Query 047801
Match_columns 86
No_of_seqs 112 out of 202
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4293 Predicted membrane pro 99.6 1.4E-18 2.9E-23 135.0 -7.2 82 2-83 300-382 (403)
2 cd08760 Cyt_b561_FRRS1_like Eu 99.4 5.4E-13 1.2E-17 93.6 7.0 68 3-70 122-191 (191)
3 smart00665 B561 Cytochrome b-5 98.4 1E-07 2.2E-12 63.2 2.2 38 4-41 89-129 (129)
4 PF03188 Cytochrom_B561: Eukar 98.1 4.3E-06 9.4E-11 55.2 3.7 37 6-42 95-131 (137)
5 cd08554 Cyt_b561 Eukaryotic cy 97.7 3.6E-05 7.8E-10 50.9 2.8 37 5-41 95-131 (131)
6 cd08761 Cyt_b561_CYB561D2_like 97.4 0.0002 4.4E-09 50.0 4.0 38 6-43 118-157 (183)
7 cd08766 Cyt_b561_ACYB-1_like P 92.0 0.16 3.5E-06 34.9 2.7 24 18-41 74-97 (144)
8 cd08763 Cyt_b561_CYB561 Verteb 91.9 0.098 2.1E-06 36.0 1.6 29 15-43 71-99 (143)
9 smart00665 B561 Cytochrome b-5 90.8 1.8 3.9E-05 28.2 6.8 31 15-45 30-60 (129)
10 TIGR00383 corA magnesium Mg(2+ 90.4 1.4 3E-05 32.6 6.6 41 27-67 266-307 (318)
11 cd08764 Cyt_b561_CG1275_like N 90.0 0.54 1.2E-05 34.4 4.0 39 5-43 119-157 (214)
12 PF13630 SdpI: SdpI/YhfL prote 89.6 1.1 2.4E-05 26.4 4.6 36 13-48 18-53 (76)
13 PRK09546 zntB zinc transporter 88.7 2 4.3E-05 32.3 6.3 41 27-67 272-313 (324)
14 PF10067 DUF2306: Predicted me 88.6 2.8 6E-05 26.8 6.2 32 15-46 2-33 (103)
15 PF12271 Chs3p: Chitin synthas 88.4 2.8 6.1E-05 32.2 7.1 62 10-71 109-173 (293)
16 COG0598 CorA Mg2+ and Co2+ tra 88.1 1.5 3.2E-05 33.1 5.4 43 25-67 268-311 (322)
17 PF13172 PepSY_TM_1: PepSY-ass 87.9 1.3 2.8E-05 23.1 3.6 30 15-44 2-31 (34)
18 PLN02680 carbon-monoxide oxyge 87.2 0.42 9.1E-06 35.5 1.9 38 5-42 139-176 (232)
19 COG2717 Predicted membrane pro 87.1 4.7 0.0001 29.6 7.3 60 16-82 144-203 (209)
20 cd08760 Cyt_b561_FRRS1_like Eu 86.9 3 6.5E-05 28.9 6.0 31 15-45 98-128 (191)
21 cd08765 Cyt_b561_CYBRD1 Verteb 86.1 0.47 1E-05 33.1 1.6 29 16-44 79-107 (153)
22 PF13703 PepSY_TM_2: PepSY-ass 85.3 2.1 4.5E-05 26.4 4.2 39 4-43 47-85 (88)
23 PLN02631 ferric-chelate reduct 84.7 2.5 5.4E-05 35.8 5.5 22 17-38 187-208 (699)
24 cd08554 Cyt_b561 Eukaryotic cy 84.0 9.3 0.0002 24.8 7.3 39 5-44 23-61 (131)
25 COG5658 Predicted integral mem 83.3 9.5 0.00021 27.9 7.4 69 13-81 40-108 (204)
26 PF03188 Cytochrom_B561: Eukar 81.7 8.8 0.00019 24.8 6.2 29 13-41 29-57 (137)
27 PF13706 PepSY_TM_3: PepSY-ass 81.6 3.4 7.3E-05 22.0 3.5 27 15-41 1-27 (37)
28 PF11044 TMEMspv1-c74-12: Plec 80.4 5.2 0.00011 22.9 4.1 35 49-83 3-38 (49)
29 PF04971 Lysis_S: Lysis protei 76.3 9.8 0.00021 23.4 4.7 52 31-84 14-65 (68)
30 PF15330 SIT: SHP2-interacting 75.6 5.8 0.00013 26.0 3.9 29 54-82 3-31 (107)
31 PRK11085 magnesium/nickel/coba 75.0 14 0.00031 28.3 6.4 40 27-66 264-304 (316)
32 PLN02292 ferric-chelate reduct 74.5 13 0.00028 31.6 6.5 20 17-36 204-223 (702)
33 cd08762 Cyt_b561_CYBASC3 Verte 74.3 3.8 8.3E-05 29.3 3.0 18 20-37 106-123 (179)
34 PLN02844 oxidoreductase/ferric 73.9 16 0.00034 31.2 6.9 22 17-38 190-211 (722)
35 PF01102 Glycophorin_A: Glycop 71.4 12 0.00027 25.1 4.8 12 52-63 69-80 (122)
36 PF12273 RCR: Chitin synthesis 71.2 5.5 0.00012 26.3 3.0 11 70-80 18-28 (130)
37 PLN02351 cytochromes b561 fami 70.8 5.3 0.00011 29.9 3.1 39 5-43 142-180 (242)
38 COG1294 AppB Cytochrome bd-typ 69.7 26 0.00055 27.5 6.8 78 4-81 106-194 (346)
39 PF08507 COPI_assoc: COPI asso 69.7 9.7 0.00021 25.3 4.0 53 14-72 57-109 (136)
40 PF01794 Ferric_reduct: Ferric 66.4 28 0.00061 21.5 6.3 21 18-38 33-53 (125)
41 PF02439 Adeno_E3_CR2: Adenovi 64.9 21 0.00045 19.6 3.9 31 55-85 7-37 (38)
42 cd08764 Cyt_b561_CG1275_like N 64.8 19 0.0004 26.4 4.9 35 5-40 45-79 (214)
43 PF15048 OSTbeta: Organic solu 64.0 15 0.00033 25.0 4.0 37 45-81 30-66 (125)
44 PF03729 DUF308: Short repeat 63.4 14 0.0003 20.8 3.4 21 22-42 25-45 (72)
45 PLN02810 carbon-monoxide oxyge 58.8 12 0.00026 27.9 3.0 39 5-43 139-177 (231)
46 PF13677 MotB_plug: Membrane M 57.9 23 0.00049 20.5 3.6 31 48-78 15-45 (58)
47 PF02628 COX15-CtaA: Cytochrom 57.9 69 0.0015 23.7 7.0 34 11-44 60-93 (302)
48 PRK15003 cytochrome d ubiquino 56.8 46 0.00099 26.4 6.1 76 3-78 103-192 (379)
49 PRK15028 cytochrome bd-II oxid 55.9 60 0.0013 25.7 6.7 77 3-79 103-193 (378)
50 smart00831 Cation_ATPase_N Cat 55.0 21 0.00045 20.1 3.1 31 10-40 33-63 (64)
51 PF14358 DUF4405: Domain of un 54.7 25 0.00055 20.2 3.5 28 11-38 34-61 (64)
52 PF01544 CorA: CorA-like Mg2+ 53.7 17 0.00037 25.8 3.1 42 25-66 240-284 (292)
53 PF04277 OAD_gamma: Oxaloaceta 53.1 44 0.00096 19.8 4.5 24 53-76 11-34 (79)
54 PF02322 Cyto_ox_2: Cytochrome 52.1 47 0.001 25.4 5.4 74 4-77 99-182 (328)
55 PF05568 ASFV_J13L: African sw 51.3 26 0.00055 25.0 3.6 29 53-81 31-59 (189)
56 PF10233 Cg6151-P: Uncharacter 51.3 60 0.0013 21.6 5.2 44 26-76 6-49 (113)
57 PF03929 PepSY_TM: PepSY-assoc 50.9 32 0.0007 17.2 3.3 24 18-41 1-24 (27)
58 TIGR00203 cydB cytochrome d ox 50.3 91 0.002 24.6 6.9 77 3-79 103-193 (378)
59 PF12769 DUF3814: Domain of un 47.7 15 0.00032 23.5 1.8 25 20-44 54-78 (87)
60 PF06011 TRP: Transient recept 47.2 99 0.0022 24.2 6.7 33 4-44 342-374 (438)
61 PF14007 YtpI: YtpI-like prote 46.6 31 0.00067 22.0 3.1 21 23-43 60-80 (89)
62 PF15099 PIRT: Phosphoinositid 46.6 23 0.00051 24.2 2.7 68 15-84 43-113 (129)
63 KOG4243 Macrophage maturation- 46.6 1.2E+02 0.0026 23.2 6.7 61 16-81 86-150 (298)
64 cd08761 Cyt_b561_CYB561D2_like 46.2 96 0.0021 21.3 8.3 37 6-42 43-81 (183)
65 cd08763 Cyt_b561_CYB561 Verteb 45.8 95 0.0021 21.2 6.0 31 13-43 35-65 (143)
66 COG3182 PiuB Uncharacterized i 43.2 28 0.0006 28.1 3.1 33 11-43 2-34 (442)
67 KOG2533 Permease of the major 42.7 72 0.0016 25.8 5.4 18 32-49 413-430 (495)
68 PF02656 DUF202: Domain of unk 42.5 69 0.0015 18.6 6.7 27 15-41 8-34 (73)
69 PF13789 DUF4181: Domain of un 41.6 94 0.002 19.9 7.1 32 16-47 25-56 (110)
70 PF04483 DUF565: Protein of un 39.7 48 0.001 19.4 3.0 24 57-82 8-31 (60)
71 PRK11017 codB cytosine permeas 39.6 1E+02 0.0022 23.8 5.7 52 6-60 1-52 (404)
72 TIGR01620 hyp_HI0043 conserved 39.4 1.8E+02 0.0038 22.4 7.2 67 15-81 11-78 (289)
73 TIGR00800 ncs1 NCS1 nucleoside 37.9 1.7E+02 0.0037 22.8 6.7 52 6-60 4-57 (442)
74 PF11712 Vma12: Endoplasmic re 37.6 1.1E+02 0.0023 20.4 4.9 60 15-77 69-135 (142)
75 cd08766 Cyt_b561_ACYB-1_like P 37.4 1.3E+02 0.0029 20.4 7.6 35 5-41 29-63 (144)
76 PF05915 DUF872: Eukaryotic pr 37.4 1.2E+02 0.0026 20.0 5.7 57 22-80 43-105 (115)
77 TIGR02205 septum_zipA cell div 36.7 21 0.00046 27.2 1.4 25 55-81 6-30 (284)
78 PRK05419 putative sulfite oxid 36.5 1.6E+02 0.0035 21.1 7.5 43 17-63 145-187 (205)
79 COG4298 Uncharacterized protei 36.1 49 0.0011 21.4 2.8 29 7-35 8-36 (95)
80 cd08762 Cyt_b561_CYBASC3 Verte 35.4 1.7E+02 0.0036 21.0 6.9 37 8-44 60-96 (179)
81 TIGR01478 STEVOR variant surfa 35.1 64 0.0014 25.0 3.8 28 53-80 260-288 (295)
82 PTZ00370 STEVOR; Provisional 35.0 64 0.0014 25.0 3.8 29 53-81 256-285 (296)
83 PF09911 DUF2140: Uncharacteri 34.8 39 0.00085 23.9 2.5 20 48-67 1-20 (187)
84 PF01027 Bax1-I: Inhibitor of 34.6 1.5E+02 0.0032 20.1 5.9 39 27-71 132-170 (205)
85 PF10951 DUF2776: Protein of u 33.6 57 0.0012 25.6 3.3 64 9-79 216-286 (347)
86 PF14800 DUF4481: Domain of un 32.5 2.4E+02 0.0053 22.0 7.1 61 16-76 58-120 (308)
87 PF10998 DUF2838: Protein of u 31.4 1E+02 0.0022 20.2 3.9 43 31-80 6-49 (111)
88 PF14147 Spore_YhaL: Sporulati 31.3 1E+02 0.0022 17.9 3.4 16 52-67 4-19 (52)
89 PF15169 DUF4564: Domain of un 30.9 75 0.0016 23.0 3.4 43 30-76 26-69 (187)
90 PLN02351 cytochromes b561 fami 30.9 2.3E+02 0.005 21.3 6.6 35 6-42 73-107 (242)
91 PF10953 DUF2754: Protein of u 30.5 45 0.00097 20.2 1.8 38 10-52 3-40 (70)
92 PF10947 DUF2628: Protein of u 30.2 1.4E+02 0.0031 18.6 7.2 17 63-79 91-107 (108)
93 PRK11380 hypothetical protein; 29.6 2.7E+02 0.0058 22.1 6.5 12 28-39 46-57 (353)
94 PRK05415 hypothetical protein; 29.3 2.8E+02 0.0061 21.8 6.9 59 23-81 68-130 (341)
95 COG4736 CcoQ Cbb3-type cytochr 29.1 87 0.0019 18.6 2.9 14 70-83 24-37 (60)
96 COG5202 Predicted membrane pro 28.9 3.2E+02 0.007 22.4 6.9 60 4-65 396-458 (512)
97 PRK07734 motB flagellar motor 28.7 95 0.0021 22.8 3.7 25 47-71 16-40 (259)
98 KOG0039 Ferric reductase, NADH 28.7 58 0.0013 27.3 2.8 26 17-42 229-254 (646)
99 PF06679 DUF1180: Protein of u 28.6 94 0.002 21.9 3.5 25 53-78 97-121 (163)
100 COG0109 CyoE Polyprenyltransfe 28.2 81 0.0018 24.4 3.4 27 58-84 124-150 (304)
101 PF06697 DUF1191: Protein of u 28.1 21 0.00045 27.3 0.1 33 49-81 212-244 (278)
102 PF10746 Phage_holin_6: Phage 27.8 97 0.0021 18.9 3.0 34 32-76 22-55 (66)
103 PLN02680 carbon-monoxide oxyge 27.7 2.6E+02 0.0056 20.8 7.6 24 20-43 115-138 (232)
104 KOG1608 Protein transporter of 27.6 3.1E+02 0.0068 21.7 7.2 38 9-46 244-281 (374)
105 PRK10209 acid-resistance membr 25.8 2.4E+02 0.0051 19.7 6.2 18 28-45 114-131 (190)
106 PF06609 TRI12: Fungal trichot 25.5 2.4E+02 0.0053 23.6 5.9 32 23-54 240-272 (599)
107 cd08765 Cyt_b561_CYBRD1 Verteb 25.1 2.4E+02 0.0052 19.5 5.6 37 5-41 33-70 (153)
108 PRK09041 motB flagellar motor 24.6 89 0.0019 24.0 3.0 27 46-72 22-48 (317)
109 PRK03427 cell division protein 24.4 80 0.0017 24.8 2.8 24 55-80 9-32 (333)
