Query 047801
Match_columns 86
No_of_seqs 112 out of 202
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 88.6 0.8 2.7E-05 33.4 5.3 39 29-67 289-328 (339)
2 2l2t_A Receptor tyrosine-prote 85.0 2.3 7.9E-05 23.1 4.6 20 48-67 8-27 (44)
3 2ks1_B Epidermal growth factor 83.6 1.9 6.7E-05 23.4 3.9 19 49-67 10-28 (44)
4 2iub_A CORA, divalent cation t 80.9 0.71 2.4E-05 34.0 1.9 41 27-67 311-352 (363)
5 2jwa_A Receptor tyrosine-prote 78.6 3.7 0.00013 22.3 3.9 23 55-77 16-38 (44)
6 2l8s_A Integrin alpha-1; trans 75.4 8.6 0.00029 21.7 5.0 36 48-83 8-43 (54)
7 2jwa_A Receptor tyrosine-prote 74.3 7.2 0.00025 21.1 4.3 33 53-85 11-43 (44)
8 2knc_B Integrin beta-3; transm 64.4 15 0.00051 21.9 4.7 36 46-81 7-42 (79)
9 2k9p_A Pheromone alpha factor 40.1 33 0.0011 20.5 3.4 30 52-81 19-48 (80)
10 2k9j_B Integrin beta-3; transm 39.7 42 0.0014 17.6 4.2 32 50-81 10-41 (43)
11 2knc_A Integrin alpha-IIB; tra 39.4 50 0.0017 18.4 4.5 32 50-81 13-44 (54)
12 3euh_C MUKE, chromosome partit 24.5 59 0.002 23.3 3.0 29 4-32 73-102 (234)
13 3euk_L Chromosome partition pr 23.6 58 0.002 23.4 2.8 29 4-32 72-101 (238)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=88.58 E-value=0.8 Score=33.40 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHH
Q 047801 29 ILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 29 ~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i~ 67 (86)
.+.+..+.++.||...+ |...|..+|-.++++++++.++
T Consensus 289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~ 328 (339)
T 4ev6_A 289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI 328 (339)
T ss_dssp SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH
Confidence 34566778899999875 5667988999988888877664
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.03 E-value=2.3 Score=23.15 Aligned_cols=20 Identities=10% Similarity=-0.238 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 047801 48 NKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 48 ~~w~~~y~~~~~~~~~~~i~ 67 (86)
+..-++=+++.++.+++.++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVG 27 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHH
Confidence 34446666666666666554
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=83.55 E-value=1.9 Score=23.39 Aligned_cols=19 Identities=21% Similarity=-0.141 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 047801 49 KWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 49 ~w~~~y~~~~~~~~~~~i~ 67 (86)
.--++-+++.++.+++.++
T Consensus 10 ~~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHH
T ss_pred cceEEeehhHHHHHHHHHH
Confidence 3446777777777766554
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=80.95 E-value=0.71 Score=34.04 Aligned_cols=41 Identities=34% Similarity=0.603 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHH
Q 047801 27 YAILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAVL 67 (86)
Q Consensus 27 r~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i~ 67 (86)
.+.+.+..+.++.||...+ |...|+.+|-+++++++++.++
T Consensus 311 ~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~ 352 (363)
T 2iub_A 311 TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI 352 (363)
T ss_dssp HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHH
Confidence 4455566777888988764 5567999998888888776653
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.60 E-value=3.7 Score=22.35 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047801 55 IIVISVLGGIAVLLEAITWIVVI 77 (86)
Q Consensus 55 ~~~~~~~~~~~i~Lev~~w~~~~ 77 (86)
++++++++++-+.+-+..|.+.+
T Consensus 16 ~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 16 SAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheehh
Confidence 34444443333333333343333
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=75.43 E-value=8.6 Score=21.74 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 047801 48 NKWKSAYIIVISVLGGIAVLLEAITWIVVISRKSRS 83 (86)
Q Consensus 48 ~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~ 83 (86)
..|.+.-+++.|.+.++-+++-...+.-++|+++++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~ 43 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKK 43 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcch
Confidence 347677777777777766654444444445444443
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=74.31 E-value=7.2 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 047801 53 AYIIVISVLGGIAVLLEAITWIVVISRKSRSRK 85 (86)
Q Consensus 53 ~y~~~~~~~~~~~i~Lev~~w~~~~~~k~~~~~ 85 (86)
..++..++.+++-++.-...+..+.|||+.++|
T Consensus 11 ~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 11 LTSIISAVVGILLVVVLGVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred ccchHHHHHHHHHHHHHHHHHHhheehhhhhcc
Confidence 677888888877777777779999999987765
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=64.40 E-value=15 Score=21.87 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=19.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 46 PENKWKSAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 46 ~~~~w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
+.+.+-++-+++.+++++.-++|-+..+......|+
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~Drr 42 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 42 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665555555544544444444333
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=40.09 E-value=33 Score=20.53 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 52 SAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 52 ~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
+-++++-|+-.++.+++-+..|...+|||+
T Consensus 19 ~~~~I~~G~~iGAs~llliil~lltkkrrs 48 (80)
T 2k9p_A 19 VTQAILFGVRSGAAALTLIVVWITSRSRKT 48 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 345555555555666666788887775554
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=39.70 E-value=42 Score=17.64 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 50 WKSAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 50 w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
+.++-+++.+++.+--+.|-+-.+....+.|+
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 44455555555544444445555555555554
No 11
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.38 E-value=50 Score=18.41 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 50 WKSAYIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 50 w~~~y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
|.+.-+++.|.+.++-+++-...+.=++|+++
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 66677777777666655433444444444443
No 12
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=24.45 E-value=59 Score=23.33 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.5
Q ss_pred eeeccCCCCC-ccchhhhHhHHHHHHHHHH
Q 047801 4 LFLRPKKDHK-YRFHWNLYHHGVGYAILVL 32 (86)
Q Consensus 4 ~~~RP~k~~k-~R~~wn~~H~~~Gr~~iiL 32 (86)
+.+||.+++. .|++.+-.+-.+|-.++.+
T Consensus 73 fYLrPr~ttlIprs~LSEleMlvGkvLc~l 102 (234)
T 3euh_C 73 FYLRPRSTTLIPRSVLSELDMMVGKILCYL 102 (234)
T ss_dssp EEEEECTTCSSCEEECCHHHHHHHHHHHHH
T ss_pred eEecccccCcccHHHhhHHHHHHHHHHHHH
Confidence 6789999988 8999999999999887765
No 13
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 4.00A {Haemophilus ducreyi}
Probab=23.57 E-value=58 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.2
Q ss_pred eeeccCCCCC-ccchhhhHhHHHHHHHHHH
Q 047801 4 LFLRPKKDHK-YRFHWNLYHHGVGYAILVL 32 (86)
Q Consensus 4 ~~~RP~k~~k-~R~~wn~~H~~~Gr~~iiL 32 (86)
+.+||.+++. .|++.+-.+-.+|-.++.+
T Consensus 72 FYLRPr~~tlIprs~LSEleMlvGkvLc~l 101 (238)
T 3euk_L 72 FYLRPKASTLIARSAMSEMEMLVGKVLCYL 101 (238)
T ss_dssp BCEEECSSCSSCBCCCCHHHHHHHHHHHHH
T ss_pred eEecccccCcccHHHhhHHHHHHHHHHHHH
Confidence 5789999888 8999999999999887765
Done!