Q 047797 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594 (927)
Q Consensus 516 l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 594 (927)
.+.++.+++.+.......+++|++|++++|+++++ |..+..+++|++|+|++|.++...+..|..+++|++|+|++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34566666666655555678999999999999994 77889999999999999999877777889999999999999999
Q ss_pred cccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797 595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672 (927)
Q Consensus 595 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 672 (927)
++..+..|..+++|++|++++|++. .+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9888888999999999999999995 8888886 79999999999999998777889999999999999999986543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.4e-17 Score=160.59 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred cccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCC
Q 047797 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQ 658 (927)
Q Consensus 579 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 658 (927)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+ ..+. .+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45566677777777666 344 4666777777777777552 22 2444 577777777777777776777777888888
Q ss_pred EEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccC
Q 047797 659 VLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSS 738 (927)
Q Consensus 659 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 738 (927)
+|++++|++++..|..+..++.| +.|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L--------------------------------------------------~~L~L~~ 145 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKV--------------------------------------------------NSIDLSY 145 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSC--------------------------------------------------CEEECCS
T ss_pred EEEecCCccCcHhHHHHhhCCCC--------------------------------------------------CEEEccC
Confidence 88888888877666666554443 7888888
Q ss_pred Cc-ccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797 739 NK-LCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791 (927)
Q Consensus 739 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 791 (927)
|+ ++. +| .+.++++|++|++++|++++. + .+..+++|++|++++|++.+
T Consensus 146 n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 146 NGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 87 544 44 578888888999999888864 3 68888889999999888764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=5.6e-17 Score=160.95 Aligned_cols=155 Identities=25% Similarity=0.294 Sum_probs=114.3
Q ss_pred CEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCc-cccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797 609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPF-QLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS 687 (927)
Q Consensus 609 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 687 (927)
+++++++|.+ +.+|..+. .++++|++++|++++..+. .+..+++|++|+|++|++++..|..|.+++.|
T Consensus 11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 5667777766 55665443 3677777777777765554 37778888888888888887777777665544
Q ss_pred CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797 688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767 (927)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 767 (927)
+.|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 81 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 81 --------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp --------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred --------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence 888888888888888888899999999999999999
Q ss_pred cCCccccCCCCCCeEeCCCCcCcccCCcc-ccCCCCCCeEeCcCCcCcccCCC
Q 047797 768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSS-LSLLSGLSVLDLSYNSLSGKIPL 819 (927)
Q Consensus 768 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 819 (927)
.+|..+..+++|++|+|++|.+++..+.. +. ..++...+..+...|.-|.
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred eCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence 99999999999999999999998765422 11 1123334555666666664
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.1e-17 Score=172.88 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=67.2
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 615 (927)
++..++++++.+++++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 3445566666666654 45566666666666666653 33 45666666666666666664433 56666666666666
Q ss_pred CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
|++.+ +|... . ++|++|++++|++++. ..+..+++|++|++++|+++
T Consensus 95 N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 95 NRLKN-LNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp SCCSC-CTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CccCC-cCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 66633 33211 1 4555555555555532 23445555555555555544
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=161.92 Aligned_cols=135 Identities=26% Similarity=0.322 Sum_probs=108.6
Q ss_pred cEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeeccee
Q 047797 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV 713 (927)
Q Consensus 634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
+++++++|.++ .+|..+. ++|++|++++|+++ .+|..|.+++.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~--------------------------------- 55 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKH--------------------------------- 55 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTT---------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccC---------------------------------
Confidence 45666666665 3444332 46777888888876 45555555443
Q ss_pred EEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797 714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793 (927)
Q Consensus 714 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 793 (927)
|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..
T Consensus 56 -----------------L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 56 -----------------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp -----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred -----------------CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 488888888888888888999999999999999999998889999999999999999999877
Q ss_pred CccccCCCCCCeEeCcCCcCcccCCCCCc
Q 047797 794 PSSLSLLSGLSVLDLSYNSLSGKIPLGTQ 822 (927)
Q Consensus 794 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 822 (927)
+..|..+++|++|++++|++.|.|+..+.
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred hhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence 77899999999999999999999875443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.5e-17 Score=199.27 Aligned_cols=191 Identities=24% Similarity=0.271 Sum_probs=111.9
Q ss_pred EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF 619 (927)
Q Consensus 540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 619 (927)
++++.|.+...|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 44555555555667778888888888888887 56666678888888888888888 77888888888888888888886
Q ss_pred CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797 620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699 (927)
Q Consensus 620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 699 (927)
.+|..+. .+++|++|+|++|.++ .+|..|..+++|++|+|++|++++.+|..+..+...
T Consensus 284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------ 342 (727)
T 4b8c_D 284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------ 342 (727)
T ss_dssp -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------
T ss_pred -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------
Confidence 7787776 6888888888888886 667778888889999999999888888777654322
Q ss_pred ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccc--------cccccCCc
Q 047797 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN--------NLTGLIPP 771 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~ 771 (927)
...++|++|.+++.+|.. |+.|++++| .+.+..+.
T Consensus 343 -------------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~ 385 (727)
T 4b8c_D 343 -------------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEH 385 (727)
T ss_dssp -------------------------------HHHHHHHHCCCCCCCCCC-------------------------------
T ss_pred -------------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccc
Confidence 023667778887777653 345556665 44444444
Q ss_pred cccCCCCCCeEeCCCCcCc
Q 047797 772 KIGQLKSLDFLDLSRNHFS 790 (927)
Q Consensus 772 ~l~~l~~L~~L~Ls~N~l~ 790 (927)
.+..+..++...+++|-+.