110 PRK12799 motB flagellar motor 24.0 1.1E+02 0.0025 24.6 3.6 23 47-69 24-46 (421)
111 KOG4293 Predicted membrane pro 23.7 9.3 0.0002 30.1 -2.5 44 2-47 233-276 (403)
112 PF04156 IncA: IncA protein; 23.3 2.5E+02 0.0054 19.1 6.4 23 20-42 2-24 (191)
113 PRK04125 murein hydrolase regu 23.2 2.3E+02 0.0049 19.5 4.5 35 49-83 91-125 (141)
114 PF13301 DUF4079: Protein of u 23.0 2.8E+02 0.006 19.5 6.9 42 17-58 112-156 (175)
115 PF05545 FixQ: Cbb3-type cytoc 22.8 1.2E+02 0.0025 16.6 2.6 25 53-79 10-34 (49)
116 PF09577 Spore_YpjB: Sporulati 22.4 1.4E+02 0.0031 22.1 3.6 30 49-83 200-229 (232)
117 PF10348 DUF2427: Domain of un 22.0 1.2E+02 0.0027 19.4 2.9 27 16-42 75-101 (105)
118 PF15176 LRR19-TM: Leucine-ric 22.0 2.5E+02 0.0053 18.5 4.5 30 47-76 14-46 (102)
119 COG1612 CtaA Uncharacterized p 21.9 3.8E+02 0.0082 20.7 6.0 27 13-39 72-98 (323)
120 PF14387 DUF4418: Domain of un 21.3 2.6E+02 0.0057 18.6 4.8 42 20-61 32-74 (124)
121 COG3447 Predicted integral mem 21.3 98 0.0021 24.1 2.7 24 15-38 156-179 (308)
122 PF14163 SieB: Superinfection 21.2 1.8E+02 0.004 19.3 3.8 21 54-74 35-55 (151)
123 COG2155 Uncharacterized conser 21.2 1.5E+02 0.0032 18.7 3.0 32 26-57 10-50 (79)
124 PF08374 Protocadherin: Protoc 21.0 44 0.00095 24.9 0.7 26 51-76 38-63 (221)
125 COG3768 Predicted membrane pro 20.9 3.9E+02 0.0085 21.2 5.9 66 13-78 56-125 (350)
126 KOG0204 Calcium transporting A 20.9 15 0.00033 32.6 -2.0 72 8-80 138-211 (1034)
127 PF05393 Hum_adeno_E3A: Human 20.9 1.5E+02 0.0032 19.3 3.0 15 69-83 47-61 (94)
128 PF14362 DUF4407: Domain of un 20.9 3.2E+02 0.0069 20.1 5.3 58 22-80 15-72 (301)
129 KOG1619 Cytochrome b [Energy p 20.5 2.1E+02 0.0045 21.6 4.2 39 5-43 148-186 (245)
130 PF11241 DUF3043: Protein of u 20.3 3.3E+02 0.0071 19.3 6.4 21 22-42 74-94 (170)
131 KOG2662 Magnesium transporters 20.2 4.4E+02 0.0096 21.4 6.2 19 28-46 358-376 (414)
132 PRK06925 flagellar motor prote 20.0 1.7E+02 0.0038 21.0 3.6 25 48-72 13-37 (230)
No 1
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-18 Score=134.95 Aligned_cols=82 Identities=46% Similarity=0.851 Sum_probs=76.9
Q ss_pred eeeeeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047801 2 FALFLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWK-SAYIIVISVLGGIAVLLEAITWIVVISRK 80 (86)
Q Consensus 2 ~a~~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~-~~y~~~~~~~~~~~i~Lev~~w~~~~~~k 80 (86)
+|.++||.|++|.|++||||||.+||..+++|++|+|.|+++.++...|+ ++|+.+.+....+.+++|..+|+...++.
T Consensus 300 ~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 379 (403)
T KOG4293|consen 300 LALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERP 379 (403)
T ss_pred HHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechhhhhhhhheeeeeeccc
Confidence 67899999999999999999999999999999999999999999999998 79999999999999999999998887776
Q ss_pred ccc
Q 047801 81 SRS 83 (86)
Q Consensus 81 ~~~ 83 (86)
+.+
T Consensus 380 ~~~ 382 (403)
T KOG4293|consen 380 SPS 382 (403)
T ss_pred Ccc
Confidence 643
No 2
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.42 E-value=5.4e-13 Score=93.57 Aligned_cols=68 Identities=40% Similarity=0.661 Sum_probs=63.4
Q ss_pred eeeeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCC--CchhHHHHHHHHHHHHHHHHHHH
Q 047801 3 ALFLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPE--NKWKSAYIIVISVLGGIAVLLEA 70 (86)
Q Consensus 3 a~~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~--~~w~~~y~~~~~~~~~~~i~Lev 70 (86)
..++||.+..|.|.+||++|+++|+++.++|++|+++|+++.+.. +.|.++|+++++++.++++++|.
T Consensus 122 ~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (191)
T cd08760 122 LGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI 191 (191)
T ss_pred HHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999999999999999999887 78999999999999999998873
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=98.44 E-value=1e-07 Score=63.20 Aligned_cols=38 Identities=47% Similarity=0.731 Sum_probs=33.9
Q ss_pred eeeccCCC---CCccchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 4 LFLRPKKD---HKYRFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 4 ~~~RP~k~---~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
.++||.++ ++.|..|+++|+++|+++.++|++|+++|+
T Consensus 89 G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 89 GFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34577776 889999999999999999999999999996
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=98.07 E-value=4.3e-06 Score=55.21 Aligned_cols=37 Identities=41% Similarity=0.689 Sum_probs=33.7
Q ss_pred eccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhh
Q 047801 6 LRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 6 ~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
+.|+++.+.|+.|+..|+++|+++.++|++|+++|++
T Consensus 95 ~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~ 131 (137)
T PF03188_consen 95 FMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLT 131 (137)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888899999999999999999999999999994
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=97.67 E-value=3.6e-05 Score=50.86 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=31.9
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
++.|++..+.|+.++++|++.|+++.+++++|+++|+
T Consensus 95 ~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 95 FLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457666667999999999999999999999999984
No 6
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.41 E-value=0.0002 Score=49.98 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=32.6
Q ss_pred eccCCCC--CccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 6 LRPKKDH--KYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 6 ~RP~k~~--k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
++|.+.. +.|+.++.+|.++|+++.++|++|+++|++-
T Consensus 118 ~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 118 YPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred hhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444443 6799999999999999999999999999977
No 7
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.97 E-value=0.16 Score=34.93 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=13.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 18 WNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 18 wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
..-.|.|+|-+++++-......|+
T Consensus 74 ~~SlHSwlGl~t~~L~~lQ~~~G~ 97 (144)
T cd08766 74 LYSLHSWLGIGTISLFGLQWLFGF 97 (144)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666665555555553
No 8
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.94 E-value=0.098 Score=35.96 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=19.5
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
..-+.-.|.|+|-+++++-......|+-.
T Consensus 71 ~~hf~SlHswlGl~t~~L~~lQ~~~G~~~ 99 (143)
T cd08763 71 YPDMYSLHSWCGILTFVLYFLQWLIGFSF 99 (143)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555668888877777777666666544
No 9
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=90.76 E-value=1.8 Score=28.24 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=26.1
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhhhccC
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGLDILN 45 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~ 45 (86)
++.|..+|..+.-+..+++++-+..++...+
T Consensus 30 ~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~ 60 (129)
T smart00665 30 KPTWFLLHVVLQILALVLGVIGLLAIFISHN 60 (129)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5889999999999999888888888877654
No 10
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=90.38 E-value=1.4 Score=32.62 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHH
Q 047801 27 YAILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 27 r~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i~ 67 (86)
-+...+.++.++.||...+ |...|+.+|.+++++++++.++
T Consensus 266 ~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 266 TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 3455677788899999874 5567999999999998887764
No 11
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=89.96 E-value=0.54 Score=34.40 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=30.7
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
++-|.-....|..--.+|...|+++.+++++.+.+|+.=
T Consensus 119 fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 119 FLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456765545565555689999999999999999999943
No 12
>PF13630 SdpI: SdpI/YhfL protein family
Probab=89.63 E-value=1.1 Score=26.42 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=29.7
Q ss_pred CccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCC
Q 047801 13 KYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPEN 48 (86)
Q Consensus 13 k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~ 48 (86)
|....|+..|+..|+..++.|++-+..|+-+.....
