Query 047801
Match_columns 86
No_of_seqs 112 out of 202
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 05:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047801.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047801hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 68.7 1.3 9.7E-05 23.7 1.9 41 26-66 13-54 (64)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 40.9 30 0.0022 24.2 5.8 41 7-47 43-83 (472)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 16.2 1.3E+02 0.0091 18.8 5.1 15 49-63 408-422 (447)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 11.7 1.2E+02 0.0089 16.3 4.2 28 54-81 73-100 (103)
5 d1t6la2 d.131.1.2 (A:136-270) 9.2 46 0.0033 20.3 0.8 21 65-85 16-36 (135)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.1 1.3E+02 0.0092 19.6 3.1 6 49-54 52-57 (248)
7 d1uw0a_ g.39.1.12 (A:) DNA lig 8.9 41 0.003 19.5 0.4 18 7-24 36-54 (117)
8 d1v54d_ f.23.1.1 (D:) Mitochon 8.4 2.2E+02 0.016 17.1 4.2 22 45-66 70-91 (144)
9 d1x2ma1 a.4.1.1 (A:8-59) Lag1 7.7 92 0.0067 15.2 1.5 15 69-83 37-51 (52)
10 d1cf7a_ a.4.5.17 (A:) Cell cyc 7.5 78 0.0057 16.8 1.2 12 34-45 46-57 (67)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=68.66 E-value=1.3 Score=23.71 Aligned_cols=41 Identities=34% Similarity=0.584 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHH
Q 047801 26 GYAILVLGIINVFKGLDILN-PENKWKSAYIIVISVLGGIAV 66 (86)
Q Consensus 26 Gr~~iiLgiiNif~Gl~l~~-~~~~w~~~y~~~~~~~~~~~i 66 (86)
.-..+.+..+..+.|+...+ |+..|..+|-.++++.++..+
T Consensus 13 t~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~ 54 (64)
T d2iuba2 13 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAV 54 (64)
T ss_dssp HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 34555667777888888764 455666666666666555444
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=40.90 E-value=30 Score=24.16 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=31.4
Q ss_pred ccCCCCCccchhhhHhHHHHHHHHHHHHHHHHHhhhccCCC
Q 047801 7 RPKKDHKYRFHWNLYHHGVGYAILVLGIINVFKGLDILNPE 47 (86)
Q Consensus 7 RP~k~~k~R~~wn~~H~~~Gr~~iiLgiiNif~Gl~l~~~~ 47 (86)
.|++++..+.+++-+.-.+-..+++.+++....|....+..
T Consensus 43 ~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~ 83 (472)
T d1wpga4 43 AEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEE 83 (472)
T ss_dssp CCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSCTTS
T ss_pred CCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556667778888888889999999999999998654433
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.21 E-value=1.3e+02 Score=18.84 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=6.5
Q ss_pred chhHHHHHHHHHHHH
Q 047801 49 KWKSAYIIVISVLGG 63 (86)
Q Consensus 49 ~w~~~y~~~~~~~~~ 63 (86)
.|...+....+..++
T Consensus 408 g~~~~~~~~~~~~~~ 422 (447)
T d1pw4a_ 408 GWDGGFMVMIGGSIL 422 (447)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 355544444433333
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.68 E-value=1.2e+02 Score=16.34 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047801 54 YIIVISVLGGIAVLLEAITWIVVISRKS 81 (86)
Q Consensus 54 y~~~~~~~~~~~i~Lev~~w~~~~~~k~ 81 (86)
...+.|......++-.+..+...+++++
T Consensus 73 ~~~~~Gi~~~~~~~~~i~~~~~~~~~~r 100 (103)
T d1r3jc_ 73 VVMVAGITSFGLVTAALATWFVGREQER 100 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444445555555544443
No 5
>d1t6la2 d.131.1.2 (A:136-270) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=9.20 E-value=46 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 047801 65 AVLLEAITWIVVISRKSRSRK 85 (86)
Q Consensus 65 ~i~Lev~~w~~~~~~k~~~~~ 85 (86)
.++.|+..|.-...|-++.+|
T Consensus 16 svV~elikWi~P~tr~KR~~K 36 (135)
T d1t6la2 16 GVVADLLKWIGPHTRVKRNVK 36 (135)
T ss_dssp HHHHHHHHHHCC---------
T ss_pred HHHHHHHHHhCCccccccccc
Confidence 356799999988766655544
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.07 E-value=1.3e+02 Score=19.59 Aligned_cols=6 Identities=33% Similarity=1.248 Sum_probs=2.6
Q ss_pred chhHHH
Q 047801 49 KWKSAY 54 (86)
Q Consensus 49 ~w~~~y 54 (86)
+||..|
T Consensus 52 p~kyi~ 57 (248)
T d2r6gf1 52 AWRYVY 57 (248)
T ss_dssp THHHHH
T ss_pred ceehhh
Confidence 455433
No 7
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=41 Score=19.51 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=12.4
Q ss_pred ccCCCCC-ccchhhhHhHH
Q 047801 7 RPKKDHK-YRFHWNLYHHG 24 (86)
Q Consensus 7 RP~k~~k-~R~~wn~~H~~ 24 (86)
-|.+.+. ....++|||.-
T Consensus 36 ~~~~~~~~~g~~~~W~H~~ 54 (117)
T d1uw0a_ 36 VPNPFSESGGDMKEWYHIK 54 (117)
T ss_dssp EECTTCSSCCEECCBCCHH
T ss_pred EeCcccccCCCcCccCCcc
Confidence 4566654 45789999973
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.38 E-value=2.2e+02 Score=17.07 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=13.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHH
Q 047801 45 NPENKWKSAYIIVISVLGGIAV 66 (86)
Q Consensus 45 ~~~~~w~~~y~~~~~~~~~~~i 66 (86)
.+...|+.+.++++..+++...
T Consensus 70 ~p~gewK~v~g~~~~~i~~s~~ 91 (144)
T d1v54d_ 70 RSTNEWKTVVGAAMFFIGFTAL 91 (144)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHH
Confidence 3445699877776655555443
No 9
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.72 E-value=92 Score=15.22 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhcccc
Q 047801 69 EAITWIVVISRKSRS 83 (86)
Q Consensus 69 ev~~w~~~~~~k~~~ 83 (86)
+|..|+..++.|.+.
T Consensus 37 qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 37 SIQRWFRQRRNQEKP 51 (52)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhcccCc
Confidence 677788887776543
No 10
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.45 E-value=78 Score=16.79 Aligned_cols=12 Identities=33% Similarity=0.828 Sum_probs=10.1
Q ss_pred HHHHHHhhhccC
Q 047801 34 IINVFKGLDILN 45 (86)
Q Consensus 34 iiNif~Gl~l~~ 45 (86)
|+|+..|+.+..
T Consensus 46 I~NVLe~igli~ 57 (67)
T d1cf7a_ 46 ITNVLEGIGLIE 57 (67)
T ss_dssp HHHHHHHHTSEE
T ss_pred HHHHHhhhhhhh
Confidence 789999998864
Done!