T Consensus 386 ~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 386 LATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------CCC
T ss_pred hhhcccccceeeeeccccc
Confidence 5555566666666666664
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.5e-17 Score=199.07 Aligned_cols=221 Identities=20% Similarity=0.217 Sum_probs=125.2
Q ss_pred CCceEeCcCCCCCCCCcccccCCCCC-----EEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCE
Q 047797 536 NSTFLNLSKNKFSGLPDCWLNFNSLS-----ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRV 610 (927)
Q Consensus 536 ~L~~L~L~~n~l~~lp~~~~~l~~L~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 610 (927)
.++.|++.+|.+..++..+.....|. .++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 35566666666666554332222222 2333444444 55778999999999999999998 67777779999999
Q ss_pred EecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCc
Q 047797 611 LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPI 690 (927)
Q Consensus 611 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 690 (927)
|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..|++++.|
T Consensus 252 L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L--------- 318 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL--------- 318 (727)
T ss_dssp CBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC---------
T ss_pred EEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc---------
Confidence 999999996 8998886 7999999999999999 77999999999999999999997 677777765555
Q ss_pred cccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC-CCEEecccccccccC
Q 047797 691 IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG-LTALNLSRNNLTGLI 769 (927)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~ 769 (927)
+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+
T Consensus 319 -----------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 319 -----------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp -----------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred -----------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 99999999999999988866532 234889999999988
Q ss_pred CccccCCCCCCeEeCCCC--------cCcccCCccccCCCCCCeEeCcCCcCcccCC
Q 047797 770 PPKIGQLKSLDFLDLSRN--------HFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP 818 (927)
Q Consensus 770 p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 818 (927)
|.. |+.|++++| .+.+..+..+..+..+....+++|-+.+...
T Consensus 358 p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 358 PHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp CCC-----------------------------------------------CCCGGGC
T ss_pred ccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 864 556777777 4555555566777778888899998875443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=3.6e-16 Score=169.83 Aligned_cols=74 Identities=11% Similarity=0.014 Sum_probs=53.3
Q ss_pred eEEEccCCcccccCccccccccCCC-EEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEe
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLT-ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLD 807 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 807 (927)
+.|+|++| ++.+.+..|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 67777776 6666666777777777 777776 66666667777777777777777777766666777777777764
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.2e-15 Score=165.59 Aligned_cols=261 Identities=13% Similarity=0.088 Sum_probs=138.9
Q ss_pred CccEEEccCCCCc--ccCCCCCCCCCCCEEEccCCcCCCcchhhhhc--------cCCCCEEecCCcccccccChhhhhc
Q 047797 346 SLEGLCLYANDIT--GPIPDLGRFLSLKVLKLGENHLNGTINKSLSH--------LFKLETLSLDGNSFTGVISETFFSN 415 (927)
Q Consensus 346 ~L~~L~L~~n~l~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~~~ 415 (927)
+|+.|+|++|++. ...+. .++.++.+.+..|.+ .+..|.+ +++|++|++.+ .++ .++...|.+
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~ 122 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKG 122 (329)
T ss_dssp TCCEEEEEEEEECCEEESSS--SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTT
T ss_pred cCeEEecCcceeEEecCccc--ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhc
Confidence 5666666666555 21111 222234444444432 2334555 77788877777 665 566667777
Q ss_pred CCCCCEEEccCCcceecccCCcccccccceeeccccc----CCCCCChhhhcCcccc-EEEccCCccCCCccchHHhhcc
Q 047797 416 MSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK----MGPHFPNWLQTQNQLI-SLDISNIGISDTIPDWFWDLSI 490 (927)
Q Consensus 416 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~----~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~~ 490 (927)
+++|+.+++.+|.+..+.+..|..+.++..+...... ........|.++..|+ .+.+... +.++..++....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~ 199 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGL 199 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhccc
Confidence 7888888887777777777777766666665554421 1222233455555555 4444332 123332222110
Q ss_pred ccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCccc-ccCCCCCEEEccCcc
Q 047797 491 ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCW-LNFNSLSILNLANNR 569 (927)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~ 569 (927)
.. .+++.+.+.++-...-...+ ..+++|+.+++++|+
T Consensus 200 ---------------------~~---------------------~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 200 ---------------------QP---------------------RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp ---------------------CG---------------------GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred ---------------------Cc---------------------cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence 00 11112222111000000011 125666666666666
Q ss_pred ccccCCCcccccCcccEEEcccccccccCCccccCCCCCC-EEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecC
Q 047797 570 FSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLR-VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP 648 (927)
Q Consensus 570 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 648 (927)
++.+.+.+|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .+ ..++...+..+++|+.+++++|+++...+
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCEEEeCCCccCccch
Confidence 66555556666666777776666 5556666666666676 666666 44 33433333356666666666666666666
Q ss_pred ccccCCCCCCEEE
Q 047797 649 FQLCHLAFIQVLD 661 (927)
Q Consensus 649 ~~l~~l~~L~~L~ 661 (927)
..|.++++|+.+.