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~~~~ 53 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILFLNK 53 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999998888887655443
No 13
>PRK09546 zntB zinc transporter; Reviewed
Probab=88.66 E-value=2 Score=32.27 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHH
Q 047801 27 YAILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 27 r~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i~ 67 (86)
.+.+.+.++.++.||...+ |...|..+|.+++++++++.++
T Consensus 272 ~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~ 313 (324)
T PRK09546 272 MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG 313 (324)
T ss_pred HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH
Confidence 3445667888999999875 5567988998888888877663
No 14
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=88.61 E-value=2.8 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.078 Sum_probs=26.1
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhhhccCC
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGLDILNP 46 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~ 46 (86)
|+-+...|.+.||+-+....+....|+-+...
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~ 33 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFY 33 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44456789999999999999999999887643
No 15
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=88.45 E-value=2.8 Score=32.20 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCc---hhHHHHHHHHHHHHHHHHHHHH
Q 047801 10 KDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENK---WKSAYIIVISVLGGIAVLLEAI 71 (86)
Q Consensus 10 k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~---w~~~y~~~~~~~~~~~i~Lev~ 71 (86)
+.++.+.++.-.|..+--++...-.+|+|.|+++.+.+++ |-..-+..+...+..++.+...
T Consensus 109 ~~s~~~~~ftAi~~g~~~a~~w~Ll~Ng~vgfQl~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf 173 (293)
T PF12271_consen 109 PGSSVYPYFTAIQIGLISATCWCLLINGFVGFQLWEDGTPLSLWLLRGSSLILFIGTFYISLDTF 173 (293)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhheeeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677799999999999999999999999999999987754 5444445555555556554443
No 16
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=88.10 E-value=1.5 Score=33.14 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHH
Q 047801 25 VGYAILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 25 ~Gr~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i~ 67 (86)
++.+.+..-++.++.||.... |...|+.+|-++++.++++.++
T Consensus 268 ~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~ 311 (322)
T COG0598 268 VSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALL 311 (322)
T ss_pred HHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHH
Confidence 455666777888999999987 6678999999999999888874
No 17
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=87.90 E-value=1.3 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=25.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
|+.|...|.++|..+.+.-.+=...|+-+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999888888777777654
No 18
>PLN02680 carbon-monoxide oxygenase
Probab=87.15 E-value=0.42 Score=35.47 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=30.3
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhh
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
++-|......|+..--+|..+|+++.++++++..+|+.
T Consensus 139 f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~ 176 (232)
T PLN02680 139 FWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGIL 176 (232)
T ss_pred HHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46676555556555578999999999999999999984
No 19
>COG2717 Predicted membrane protein [Function unknown]
Probab=87.07 E-value=4.7 Score=29.56 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=38.5
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047801 16 FHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRKSR 82 (86)
Q Consensus 16 ~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~ 82 (86)
+.|+..|.+ +|.+.+||.+-...+- ..+..+.+.|.++.++..+.-. ...|...+++|+.
T Consensus 144 ~rW~~LHrL-vYl~~~L~~lH~~~s~---K~~~~~~vlY~ii~~~lll~R~---~k~~~~~~~~~~~ 203 (209)
T COG2717 144 KRWKKLHRL-VYLALILGALHYLWSV---KIDMPEPVLYAIIFAVLLLLRV---TKTRSKLRRRRST 203 (209)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHH---HHHHHHhhhcccc
Confidence 789999986 6999999988888822 3334566788777665554333 2234344444443
No 20
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=86.91 E-value=3 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.211 Sum_probs=17.3
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhhhccC
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGLDILN 45 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~ 45 (86)
++..+-.|.++|-++.++.++..+.|+-...
T Consensus 98 ~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~ 128 (191)
T cd08760 98 GGSLNNAHAILGIIVLALAILQPLLGLLRPH 128 (191)
T ss_pred CCCCcCcchhhhHHHHHHHHHHHHHHHhcCC
Confidence 3445555666666666666666666654443
No 21
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=86.06 E-value=0.47 Score=33.06 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=19.3
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 16 FHWNLYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 16 ~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
.-..-.|.|+|-+++++-...-..|+-..
T Consensus 79 ~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 79 PNMYSLHSWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555688888777777776666665443
No 22
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=85.31 E-value=2.1 Score=26.42 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=31.4
Q ss_pred eeeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 4 LFLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 4 ~~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
..+||....+.|+ |.-.|...|..+.++-.+=.+.|+.+
T Consensus 47 ~~~r~~~~~~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 47 FSLRPKRSKSKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred cccccCCCCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777788 88899999999998888887877654
No 23
>PLN02631 ferric-chelate reductase
Probab=84.74 E-value=2.5 Score=35.82 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=18.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHH
Q 047801 17 HWNLYHHGVGYAILVLGIINVF 38 (86)
Q Consensus 17 ~wn~~H~~~Gr~~iiLgiiNif 38 (86)
-.+.+|+|+||.+.+++++-..
T Consensus 187 ~~i~yHRWlGri~~~la~iH~i 208 (699)
T PLN02631 187 SSIKYHIWLGHVSNFLFLVHTV 208 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999987644
No 24
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=83.98 E-value=9.3 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=29.4
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
..||.+. ..|+.|...|..+.-...+++++-+..++...
T Consensus 23 ~~r~~~~-~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~ 61 (131)
T cd08554 23 VYRVFRL-LTKRALKLLHAILHLLAFVLGLVGLLAVFLFH 61 (131)
T ss_pred Hhccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455422 23688999999999999988888888887765
No 25
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=83.32 E-value=9.5 Score=27.90 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=50.5
Q ss_pred CccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 13 KYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 13 k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
+-+..|+..|...|-.+++.+..-...+......++-+-..|...+..+++..+.+.++.+....+++.
T Consensus 40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~~~~Il~li~~ls~~l~~~g~d~~~ 108 (204)
T COG5658 40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFAAVLILFLILLLSAILVALGYDIPG 108 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 345789999999999999999998888876666655566677777766666666666666665554443
No 26
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=81.75 E-value=8.8 Score=24.81 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=15.2
Q ss_pred CccchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 13 KYRFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 13 k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
+.|+.|...|..+--+..+++++-+...+
T Consensus 29 ~~~~~~~~~H~~lq~l~~~~~~~G~~~~~ 57 (137)
T PF03188_consen 29 KSRKWWFRIHWILQVLALVFAIIGFVAIF 57 (137)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677776655444444444444433
No 27
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=81.62 E-value=3.4 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.0
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
|+.+-..|.|+|-++-++-.+=.+.|.
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~ 27 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGA 27 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 577889999999888777766666664
No 28
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=80.35 E-value=5.2 Score=22.89 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=22.5
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047801 49 KWK-SAYIIVISVLGGIAVLLEAITWIVVISRKSRS 83 (86)
Q Consensus 49 ~w~-~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~ 83 (86)
.|- +.|++++..-.++++.|.+..=.+..+.|+.+
T Consensus 3 ~wlt~iFsvvIil~If~~iGl~IyQkikqIrgKkk~ 38 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIGLSIYQKIKQIRGKKKE 38 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 354 37888777777777877777655554444433
No 29
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=76.28 E-value=9.8 Score=23.36 Aligned_cols=52 Identities=10% Similarity=-0.087 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 047801 31 VLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRKSRSR 84 (86)
Q Consensus 31 iLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~~ 84 (86)
.-++.+.+.++-=.-+++.|. -+++++.+++..+-.-++.+++.++.|++..
T Consensus 14 ag~~~~wl~~lld~~sp~qW~--aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 14 AGSAGYWLLQLLDQFSPSQWA--AIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred hhhHHHHHHHHHhccCcccch--hHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 334455555543333445664 3344444443334344677777776666543
No 30
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=75.62 E-value=5.8 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047801 54 YIIVISVLGGIAVLLEAITWIVVISRKSR 82 (86)
Q Consensus 54 y~~~~~~~~~~~i~Lev~~w~~~~~~k~~ 82 (86)
.-++++++.++.++.-+..|++.+++++.
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34567777777788888999999888774
No 31
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=75.03 E-value=14 Score=28.26 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHH
Q 047801 27 YAILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAV 66 (86)
Q Consensus 27 r~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i 66 (86)
-+.+.+.++.++.||...+ |+..|..+|-.+++.++++.+
T Consensus 264 ~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~ 304 (316)
T PRK11085 264 VVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGL 304 (316)
T ss_pred HHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3455667778899999774 556788899888888888765
No 32
>PLN02292 ferric-chelate reductase
Probab=74.52 E-value=13 Score=31.64 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=17.8
Q ss_pred hhhhHhHHHHHHHHHHHHHH
Q 047801 17 HWNLYHHGVGYAILVLGIIN 36 (86)
Q Consensus 17 ~wn~~H~~~Gr~~iiLgiiN 36 (86)
-++.||+|+||.+.+++++-
T Consensus 204 ~f~~yHRWlGrii~ll~~lH 223 (702)
T PLN02292 204 SSIKYHIWLGHLVMTLFTSH 223 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999875
No 33
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=74.34 E-value=3.8 Score=29.32 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=9.9
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 047801 20 LYHHGVGYAILVLGIINV 37 (86)
Q Consensus 20 ~~H~~~Gr~~iiLgiiNi 37 (86)
-.|.|+|-+++++=...-
T Consensus 106 SlHSWlGl~t~~Lf~lQ~ 123 (179)
T cd08762 106 SLHSWVGICTVALFTCQW 123 (179)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356666666655544433
No 34
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=73.91 E-value=16 Score=31.21 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHH
Q 047801 17 HWNLYHHGVGYAILVLGIINVF 38 (86)
Q Consensus 17 ~wn~~H~~~Gr~~iiLgiiNif 38 (86)
-.+.+|.|+||.+++++++=..
T Consensus 190 ~~i~fHrWlGr~~~llallH~i 211 (722)
T PLN02844 190 ASVRYHVWLGTSMIFFATVHGA 211 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998775
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=71.43 E-value=12 Score=25.11 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 047801 52 SAYIIVISVLGG 63 (86)
Q Consensus 52 ~~y~~~~~~~~~ 63 (86)
|.+++++|++++
T Consensus 69 Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 69 IIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 345555554443
No 36
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=71.16 E-value=5.5 Score=26.29 Aligned_cols=11 Identities=9% Similarity=-0.140 Sum_probs=4.5
Q ss_pred HHHHHHHhhhc
Q 047801 70 AITWIVVISRK 80 (86)
Q Consensus 70 v~~w~~~~~~k 80 (86)
...|...+|+|
T Consensus 18 ~~~~~~rRR~r 28 (130)
T PF12273_consen 18 LFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 37
>PLN02351 cytochromes b561 family protein
Probab=70.75 E-value=5.3 Score=29.93 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=31.8
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
++-|......|.-.--+|..+|.++-++++++..+|+.=
T Consensus 142 F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~E 180 (242)
T PLN02351 142 FWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLE 180 (242)
T ss_pred HhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666555677777899999999999999999999853
No 38
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=69.70 E-value=26 Score=27.50 Aligned_cols=78 Identities=13% Similarity=0.313 Sum_probs=52.1
Q ss_pred eeeccCCCCC-ccchhhhHhHHHHH---HHHHHHHHHHHHhhhcc-CC---CCchhH---HHHHHHHHHHHHHHHHHHHH
Q 047801 4 LFLRPKKDHK-YRFHWNLYHHGVGY---AILVLGIINVFKGLDIL-NP---ENKWKS---AYIIVISVLGGIAVLLEAIT 72 (86)
Q Consensus 4 ~~~RP~k~~k-~R~~wn~~H~~~Gr---~~iiLgiiNif~Gl~l~-~~---~~~w~~---~y~~~~~~~~~~~i~Lev~~ 72 (86)
+-+|-+++++ .|+.|++.=..-|. .+.-++..|.++|+.+. +. +..|.. .|....++..+...+|.-.+
T Consensus 106 fefR~k~~~~~~k~~wd~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~~l~~pf~~l~gl~~~~~~~l~Ga~ 185 (346)
T COG1294 106 FEFRSKIEDPRWKKFWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPFALLCGLGLVLMYVLHGAA 185 (346)
T ss_pred hhhcccccChhhHhHHHHHHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3456555555 56999987665554 34445667999999987 22 224542 57777777777777778888
Q ss_pred HHHHhhhcc
Q 047801 73 WIVVISRKS 81 (86)
Q Consensus 73 w~~~~~~k~ 81 (86)
|...+.+..
