BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047801
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution
          Length = 363

 Score = 28.5 bits (62), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 46  PENKWKSAYIIVISVLGGIAVLL 68
           PE +WK  Y +V++V+G IAV++
Sbjct: 331 PELRWKWGYPVVLAVMGVIAVIM 353


>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
          Length = 354

 Score = 28.5 bits (62), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 46  PENKWKSAYIIVISVLGGIAVLL 68
           PE +WK  Y +V++V+G IAV++
Sbjct: 322 PELRWKWGYPVVLAVMGVIAVIM 344


>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
          Length = 330

 Score = 28.5 bits (62), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 46  PENKWKSAYIIVISVLGGIAVLL 68
           PE +WK  Y +V++V+G IAV++
Sbjct: 298 PELRWKWGYPVVLAVMGVIAVIM 320


>pdb|3EZ2|A Chain A, Partition Protein-Adp Complex
 pdb|3EZ2|B Chain B, Partition Protein-Adp Complex
 pdb|3EZ6|A Chain A, Structure Of Para-Adp Complex:tetragonal Form
 pdb|3EZ6|B Chain B, Structure Of Para-Adp Complex:tetragonal Form
          Length = 398

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 27  YAILVLGIINVFKGLDILNPENKWKSAYIIVISVL-GGIAVLLEAIT 72
           YA+ +  II++++   +    +++  AY+I IS L GG++  +  ++
Sbjct: 82  YAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVS 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.145    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,675,872
Number of Sequences: 62578
Number of extensions: 93467
Number of successful extensions: 408
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)