Query 047804
Match_columns 81
No_of_seqs 102 out of 245
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 88.8 0.74 2.5E-05 28.9 4.5 29 53-81 40-68 (72)
2 4dzn_A Coiled-coil peptide CC- 87.7 0.73 2.5E-05 25.0 3.4 27 53-79 2-28 (33)
3 1zxa_A CGMP-dependent protein 82.3 1.9 6.4E-05 26.6 3.9 28 54-81 26-53 (67)
4 1zme_C Proline utilization tra 78.7 2.9 0.0001 23.6 3.7 26 52-77 43-68 (70)
5 1am9_A Srebp-1A, protein (ster 78.4 2.4 8.4E-05 26.0 3.5 29 52-80 49-77 (82)
6 2l5g_B Putative uncharacterize 75.4 3.6 0.00012 23.5 3.4 24 57-80 6-29 (42)
7 4e61_A Protein BIM1; EB1-like 72.4 5.9 0.0002 26.3 4.4 30 50-79 1-30 (106)
8 2yy0_A C-MYC-binding protein; 70.2 6.7 0.00023 22.7 3.8 24 56-79 29-52 (53)
9 1nkp_B MAX protein, MYC proto- 69.7 7.4 0.00025 23.4 4.1 26 52-77 46-71 (83)
10 1dh3_A Transcription factor CR 67.1 8.7 0.0003 22.1 3.9 27 54-80 23-49 (55)
11 1hlo_A Protein (transcription 66.6 6.9 0.00024 23.5 3.5 24 52-75 56-79 (80)
12 2xdj_A Uncharacterized protein 63.0 10 0.00035 23.8 3.9 24 54-77 21-44 (83)
13 2ke4_A CDC42-interacting prote 61.6 29 0.00098 22.2 6.8 42 36-78 46-87 (98)
14 3ra3_B P2F; coiled coil domain 59.3 11 0.00037 19.7 2.9 25 55-79 2-26 (28)
15 3mud_A DNA repair protein XRCC 58.7 8.3 0.00028 27.6 3.2 29 50-78 132-160 (175)
16 1uuj_A Platelet-activating fac 58.6 5 0.00017 25.8 1.9 24 55-78 60-83 (88)
17 1ic2_A Tropomyosin alpha chain 58.2 13 0.00045 22.5 3.7 26 53-78 41-66 (81)
18 2yy0_A C-MYC-binding protein; 56.8 12 0.0004 21.6 3.1 28 53-80 19-46 (53)
19 2z5i_A TM, general control pro 54.8 18 0.00062 20.7 3.7 25 53-77 12-36 (52)
20 2zvf_A Alanyl-tRNA synthetase; 54.0 42 0.0014 21.8 6.7 43 37-79 16-58 (171)
21 2wg5_A General control protein 52.1 16 0.00053 23.4 3.5 27 55-81 9-35 (109)
22 3pbf_A Pulmonary surfactant-as 52.0 14 0.00048 22.9 3.2 24 55-78 4-27 (148)
23 2er8_A Regulatory protein Leu3 51.9 8.2 0.00028 21.9 1.9 23 52-74 48-70 (72)
24 1nkp_B MAX protein, MYC proto- 51.2 30 0.001 20.6 4.5 29 52-80 53-81 (83)
25 2wt7_B Transcription factor MA 50.9 19 0.00065 23.0 3.7 50 30-79 30-81 (90)
26 2dgc_A Protein (GCN4); basic d 50.2 27 0.00092 20.5 4.0 25 54-78 31-55 (63)
27 3u1c_A Tropomyosin alpha-1 cha 50.1 22 0.00075 22.5 3.9 27 52-78 43-69 (101)
28 3gm3_A Protein tyrosine kinase 48.6 2.5 8.4E-05 29.9 -0.9 24 43-66 19-46 (153)
29 1yhn_B RILP, RAB interacting l 48.3 18 0.00062 22.2 3.1 22 60-81 10-31 (65)
30 3r4h_A Coiled coil helix CC-TE 46.9 29 0.00098 18.7 3.4 27 53-79 2-28 (34)
31 3viq_B Mating-type switching p 46.8 14 0.00048 23.6 2.5 24 54-77 9-32 (85)
32 3ol1_A Vimentin; structural ge 43.8 33 0.0011 22.2 4.0 28 53-80 20-47 (119)
33 2wt7_A Proto-oncogene protein 43.6 36 0.0012 19.6 3.9 24 54-77 31-54 (63)
34 1nlw_A MAD protein, MAX dimeri 42.3 40 0.0014 20.5 4.1 27 52-78 46-72 (80)
35 2w6a_A ARF GTPase-activating p 41.8 27 0.00091 21.4 3.1 26 55-80 29-54 (63)
36 2ic6_A Nucleocapsid protein; h 41.5 35 0.0012 21.5 3.8 24 51-74 50-73 (78)
37 3gpv_A Transcriptional regulat 40.8 36 0.0012 22.3 3.9 25 56-80 105-129 (148)
38 3i00_A HIP-I, huntingtin-inter 40.7 33 0.0011 22.7 3.8 31 32-73 30-60 (120)
39 1gk6_A Vimentin; intermediate 40.7 36 0.0012 19.6 3.5 17 54-70 8-24 (59)
40 2k48_A Nucleoprotein; viral pr 40.5 37 0.0013 22.6 4.0 23 52-74 81-103 (107)
41 3azd_A Short alpha-tropomyosin 40.4 7.9 0.00027 20.9 0.5 22 56-77 7-28 (37)
42 2pbi_A Regulator of G-protein 40.0 28 0.00095 27.2 3.8 41 30-70 174-236 (424)
43 2k48_A Nucleoprotein; viral pr 39.2 46 0.0016 22.2 4.2 26 52-77 34-59 (107)
44 1jnm_A Proto-oncogene C-JUN; B 38.5 55 0.0019 18.7 4.4 28 52-79 28-55 (62)
45 4gkw_A Spindle assembly abnorm 38.5 40 0.0014 23.8 4.0 28 53-80 46-73 (167)
46 1t2k_D Cyclic-AMP-dependent tr 38.4 55 0.0019 18.6 4.2 21 55-75 38-58 (61)
47 3uun_A Dystrophin; triple heli 38.4 59 0.002 18.9 5.2 34 44-77 27-60 (119)
48 1ci6_A Transcription factor AT 37.7 50 0.0017 19.2 3.9 25 54-78 31-55 (63)
49 3twe_A Alpha4H; unknown functi 37.7 43 0.0015 17.2 3.3 22 56-77 4-25 (27)
50 3u59_A Tropomyosin beta chain; 37.7 41 0.0014 20.9 3.7 25 54-78 45-69 (101)
51 1ef1_C Moesin; membrane, FERM 37.6 12 0.0004 24.1 1.1 20 54-73 27-46 (90)
52 1gu4_A CAAT/enhancer binding p 37.5 46 0.0016 20.5 3.8 27 53-79 43-69 (78)
53 1x8y_A Lamin A/C; structural p 37.4 46 0.0016 20.3 3.9 34 37-70 19-52 (86)
54 2ic9_A Nucleocapsid protein; h 37.0 43 0.0015 21.8 3.8 23 52-74 51-73 (96)
55 3swk_A Vimentin; cytoskeleton, 36.6 31 0.0011 21.3 2.9 25 55-79 2-26 (86)
56 1go4_E MAD1 (mitotic arrest de 36.2 59 0.002 21.1 4.3 28 53-80 68-95 (100)
57 3efg_A Protein SLYX homolog; x 36.1 32 0.0011 21.1 2.9 26 53-78 35-60 (78)
58 1buu_A Protein (mannose-bindin 35.2 27 0.00092 22.5 2.6 23 52-74 22-44 (168)
59 2w6b_A RHO guanine nucleotide 35.2 70 0.0024 19.1 4.2 26 52-77 9-34 (56)
60 3trt_A Vimentin; cytoskeleton, 34.6 44 0.0015 19.5 3.3 23 51-73 54-76 (77)