T Consensus 186 ~l~~kT~g~ 194 (346)
T COG1294 186 WLLLKTEGA 194 (346)
T ss_pred HHHHHhccH
Confidence 888874433
No 39
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=69.68 E-value=9.7 Score=25.30 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=33.6
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047801 14 YRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAIT 72 (86)
Q Consensus 14 ~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~ 72 (86)
.++++..+..+.||.+..+ |.|.-..+. ......-++.+...+++++++....
T Consensus 57 i~~~~~FL~~~~GRGlfyi-----f~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYI-----FLGTLCLGQ-SILSIIIGLLLFLVGVIYIILGFFC 109 (136)
T ss_pred HHHhHhHHHhHHHHHHHHH-----HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999976543 333322222 2233466666677777777665554
No 40
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=66.42 E-value=28 Score=21.50 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHH
Q 047801 18 WNLYHHGVGYAILVLGIINVF 38 (86)
Q Consensus 18 wn~~H~~~Gr~~iiLgiiNif 38 (86)
.+.+|.++|+.+.+++++=..
T Consensus 33 ~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 33 LLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555999999999999988754
No 41
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.86 E-value=21 Score=19.58 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 047801 55 IIVISVLGGIAVLLEAITWIVVISRKSRSRK 85 (86)
Q Consensus 55 ~~~~~~~~~~~i~Lev~~w~~~~~~k~~~~~ 85 (86)
++++++.+++.++.-.+..+....||.+.+|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk~~~~k 37 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKKHRRQK 37 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 4555666666655555666666655554333
No 42
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=64.85 E-value=19 Score=26.37 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=24.4
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHh
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKG 40 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~G 40 (86)
..||.+.. .++.+...|..+.-.+.+++++-+.--
T Consensus 45 vyr~~~~~-~k~~~k~~H~~L~~lAl~~~ivGl~av 79 (214)
T cd08764 45 VYRVFRNT-RKKRLKLLHAVLHLLAFILAVIGLKAV 79 (214)
T ss_pred HhccCccc-cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666654 345578899999888888887765433
No 43
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=64.01 E-value=15 Score=24.99 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=26.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 45 NPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 45 ~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
..+++|..+..+..++.+++.++|-...-...|+||.
T Consensus 30 ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 30 EDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKM 66 (125)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccc
Confidence 4556899888887777777777766666665555554
No 44
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=63.44 E-value=14 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047801 22 HHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 22 H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
-..+|-..++-|+.++...++
T Consensus 25 ~~i~g~~~i~~Gi~~l~~~~~ 45 (72)
T PF03729_consen 25 AIILGIWLIISGIFQLISAFR 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666665
No 45
>PLN02810 carbon-monoxide oxygenase
Probab=58.80 E-value=12 Score=27.92 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=32.0
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
++-|......|...--+|..+|..+-++++++..+|+.=
T Consensus 139 Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~E 177 (231)
T PLN02810 139 FFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLE 177 (231)
T ss_pred HhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455776666777777999999999999999999999853
No 46
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=57.93 E-value=23 Score=20.52 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=23.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047801 48 NKWKSAYIIVISVLGGIAVLLEAITWIVVIS 78 (86)
Q Consensus 48 ~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~ 78 (86)
..|.++|+=++..+..++++|-..+-....+
T Consensus 15 ~~WlvtyaDlmTLLl~fFVlL~s~s~~d~~k 45 (58)
T PF13677_consen 15 PRWLVTYADLMTLLLAFFVLLFSMSSVDKEK 45 (58)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4799999999999999988876665544443
No 47
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=57.92 E-value=69 Score=23.68 Aligned_cols=34 Identities=9% Similarity=-0.135 Sum_probs=27.3
Q ss_pred CCCccchhhhHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 11 DHKYRFHWNLYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 11 ~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
+.+....++|.|+.+|+.+-++.++.........
T Consensus 60 ~~~~~~~~E~~HR~~~~~~gl~~l~~~~~~~~~~ 93 (302)
T PF02628_consen 60 FFKFHTWIEWGHRLLAGLVGLLILALAVWAWRKR 93 (302)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456799999999999999888888877777543
No 48
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=56.85 E-value=46 Score=26.42 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=47.6
Q ss_pred eeeeccCCCC-CccchhhhHhHHHHHHHH-H--HHHHHHHHhhhcc-CC-------C--CchhHHHHHHHHHHHHHHHHH
Q 047801 3 ALFLRPKKDH-KYRFHWNLYHHGVGYAIL-V--LGIINVFKGLDIL-NP-------E--NKWKSAYIIVISVLGGIAVLL 68 (86)
Q Consensus 3 a~~~RP~k~~-k~R~~wn~~H~~~Gr~~i-i--LgiiNif~Gl~l~-~~-------~--~~w~~~y~~~~~~~~~~~i~L 68 (86)
|+=+|-+.++ +.|+.|++....=+-..- . ..+.|+..|+.+. ++ + ..|-..|+.+.|+..++-.++
T Consensus 103 afEfR~k~~~~~wr~~Wd~~f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsll~Gl~~v~~~~~ 182 (379)
T PRK15003 103 GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIIT 182 (379)
T ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHHHHHHHHHHHHHH
Confidence 3446666444 568999998765554332 2 3456999999662 11 1 134457888888777766666
Q ss_pred HHHHHHHHhh
Q 047801 69 EAITWIVVIS 78 (86)
Q Consensus 69 ev~~w~~~~~ 78 (86)
.=..|...+.
T Consensus 183 ~GA~~L~~KT 192 (379)
T PRK15003 183 QGATYLQMRT 192 (379)
T ss_pred HHHHHHHHHc
Confidence 6666766554
No 49
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=55.93 E-value=60 Score=25.67 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=48.3
Q ss_pred eeeeccCCCC-CccchhhhHhHHHHHHHH-H--HHHHHHHHhhhcc-CCC------Cc---hhHHHHHHHHHHHHHHHHH
Q 047801 3 ALFLRPKKDH-KYRFHWNLYHHGVGYAIL-V--LGIINVFKGLDIL-NPE------NK---WKSAYIIVISVLGGIAVLL 68 (86)
Q Consensus 3 a~~~RP~k~~-k~R~~wn~~H~~~Gr~~i-i--LgiiNif~Gl~l~-~~~------~~---w~~~y~~~~~~~~~~~i~L 68 (86)
|+=+|-+.++ +.|+.|++.-..=+-+.- . ..+.|...|+.+. ++. .+ |-..|+...|+..++-.++
T Consensus 103 afEfR~k~~~~~wr~~Wd~~f~vgS~l~~f~~Gv~~g~~v~G~p~~~d~~~~~~~~G~~~~~l~Pf~ll~Gl~~v~l~~l 182 (378)
T PRK15028 103 AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 (378)
T ss_pred hheecccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCceecccccccccccccHHhhccHHHHHHHHHHHHHHHH
Confidence 4556756465 459999997765543332 2 3457999999884 221 11 2346888887777766666
Q ss_pred HHHHHHHHhhh
Q 047801 69 EAITWIVVISR 79 (86)
Q Consensus 69 ev~~w~~~~~~ 79 (86)
.=..|...+.+
T Consensus 183 ~Ga~~L~~KT~ 193 (378)
T PRK15028 183 QGGVWLQLKTV 193 (378)
T ss_pred HHHHHHHHHcc
Confidence 66667666543
No 50
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=55.02 E-value=21 Score=20.13 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=21.4
Q ss_pred CCCCccchhhhHhHHHHHHHHHHHHHHHHHh
Q 047801 10 KDHKYRFHWNLYHHGVGYAILVLGIINVFKG 40 (86)
Q Consensus 10 k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~G 40 (86)
+.+-.+.++..+.-.+-.++++.+++..++|
T Consensus 33 ~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 33 KRSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 3555566777676777777777787777665
No 51
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=54.69 E-value=25 Score=20.20 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCccchhhhHhHHHHHHHHHHHHHHHH
Q 047801 11 DHKYRFHWNLYHHGVGYAILVLGIINVF 38 (86)
Q Consensus 11 ~~k~R~~wn~~H~~~Gr~~iiLgiiNif 38 (86)
.+..|..|...|.+.|+...++.++=++
T Consensus 34 ~~~~~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 34 LGLNKHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999876553
No 52
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=53.67 E-value=17 Score=25.78 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhhccC-CCCchhHHHHHH--HHHHHHHHH
Q 047801 25 VGYAILVLGIINVFKGLDILN-PENKWKSAYIIV--ISVLGGIAV 66 (86)
Q Consensus 25 ~Gr~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~--~~~~~~~~i 66 (86)
+.-+.+-+..+.++.||+..+ |...|+..|..+ ++.++++.+
T Consensus 240 ~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~ 284 (292)
T PF01544_consen 240 VTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAI 284 (292)
T ss_dssp HHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHH
Confidence 344455567888999998884 445566544443 444444443
No 53
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=53.06 E-value=44 Score=19.79 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047801 53 AYIIVISVLGGIAVLLEAITWIVV 76 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~w~~~ 76 (86)
.++++..++.+.+++.....+...
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~~~ 34 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKLIR 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777633
No 54
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=52.07 E-value=47 Score=25.39 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=42.7
Q ss_pred eeeccCC-CCCccchhhhHhHHHHHHH-HHH--HHHHHHHhhhccCCC----C--chhHHHHHHHHHHHHHHHHHHHHHH
Q 047801 4 LFLRPKK-DHKYRFHWNLYHHGVGYAI-LVL--GIINVFKGLDILNPE----N--KWKSAYIIVISVLGGIAVLLEAITW 73 (86)
Q Consensus 4 ~~~RP~k-~~k~R~~wn~~H~~~Gr~~-iiL--giiNif~Gl~l~~~~----~--~w~~~y~~~~~~~~~~~i~Lev~~w 73 (86)
+-+|-+. +.+.|+.|++.--.-+-.. ..+ ...|+..|+.+...+ . .|-..|+.+.|+..+....+.-..|
T Consensus 99 fefR~~~~~~~~r~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~~~~~~~g~~~~~l~pf~ll~Gl~~v~~~~~~GA~~ 178 (328)
T PF02322_consen 99 FEFRHKADSPRWRRFWDWVFFIGSLLPPFLLGVALGNLVSGLPIDANGNYTGGFFDLLSPFSLLGGLAVVALFALHGAVF 178 (328)
T ss_pred HHHHhccCChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccccCchHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666 4568999998876555432 233 445999998877422 1 2333566666655555444444445
Q ss_pred HHHh
Q 047801 74 IVVI 77 (86)
Q Consensus 74 ~~~~ 77 (86)
...+
T Consensus 179 l~~k 182 (328)
T PF02322_consen 179 LALK 182 (328)
T ss_pred HHhh
Confidence 4443
No 55
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=51.35 E-value=26 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 53 AYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
.|++++++.+.+.++.-...|...+|||.
