BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047804
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KX9|A Chain A, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2KX9|B Chain B, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2XDF|A Chain A, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2XDF|B Chain B, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 14 ELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71
EL + V + + K D LI+D N +P + + +Q+QV+ +AELAK
Sbjct: 198 ELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAK 255
>pdb|2L5H|A Chain A, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2L5H|B Chain B, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 14 ELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71
EL + V + + K D LI+D N +P + + +Q+QV+ +AELAK
Sbjct: 198 ELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAK 255
>pdb|1ZYM|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
pdb|1ZYM|B Chain B, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Length = 258
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 14 ELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71
EL + V + + K D LI+D N +P + + +Q+QV+ +AELAK
Sbjct: 198 ELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAK 255
>pdb|3EZE|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli Nmr, Restrained Regularized Mean
Structure
pdb|2EZB|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 14 Structures
pdb|2EZC|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 14 Structures
pdb|3EZB|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli
pdb|1EZA|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Nmr, Restrained Regularized Mean Structure
pdb|1EZB|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 17 Structures
pdb|1EZC|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 17 Structures
pdb|1EZD|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Nmr, 16 Structures
pdb|2EZA|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, Restrained Regularized Mean Structure
Length = 259
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 14 ELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71
EL + V + + K D LI+D N +P + + +Q+QV+ +AELAK
Sbjct: 198 ELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAK 255
>pdb|2HWG|A Chain A, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
pdb|2HWG|B Chain B, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
Length = 575
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 14 ELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71
EL + V + + K D LI+D N +P + +Q+QV+ +AELAK
Sbjct: 198 ELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKXRAVQEQVASEKAELAK 255
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 21 LATGACRTKRDCKLIMDYEANSRIRDPVYGCV 52
+A + T DC ++D E R+R+P + CV
Sbjct: 69 VAFSSAETHADCPQLLDTEDMVRLREPDWKCV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,937,593
Number of Sequences: 62578
Number of extensions: 53315
Number of successful extensions: 125
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)