61 2lw1_A ABC transporter ATP-bin 34.3 57 0.0019 19.8 3.9 23 55-77 24-46 (89)
62 3uul_A Utrophin; spectrin repe 34.2 71 0.0024 18.7 5.5 35 43-77 26-60 (118)
63 1slq_A VP4; beta sandwich, gre 33.8 19 0.00064 27.5 1.9 35 46-80 235-269 (278)
64 3he5_B Synzip2; heterodimeric 33.3 53 0.0018 19.1 3.4 24 56-79 27-50 (52)
65 3kqg_A Langerin, C-type lectin 33.3 65 0.0022 20.5 4.2 24 54-77 17-40 (182)
66 3s4r_A Vimentin; alpha-helix, 33.1 64 0.0022 20.1 4.0 27 53-79 56-82 (93)
67 3w03_C DNA repair protein XRCC 32.9 55 0.0019 23.3 4.1 27 50-76 149-175 (184)
68 2xv5_A Lamin-A/C; structural p 32.7 54 0.0018 19.9 3.5 20 57-76 9-28 (74)
69 4fi5_A Nucleoprotein; structur 32.5 54 0.0019 22.0 3.8 24 51-74 67-90 (113)
70 2ic6_A Nucleocapsid protein; h 32.5 51 0.0017 20.7 3.5 26 52-77 4-29 (78)
71 1rtm_1 Mannose-binding protein 32.5 62 0.0021 20.0 3.9 20 55-74 6-25 (149)
72 1gk4_A Vimentin; intermediate 32.4 84 0.0029 19.0 4.6 40 32-71 12-51 (84)
73 2ic9_A Nucleocapsid protein; h 32.3 60 0.0021 21.1 3.9 25 53-77 5-29 (96)
74 1hjb_A Ccaat/enhancer binding 32.2 62 0.0021 20.3 3.9 25 54-78 44-68 (87)
75 1fxk_A Prefoldin; archaeal pro 32.2 72 0.0025 19.1 4.1 25 53-77 79-103 (107)
76 3i00_A HIP-I, huntingtin-inter 32.1 51 0.0018 21.7 3.6 22 54-75 16-37 (120)
77 3edu_A Beta-I spectrin, spectr 31.9 34 0.0012 22.7 2.7 42 38-79 125-166 (218)
78 2wuj_A Septum site-determining 31.6 40 0.0014 19.3 2.6 22 54-75 35-56 (57)
79 2ke4_A CDC42-interacting prote 31.3 22 0.00076 22.7 1.7 37 42-81 47-83 (98)
80 2wt7_B Transcription factor MA 30.4 64 0.0022 20.6 3.7 29 52-80 61-89 (90)
81 1ykh_A RNA polymerase II media 30.2 1.2E+02 0.004 19.9 6.2 42 3-77 59-100 (108)
82 1a93_B MAX protein, coiled coi 30.2 69 0.0024 17.3 3.8 24 54-77 8-31 (34)
83 3q4f_C DNA repair protein XRCC 30.0 63 0.0022 23.3 4.0 26 50-75 158-183 (186)
84 2zqm_A Prefoldin beta subunit 29.9 79 0.0027 19.2 4.0 27 52-78 83-109 (117)
85 1nov_D Nodamura virus coat pro 29.8 81 0.0028 18.0 3.9 37 27-69 6-42 (44)
86 1urq_A M-tomosyn isoform; tran 29.4 56 0.0019 19.2 3.1 27 50-76 1-27 (63)
87 1htn_A Tetranectin; plasminoge 29.4 31 0.0011 22.4 2.1 24 52-75 21-44 (182)
88 1l8d_A DNA double-strand break 29.2 99 0.0034 18.8 4.6 25 53-77 64-88 (112)
89 4fi5_A Nucleoprotein; structur 29.2 70 0.0024 21.4 3.9 24 54-77 23-46 (113)
90 3m9b_A Proteasome-associated A 28.6 52 0.0018 24.6 3.5 23 58-80 73-95 (251)
91 3f31_A Spectrin alpha chain, b 28.5 80 0.0027 20.0 4.0 45 33-77 58-102 (149)
92 3gp4_A Transcriptional regulat 28.3 68 0.0023 20.8 3.7 26 51-76 79-104 (142)
93 1ybx_A Conserved hypothetical 28.2 50 0.0017 22.5 3.1 27 53-79 41-67 (143)
94 3swy_A Cyclic nucleotide-gated 28.0 87 0.003 17.7 3.7 21 56-76 15-35 (46)
95 3rrk_A V-type ATPase 116 kDa s 27.8 1E+02 0.0034 22.2 4.9 29 51-79 224-252 (357)
96 3e98_A GAF domain of unknown f 27.4 49 0.0017 23.8 3.1 35 41-78 56-90 (252)
97 3lbx_A Spectrin alpha chain, e 27.1 1E+02 0.0035 19.9 4.4 44 35-78 70-113 (161)
98 3mov_A Lamin-B1; LMNB1, B-type 27.1 85 0.0029 19.7 3.9 40 32-71 23-62 (95)
99 3qh9_A Liprin-beta-2; coiled-c 26.4 83 0.0028 19.9 3.7 25 53-77 54-78 (81)
100 3ra3_A P1C; coiled coil domain 26.0 56 0.0019 16.9 2.3 21 58-78 5-25 (28)
101 1j8b_A YBAB; hypothetical prot 25.5 67 0.0023 20.6 3.2 24 55-78 10-33 (112)
102 3pp5_A BRK1, protein brick1; t 25.3 1.2E+02 0.0042 18.7 4.3 30 51-80 43-72 (73)
103 1r8d_A Transcription activator 25.3 84 0.0029 19.1 3.5 26 54-79 76-101 (109)
104 3sja_C Golgi to ER traffic pro 25.1 92 0.0031 18.8 3.6 27 52-78 31-57 (65)
105 1q06_A Transcriptional regulat 25.0 1.2E+02 0.0042 19.3 4.4 32 47-78 73-104 (135)
106 1gd2_E Transcription factor PA 24.7 1.2E+02 0.0041 18.2 4.2 22 58-79 48-69 (70)
107 1pwb_A SP-D, PSP-D, pulmonary 24.6 78 0.0027 20.3 3.4 20 55-74 33-52 (177)
108 3sjb_C Golgi to ER traffic pro 24.6 59 0.002 21.0 2.8 27 52-78 48-74 (93)
109 3swf_A CGMP-gated cation chann 24.1 1E+02 0.0035 19.1 3.7 22 55-76 16-37 (74)
110 1hwt_C Protein (heme activator 24.0 29 0.001 19.8 1.1 21 53-73 58-78 (81)
111 3tnu_B Keratin, type II cytosk 23.9 1.5E+02 0.005 19.0 6.0 40 32-71 61-100 (129)
112 3w03_C DNA repair protein XRCC 23.6 91 0.0031 22.1 3.8 25 53-77 159-183 (184)
113 1lwu_C Fibrinogen gamma chain; 23.5 2.4E+02 0.0083 21.3 6.8 11 4-14 6-16 (323)
114 1nkp_A C-MYC, MYC proto-oncoge 23.0 1.3E+02 0.0045 18.3 4.1 23 52-74 51-73 (88)
115 1q08_A Zn(II)-responsive regul 22.9 1.2E+02 0.0042 17.7 4.4 29 50-78 36-64 (99)
116 1wlq_A Geminin; coiled-coil; 2 22.8 96 0.0033 19.7 3.5 21 57-77 42-62 (83)
117 2pnv_A Small conductance calci 22.7 1.1E+02 0.0037 17.0 3.5 20 58-77 21-40 (43)
118 1k04_A FADK 1, focal adhesion 22.7 7.5 0.00026 27.5 -2.0 21 43-63 29-53 (162)
119 1fxk_C Protein (prefoldin); ar 22.6 1.1E+02 0.0039 19.1 3.9 23 56-78 11-33 (133)
120 4emc_A Monopolin complex subun 22.5 91 0.0031 22.5 3.7 8 32-39 21-28 (190)
121 3cve_A Homer protein homolog 1 22.5 1.4E+02 0.0046 18.3 4.0 25 53-77 21-45 (72)