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 66666666666555544555777776665
No 56
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=51.25 E-value=60 Score=21.58 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047801 26 GYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVV 76 (86)
Q Consensus 26 Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~ 76 (86)
+-.++.+|+.|+|.- +..-++++++.-+.+.+-++.|+=-..+.
T Consensus 6 ~ilcialGi~nif~~-------~~~cii~gi~~i~~gfvv~~iE~P~l~~~ 49 (113)
T PF10233_consen 6 IILCIALGIANIFSF-------SPVCIIFGIIMIVSGFVVLFIEAPFLCRI 49 (113)
T ss_pred HHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 456788899998864 34446666666666666677787554443
No 57
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=50.90 E-value=32 Score=17.20 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=15.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 18 WNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 18 wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
||.+|.|++-...+.=++-...|+
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788877766665555555554
No 58
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=50.26 E-value=91 Score=24.64 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=45.8
Q ss_pred eeeeccCCCC-CccchhhhHhHHHHHHHH-H--HHHHHHHHhhhccCC---C-----C--chhHHHHHHHHHHHHHHHHH
Q 047801 3 ALFLRPKKDH-KYRFHWNLYHHGVGYAIL-V--LGIINVFKGLDILNP---E-----N--KWKSAYIIVISVLGGIAVLL 68 (86)
Q Consensus 3 a~~~RP~k~~-k~R~~wn~~H~~~Gr~~i-i--LgiiNif~Gl~l~~~---~-----~--~w~~~y~~~~~~~~~~~i~L 68 (86)
|+-+|-+.++ +.|+.|++....-+-..- . ..+.|+..|+.+... + . .|-..|+...|+..++...+
T Consensus 103 afefR~k~~~~~wr~~wd~~f~vgSll~p~~lGv~~g~~~~G~~~~~~~~~~~~~~g~~~~ll~Pfsll~Gl~~v~~~~~ 182 (378)
T TIGR00203 103 AFEYRGKIDHLRWRKVWDWGLFIGSLVPPLVFGVAFGNLLQGVPFDFDENLRVHYTGSFFQLLNPFSLLCGVTSLGMCIT 182 (378)
T ss_pred heeecccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeccccccccccccccHHhhcCHHHHHHHHHHHHHHHH
Confidence 4567777555 559999998766554332 2 345699999865321 1 1 24345666666666555554
Q ss_pred HHHHHHHHhhh
Q 047801 69 EAITWIVVISR 79 (86)
Q Consensus 69 ev~~w~~~~~~ 79 (86)
.-..|...+..
T Consensus 183 ~GA~~L~~kt~ 193 (378)
T TIGR00203 183 HGAMWLQLRTV 193 (378)
T ss_pred HHHHHHHHhhc
Confidence 45556555443
No 59
>PF12769 DUF3814: Domain of unknown function (DUF3814); InterPro: IPR024605 This entry represents the C-terminal domain of NAD(P) transhydrogenase, alpha subunit.
Probab=47.73 E-value=15 Score=23.52 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 20 LYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 20 ~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
..=..+|.++++++-+|++-||...
T Consensus 54 ~~~~~lg~~Av~~a~iNv~GGF~VT 78 (87)
T PF12769_consen 54 TLAQVLGFIAVFLATINVVGGFLVT 78 (87)
T ss_pred hHHHHHHHHHHHHHHHHHhhchHHH
Confidence 4456789999999999999998654
No 60
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=47.18 E-value=99 Score=24.20 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred eeeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 4 LFLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 4 ~~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
...||..+.. . |+.+..+.-+ =++|.++++-..
T Consensus 342 ~~~~Py~~~~--~--n~~~~~~~~~----~~i~~~l~i~f~ 374 (438)
T PF06011_consen 342 FILRPYMDKR--T--NVLNIILSVV----RLITLFLLIAFL 374 (438)
T ss_pred HHhChhcccc--c--cHHHHHHHHH----HHHHHHHHHHHh
Confidence 4578887753 2 6666655444 444555555444
No 61
>PF14007 YtpI: YtpI-like protein
Probab=46.64 E-value=31 Score=22.01 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 047801 23 HGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 23 ~~~Gr~~iiLgiiNif~Gl~l 43 (86)
..+|-+.+++|+.|++.|+.-
T Consensus 60 ~iV~~ifl~lG~~n~~~G~r~ 80 (89)
T PF14007_consen 60 LIVGAIFLVLGLFNLFAGIRA 80 (89)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 345666677777777777654
No 62
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=46.64 E-value=23 Score=24.22 Aligned_cols=68 Identities=22% Similarity=0.399 Sum_probs=34.5
Q ss_pred cchhhhHhHH--HHHHHHHHHHHHHHHhhhccCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 047801 15 RFHWNLYHHG--VGYAILVLGIINVFKGLDILNPENKWKS-AYIIVISVLGGIAVLLEAITWIVVISRKSRSR 84 (86)
Q Consensus 15 R~~wn~~H~~--~Gr~~iiLgiiNif~Gl~l~~~~~~w~~-~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~~ 84 (86)
+.=|++||-. +|-++.+.||+=.-.-... ++... .+ ..+.++-.++++-++.-..-|....|||++++
T Consensus 43 g~e~s~Yrci~pfG~vili~GvvvT~vays~-n~~~s-i~~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr 113 (129)
T PF15099_consen 43 GAEWSCYRCIMPFGVVILIAGVVVTAVAYSF-NSHGS-IISIFGPVLLSLGLMLLACSALCWKPIIRKKKKKR 113 (129)
T ss_pred CCCceEEEEEEEehHHHHHHhhHhheeeEee-cCCcc-hhhhehHHHHHHHHHHHHhhhheehhhhHhHHHHh
Confidence 4557788733 4666666666543332222 11111 12 44444445555555545556776666655443
No 63
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=46.62 E-value=1.2e+02 Score=23.23 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=46.0
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 16 FHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWK----SAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 16 ~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~----~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
..=|-+-|-++-.=.|+|.++.+. + +++.|. +.|++.++.+..+..+.....|....|+|-
T Consensus 86 hvAN~~tHai~I~PaIl~~~~l~~---~--s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~ 150 (298)
T KOG4243|consen 86 HVANCYTHAIWIVPAILGSALLHR---L--SDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKL 150 (298)
T ss_pred HHHhhHhhHhhhhHHHHHHHHHHH---h--hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777787778888888776 2 334453 589999999999999888888888776554
No 64
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=46.17 E-value=96 Score=21.30 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=24.8
Q ss_pred eccCCCC--CccchhhhHhHHHHHHHHHHHHHHHHHhhh
Q 047801 6 LRPKKDH--KYRFHWNLYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 6 ~RP~k~~--k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
+||...- +.|+.|...|+.+.-.+.+++++-....+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~ 81 (183)
T cd08761 43 LQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYY 81 (183)
T ss_pred hcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654221 457888899999888777777765555543
No 65
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=45.78 E-value=95 Score=21.15 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=22.5
Q ss_pred CccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 13 KYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 13 k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
..|+.....|+.++-++++++++-+..=++-
T Consensus 35 ~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~ 65 (143)
T cd08763 35 ETKRSTKILHGLLHIMALVISLVGLVAVFDY 65 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999988888887766554443
No 66
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=43.19 E-value=28 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=24.2
Q ss_pred CCCccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 11 DHKYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 11 ~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
.+.+|..|-|.|+|.|-++..+=++-.+.|.-+
T Consensus 2 ~s~~~~~wr~lHfyaGL~v~pfl~ll~lTG~~~ 34 (442)
T COG3182 2 KSRYRRVWRWLHFYAGLLVAPFLFLLALTGSLL 34 (442)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 457889999999999987766665555555533
No 67
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=42.71 E-value=72 Score=25.84 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhccCCCCc
Q 047801 32 LGIINVFKGLDILNPENK 49 (86)
Q Consensus 32 LgiiNif~Gl~l~~~~~~ 49 (86)
-|..|+..|.-......+
T Consensus 413 ~~s~~~~~~~~~~~~~ap 430 (495)
T KOG2533|consen 413 TGSAGAISGQLFRSLDAP 430 (495)
T ss_pred hhHHHHhhhhhcccccCc
Confidence 355566666555554444
No 68
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=42.48 E-value=69 Score=18.62 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=15.5
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
|.+=.|..-.+.-...-+++.+.+..-
T Consensus 8 RT~LaW~Rt~l~l~~~g~~l~~~~~~~ 34 (73)
T PF02656_consen 8 RTFLAWIRTALALVGVGLALLRFFSLD 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555566666666555556655555433
No 69
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=41.61 E-value=94 Score=19.91 Aligned_cols=32 Identities=28% Similarity=0.213 Sum_probs=25.5
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHhhhccCCC
Q 047801 16 FHWNLYHHGVGYAILVLGIINVFKGLDILNPE 47 (86)
Q Consensus 16 ~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~ 47 (86)
++.|-.|.+.-..+.+..++-++.+..+...+
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~ 56 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIFR 56 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 78899999999999999988886666554433
No 70
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=39.70 E-value=48 Score=19.44 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 047801 57 VISVLGGIAVLLEAITWIVVISRKSR 82 (86)
Q Consensus 57 ~~~~~~~~~i~Lev~~w~~~~~~k~~ 82 (86)
+++.+.++ +.|+..+...+++++.
T Consensus 8 i~a~~iv~--~~E~i~~l~Y~~~~~~ 31 (60)
T PF04483_consen 8 IAAAIIVL--FIEVISRLRYSKPKKK 31 (60)
T ss_pred HHHHHHHH--HHHHHHHHhhcccccc
Confidence 34444443 3499999887776543
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=39.59 E-value=1e+02 Score=23.83 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=29.4
Q ss_pred eccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHH
Q 047801 6 LRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISV 60 (86)
Q Consensus 6 ~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~ 60 (86)
++|-|+++++..|+.+=-|+|-....... ..|-.+...-+.|...-.+++|-
T Consensus 1 ~~pvp~~~r~~~~~~~~~~~g~~~~~~~~---~~g~~l~~GLs~~~ai~aiilG~ 52 (404)
T PRK11017 1 LSPVPQSARKGVLSLTMVMLGFTFFSASM---WAGGTLGTGLSFVDFLLAVLIGN 52 (404)
T ss_pred CCCCCHHHhcchHhHHHHHHHHHHHHHHH---HHHHHHhcCCCHHHHHHHHHHHH
Confidence 47989998888888777788844444333 33332322223344444444443
No 72
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=39.39 E-value=1.8e+02 Score=22.40 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=30.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKS-AYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~-~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
++.|.+.=..++-.......+.....+.=+-..++|-- ++.++++..++..+..-..-|...+|-|+
T Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~wLg~~~~~l~~~~~l~~~~~~~rE~~~l~RL~~ 78 (289)
T TIGR01620 11 FSFGKLGLGALGVLFGLAFVLQAVQWIRNLFQRSDWLGLTATIALIVIIFAGLALVGREWRRLMRLNA 78 (289)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35565553333333333333333332222223456653 56666665555555444445555544443
No 73
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=37.88 E-value=1.7e+02 Score=22.76 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=32.9
Q ss_pred eccCCCCCcc-chhhhHhHHHHHHHHHHHHHHHHHhhhccCCCC-chhHHHHHHHHH
Q 047801 6 LRPKKDHKYR-FHWNLYHHGVGYAILVLGIINVFKGLDILNPEN-KWKSAYIIVISV 60 (86)
Q Consensus 6 ~RP~k~~k~R-~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~-~w~~~y~~~~~~ 60 (86)
++|-|+++++ +.||..-.|+|-..-+....-+..+. ..+. .|...-..+++.