T Consensus 315 ~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCCCEEE
T ss_pred hhhcCCcchhhhc
Confidence 6666666666664
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.4e-15 Score=147.22 Aligned_cols=89 Identities=25% Similarity=0.238 Sum_probs=78.4
Q ss_pred eeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY 810 (927)
Q Consensus 731 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 810 (927)
|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 37888888888877777788999999999999999988888889999999999999999977777788899999999999
Q ss_pred CcCcccCCC
Q 047797 811 NSLSGKIPL 819 (927)
Q Consensus 811 N~l~~~~p~ 819 (927)
|++.|.+|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 999998873
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3e-15 Score=145.19 Aligned_cols=82 Identities=30% Similarity=0.297 Sum_probs=36.0
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccC-CccccCCCCCCeEeCCCCcCcccCC---ccccCCCCCCeEe
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI-PPKIGQLKSLDFLDLSRNHFSGNIP---SSLSLLSGLSVLD 807 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ 807 (927)
+.|++++|++++.+|..+.++++|++|+|++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 34444444443333333444444444444444444321 1344444444444444444443332 2444445555555
Q ss_pred CcCCcC
Q 047797 808 LSYNSL 813 (927)
Q Consensus 808 ls~N~l 813 (927)
+++|.+
T Consensus 154 l~~n~~ 159 (168)
T 2ell_A 154 GYDRED 159 (168)
T ss_dssp TEETTS
T ss_pred CCCCCh
Confidence 555444
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.9e-15 Score=146.62 Aligned_cols=138 Identities=25% Similarity=0.249 Sum_probs=119.5
Q ss_pred CCCCCEEecCCCcCC-CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhcccccccc
Q 047797 605 CSKLRVLDLRKNALF-GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ 683 (927)
Q Consensus 605 l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 683 (927)
.++|++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.+++.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-- 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-- 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence 478999999999997 68888765 799999999999999876 788999999999999999998777766655444
Q ss_pred ccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccC-ccccccccCCCEEeccc
Q 047797 684 EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI-PEEITDLVGLTALNLSR 762 (927)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~-p~~~~~l~~L~~L~Ls~ 762 (927)
+.|++++|++++.. +..+.++++|++|++++
T Consensus 98 ------------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 98 ------------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp ------------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred ------------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 99999999998853 37899999999999999
Q ss_pred ccccccCC---ccccCCCCCCeEeCCCCcCcccCCcc
Q 047797 763 NNLTGLIP---PKIGQLKSLDFLDLSRNHFSGNIPSS 796 (927)
Q Consensus 763 N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~ 796 (927)
|.+++..+ ..+..+++|++||+++|.+. .+|..
T Consensus 130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99997765 58999999999999999997 45544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2e-15 Score=143.19 Aligned_cols=79 Identities=29% Similarity=0.323 Sum_probs=50.5
Q ss_pred eeEEEccCCcccccCccccccccCCCEEeccccccccc-CCccccCCCCCCeEeCCCCcCcccCC---ccccCCCCCCeE
Q 047797 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL-IPPKIGQLKSLDFLDLSRNHFSGNIP---SSLSLLSGLSVL 806 (927)
Q Consensus 731 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L 806 (927)
|+.|++++|++++.+|..+.++++|++|++++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|++|
T Consensus 66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 36666666666665666666666666666666666653 23566666777777777777665544 356666777777
Q ss_pred eCc
Q 047797 807 DLS 809 (927)
Q Consensus 807 ~ls 809 (927)
|++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 665
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=5.8e-15 Score=143.05 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=83.8
Q ss_pred ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 809 (927)
.++.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34899999999999999999999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCcccCCC
Q 047797 810 YNSLSGKIPL 819 (927)
Q Consensus 810 ~N~l~~~~p~ 819 (927)
+|++.|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999999873
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=4.9e-14 Score=137.84 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=106.7
Q ss_pred CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616 (927)
Q Consensus 537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 616 (927)
.+.+++++++++.+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567788888888775543 67888888888888776677788888999999999888777777888899999999999
Q ss_pred cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672 (927)
Q Consensus 617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 672 (927)
++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFD-KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhh-CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88654444444 68899999999999987666667889999999999999987655
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=6.4e-14 Score=138.72 Aligned_cols=127 Identities=22% Similarity=0.270 Sum_probs=66.5
Q ss_pred eEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618 (927)
Q Consensus 539 ~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 618 (927)
.+++++|+++.+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++|++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444444332 34555555555554 3344555555555555555555554445555555555555555555
Q ss_pred CCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669 (927)
Q Consensus 619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 669 (927)
++..|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 91 ~~i~~~~f~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFD-GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhC-CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 433333333 45555555555555554444455566666666666666653
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=2.7e-14 Score=135.23 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=83.7
Q ss_pred CccEEEccCCcCc-CCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797 268 NILHLDLGFNHLQ-GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346 (927)
Q Consensus 268 ~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~ 346 (927)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++ +
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~ 89 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP------N 89 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT------T
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC------C
Confidence 7778888888877 66777778888888888888888765 6677888888888888888877777766666 4
Q ss_pred ccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccC--hhhhhcCCCCCEEEc
Q 047797 347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVIS--ETFFSNMSNLQMLFL 424 (927)
Q Consensus 347 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L 424 (927)
|++|++++|.+++.. .+..+..+++|++|++++|++++..+ ...+..+++|++|++
T Consensus 90 L~~L~ls~N~i~~~~----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 90 LTHLNLSGNKIKDLS----------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTSCCCSHH----------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEECCCCcCCChH----------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 444444444444321 22445555555666666555554332 124555666666655