122 3mq9_A Bone marrow stromal ant 22.3 2.4E+02 0.0082 20.8 7.6 24 53-76 397-420 (471)
123 3plt_A Sphingolipid long chain 22.0 2.4E+02 0.0082 20.7 6.2 43 30-78 114-156 (234)
124 2vz4_A Tipal, HTH-type transcr 21.6 1.1E+02 0.0037 18.6 3.6 24 55-78 76-99 (108)
125 3mq7_A Bone marrow stromal ant 21.5 1.3E+02 0.0043 20.4 4.0 24 53-76 78-101 (121)
126 3qfl_A MLA10; coiled-coil, (CC 21.1 1.5E+02 0.0052 18.4 4.2 37 30-66 72-109 (115)
127 2oqq_A Transcription factor HY 21.0 1.2E+02 0.0042 17.0 3.9 22 54-75 18-39 (42)
128 2qdq_A Talin-1; dimerisation d 20.9 1.1E+02 0.0037 17.8 3.2 17 61-77 16-32 (50)
129 3coq_A Regulatory protein GAL4 20.8 1.2E+02 0.0041 17.3 3.5 22 51-72 43-64 (89)
130 1r73_A TM1492, 50S ribosomal p 20.7 1.3E+02 0.0046 17.5 3.7 23 56-78 12-34 (66)
131 3ceg_A Baculoviral IAP repeat- 20.6 2.5E+02 0.0084 21.2 5.9 41 33-73 273-315 (323)
132 2z2q_B Coat protein gamma; wil 20.5 93 0.0032 17.7 2.7 23 47-69 20-42 (44)
133 3cvf_A Homer-3, homer protein 20.3 1.6E+02 0.0056 18.2 4.2 25 53-77 27-51 (79)
134 2yny_A General control protein 20.3 1.5E+02 0.0053 19.4 4.2 28 52-79 75-102 (106)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=88.80 E-value=0.74 Score=28.92 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFMQS 81 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~q~ 81 (81)
..|..|+.+|....+++..++.+|..|||
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46999999999999999999999999987
No 2
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.72 E-value=0.73 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|.|..|.++|..++.|++.++-+++..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998888753
No 3
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=82.25 E-value=1.9 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAFMQS 81 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~~q~ 81 (81)
.|..|+..+..-.+++..++.+|..||+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999886
No 4
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.66 E-value=2.9 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
-+.|..|+.++..|+.+|+.+++.|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999998876
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.41 E-value=2.4 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
+-.|..||.++..++.|...++..+...+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999998887543
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.38 E-value=3.6 Score=23.54 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 57 HLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 57 ~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
.|-++|+.+-.|++++.++|..+|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888887776
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=72.38 E-value=5.9 Score=26.32 Aligned_cols=30 Identities=13% Similarity=0.312 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 50 GCVGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 50 Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|+.|-+..||+++...+++++.+.+++..+
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eL 30 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQY 30 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999988888888877643
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.22 E-value=6.7 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 56 CHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
..|+.++..|+++++.++++|..|
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555543
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.71 E-value=7.4 Score=23.45 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+-.|..|+.++..++.|+..++.+..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888777666666665555443
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.14 E-value=8.7 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
.+..|+.++..|+.|...+..++..++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777766666666665543
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.56 E-value=6.9 Score=23.54 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
+-.|..|+.++..++.++..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677999999999999999887764
No 12
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.05 E-value=10 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
....|++||+.++.|++.++.++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456788888888888877776654
No 13
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.57 E-value=29 Score=22.19 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=29.0
Q ss_pred HHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 36 MDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 36 lvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
-+|+.|-=--||-. |-+-+...-+.|+.|++++.+.+..|+.