T Consensus 4 i~pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~---~~GLs~~~ailai~lG~ 57 (442)
T TIGR00800 4 LQPVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGL---PLGLSWWQSVIAIILGN 57 (442)
T ss_pred CCCCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH---hcCCcHHHHHHHHHHHH
Confidence 4788999987 88888888888776665555554443 3333 344444444443
No 74
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.65 E-value=1.1e+02 Score=20.41 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=27.5
Q ss_pred cchhhhHhHHHHHHH-HHHHHHHHHHhhh-ccC-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047801 15 RFHWNLYHHGVGYAI-LVLGIINVFKGLD-ILN-----PENKWKSAYIIVISVLGGIAVLLEAITWIVVI 77 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~-iiLgiiNif~Gl~-l~~-----~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~ 77 (86)
..-++-++.-++.++ ++++++-.|.... ..+ .+...+...+.+.|.+++ +.|+..+....
T Consensus 69 ~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vl---vAEv~l~~~y~ 135 (142)
T PF11712_consen 69 AQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVL---VAEVVLYIRYL 135 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 466666666665443 2333333333333 222 222334444444444443 23776665544
No 75
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.43 E-value=1.3e+02 Score=20.45 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
.+|+.+.+ |+.+...|+.+--.+.+++++-+..=+
T Consensus 29 ~~r~~~~~--k~~~k~iH~~l~~la~~~~vvGl~avf 63 (144)
T cd08766 29 AYKTVPGS--REVQKAVHLTLHLVALVLGIVGIYAAF 63 (144)
T ss_pred Hhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666644 466777888776666666555444433
No 76
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=37.42 E-value=1.2e+02 Score=19.98 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcc------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047801 22 HHGVGYAILVLGIINVFKGLDIL------NPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRK 80 (86)
Q Consensus 22 H~~~Gr~~iiLgiiNif~Gl~l~------~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k 80 (86)
=..++-++.++|.+=++.|+-+. +.++.|-..-.+++.++=.+|-+ ...|.-.+.+|
T Consensus 43 ~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~ 105 (115)
T PF05915_consen 43 SIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYK 105 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCC
Confidence 34566667777777666665443 23345766777777777777754 44555555443
No 77
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=36.66 E-value=21 Score=27.16 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 55 IIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 55 ~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
.+++|.+++++++ ++-|+..+|.|+
T Consensus 6 LIIvGaiaI~aLl--~hGlwt~Rke~s 30 (284)
T TIGR02205 6 LIIVGILAIAALL--FHGLWTSRKEKS 30 (284)
T ss_pred HHHHHHHHHHHHH--Hccccccccccc
Confidence 4566677776654 778777766554
No 78
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=36.49 E-value=1.6e+02 Score=21.09 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=27.8
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHH
Q 047801 17 HWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGG 63 (86)
Q Consensus 17 ~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~ 63 (86)
-|...|.. .|.+.+|+++-.+... +++..-...|+++++.+..
T Consensus 145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~---k~~~~~~~~y~~~~~~ll~ 187 (205)
T PRK05419 145 RWQKLHRL-VYLIAILAPLHYLWSV---KSDSPEPLIYAAIVAVLLA 187 (205)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHh---ccccccHHHHHHHHHHHHH
Confidence 68899987 6777779988866543 2222223577777665544
No 79
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.12 E-value=49 Score=21.39 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=20.6
Q ss_pred ccCCCCCccchhhhHhHHHHHHHHHHHHH
Q 047801 7 RPKKDHKYRFHWNLYHHGVGYAILVLGII 35 (86)
Q Consensus 7 RP~k~~k~R~~wn~~H~~~Gr~~iiLgii 35 (86)
-|++|++-=-.+||.-...-+.+..+|+.
T Consensus 8 ~p~~dspawi~f~waafg~s~~m~~~gi~ 36 (95)
T COG4298 8 GPQNDSPAWIMFNWAAFGASYFMLGLGIW 36 (95)
T ss_pred CCCCCCchhHhHHHHHHHHHHHHHHHHhh
Confidence 58889987777888766666666665544
No 80
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.40 E-value=1.7e+02 Score=20.96 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=24.5
Q ss_pred cCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhcc
Q 047801 8 PKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDIL 44 (86)
Q Consensus 8 P~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~ 44 (86)
|...+..+..+...|..+--.+++++++-+.-=++--
T Consensus 60 ~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~h 96 (179)
T cd08762 60 PLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFH 96 (179)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433334566789999988888888777666555443
No 81
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.08 E-value=64 Score=24.96 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhhc
Q 047801 53 AYIIVISVLGGIAVLLEAIT-WIVVISRK 80 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~-w~~~~~~k 80 (86)
.|++-+-++.+..++|-+.= |...||++
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45655555555555544433 55544444
No 82
>PTZ00370 STEVOR; Provisional
Probab=34.98 E-value=64 Score=24.97 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhhcc
Q 047801 53 AYIIVISVLGGIAVLLEAIT-WIVVISRKS 81 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~-w~~~~~~k~ 81 (86)
.|++-+-++.+..++|-+.= |...||+++
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 45655555555555544433 555544443
No 83
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=34.79 E-value=39 Score=23.91 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 047801 48 NKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 48 ~~w~~~y~~~~~~~~~~~i~ 67 (86)
+.||++|.+.+++.+++.++
T Consensus 1 N~WK~aF~~Lla~~l~~~~~ 20 (187)
T PF09911_consen 1 NWWKWAFLILLALNLAFVIV 20 (187)
T ss_pred ChHHHHHHHHHHHHHHHHhh
Confidence 46999999998887776654
No 84
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=34.59 E-value=1.5e+02 Score=20.13 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 047801 27 YAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAI 71 (86)
Q Consensus 27 r~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~ 71 (86)
-.+++.+++|+|.+ .+.+...++.+...+...+++-|..
T Consensus 132 ~~l~i~~l~~~f~~------~~~~~~~is~~~~~lf~~~l~~Dt~ 170 (205)
T PF01027_consen 132 IGLIIFGLVSIFLP------SSPLYLLISYIGILLFSLYLVYDTQ 170 (205)
T ss_pred HHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888875 3345555554444555566665665
No 85
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=33.65 E-value=57 Score=25.62 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=34.1
Q ss_pred CCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhcc--CCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047801 9 KKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDIL--NPE-----NKWKSAYIIVISVLGGIAVLLEAITWIVVISR 79 (86)
Q Consensus 9 ~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~--~~~-----~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~ 79 (86)
.-++|-|+.|.+.= +++|-+|+-.|+-+. +.+ ..+.....+.++.-..--++|-...|+...+-
T Consensus 216 ~ys~~Er~~W~~lV-------l~mGsi~~l~Gl~vl~~~~~~~~~~~G~ilIGLGlvCySIsSKViLLA~vWr~~f~L 286 (347)
T PF10951_consen 216 TYSEKERWKWPKLV-------LVMGSISILWGLYVLLASSGPANNAPGYILIGLGLVCYSISSKVILLAKVWRREFKL 286 (347)
T ss_pred cccHHHhhhhHHHH-------HHHhhHHHHhhhheEEecCCcccCCcceeeeehhhHHHHHHHHHHHHHHHHHhhcch
Confidence 33556678887654 455555555555554 222 12333334444444555566667778776543
No 86
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=32.51 E-value=2.4e+02 Score=21.99 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=35.6
Q ss_pred chhhh--HhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047801 16 FHWNL--YHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVV 76 (86)
Q Consensus 16 ~~wn~--~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~ 76 (86)
.+||. .|..+--++-+.-..|+|-|+++...+.-|-....+-++.+.+...+.-+..|...
T Consensus 58 ~~yNs~~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~~Llv~l~ai~lt~~l~lv~~~~~r 120 (308)
T PF14800_consen 58 TLYNSRYFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVGWLLVNLAAIFLTMALILVFMRHQR 120 (308)
T ss_pred eeecchHHHHHHHHHHHHHHHHHHHccchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44543 35555555556667899999999988888875444444444433333334444433
No 87
>PF10998 DUF2838: Protein of unknown function (DUF2838); InterPro: IPR021261 This bacterial family of proteins has no known function.
Probab=31.44 E-value=1e+02 Score=20.23 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhccCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047801 31 VLGIINVFKGLDILNPENKWKS-AYIIVISVLGGIAVLLEAITWIVVISRK 80 (86)
Q Consensus 31 iLgiiNif~Gl~l~~~~~~w~~-~y~~~~~~~~~~~i~Lev~~w~~~~~~k 80 (86)
++|+.|++.+-.+.+....|-. .|++.. +.+-..+|...+|++
T Consensus 6 ~~gV~~~~~~~~l~g~~P~~~~~~y~~~~-------~~l~p~R~~~Y~k~~ 49 (111)
T PF10998_consen 6 VFGVLNILLTGFLLGARPEHFPYWYTVQL-------IVLMPLRFYTYRKKK 49 (111)
T ss_pred eHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 5789999998888887766653 666655 333456676666654
No 88
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=31.34 E-value=1e+02 Score=17.94 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 047801 52 SAYIIVISVLGGIAVL 67 (86)
Q Consensus 52 ~~y~~~~~~~~~~~i~ 67 (86)
++|.+++|.+.-.|.+
T Consensus 4 WvY~vi~gI~~S~ym~ 19 (52)
T PF14147_consen 4 WVYFVIAGIIFSGYMA 19 (52)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6899999888888875
No 89
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=30.95 E-value=75 Score=23.03 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhccCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047801 30 LVLGIINVFKGLDILNPEN-KWKSAYIIVISVLGGIAVLLEAITWIVV 76 (86)
Q Consensus 30 iiLgiiNif~Gl~l~~~~~-~w~~~y~~~~~~~~~~~i~Lev~~w~~~ 76 (86)
+.+|+.-|+++.-..++++ .||..|...+.++++. -+..|...
T Consensus 26 l~~gi~siGl~~~yys~d~~~wK~fyv~~c~fva~~----n~edwee~ 69 (187)
T PF15169_consen 26 LLVGIASIGLAAAYYSSDSLLWKLFYVAGCLFVALQ----NMEDWEEA 69 (187)
T ss_pred hHHHHHhcccceeeecCCchHHHHHHHHHHHHHHHh----cchhhhhe
Confidence 4567777777776776665 5887776665554442 34556554
No 90
>PLN02351 cytochromes b561 family protein
Probab=30.89 E-value=2.3e+02 Score=21.25 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=24.7
Q ss_pred eccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhh
Q 047801 6 LRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 6 ~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
.|.-+.+ |+.+...|..+--.+++++++-+.--++
T Consensus 73 YR~~~~~--~k~~K~lH~~Lh~~Ali~~vvGl~a~fh 107 (242)
T PLN02351 73 HRWLPGS--RKTKKSVHLWLQGLALASGVFGIWTKFH 107 (242)
T ss_pred hhccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555543 5568999999988888888776666444
No 91
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=30.46 E-value=45 Score=20.22 Aligned_cols=38 Identities=21% Similarity=0.600 Sum_probs=23.7
Q ss_pred CCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhH
Q 047801 10 KDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKS 52 (86)
Q Consensus 10 k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~ 52 (86)
...|.|.-|.+|-.-+|-+.+.=|++ +.+|| ....|..