Q ss_pred c
Q 047797 425 A 425 (927)
Q Consensus 425 ~ 425 (927)
+
T Consensus 148 ~ 148 (149)
T 2je0_A 148 Y 148 (149)
T ss_dssp B
T ss_pred C
Confidence 4
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=7e-16 Score=154.03 Aligned_cols=132 Identities=26% Similarity=0.299 Sum_probs=87.5
Q ss_pred hhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccc
Q 047797 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704 (927)
Q Consensus 625 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 704 (927)
.+. .+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 43 ~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~------------------------- 93 (198)
T 1ds9_A 43 TLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD------------------------- 93 (198)
T ss_dssp HHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH-------------------------
T ss_pred HHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC-------------------------
Confidence 444 56666666666666664 44 6666677777777777766 3444443333
Q ss_pred eeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCC-ccccCCCCCCeEe
Q 047797 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIP-PKIGQLKSLDFLD 783 (927)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 783 (927)
+|+.|++++|++++ +| .+.++++|++|++++|++++..+ ..+..+++|++|+
T Consensus 94 -------------------------~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 94 -------------------------TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp -------------------------HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred -------------------------cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 33777777777766 33 57777778888888887775432 4577778888888
Q ss_pred CCCCcCcccCCcc----------ccCCCCCCeEeCcCCcCc
Q 047797 784 LSRNHFSGNIPSS----------LSLLSGLSVLDLSYNSLS 814 (927)
Q Consensus 784 Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 814 (927)
+++|++++.+|.. +..+++|++|| +|+++
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888887766553 67778888876 55554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.5e-15 Score=151.52 Aligned_cols=132 Identities=22% Similarity=0.233 Sum_probs=72.3
Q ss_pred cccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccc
Q 047797 601 SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSM 680 (927)
Q Consensus 601 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 680 (927)
.+..+++|++|++++|++.+ +| .+. .+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~- 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV- 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH-
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC-
Confidence 44445555555555555533 44 333 3555555555555555 344444445556666666666554 22 233322
Q ss_pred cccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCc-cccccccCCCEEe
Q 047797 681 MIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP-EEITDLVGLTALN 759 (927)
Q Consensus 681 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~ 759 (927)
+|+.|++++|++++..+ ..+..+++|++|+
T Consensus 116 -------------------------------------------------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 116 -------------------------------------------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp -------------------------------------------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred -------------------------------------------------CCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 23666666666655332 3566677777777
Q ss_pred cccccccccCCcc----------ccCCCCCCeEeCCCCcCc
Q 047797 760 LSRNNLTGLIPPK----------IGQLKSLDFLDLSRNHFS 790 (927)
Q Consensus 760 Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~ 790 (927)
+++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777776655543 66677777776 56554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.3e-13 Score=134.50 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=109.6
Q ss_pred CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613 (927)
Q Consensus 534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 613 (927)
+.+|++|++++|+++.+|......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 4578888888888888865433445999999999999975 67889999999999999999776666789999999999
Q ss_pred CCCcCCCCCCh--hhhhcCccCcEEEccCcccceecCcc----ccCCCCCCEEEcccccccc
Q 047797 614 RKNALFGEVPT--CVGGSLQNLIILRLKSNNFHGNIPFQ----LCHLAFIQVLDLSLNNISG 669 (927)
Q Consensus 614 s~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~Ls~N~l~~ 669 (927)
++|++ +.+|. .+. .+++|++|++++|++. .+|.. +..+++|+.||+++|.+..
T Consensus 96 ~~N~i-~~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCC-CCGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcC-CcchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999 66776 555 7999999999999998 45553 8899999999999998763
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.6e-13 Score=133.85 Aligned_cols=81 Identities=28% Similarity=0.345 Sum_probs=43.2
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccCCc--cccCCCCCCeEeCCCCcCcccCCcc----ccCCCCCCe
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP--KIGQLKSLDFLDLSRNHFSGNIPSS----LSLLSGLSV 805 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~ 805 (927)
+.|++++|++++..+..+.++++|++|+|++|+++. +|. .+..+++|+.|++++|+++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 444444444444333334555555555555555543 233 4555666666666666665 33442 566666666
Q ss_pred EeCcCCcCc
Q 047797 806 LDLSYNSLS 814 (927)
Q Consensus 806 L~ls~N~l~ 814 (927)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 666666554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.3e-13 Score=132.19 Aligned_cols=90 Identities=24% Similarity=0.258 Sum_probs=82.1
Q ss_pred ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 809 (927)
.|+.|+|++|+|++.+|..|.++++|++|+|++|+|++..+..|.++++|++|||++|+|++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 34899999999999989999999999999999999998877778999999999999999997777779999999999999
Q ss_pred CCcCcccCCC
Q 047797 810 YNSLSGKIPL 819 (927)
Q Consensus 810 ~N~l~~~~p~ 819 (927)
+|++.|.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999998763
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.5e-12 Score=144.88 Aligned_cols=102 Identities=11% Similarity=0.140 Sum_probs=68.5
Q ss_pred ccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCcc
Q 047797 553 CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN 632 (927)
Q Consensus 553 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 632 (927)
++..+.+|+.+.+.++ +..+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ + ..++...+.++++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L-RKIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c-cEehHHHhhCCCC
Confidence 4566777777777654 55455667778888888888644 66566777888888888888766 4 3454444446788
Q ss_pred CcEEEccCcccceecCccccCCCCCCEE
Q 047797 633 LIILRLKSNNFHGNIPFQLCHLAFIQVL 660 (927)
Q Consensus 633 L~~L~L~~n~l~~~~~~~l~~l~~L~~L 660 (927)
|+.+++..+ +. .+...|.++++|+.+
T Consensus 368 L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 888888654 22 234567777777654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1.9e-12 Score=143.34 Aligned_cols=240 Identities=12% Similarity=0.138 Sum_probs=117.1
Q ss_pred CccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEe
Q 047797 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLY 321 (927)
Q Consensus 242 ~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 321 (927)
+|+.+++..+ +. .++...|..+ +|+.+.+.. .++...+.+|.+|++|+.++++.|+++.+...+|. ..+|+.+.