T Consensus 46 ~vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 46 DVYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777666666643 3677777777777777777777777664
No 14
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.31 E-value=11 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|..|.+....++.|++.+.-+++..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888888999998888887754
No 15
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=58.73 E-value=8.3 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 50 GCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 50 Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
=|...|..||.+++.|+.+|...+.+-..
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~ 160 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLN 160 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999887766443
No 16
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=58.63 E-value=5 Score=25.77 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
|..||+.|.+|+++++.++++|..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999888763
No 17
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.23 E-value=13 Score=22.47 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
.-|..|+..|..++.+|..++..|..
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766654
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.80 E-value=12 Score=21.63 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
--|-.|+.++..++++.+.++++++..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999998887653
No 19
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=54.80 E-value=18 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
.-|.+||+.|+.++.+|...+.+-.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3578999999999999987775543
No 20
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=53.96 E-value=42 Score=21.77 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=31.4
Q ss_pred HHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 37 DYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 37 vYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
+-+...-..=|..--...|..|+.++..++.|+..++.+++.+
T Consensus 16 l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 16 LREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443445777889999999999999999999888754
No 21
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=52.14 E-value=16 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAFMQS 81 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~~q~ 81 (81)
..+|+.++..++.++..++.++..+|+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357888888888888888888887653
No 22
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=52.01 E-value=14 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
+..|++++..++.+|..++..|.+
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~~~ 27 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVLSL 27 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999888887743
No 23
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=51.94 E-value=8.2 Score=21.93 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
-+.|..|+++|..|+..|..+.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888877765543
No 24
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.17 E-value=30 Score=20.63 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
-..+..|+.+++.++.+...++++|...+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677788899999999999998888665
No 25
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.95 E-value=19 Score=23.05 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhcc--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 30 RDCKLIMDYEANSRIR--DPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 30 ~da~~SlvYEA~aR~r--DPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
+....-=.|=++||.+ +-...--..++.|+.+++.++.|++.+..++..|
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666788888765 3333344455566666666666666666555544
No 26
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.18 E-value=27 Score=20.50 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
.+..|+.++..|+.+...+.+++..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555555543
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=50.10 E-value=22 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
=.-|..|+..+..++.+|..++..|..
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888888877777653
No 28
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=48.59 E-value=2.5 Score=29.87 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=18.4
Q ss_pred hccCCcccc----HHHHHHHHHHHHHHH
Q 047804 43 RIRDPVYGC----VGAVCHLQKQVSELQ 66 (81)
Q Consensus 43 R~rDPV~Gc----~G~I~~Lq~qi~~lq 66 (81)
|..||||++ ++.|..|.+++..++
T Consensus 19 Rt~D~VY~at~~VVkaV~~Ls~~v~~a~ 46 (153)
T 3gm3_A 19 RTDDLVYLNVMELVRAVLELKNELAQLP 46 (153)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred cCCChHHHHHHHHHHHHHHHHhhhhhcC
Confidence 778999998 477788888775543
No 29
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=48.32 E-value=18 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 047804 60 KQVSELQAELAKAQAGLAFMQS 81 (81)
Q Consensus 60 ~qi~~lq~eLa~~~~~la~~q~ 81 (81)
++-+++++.+-.++.+|+.||+
T Consensus 10 qERNELKa~vf~lqeEL~yY~~ 31 (65)
T 1yhn_B 10 QERNELKAKVFLLKEELAYFQR 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777888888888888764
No 30
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=46.85 E-value=29 Score=18.71 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|....+.+++...+.||+..+-+|+.+
T Consensus 2 gelaaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888887754
No 31
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=46.79 E-value=14 Score=23.60 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
.|..|+.++..++++++.+.++|.
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677777777777777666543
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=43.77 E-value=33 Score=22.19 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
+.|..|++||..+..+-+.+..++..+|
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999888888777777766543
No 33
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.65 E-value=36 Score=19.64 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
-+..|+.+...|+.++..++.++.
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.33 E-value=40 Score=20.45 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
+-.|..|+.+...++.|...++.+...
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888998888888887777666543
No 35
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.77 E-value=27 Score=21.37 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
|.+|-+-...+..||...|.+|..+|
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 55555555556666666666655554
No 36
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=41.49 E-value=35 Score=21.47 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 51 CVGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
--++|..||..|.+++..|+.+.+
T Consensus 50 R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 50 RRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999888887654
No 37
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.82 E-value=36 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 56 CHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
..|+++|..++..++.+...++.|+
T Consensus 105 ~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 105 ANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555543
No 38
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.74 E-value=33 Score=22.66 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHH
Q 047804 32 CKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQ 73 (81)
Q Consensus 32 a~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~ 73 (81)
-+.+|.-||.. +|..|+.+|..|++||+..+
T Consensus 30 ele~l~~E~q~-----------~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 30 QLENMKTESQR-----------VVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 34556666654 57888888888888888765
No 39
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=40.71 E-value=36 Score=19.57 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047804 54 AVCHLQKQVSELQAELA 70 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa 70 (81)
.|.+|+.++..++++++
T Consensus 8 ~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544443
No 40
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.49 E-value=37 Score=22.61 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
-++|+.||..|.+++.+||.+.+
T Consensus 81 ~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999888888887665
No 41
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=40.39 E-value=7.9 Score=20.92 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047804 56 CHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la 77 (81)
..|+..|..++.++..++.+++
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 42
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=39.96 E-value=28 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHh----hhccCCccccHHH------------------HHHHHHHHHHHHHHHH
Q 047804 30 RDCKLIMDYEAN----SRIRDPVYGCVGA------------------VCHLQKQVSELQAELA 70 (81)
Q Consensus 30 ~da~~SlvYEA~----aR~rDPV~Gc~G~------------------I~~Lq~qi~~lq~eLa 70 (81)
++-.+-+|++.+ +++.-|+.||+-+ ...++.+|++++.++.