T Consensus 3 l~~kirrdwhyyafa~glifilngvv-gllgf----eakgwqt 40 (70)
T PF10953_consen 3 LPVKIRRDWHYYAFAIGLIFILNGVV-GLLGF----EAKGWQT 40 (70)
T ss_pred cchHhhhhhHHHHHHHHHHHHhhchh-hhcee----cccCcee
Confidence 35678889998888888766555543 23444 3345643
No 92
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=30.25 E-value=1.4e+02 Score=18.62 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 047801 63 GIAVLLEAITWIVVISR 79 (86)
Q Consensus 63 ~~~i~Lev~~w~~~~~~ 79 (86)
-+...++...|+..+-+
T Consensus 91 ~~~~g~~~n~~y~~~~~ 107 (108)
T PF10947_consen 91 SLFFGMFANYWYYRHLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34445567777665543
No 93
>PRK11380 hypothetical protein; Provisional
Probab=29.61 E-value=2.7e+02 Score=22.14 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 047801 28 AILVLGIINVFK 39 (86)
Q Consensus 28 ~~iiLgiiNif~ 39 (86)
..+++|++-+|-
T Consensus 46 ~~~~~~~~~v~~ 57 (353)
T PRK11380 46 LTCVVAVMFVFA 57 (353)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 94
>PRK05415 hypothetical protein; Provisional
Probab=29.28 E-value=2.8e+02 Score=21.75 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC---CCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 23 HGVGYAILVLGIINVFKGLDILN---PENKWKS-AYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 23 ~~~Gr~~iiLgiiNif~Gl~l~~---~~~~w~~-~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
.++.-++..++..-+..+.+... ..+.|-- ++.++.+.+++..+..-..-|...+|-|+
T Consensus 68 ~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~wlg~~~~~~~~~~~~~~~~~~~rE~~~l~rL~~ 130 (341)
T PRK05415 68 KLLWGGLGLLGSLVVGQAVQWLRDAFQRSDWLGLGAAVVGALIVLAGLGIVVREWRRLRRLRQ 130 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444444433332 2345653 66666666666555544555655554443
No 95
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=87 Score=18.61 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=7.8
Q ss_pred HHHHHHHhhhcccc
Q 047801 70 AITWIVVISRKSRS 83 (86)
Q Consensus 70 v~~w~~~~~~k~~~ 83 (86)
...|...+++||.+
T Consensus 24 avi~~ayr~~~K~~ 37 (60)
T COG4736 24 AVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHhcccchhh
Confidence 44566666665543
No 96
>COG5202 Predicted membrane protein [Function unknown]
Probab=28.94 E-value=3.2e+02 Score=22.37 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=37.7
Q ss_pred eeeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCC---CchhHHHHHHHHHHHHHH
Q 047801 4 LFLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPE---NKWKSAYIIVISVLGGIA 65 (86)
Q Consensus 4 ~~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~---~~w~~~y~~~~~~~~~~~ 65 (86)
+|+||+-..+. -..-.-..+|+.++-|...-.-.-|-+++.. -.|+-+|-.+-..++...
T Consensus 396 fFlr~d~~tp~--p~k~~ydv~g~~a~~l~~~Y~~~sF~lL~lk~s~~VW~svYF~vHI~~afsl 458 (512)
T COG5202 396 FFLREDGVTPL--PSKSLYDVLGRIAMLLLTTYFSASFFLLSLKDSMYVWRSVYFAVHIFLAFSL 458 (512)
T ss_pred ccccccCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 56777766653 2334456789988888765555555555544 369988877765554443
No 97
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=28.74 E-value=95 Score=22.75 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 047801 47 ENKWKSAYIIVISVLGGIAVLLEAI 71 (86)
Q Consensus 47 ~~~w~~~y~~~~~~~~~~~i~Lev~ 71 (86)
+..|+++|.=++..+..++++|=.+
T Consensus 16 ~~~W~vtYAD~vTlLlaFFvlL~s~ 40 (259)
T PRK07734 16 DESWLIPYADLLTLLLALFIVLFAM 40 (259)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3579999999998888888765433
No 98
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.70 E-value=58 Score=27.30 Aligned_cols=26 Identities=8% Similarity=-0.090 Sum_probs=21.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhh
Q 047801 17 HWNLYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 17 ~wn~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
.++.+|.|.|++....++++..--+.
T Consensus 229 ~~~~~H~w~~~~~~~~~~ih~~~~~~ 254 (646)
T KOG0039|consen 229 VFILLHIWLHLVNFFPFLVHGLEYTI 254 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 47899999999999998888765544
No 99
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=28.61 E-value=94 Score=21.89 Aligned_cols=25 Identities=8% Similarity=0.091 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047801 53 AYIIVISVLGGIAVLLEAITWIVVIS 78 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~w~~~~~ 78 (86)
++.+++++.+++.+.+ ++..++.+|
T Consensus 97 ~~~Vl~g~s~l~i~yf-vir~~R~r~ 121 (163)
T PF06679_consen 97 ALYVLVGLSALAILYF-VIRTFRLRR 121 (163)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence 4444444443333322 334444444
No 100
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=28.21 E-value=81 Score=24.43 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc
Q 047801 58 ISVLGGIAVLLEAITWIVVISRKSRSR 84 (86)
Q Consensus 58 ~~~~~~~~i~Lev~~w~~~~~~k~~~~ 84 (86)
.++++++.++.-+..+..+.|||+.+|
T Consensus 124 aa~l~~~gi~~Yv~vYT~~lKR~T~~N 150 (304)
T COG0109 124 AAVLGLFGIFFYVVVYTLWLKRRTPQN 150 (304)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCcccc
Confidence 344455555566788888899998877
No 101
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=28.06 E-value=21 Score=27.32 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 49 KWKSAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 49 ~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
.|+++-+++.|++++..+.+-+....+.+|+|+
T Consensus 212 ~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k 244 (278)
T PF06697_consen 212 WWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKK 244 (278)
T ss_pred eEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 466443334444433333323444444444333
No 102
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=27.78 E-value=97 Score=18.89 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047801 32 LGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVV 76 (86)
Q Consensus 32 LgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~ 76 (86)
.+..-.|.||.+ +.| .|.. .++|.++++-.+...
T Consensus 22 ~~~a~~f~GLsl----neW--fyia-----ti~YtvlQig~~v~k 55 (66)
T PF10746_consen 22 DVVARYFWGLSL----NEW--FYIA-----TIAYTVLQIGYLVWK 55 (66)
T ss_pred HHHHHHHcCCCH----HHH--HHHH-----HHHHHHHHHHHHHHH
Confidence 344455666633 234 3332 345555566554443
No 103
>PLN02680 carbon-monoxide oxygenase
Probab=27.74 E-value=2.6e+02 Score=20.79 Aligned_cols=24 Identities=25% Similarity=0.193 Sum_probs=15.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 20 LYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 20 ~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
-.|.|+|-+++++-......|+-.
T Consensus 115 SlHSWlGl~t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 115 SLHSWLGLACLFLFSLQWAAGFVT 138 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777777766666666544
No 104
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.61 E-value=3.1e+02 Score=21.73 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCC
Q 047801 9 KKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNP 46 (86)
Q Consensus 9 ~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~ 46 (86)
.+-.|.++.||-.--..--.++++|+..++.|+.-+..
T Consensus 244 ek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~en 281 (374)
T KOG1608|consen 244 EKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAEN 281 (374)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 44667889999887776677889999999999876643
No 105
>PRK10209 acid-resistance membrane protein; Provisional
Probab=25.78 E-value=2.4e+02 Score=19.68 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhccC
Q 047801 28 AILVLGIINVFKGLDILN 45 (86)
Q Consensus 28 ~~iiLgiiNif~Gl~l~~ 45 (86)
..++-|+..+..+++.-+
T Consensus 114 ~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 114 LFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 334445555555555443
No 106
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=25.51 E-value=2.4e+02 Score=23.63 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCC-CchhHHH
Q 047801 23 HGVGYAILVLGIINVFKGLDILNPE-NKWKSAY 54 (86)
Q Consensus 23 ~~~Gr~~iiLgiiNif~Gl~l~~~~-~~w~~~y 54 (86)
=|+|..+.+.|.+=.-.||...+.. .+|+.+.
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~ 272 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH 272 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Confidence 4789999999999999999999875 5887433
No 107
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=25.09 E-value=2.4e+02 Score=19.53 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=22.3
Q ss_pred eeccCCCC-CccchhhhHhHHHHHHHHHHHHHHHHHhh
Q 047801 5 FLRPKKDH-KYRFHWNLYHHGVGYAILVLGIINVFKGL 41 (86)
Q Consensus 5 ~~RP~k~~-k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl 41 (86)
.+||.+.. ..|+.....|+.+--++++++++-+..=+
T Consensus 33 ~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf 70 (153)
T cd08765 33 VYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVF 70 (153)
T ss_pred HhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34654332 23567888898887776666666554333
No 108
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=24.63 E-value=89 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=20.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHH
Q 047801 46 PENKWKSAYIIVISVLGGIAVLLEAIT 72 (86)
Q Consensus 46 ~~~~w~~~y~~~~~~~~~~~i~Lev~~ 72 (86)
.+..|+++|.=++..+..++++|-.+.
T Consensus 22 ~g~~WlvtYAD~vTLLLaFFVlL~smS 48 (317)
T PRK09041 22 HGGSWKIAYADFMTAMMAFFLVMWLLS 48 (317)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 345799999999999888887764443
No 109
>PRK03427 cell division protein ZipA; Provisional
Probab=24.41 E-value=80 Score=24.79 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047801 55 IIVISVLGGIAVLLEAITWIVVISRK 80 (86)
Q Consensus 55 ~~~~~~~~~~~i~Lev~~w~~~~~~k 80 (86)
.+++|.++++++ -++-.+..||.|
T Consensus 9 LivvGAIAIiAl--L~HGlWtsRKer 32 (333)
T PRK03427 9 LIIVGAIAIIAL--LVHGFWTSRKER 32 (333)
T ss_pred HHHHHHHHHHHH--HHHhhhhccccc
Confidence 345666666554 478755555554
No 110
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=24.03 E-value=1.1e+02 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=18.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 047801 47 ENKWKSAYIIVISVLGGIAVLLE 69 (86)
Q Consensus 47 ~~~w~~~y~~~~~~~~~~~i~Le 69 (86)
+..|+++|.=++-.|..++++|=
T Consensus 24 ggaWkVAYADfvTlLMAFFlLLw 46 (421)
T PRK12799 24 GGSWKIAYADFMTAMMAFFLVMW 46 (421)
T ss_pred CcchhhhHHHHHHHHHHHHHHHH
Confidence 35799999999988888887653
No 111
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=23.71 E-value=9.3 Score=30.07 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=34.1
Q ss_pred eeeeeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCC
Q 047801 2 FALFLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPE 47 (86)
Q Consensus 2 ~a~~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~ 47 (86)
.|-++|+.+. ...-|+++|...+....+++......|....+..