T Consensus 136 ~L~~i~l~~~-i~--~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK--SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC--EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc--EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 3555555444 21 3344444444 455555553 34434444555555555555555555544444444 35555555
Q ss_pred CCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecC
Q 047797 322 LPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLD 400 (927)
Q Consensus 322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 400 (927)
+..+ ++......|.++. +|+.+++..+ ++..... |.+ .+|+.+.+. +.++.+....|.++++|+.+++.
T Consensus 210 lp~~-l~~I~~~aF~~~~------~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTS------QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCTT-CCEECTTTTTTCT------TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred eCCc-hheehhhHhhCCC------CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 5532 4444444444444 5555555543 2322222 444 455555552 33443444555556666666655
Q ss_pred Ccccc----cccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCc
Q 047797 401 GNSFT----GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIG 476 (927)
Q Consensus 401 ~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~ 476 (927)
+|.+. ..++...|.++++|+.+++. +.++.+....|..+.+|+.+.+..+ +......+|.++ +|+.+++++|.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 55432 12444455566666666665 3355555555555555555555332 333444455555 56666666555
Q ss_pred cCCCccchHHhhccccceeecccc
Q 047797 477 ISDTIPDWFWDLSIELFFLNLSNN 500 (927)
Q Consensus 477 l~~~~~~~~~~~~~~L~~L~Ls~n 500 (927)
+....+..|......++.+.+..+
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CcccccccccCCCCCccEEEeCHH
Confidence 543333333333234444444443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=3.2e-12 Score=141.53 Aligned_cols=243 Identities=14% Similarity=0.107 Sum_probs=172.2
Q ss_pred cccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCc
Q 047797 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLN 318 (927)
Q Consensus 239 ~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 318 (927)
.+..++.+.+.++-- .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+
T Consensus 111 ~~~~l~~i~ip~~i~---~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNSVK---SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTTCC---EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCccC---EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 336777777765422 5666666666 8999998876 665666778885 699999986 67767778899999999
Q ss_pred EEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEE
Q 047797 319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETL 397 (927)
Q Consensus 319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 397 (927)
.+++.+|+++......|. .. +|+.+.+..+ ++..... |.++++|+.+++..+ ++.+...+|.+ .+|+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~------~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YA------GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TC------CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred eeecCCCcceEechhhEe-ec------ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 999999988876666665 34 8888888854 5555555 888889999988875 55555666777 788888
Q ss_pred ecCCcccccccChhhhhcCCCCCEEEccCCcce-----ecccCCcccccccceeecccccCCCCCChhhhcCccccEEEc
Q 047797 398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLT-----LKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDI 472 (927)
Q Consensus 398 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L 472 (927)
.+. +.++ .++...|.++++|+.+++.+|.+. .+....|..+.+|+.+.+.. .+.......|.++++|+.+++
T Consensus 254 ~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 254 KLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 884 3454 566667888888998888887665 56667777777888887773 455555667777777777777
Q ss_pred cCCccCCCccchHHhhccccceeecccccccC
Q 047797 473 SNIGISDTIPDWFWDLSIELFFLNLSNNHISG 504 (927)
Q Consensus 473 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 504 (927)
..+ ++. ++...+..+ +|+.+++++|....
T Consensus 331 p~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 331 PAN-VTQ-INFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CTT-CCE-ECTTSSSSS-CCCEEEECCSSCCB
T ss_pred Ccc-ccE-EcHHhCCCC-CCCEEEEcCCCCcc
Confidence 554 332 333333333 66666666665543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.40 E-value=4.2e-12 Score=141.34 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=38.2
Q ss_pred CcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhcc
Q 047797 279 LQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS 339 (927)
Q Consensus 279 i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 339 (927)
++.+-..+|.+|.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++......|.++.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~ 117 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY 117 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence 3434456788888888888874 366666778888888888888654 3333333344433
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=2.1e-12 Score=124.95 Aligned_cols=108 Identities=25% Similarity=0.283 Sum_probs=82.7
Q ss_pred CcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecce
Q 047797 633 LIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN 712 (927)
Q Consensus 633 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (927)
.+.+++++|.++. +|..+ .++|++|+|++|+|++..|..|.+++.|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 4566666666653 44443 2667778888888777667666655444
Q ss_pred eEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797 713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792 (927)
Q Consensus 713 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 792 (927)
+.|||++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+++..
T Consensus 57 -------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 57 -------------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp -------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred -------------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7888888888887777788999999999999999988777899999999999999999864
Q ss_pred C
Q 047797 793 I 793 (927)
Q Consensus 793 ~ 793 (927)
.
T Consensus 118 c 118 (170)
T 3g39_A 118 C 118 (170)
T ss_dssp B
T ss_pred c
Confidence 3
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=8.1e-14 Score=152.80 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=37.8
Q ss_pred ceeEEEccCCccccc----CccccccccCCCEEeccccccccc----CCccccCCCCCCeEeCCCCcCcccCCccc
Q 047797 730 FVKYLDLSSNKLCEA----IPEEITDLVGLTALNLSRNNLTGL----IPPKIGQLKSLDFLDLSRNHFSGNIPSSL 797 (927)
Q Consensus 730 ~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 797 (927)
.|++|||++|+|++. ++..+...++|++|+|++|.|++. ++..+...++|++|||++|.|+......+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 346666666666542 234455556666666666666543 22333345667777777776664433333
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.4e-11 Score=119.54 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=51.0
Q ss_pred ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617 (927)
Q Consensus 538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 617 (927)
+.+++++|+++.+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------------- 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK------------- 79 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC-------------
Confidence 345555555555554332 44555555555554444444444444444444444444333333344
Q ss_pred CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
+++|++|+|++|++++..+..+..+++|++|+|++|++.