T Consensus 174 r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 174 RNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTAVRKEIMYYQQALM 236 (424)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHHHHHHHHHHHHHhc
Confidence 555566777666 7889999998743 4678888888888875
No 43
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.18 E-value=46 Score=22.17 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
.+-|..||.+|...+.+|..++.+|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999886
No 44
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.54 E-value=55 Score=18.66 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
-+.|..|+.+...|+.++..++.+++.+
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666543
No 45
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=38.50 E-value=40 Score=23.79 Aligned_cols=28 Identities=39% Similarity=0.388 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
|.|-+||+.-...|.||.++++++...|
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888877776554
No 46
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.42 E-value=55 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047804 55 VCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
-..|+.+|..++.|+..++..
T Consensus 38 n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 47
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=38.38 E-value=59 Score=18.93 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=28.9
Q ss_pred ccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 44 IRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 44 ~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
..+|+++-.-.|..+..+...++.++..-+..+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~ 60 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVG 60 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4589999999999999999999999988776654
No 48
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.73 E-value=50 Score=19.16 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
-+..|+.+...|+.+++.++.++..
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666555543
No 49
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.71 E-value=43 Score=17.18 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047804 56 CHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la 77 (81)
-.|.++++.+|..|.+++.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888889988888887764
No 50
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=37.66 E-value=41 Score=20.93 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
-|..|+..+..++.++..++..|..
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666665543
No 51
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=37.59 E-value=12 Score=24.08 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047804 54 AVCHLQKQVSELQAELAKAQ 73 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~ 73 (81)
.-.+||.|+..|+.||+.++
T Consensus 27 Ksk~lq~QL~~Lk~ELe~lk 46 (90)
T 1ef1_C 27 KNERVQKHLKALTSELANAR 46 (90)
T ss_dssp HCHHHHHHHHHHHHHHHTTB
T ss_pred HhHHHHHHHHHHHHHHHHHh
Confidence 34578888888888887654
No 52
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.54 E-value=46 Score=20.49 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
..+..|+.+...|+.++..++.++..+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777654
No 53
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.40 E-value=46 Score=20.35 Aligned_cols=34 Identities=6% Similarity=0.110 Sum_probs=16.6
Q ss_pred HHHHhhhccCCccccHHHHHHHHHHHHHHHHHHH
Q 047804 37 DYEANSRIRDPVYGCVGAVCHLQKQVSELQAELA 70 (81)
Q Consensus 37 vYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa 70 (81)
+-|++.|..-.+-..-..|.+|+.++..++++++
T Consensus 19 l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 19 LRDLEDSLARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555444444444455555555555554443
No 54
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=37.00 E-value=43 Score=21.84 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
-++|+.||..|.+++..|+.+.+
T Consensus 51 ~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 51 RAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999998887665
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.59 E-value=31 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|..|++||..+..+-+.+..++..+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~ 26 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNL 26 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567788887777777776666544
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.18 E-value=59 Score=21.13 Aligned_cols=28 Identities=32% Similarity=0.266 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
......++.+..|++|+..++..+..++
T Consensus 68 ~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 68 VARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445688999999999999999988765
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.14 E-value=32 Score=21.09 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
-+|..-|++|..++.++..+..++..
T Consensus 35 ~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 35 EALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777766665544
No 58
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=35.21 E-value=27 Score=22.50 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
-..+..|+.++..|+.+|..++.
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33566666777777777766654
No 59
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.18 E-value=70 Score=19.08 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+-.|..|.-|++.|+.|....+.-|.
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777666655443
No 60
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.60 E-value=44 Score=19.50 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 047804 51 CVGAVCHLQKQVSELQAELAKAQ 73 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~~ 73 (81)
+--.|..|..+|+.|+.||..++
T Consensus 54 ~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34446666666666666665543
No 61
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.34 E-value=57 Score=19.76 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047804 55 VCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+-.|..+|..+.++++.++++|+
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777765
No 62
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=34.21 E-value=71 Score=18.65 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=29.2
Q ss_pred hccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 43 RIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 43 R~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
...+|+++-.-.|..+.++...++.++..-+..+.
T Consensus 26 ~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~ 60 (118)
T 3uul_A 26 QEQDDISDDVEDVKEQFATHETFMMELSAHQSSVG 60 (118)
T ss_dssp HTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999988776654
No 63
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=33.84 E-value=19 Score=27.46 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=29.7
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 46 DPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 46 DPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
-|+--.+-+=..|++||.+|+.|-+.+-+++|.-|
T Consensus 235 TPI~nSvTVRqDLerql~~LR~eFN~Lsq~iA~sq 269 (278)
T 1slq_A 235 TPITNSVTVRQDLERQLGELREEFNALSQEIAMSQ 269 (278)
T ss_dssp CCCBCCEECCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CccccchhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666778999999999999999999998755
No 64
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.33 E-value=53 Score=19.06 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 56 CHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
..|++-|..++.|++.+.++.+.+
T Consensus 27 qnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Confidence 457777888888888888877754
No 65
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=33.31 E-value=65 Score=20.50 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
.+..|+.+++.++.+|..++..|.
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555443
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.11 E-value=64 Score=20.11 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
..|..|+.+|..+..+-+.+..++..+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888887777777766666544
No 67
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.93 E-value=55 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 50 GCVGAVCHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 50 Gc~G~I~~Lq~qi~~lq~eLa~~~~~l 76 (81)
.|.+.|..|+.++..++.|-.+++.+.