T Consensus 233 ~ary~~~~~~--~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s 276 (403)
T KOG4293|consen 233 IARYLRQKPS--GDPTWFYIHRACQFTGFILGVAGFVDGLKLSNES 276 (403)
T ss_pred eEEEecccCC--CCcchhhhhhhheeeEEEEEeeeeeeeEEEccCC
Confidence 3556666666 4688999999999888888888888888887653
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.26 E-value=2.5e+02 Score=19.07 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=12.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhh
Q 047801 20 LYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 20 ~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
..|...+-+++++|++=+-.|+-
T Consensus 2 ~~~~i~~i~~iilgilli~~gI~ 24 (191)
T PF04156_consen 2 KKQRIISIILIILGILLIASGIA 24 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666664444443
No 113
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=23.21 E-value=2.3e+02 Score=19.45 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047801 49 KWKSAYIIVISVLGGIAVLLEAITWIVVISRKSRS 83 (86)
Q Consensus 49 ~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~ 83 (86)
.|.+.-+.+++.+.+..+.--+..+...++++.+|
T Consensus 91 ~~~Il~~ivvSTllvl~vtg~v~~~l~r~~~~~~~ 125 (141)
T PRK04125 91 PVQIIGVIIVATILLLACTGLFSQFILGKTEKEKE 125 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 46666666655555444443344454444444433
No 114
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=23.03 E-value=2.8e+02 Score=19.55 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=28.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhhccCCCC-chhH--HHHHHH
Q 047801 17 HWNLYHHGVGYAILVLGIINVFKGLDILNPEN-KWKS--AYIIVI 58 (86)
Q Consensus 17 ~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~-~w~~--~y~~~~ 58 (86)
++.--|.|.|-++..|=.+|.-+.-++....+ .|+. +|...+
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~ 156 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSL 156 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHH
Confidence 44444888888888888888888877776544 5553 444443
No 115
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.81 E-value=1.2e+02 Score=16.60 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047801 53 AYIIVISVLGGIAVLLEAITWIVVISR 79 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~w~~~~~~ 79 (86)
+++....++.++.+. +.-|.-.+++
T Consensus 10 ~~~~~~v~~~~~F~g--i~~w~~~~~~ 34 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIG--IVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHcccc
Confidence 344444444444443 3444444443
No 116
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.38 E-value=1.4e+02 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047801 49 KWKSAYIIVISVLGGIAVLLEAITWIVVISRKSRS 83 (86)
Q Consensus 49 ~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~ 83 (86)
.|.+.-++.+.+.++.|+ .|++++-.|.++
T Consensus 200 ~Wv~l~iG~iIi~tLtYv-----GwRKYrgek~~~ 229 (232)
T PF09577_consen 200 IWVMLSIGGIIIATLTYV-----GWRKYRGEKEKR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 365555555556677776 477776655543
No 117
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=21.99 E-value=1.2e+02 Score=19.44 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.6
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHhhh
Q 047801 16 FHWNLYHHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 16 ~~wn~~H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
-|.|-.|.-+|.++.++.++-.+.|+-
T Consensus 75 lyp~n~H~k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 75 LYPNNAHGKMGWILFVLMIVQVILGVI 101 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999888888763
No 118
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.95 E-value=2.5e+02 Score=18.52 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 047801 47 ENKWKSAYIIVISVLGGIAVLL---EAITWIVV 76 (86)
Q Consensus 47 ~~~w~~~y~~~~~~~~~~~i~L---ev~~w~~~ 76 (86)
+++|...-+++++.+++-.++. ....|++.
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~ 46 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKY 46 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4578877777776665544443 34445544
No 119
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=21.94 E-value=3.8e+02 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=19.0
Q ss_pred CccchhhhHhHHHHHHHHHHHHHHHHH
Q 047801 13 KYRFHWNLYHHGVGYAILVLGIINVFK 39 (86)
Q Consensus 13 k~R~~wn~~H~~~Gr~~iiLgiiNif~ 39 (86)
|.-..|+|.|+.+++++-++.+.-.+.
T Consensus 72 ~~~~~iE~~HRl~a~~~gl~vi~l~~~ 98 (323)
T COG1612 72 KLIFWIEWFHRLLAGLIGLLVLLLAIL 98 (323)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999997766555444443
No 120
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=21.32 E-value=2.6e+02 Score=18.59 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=24.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhccCC-CCchhHHHHHHHHHH
Q 047801 20 LYHHGVGYAILVLGIINVFKGLDILNP-ENKWKSAYIIVISVL 61 (86)
Q Consensus 20 ~~H~~~Gr~~iiLgiiNif~Gl~l~~~-~~~w~~~y~~~~~~~ 61 (86)
.-.||.|++...+|++=...|+-..=. ++..+..........
T Consensus 32 M~Ch~tg~a~~~ig~vi~~~~li~~~~k~~~~~~gl~i~~i~~ 74 (124)
T PF14387_consen 32 MKCHWTGQAVTGIGAVIAVLSLIMLFVKNKKARIGLSIANIAL 74 (124)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 346778888888887777777655422 333444433333333
No 121
>COG3447 Predicted integral membrane sensor domain [Signal transduction mechanisms]
Probab=21.31 E-value=98 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.0
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHH
Q 047801 15 RFHWNLYHHGVGYAILVLGIINVF 38 (86)
Q Consensus 15 R~~wn~~H~~~Gr~~iiLgiiNif 38 (86)
|.-++|+|||+|.++-++.++=..
T Consensus 156 ~~~~~~~~WwlgdA~giL~~aPl~ 179 (308)
T COG3447 156 DFSEAWFTWWLGDAIGILALAPLG 179 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhHH
Confidence 678999999999999998875443
No 122
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.23 E-value=1.8e+02 Score=19.29 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047801 54 YIIVISVLGGIAVLLEAITWI 74 (86)
Q Consensus 54 y~~~~~~~~~~~i~Lev~~w~ 74 (86)
|.+++-+++++|++.++..+.
T Consensus 35 ~i~~~fl~s~s~li~~~~~~~ 55 (151)
T PF14163_consen 35 WIGLIFLFSVSYLIAQLLSFI 55 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555666655
No 123
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=1.5e+02 Score=18.70 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHH----HHhhhcc----CCCCchh-HHHHHH
Q 047801 26 GYAILVLGIINV----FKGLDIL----NPENKWK-SAYIIV 57 (86)
Q Consensus 26 Gr~~iiLgiiNi----f~Gl~l~----~~~~~w~-~~y~~~ 57 (86)
--++.++|.+|- +.++|+. +.++.|. ++|..+
T Consensus 10 sllLvIiGalNWGLvG~f~fdLvaalfG~gs~lsri~Yiiv 50 (79)
T COG2155 10 SLLLVILGALNWGLVGLFGFDLVAALFGVGSMLTRIIYIIV 50 (79)
T ss_pred HHHHHHHhhhhhceeeeehhhHHHHHHcCchHHHHHHHHHH
Confidence 346778888885 4567775 4556665 477543
No 124
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.02 E-value=44 Score=24.85 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047801 51 KSAYIIVISVLGGIAVLLEAITWIVV 76 (86)
Q Consensus 51 ~~~y~~~~~~~~~~~i~Lev~~w~~~ 76 (86)
++.++++.|.+.++-+++-+..++..
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR~C 63 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVRYC 63 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHHHH
Confidence 35666666666666665555555433
No 125
>COG3768 Predicted membrane protein [Function unknown]
Probab=20.93 E-value=3.9e+02 Score=21.19 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=36.7
Q ss_pred CccchhhhHhHHHHHHHHHHHHHHHHHhhhccC---CCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047801 13 KYRFHWNLYHHGVGYAILVLGIINVFKGLDILN---PENKWKS-AYIIVISVLGGIAVLLEAITWIVVIS 78 (86)
Q Consensus 13 k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~---~~~~w~~-~y~~~~~~~~~~~i~Lev~~w~~~~~ 78 (86)
..|+=+++.-..+|-..++++..-+..+.++.. ....|.- +.+.+.++.+++.+..-+.-|+...+
T Consensus 56 ~~rpr~s~~k~~~~a~~vLf~~Av~~q~~qwi~d~~qr~dWl~~~a~~v~~l~vlagv~~v~rEw~rl~r 125 (350)
T COG3768 56 PLRPRSSFWKIMLGAGGVLFSLAVGLQSVQWIRDLFQRADWLGLGAAAVGALIVLAGVGSVVREWRRLVR 125 (350)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677888888888888888777753 2234642 33333333333333323334555433
No 126
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=20.86 E-value=15 Score=32.55 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=46.4
Q ss_pred cCCCCC--ccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047801 8 PKKDHK--YRFHWNLYHHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRK 80 (86)
Q Consensus 8 P~k~~k--~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k 80 (86)
|.+.+| .|..|.-.|-..=-++.+-|++...+|+.-.+....|.-.-+++++++.++. +--+..|...++=+
T Consensus 138 p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~-VtA~nDy~qe~QF~ 211 (1034)
T KOG0204|consen 138 PEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVL-VTAVNDYRQELQFR 211 (1034)
T ss_pred CCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEE-EeecchhHHhhhhh
Confidence 444444 5677888888777778888888888888777777789765555555443332 22355566655433
No 127
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.86 E-value=1.5e+02 Score=19.27 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhcccc
Q 047801 69 EAITWIVVISRKSRS 83 (86)
Q Consensus 69 ev~~w~~~~~~k~~~ 83 (86)
-|..|+...++|++.
T Consensus 47 ~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 47 LVILWFVCCKKRKRS 61 (94)
T ss_pred HHHHHHHHHHHhhhc
Confidence 356677766665543
No 128
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=20.85 E-value=3.2e+02 Score=20.13 Aligned_cols=58 Identities=22% Similarity=0.116 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047801 22 HHGVGYAILVLGIINVFKGLDILNPENKWKSAYIIVISVLGGIAVLLEAITWIVVISRK 80 (86)
Q Consensus 22 H~~~Gr~~iiLgiiNif~Gl~l~~~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k 80 (86)
|-.+|-++++.+++-.+-|...+.........+.+.+| ++...+++-+..|...--+|
T Consensus 15 ~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~g-lvwgl~I~~lDR~ivss~~~ 72 (301)
T PF14362_consen 15 YAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFG-LVWGLVIFNLDRFIVSSIRK 72 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHhcccc
Confidence 45678888888888877776665433221112233333 22222333455666554433
No 129
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=20.52 E-value=2.1e+02 Score=21.64 Aligned_cols=39 Identities=33% Similarity=0.516 Sum_probs=32.0
Q ss_pred eeccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhc
Q 047801 5 FLRPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDI 43 (86)
Q Consensus 5 ~~RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l 43 (86)
++-|.-..++|.--=-.|..+|..+.++++++.-+|+.-
T Consensus 148 fl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~e 186 (245)
T KOG1619|consen 148 FLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLE 186 (245)
T ss_pred HhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567888888889999999999999999999933
No 130
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=20.27 E-value=3.3e+02 Score=19.33 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 047801 22 HHGVGYAILVLGIINVFKGLD 42 (86)
Q Consensus 22 H~~~Gr~~iiLgiiNif~Gl~ 42 (86)
++.+|-..+-++++=+.+.|-
T Consensus 74 R~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 74 RRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 566777777666666666654
No 131
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=20.22 E-value=4.4e+02 Score=21.41 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhccCC
Q 047801 28 AILVLGIINVFKGLDILNP 46 (86)
Q Consensus 28 ~~iiLgiiNif~Gl~l~~~ 46 (86)
++-+.+++.+..||.+..+
T Consensus 358 ~~s~~~~va~ifGMNl~~~ 376 (414)
T KOG2662|consen 358 CLSVFSVVAGIFGMNLPSS 376 (414)
T ss_pred HHHHHHHHHHHhcCCccch
Confidence 3445667788889999753
No 132
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=20.03 E-value=1.7e+02 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 047801 48 NKWKSAYIIVISVLGGIAVLLEAIT 72 (86)
Q Consensus 48 ~~w~~~y~~~~~~~~~~~i~Lev~~ 72 (86)
..|+++|+=++..+..++|+|-.++
T Consensus 13 ~~W~vtyaD~~TlLlafFvlL~s~s 37 (230)
T PRK06925 13 PKWMVTFSDLITLILVFFILLFSMS 37 (230)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhh
Confidence 4699999999999888888764444
Done!