T Consensus 80 ------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 ------------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ------------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ------------cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444555555555544333334555556666666666655
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.3e-11 Score=135.06 Aligned_cols=88 Identities=24% Similarity=0.186 Sum_probs=67.2
Q ss_pred eeEEEccC-CcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797 731 VKYLDLSS-NKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809 (927)
Q Consensus 731 L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 809 (927)
|+.|+|++ |+|++.++..|.++++|+.|+|++|+|++.+|..|.++++|+.|||++|+|++..|..+..++ |+.|+++
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence 37777775 777777777778888888888888888887777788888888888888888866666666655 8888888
Q ss_pred CCcCcccCCC
Q 047797 810 YNSLSGKIPL 819 (927)
Q Consensus 810 ~N~l~~~~p~ 819 (927)
+|+|.|.|+.
T Consensus 112 ~N~~~c~c~l 121 (347)
T 2ifg_A 112 GNPLHCSCAL 121 (347)
T ss_dssp SSCCCCCGGG
T ss_pred CCCccCCCcc
Confidence 8888877664
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=4.2e-13 Score=147.13 Aligned_cols=187 Identities=18% Similarity=0.125 Sum_probs=100.5
Q ss_pred CCCCEEEccCccccccCCCcccc-----cCcccEEEcccccccccCCccc-cCCCCCCEEecCCCcCCCCCChhhh----
Q 047797 558 NSLSILNLANNRFSGKIPDSMGF-----LHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVG---- 627 (927)
Q Consensus 558 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~---- 627 (927)
+.|++|++++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554332222222 1456666666666553322222 2344566777777766433222222
Q ss_pred hcCccCcEEEccCccccee----cCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccccccc
Q 047797 628 GSLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGY 703 (927)
Q Consensus 628 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 703 (927)
...++|++|+|++|.++.. ++..+...++|++|+|++|.++......+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------------------------- 205 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------------------------- 205 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH--------------------------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH--------------------------
Confidence 1245677777777777542 3444567778888888888876432211111
Q ss_pred ceeeeecceeEEeeecccccccccccceeEEEccCCccccc----CccccccccCCCEEecccccccccCCccccCC---
Q 047797 704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA----IPEEITDLVGLTALNLSRNNLTGLIPPKIGQL--- 776 (927)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--- 776 (927)
.+...+.|+.|||++|.|++. ++..+...++|++|+|++|.|++.....+..+
T Consensus 206 --------------------~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~ 265 (372)
T 3un9_A 206 --------------------QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA 265 (372)
T ss_dssp --------------------HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC--
T ss_pred --------------------HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcC
Confidence 011223458888888888753 33445567889999999998876544444332
Q ss_pred C--CCCeEe--CCCCcCc
Q 047797 777 K--SLDFLD--LSRNHFS 790 (927)
Q Consensus 777 ~--~L~~L~--Ls~N~l~ 790 (927)
. .|+.+. +..|.++
T Consensus 266 ~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 266 AEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp ----CEEECCCC----CH
T ss_pred CCccchhhHhhhcCCccC
Confidence 1 155555 5555554
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.14 E-value=2e-09 Score=119.63 Aligned_cols=108 Identities=9% Similarity=0.179 Sum_probs=53.8
Q ss_pred cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCc
Q 047797 552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ 631 (927)
Q Consensus 552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~ 631 (927)
.+|.++++|+.+.+. +.+..+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ + ..+....+.+++
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCC
Confidence 345556666666664 3344344455666666666666543 44455556666666666666543 3 344444444566
Q ss_pred cCcEEEccCcccceecCccccCCCCCCEEEccccc
Q 047797 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN 666 (927)
Q Consensus 632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 666 (927)
+|+.+++.++.... ..+....+|+.+.+..|.