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666665555544
No 68
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.71 E-value=54 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047804 57 HLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 57 ~Lq~qi~~lq~eLa~~~~~l 76 (81)
.+|..|..++++|+.+++++
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444443
No 69
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.52 E-value=54 Score=21.98 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 51 CVGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
--++|+.||..|.+++..|+...+
T Consensus 67 R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 67 REGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999888887654
No 70
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.51 E-value=51 Score=20.71 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
.+-|..||.+|...+.+|..++.+|.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLk 29 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLK 29 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999988875
No 71
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=32.45 E-value=62 Score=20.03 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047804 55 VCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~ 74 (81)
+..|+++++.++.+|..++.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666655554
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.43 E-value=84 Score=18.96 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHH
Q 047804 32 CKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71 (81)
Q Consensus 32 a~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~ 71 (81)
....-+-|++.|....+-..-..|..|+.++..++++++.
T Consensus 12 sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 12 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455777776666555566666666666666666543
No 73
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.29 E-value=60 Score=21.15 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+-|..||.+|...+.+|..++.+|.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999988875
No 74
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.24 E-value=62 Score=20.32 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
.+..|+.+...|++++..++.++..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655543
No 75
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.16 E-value=72 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
..|..|+.++..++.++..++..|.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888877777764
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.08 E-value=51 Score=21.74 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047804 54 AVCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
.|-+|+.+|..++.+|..++.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666543
No 77
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=31.89 E-value=34 Score=22.70 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 38 YEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 38 YEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
-|.+.-..+|+.+-...|..|+++...++.+|+..+..+...
T Consensus 125 ~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l 166 (218)
T 3edu_A 125 DEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQF 166 (218)
T ss_dssp HHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555568888888899999999999999998888776543
No 78
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.55 E-value=40 Score=19.28 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047804 54 AVCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
.+-.|..++..|+.+++.++.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666676666666554
No 79
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.32 E-value=22 Score=22.71 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=30.7
Q ss_pred hhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804 42 SRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS 81 (81)
Q Consensus 42 aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~q~ 81 (81)
+=..+|-+|=...+ +.+|..+...|..+++++..||+
T Consensus 47 vY~~nP~~GD~~s~---~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 47 VYEKTPQMGDPASL---EPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHCGGGCCGGGS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567988877666 88999999999999999998874
No 80
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.37 E-value=64 Score=20.55 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
.--+..|..++..+..|+...+..+..++
T Consensus 61 ~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 61 IQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677888888888888888887776554
No 81
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=30.22 E-value=1.2e+02 Score=19.87 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=27.9
Q ss_pred chHHHHHhhhhhhhHHHHhhhccccCHHHHHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 3 SFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 3 snv~k~l~~~~~~~r~~~~~~g~~~~k~da~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
.|+--+|++++|.|- ++. .|.-|+.|++.-+++++..+....
T Consensus 59 iNmHhLlNeyRPhQA------------Ret---------------------L~~~le~Qi~~kr~e~~~i~~~~~ 100 (108)
T 1ykh_A 59 VNIHHLLNEYRPHQS------------RES---------------------LIMLLEEQLEYKRGEIREIEQVCK 100 (108)
T ss_dssp HHHHHHHHHTHHHHH------------HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHH------------HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888885 333 244577777777777766665443
No 82
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.22 E-value=69 Score=17.29 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
-+...|+.|++++.+-+.+..++-
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 456788888888888888887764
No 83
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.03 E-value=63 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 50 GCVGAVCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 50 Gc~G~I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
=|.|.|..|+..+..|+.|-.+++.+
T Consensus 158 ~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 158 YCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888888888888888888877654
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.87 E-value=79 Score=19.16 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
-..|..|+.++..++.++..++..|..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777654
No 85
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=29.82 E-value=81 Score=17.96 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHH
Q 047804 27 RTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAEL 69 (81)
Q Consensus 27 ~~k~da~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eL 69 (81)
|+|+-..+++..-+ -|.|++|++..=-+++..+-++|
T Consensus 6 rVk~ilks~l~~aS------~iPGPVG~~asGi~gl~~l~~~~ 42 (44)
T 1nov_D 6 RVRSILKSGLNFAS------TIPGPVGVAATGIKGIIETIGSL 42 (44)
T ss_pred HHHHHHHHHHHHHh------cCCCchhHHHHhHHHHHHHHHHh
Confidence 34444444444433 47899999887777776665543
No 86
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.42 E-value=56 Score=19.20 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 50 GCVGAVCHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 50 Gc~G~I~~Lq~qi~~lq~eLa~~~~~l 76 (81)
|+-|-|..++.|+..+..........+
T Consensus 1 ~~~~~i~~v~~qv~ev~~iM~~ni~kv 27 (63)
T 1urq_A 1 GSHGGIEGVKGAASGVVGELARARLAL 27 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888777666555444
No 87
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=29.35 E-value=31 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
...|..|++++..++.+|..++..
T Consensus 21 ~~~~~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457788999999999999877753
No 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.24 E-value=99 Score=18.78 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
-.|...+.++..++.++..++.++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665554
No 89
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.21 E-value=70 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
-|..||.+|...+.+|..++.+|.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLk 46 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVR 46 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999998885
No 90
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.57 E-value=52 Score=24.58 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 047804 58 LQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 58 Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
|...+..++.||..++.+|..++
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555443
No 91
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=28.53 E-value=80 Score=20.05 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 33 KLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 33 ~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+.+-+.|...-+.||.||....|..+.++-..+++|+..-+..+.
T Consensus 58 l~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~ 102 (149)
T 3f31_A 58 LEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIV 102 (149)
T ss_dssp HHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667889999988899999999999999987665543
No 92
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.34 E-value=68 Score=20.84 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 51 CVGAVCHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~~~~l 76 (81)
|--....|+.++..++++++.++..+
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~~ 104 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEAL 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444433
No 93
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=28.19 E-value=50 Score=22.52 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|-+..+-+|.++.|+++..+|++|+..
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~ 67 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEK 67 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457888999999999999999999853
No 94
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.96 E-value=87 Score=17.70 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047804 56 CHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~l 76 (81)
-.||-....+-+|....|..|
T Consensus 15 d~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 15 DTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 95
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.76 E-value=1e+02 Score=22.20 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 51 CVGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
+.-.+..|+.+++.++.++..+.++|..+
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999998888653
No 96
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.36 E-value=49 Score=23.75 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=20.1
Q ss_pred hhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 41 NSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 41 ~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
..+...|.. |+|+-.+.|+..+++++..++.+|..