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 66666666554331 234455556666555443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.12 E-value=2.3e-09 Score=119.18 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=31.7
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 811 (927)
+.+++..+ ++.+....|.++.+|+++.+..+ ++.+-..+|.++++|+.+++.+|.... ..+...+.|+.+++..|
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 44444322 33333445555555555555432 443434455555555555555554331 23444455555554443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=5.7e-11 Score=129.85 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=35.9
Q ss_pred EEecCCC-cCCCCCChhhhhcCccCcEEEccC-cccceecCccccCCCCCCEEEccccccccccchhhccc
Q 047797 610 VLDLRKN-ALFGEVPTCVGGSLQNLIILRLKS-NNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF 678 (927)
Q Consensus 610 ~L~Ls~N-~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 678 (927)
.++.+++ .+ ..+|. +. .+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++
T Consensus 12 ~v~~~~~n~l-~~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGAL-DSLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (347)
T ss_dssp CEECCSSCCC-TTTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred EEEcCCCCCC-CccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence 3455555 55 34555 43 455566666654 55655555555555555555555555555555444443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.81 E-value=1.7e-07 Score=103.51 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=42.8
Q ss_pred eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCC
Q 047797 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL 800 (927)
Q Consensus 732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 800 (927)
+.+++.++.++.+....|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++.+-...|.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 66666666666656667777777777777543 55555567777777777777554 554445556554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.81 E-value=2.2e-07 Score=102.50 Aligned_cols=59 Identities=7% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797 364 LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427 (927)
Q Consensus 364 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 427 (927)
|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++...|... +|+.+.+..+
T Consensus 65 F~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~lp~~ 123 (379)
T 4h09_A 65 FNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEFPGA 123 (379)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEECCTT
T ss_pred hhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccCCCc
Confidence 556666666666543 443444455554 4666555433 22 3444445443 5666666543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=2.2e-09 Score=116.41 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=86.9
Q ss_pred ccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCcccc--CCCCCCEEEcccc--ccccccchhh
Q 047797 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC--HLAFIQVLDLSLN--NISGKIPKCF 675 (927)
Q Consensus 600 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N--~l~~~~p~~~ 675 (927)
..+..+|+|+.|+|++|.- -.++. + .+++|+.|++..|.+.......+. .+++|++|+|+.+ ...+.. .+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~-l~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN-LSIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT-CBCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG
T ss_pred HHHhcCCCCcEEEEeCCCC-ceecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH
Confidence 4455667777777777631 12332 2 367788888777776544333343 6778888887532 211110 01
Q ss_pred ccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccc---cc
Q 047797 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT---DL 752 (927)
Q Consensus 676 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~---~l 752 (927)
..+..+ .....++.|+.|+|++|.+.+..+..+. .+
T Consensus 240 ~~l~~~-----------------------------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~ 278 (362)
T 2ra8_A 240 NVFRPL-----------------------------------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278 (362)
T ss_dssp GGTGGG-----------------------------------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred HHHHHH-----------------------------------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence 010000 0001245667777777777654333332 36
Q ss_pred cCCCEEeccccccccc----CCccccCCCCCCeEeCCCCcCcccCCccccC-CCCCCeEeCcCCc
Q 047797 753 VGLTALNLSRNNLTGL----IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL-LSGLSVLDLSYNS 812 (927)
Q Consensus 753 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~ 812 (927)
++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...+++++|+
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 6777777777777653 2333345677777777777766432222322 1 2445555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=1.4e-07 Score=102.08 Aligned_cols=139 Identities=22% Similarity=0.255 Sum_probs=80.6
Q ss_pred cchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHh--hccCCCcCCCccEEEccC--CCCc
Q 047797 283 IPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQ--NLSSGCTVNSLEGLCLYA--NDIT 358 (927)
Q Consensus 283 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~~~~~~~L~~L~L~~--n~l~ 358 (927)
+...+..+++|+.|++++|.-. ..+. + .+++|++|++..+.++......+. .++ +|+.|+|+. +...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEeccccccc
Confidence 4455667778888888776311 1222 3 267788888887777655444444 344 788887753 1111
Q ss_pred cc------CCCC--CCCCCCCEEEccCCcCCCcchhhhh---ccCCCCEEecCCcccccccChhh---hhcCCCCCEEEc
Q 047797 359 GP------IPDL--GRFLSLKVLKLGENHLNGTINKSLS---HLFKLETLSLDGNSFTGVISETF---FSNMSNLQMLFL 424 (927)
Q Consensus 359 ~~------~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L 424 (927)
+. .+.+ ..+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+...... +..+++|+.|++
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 1112 3467888888887777644333333 36677888887777764322211 234567777777
Q ss_pred cCCcce
Q 047797 425 ADNSLT 430 (927)
Q Consensus 425 ~~n~l~ 430 (927)
++|.++
T Consensus 315 ~~n~i~ 320 (362)
T 2ra8_A 315 KYNYLS 320 (362)
T ss_dssp CSBBCC
T ss_pred CCCcCC
Confidence 776654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=4.2e-07 Score=93.10 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=30.4
Q ss_pred ccceeEEEccCCcccc--cCccccccccCCCEEecccccccccCCccccCCC--CCCeEeCCCCcCcccCC
Q 047797 728 LGFVKYLDLSSNKLCE--AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK--SLDFLDLSRNHFSGNIP 794 (927)
Q Consensus 728 l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p 794 (927)
++.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3445555555555554 2234444555555555555555543 2233332 45555555555544333
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=1.8e-07 Score=95.76 Aligned_cols=84 Identities=26% Similarity=0.300 Sum_probs=66.2
Q ss_pred EEccCCccc---ccCccccccccCCCEEeccccccccc--CCccccCCCCCCeEeCCCCcCcccCCccccCCC--CCCeE
Q 047797 734 LDLSSNKLC---EAIPEEITDLVGLTALNLSRNNLTGL--IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS--GLSVL 806 (927)