T Consensus 56 ~L~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L~~ 90 (252)
T 3e98_A 56 ELRIPHQPG---DAVSLVERQVRLLRERNIEMRHRLSQ 90 (252)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCC---CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667763 78888889999998888888887753
No 97
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=27.14 E-value=1e+02 Score=19.94 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=34.8
Q ss_pred HHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 35 IMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 35 SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
+-+.|...-+.||.||-...|..+.++-..+++||..-+..+..
T Consensus 70 ~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~ 113 (161)
T 3lbx_A 70 KWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSE 113 (161)
T ss_dssp HHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677888898999999999999999999987766543
No 98
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.13 E-value=85 Score=19.71 Aligned_cols=40 Identities=8% Similarity=0.083 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHH
Q 047804 32 CKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71 (81)
Q Consensus 32 a~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~ 71 (81)
....-+-|.+.|.....-+.-+.|..|+.++..++++++.
T Consensus 23 ~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 23 ACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666655555555556666666666666665543
No 99
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.43 E-value=83 Score=19.92 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
--|+.||+|+..-.+|+..++.+|.
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4456666666666666666666554
No 100
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.95 E-value=56 Score=16.87 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 047804 58 LQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 58 Lq~qi~~lq~eLa~~~~~la~ 78 (81)
|+-+.+.++..++.++++++.
T Consensus 5 lefendaleqkiaalkqkias 25 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH
Confidence 444455555555555555554
No 101
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=25.50 E-value=67 Score=20.63 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
...+-+|.++.|+++..+|++|+.
T Consensus 10 m~~mmkqaq~mQ~~m~~~QeeL~~ 33 (112)
T 1j8b_A 10 LGGLMKQAQQMQEKMQKMQEEIAQ 33 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677888888888888888875
No 102
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=25.30 E-value=1.2e+02 Score=18.65 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804 51 CVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~~~~la~~q 80 (81)
|-..+..|...+..++..|..+.++|+..+
T Consensus 43 ce~KLa~ln~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 43 TRNKLSDLNEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456688899999999999999999988654
No 103
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.30 E-value=84 Score=19.09 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 54 AVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
....|+.|++.++++++.++..++.+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l 101 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887777777777666543
No 104
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.14 E-value=92 Score=18.85 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
+.--.+|..+++.+.+||.....+|..
T Consensus 31 FAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 31 YAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344567889999999999988888763
No 105
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.99 E-value=1.2e+02 Score=19.25 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=21.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 47 PVYGCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 47 PV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
|-..|.-....|+.++..++++++.++..+..
T Consensus 73 ~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~ 104 (135)
T 1q06_A 73 PQRHSADVKRRTLEKVAEIERHIEELQSMRDQ 104 (135)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888777777766655543
No 106
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.66 E-value=1.2e+02 Score=18.21 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 047804 58 LQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 58 Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
|..++..|+.++..++.++..|
T Consensus 48 l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555555555555555443
No 107
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=24.60 E-value=78 Score=20.28 Aligned_cols=20 Identities=40% Similarity=0.409 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047804 55 VCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~ 74 (81)
+..|+.++..|+.+|..++.
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 66677777777777777665
No 108
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=24.59 E-value=59 Score=20.99 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
+.-=-+|..+++.+.+||...+.+|..
T Consensus 48 FAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 48 YAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888888888888877764
No 109
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.07 E-value=1e+02 Score=19.14 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047804 55 VCHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~l 76 (81)
+-.||-....+.+|....|.+|
T Consensus 16 ld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 16 VDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 110
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.97 E-value=29 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047804 53 GAVCHLQKQVSELQAELAKAQ 73 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~ 73 (81)
..|..|+.+|..|+..|..++
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345556666665555554443
No 111
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.86 E-value=1.5e+02 Score=18.95 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHH
Q 047804 32 CKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAK 71 (81)
Q Consensus 32 a~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~ 71 (81)
....-+-|++.|..-.+-..-+.|..|+.++..++++++.
T Consensus 61 ~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 61 NLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444455666666555555555566666666555555443
No 112
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.55 E-value=91 Score=22.12 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
..+.+||++.+.|+.|.+.++.+|.
T Consensus 159 ~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 159 AKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888764
No 113
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.49 E-value=2.4e+02 Score=21.29 Aligned_cols=11 Identities=36% Similarity=0.371 Sum_probs=6.1
Q ss_pred hHHHHHhhhhh
Q 047804 4 FFLKLLESFRE 14 (81)
Q Consensus 4 nv~k~l~~~~~ 14 (81)
++.+|++++..
T Consensus 6 ~~~~~~~~~~~ 16 (323)
T 1lwu_C 6 TVQKILEEVRI 16 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45566665543
No 114
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.03 E-value=1.3e+02 Score=18.31 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047804 52 VGAVCHLQKQVSELQAELAKAQA 74 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~ 74 (81)
+-.|..|+.+...+..+...++.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888887776655554443
No 115
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.88 E-value=1.2e+02 Score=17.65 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 50 GCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 50 Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
.|.-....|+.++..++++++.++..+..
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~ 64 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRS 64 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888887777777776655543
No 116
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.77 E-value=96 Score=19.68 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047804 57 HLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 57 ~Lq~qi~~lq~eLa~~~~~la 77 (81)
+|..+|..++.|++.++.++.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 117
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.70 E-value=1.1e+02 Score=17.01 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047804 58 LQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 58 Lq~qi~~lq~eLa~~~~~la 77 (81)
|+++|..+...|..+++.|.
T Consensus 21 LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 21 FEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665554
No 118
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=22.68 E-value=7.5 Score=27.54 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=15.9
Q ss_pred hccCCccccH----HHHHHHHHHHH
Q 047804 43 RIRDPVYGCV----GAVCHLQKQVS 63 (81)
Q Consensus 43 R~rDPV~Gc~----G~I~~Lq~qi~ 63 (81)
|..|+||+++ +.|..|.+.+.
T Consensus 29 Rt~D~Vy~at~~VVkaV~~Ls~~v~ 53 (162)
T 1k04_A 29 RSNDKVYENVTGLVKAVIEMSSKIQ 53 (162)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhh
Confidence 6778888775 77778888774
No 119
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.59 E-value=1.1e+02 Score=19.14 Aligned_cols=23 Identities=22% Similarity=0.214 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 047804 56 CHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
..|+.++..+++++..++..+..
T Consensus 11 q~l~~~~~~l~~~~~~l~~~i~e 33 (133)
T 1fxk_C 11 NIYQSQVELIQQQMEAVRATISE 33 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 120
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.53 E-value=91 Score=22.49 Aligned_cols=8 Identities=13% Similarity=-0.209 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 047804 32 CKLIMDYE 39 (81)
Q Consensus 32 a~~SlvYE 39 (81)
.+.+++.|
T Consensus 21 LV~~L~~E 28 (190)
T 4emc_A 21 LVANLVNE 28 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 121
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.51 E-value=1.4e+02 Score=18.29 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+.|..|+++++.-+.+-...+++|.
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666655555445545544
No 122
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.27 E-value=2.4e+02 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~l 76 (81)
-+...||+||.++|.-+..++++-
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHh
Confidence 567888888888888887776654
No 123
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.02 E-value=2.4e+02 Score=20.70 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 30 RDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 30 ~da~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
+.+.+-|. ...-+||-. ..+..|++++...+++...+.++|..
T Consensus 114 ~~l~~~I~---kLk~k~P~s---~kl~~LeqELvraEae~lvaEAqL~n 156 (234)
T 3plt_A 114 EKITDEIA---HLKYKDPQS---TKIPVLEQELVRAEAESLVAEAQLSN 156 (234)
T ss_dssp HHHHHHHH---HHHHHCTTC---THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHhccCCCC---chHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555553 233458976 46889999999999999998888864
No 124
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.64 E-value=1.1e+02 Score=18.57 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047804 55 VCHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 55 I~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
...|+.+++.++++++.++..+..
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~ 99 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAA 99 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655543
No 125
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.48 E-value=1.3e+02 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGL 76 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~l 76 (81)
|.|..|.+++.+..+|+..++.+.
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444433
No 126
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=21.15 E-value=1.5e+02 Score=18.38 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhccCC-ccccHHHHHHHHHHHHHHH
Q 047804 30 RDCKLIMDYEANSRIRDP-VYGCVGAVCHLQKQVSELQ 66 (81)
Q Consensus 30 ~da~~SlvYEA~aR~rDP-V~Gc~G~I~~Lq~qi~~lq 66 (81)
+|+++...|+++.....+ -.|+.|.+...-..+..++
T Consensus 72 ED~iD~f~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~ 109 (115)
T 3qfl_A 72 EDVVDKFLVQVDGIKSDDNNNKFKGLMKRTTELLKKVK 109 (115)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccccchHHHHHHHHHHHHhhhH
Confidence 788888888887543221 2567777666665555543
No 127
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.99 E-value=1.2e+02 Score=17.01 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047804 54 AVCHLQKQVSELQAELAKAQAG 75 (81)
Q Consensus 54 ~I~~Lq~qi~~lq~eLa~~~~~ 75 (81)
....|++.|+.++.|-..+++-
T Consensus 18 ~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3455555555555555555443
No 128
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=20.85 E-value=1.1e+02 Score=17.77 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047804 61 QVSELQAELAKAQAGLA 77 (81)
Q Consensus 61 qi~~lq~eLa~~~~~la 77 (81)
.|-..+.||..++.+|+
T Consensus 16 ~iLr~ErELEeAr~~La 32 (50)
T 2qdq_A 16 EMLRKERELEEARKKLA 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555554
No 129
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.83 E-value=1.2e+02 Score=17.28 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 047804 51 CVGAVCHLQKQVSELQAELAKA 72 (81)
Q Consensus 51 c~G~I~~Lq~qi~~lq~eLa~~ 72 (81)
.-+.|..|+.+|..++..|..+
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999998888765
No 130
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=20.72 E-value=1.3e+02 Score=17.51 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 047804 56 CHLQKQVSELQAELAKAQAGLAF 78 (81)
Q Consensus 56 ~~Lq~qi~~lq~eLa~~~~~la~ 78 (81)
-.|+.++..++.||..++-+.+.
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~at 34 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAM 34 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46888888888888888766654
No 131
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=20.56 E-value=2.5e+02 Score=21.24 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhccCCcccc--HHHHHHHHHHHHHHHHHHHHHH
Q 047804 33 KLIMDYEANSRIRDPVYGC--VGAVCHLQKQVSELQAELAKAQ 73 (81)
Q Consensus 33 ~~SlvYEA~aR~rDPV~Gc--~G~I~~Lq~qi~~lq~eLa~~~ 73 (81)
.+.-+.|+.....|+--|- .|....|.+.+..|++||++++
T Consensus 273 ~~~w~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 315 (323)
T 3ceg_A 273 CEEWIADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLP 315 (323)
T ss_dssp HHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhhhccccccchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 4445567766667776552 3445667777788877777653
No 132
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=20.48 E-value=93 Score=17.71 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=16.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHH
Q 047804 47 PVYGCVGAVCHLQKQVSELQAEL 69 (81)
Q Consensus 47 PV~Gc~G~I~~Lq~qi~~lq~eL 69 (81)
-|.|++|++..=-+++..+-++|
T Consensus 20 ~iPGPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 20 NIPGPIGVAASGISGLSALFEGF 42 (44)
T ss_pred cCCCchhHHHHhHHHHHHHHHHh
Confidence 47899999887777776665544
No 133
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.31 E-value=1.6e+02 Score=18.18 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047804 53 GAVCHLQKQVSELQAELAKAQAGLA 77 (81)
Q Consensus 53 G~I~~Lq~qi~~lq~eLa~~~~~la 77 (81)
+.|..|+++++.-+.+-..++++|.
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555555554
No 134
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=20.28 E-value=1.5e+02 Score=19.42 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804 52 VGAVCHLQKQVSELQAELAKAQAGLAFM 79 (81)
Q Consensus 52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~~ 79 (81)
-+.|..+..+|..+..++..++.+|+.+
T Consensus 75 d~svt~i~~~I~~lt~~i~~~~~~i~~~ 102 (106)
T 2yny_A 75 NTSMKQIEDKIEEILSKIYHIENEIARI 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777654
Done!