Q Consensus 734 LdLs~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 806 (927)
++++.|+.. +.++....++++|++|+|++|+|++. +|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677888432 33333336789999999999999984 456777899999999999999976 3455555 89999
Q ss_pred eCcCCcCcccCCC
Q 047797 807 DLSYNSLSGKIPL 819 (927)
Q Consensus 807 ~ls~N~l~~~~p~ 819 (927)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998774
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=9.5e-07 Score=86.12 Aligned_cols=44 Identities=5% Similarity=0.001 Sum_probs=22.2
Q ss_pred hhhcCCCCCEEEccCC-cCCCc----CcccccCCCCCcEEeCCCCCCCC
Q 047797 286 AFQHMVSLRLLSLASN-ELEGG----IPKFFGNMCSLNQLYLPRNKLSG 329 (927)
Q Consensus 286 ~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~ 329 (927)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 3444555555555555 44321 22334445566666666666554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=5.8e-07 Score=87.63 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=32.4
Q ss_pred CccEEEccCCcCcCC----cchhhhcCCCCCEEEc--cCCcCCCc----CcccccCCCCCcEEeCCCCCCC
Q 047797 268 NILHLDLGFNHLQGS----IPEAFQHMVSLRLLSL--ASNELEGG----IPKFFGNMCSLNQLYLPRNKLS 328 (927)
Q Consensus 268 ~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 328 (927)
.|++|+|++|.+... +...+...+.|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 556666666655432 2334555566666666 55665532 1233344456666666666553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=2.7e-06 Score=80.55 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCC----CCCcEEECCCcc-CCCCCchHHhhcCCC
Q 047797 140 KLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHL----SSLRHLDLSCIN-LTKSSDWFQVVSQLH 214 (927)
Q Consensus 140 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l~ 214 (927)
+|++||+++|.++..--..++++++|++|+|++|..++...+..++.+ ++|++|+|++|. +++ .-...+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcCC
Confidence 344444444444333333344445555555555444444344444443 245555555543 333 1223344444
Q ss_pred CCCEEEcCCC
Q 047797 215 SLKTLVLRSC 224 (927)
Q Consensus 215 ~L~~L~L~~n 224 (927)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.3e-05 Score=75.76 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=52.0
Q ss_pred CcccEEEcccccccccCCccccCCCCCCEEecCCCc-CCCCCChhhhh---cCccCcEEEccCcc-cceecCccccCCCC
Q 047797 582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA-LFGEVPTCVGG---SLQNLIILRLKSNN-FHGNIPFQLCHLAF 656 (927)
Q Consensus 582 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~---~l~~L~~L~L~~n~-l~~~~~~~l~~l~~ 656 (927)
..|+.||++++.++...-..+.++++|++|+|++|. +++.--..+.. ..++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665544555667777777777774 33222222221 02467888888774 65444445667888
Q ss_pred CCEEEccccc
Q 047797 657 IQVLDLSLNN 666 (927)
Q Consensus 657 L~~L~Ls~N~ 666 (927)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888875
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.58 E-value=8.9e-05 Score=66.97 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=49.4
Q ss_pred EEeccccccc-ccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCC
Q 047797 757 ALNLSRNNLT-GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQ 824 (927)
Q Consensus 757 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 824 (927)
.++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|+|.|.|.......
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~ 78 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA 78 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHH
Confidence 5666677665 24454443 468889999999987777778889999999999999999887543333
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.77 E-value=0.00031 Score=67.72 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=65.8
Q ss_pred cCCCCCEEEccCc-ccccc----CCCcccccCcccEEEcccccccccC----CccccCCCCCCEEecCCCcCCCCCChhh
Q 047797 556 NFNSLSILNLANN-RFSGK----IPDSMGFLHNIQTLSLRNNRLNGEL----PSSLKNCSKLRVLDLRKNALFGEVPTCV 626 (927)
Q Consensus 556 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 626 (927)
+-+.|++|+|++| .|... +.+++..-..|+.|+|++|+|.... ...+..-+.|++|+|++|.|.+..-..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456777777764 55432 2334455567777777777776432 2334455677777777777743322222
Q ss_pred hh---cCccCcEEEccCc---ccce----ecCccccCCCCCCEEEccccccc
Q 047797 627 GG---SLQNLIILRLKSN---NFHG----NIPFQLCHLAFIQVLDLSLNNIS 668 (927)
Q Consensus 627 ~~---~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~Ls~N~l~ 668 (927)
.. .-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 21 2346778888654 3322 23445666778888888877654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.64 E-value=0.0033 Score=60.59 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=18.8
Q ss_pred CCCCEEEccCCc---CCC----cchhhhhccCCCCEEecCCccc
Q 047797 368 LSLKVLKLGENH---LNG----TINKSLSHLFKLETLSLDGNSF 404 (927)
Q Consensus 368 ~~L~~L~Ls~n~---l~~----~~~~~l~~l~~L~~L~L~~n~l 404 (927)
+.|++|+|++|. +.. .+...+..-+.|+.|+++.|.+
T Consensus 126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 346666665442 221 1223455556666666665543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0032 Score=56.59 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=48.7
Q ss_pred eEEEccCCccc-ccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797 732 KYLDLSSNKLC-EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790 (927)
Q Consensus 732 ~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 790 (927)
..+|.++++++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 58999999997 35665442 46999999999999888888999999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.98 E-value=22 Score=29.45 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=19.3
Q ss_pred CCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797 575 PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614 (927)
Q Consensus 575 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 614 (927)
..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344555555555555443 333444455555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.89 E-value=31 Score=28.59 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=30.1
Q ss_pred cCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCC
Q 047797 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325 (927)
Q Consensus 278 ~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 325 (927)
.++.+-..+|.+|.+|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455556777777777777654 44455567777777777776543
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=24.77 E-value=28 Score=21.85 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHhhhhccccc
Q 047797 880 LTLGFFVGFWGVCGTLMLNRSW 901 (927)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~ 901 (927)
+++++++.|..+.+.+.||+..
T Consensus 12 ~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEccc
Confidence 3445555555555555554433
No 168
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.57 E-value=31 Score=18.81 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=7.6
Q ss_pred CCCCcccccee
Q 047797 66 KRDCCKWRGVR 76 (927)
Q Consensus 66 ~~~~c~w~gv~ 76 (927)
.+..|+|+|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 44568888864
Done!