BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047807
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 33 SGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQ 92
S VF GGY W R++ +PKG + DHLS+YL + ++ S P WS + L V +Q
Sbjct: 74 SDVFVVGGYKW----RILIFPKG-NNVDHLSMYLDVSDAASLP-YGWSRYAQFSLAVVNQ 127
Query: 93 IRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP 152
I Y ++ + F+ + S+ GF F+ L+EL +GYL+N+T AE+ V K
Sbjct: 128 IHTRYTVRKETQ---HQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKV 184
Query: 153 TD 154
D
Sbjct: 185 LD 186
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 33 SGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQ 92
S VF GGY W R++ +PKG + DHLS+YL + ++ + P WS + L V +Q
Sbjct: 73 SDVFVVGGYKW----RILIFPKG-NNVDHLSMYLDVADAANLP-YGWSRYSQFSLAVVNQ 126
Query: 93 IRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP 152
+ Y ++ + F+ + S+ GF F+ L+EL + +GYL+N+T AE+ V K
Sbjct: 127 VNNRYSIRKETQ---HQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKV 183
Query: 153 TD 154
D
Sbjct: 184 LD 185
>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC
OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1
Length = 1304
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 29 DGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI-DESNSYPNAAWSVNVCYRL 87
+ F S +F S G W + YP G+ SS+++S++L+ DE NV + L
Sbjct: 1187 EPFISPIFMSCGRKWII----KIYPMGQPSSNYMSVFLEYRDEGEE--------NVHFSL 1234
Query: 88 FVYDQIRKDYLAVQDAKSGVR-TFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAE 146
+ Q+ + Q K V+ F+ +++ G+ KF+ ++ L G+L+N+T
Sbjct: 1235 ELISQLYPE----QSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVS 1290
Query: 147 IYVIKP 152
I +KP
Sbjct: 1291 ILQLKP 1296
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 29 DGFESGVFESGGYYWCVCTRLVFYPKGK--GSSDHLSLYL-KIDESNSYPNAAWSVNVCY 85
D F S +F G W R FY GK +S LS+++ D N+ ++ Y
Sbjct: 1040 DQFYSPIFSLIGSNW----RCKFYSNGKDASTSGKLSIFISNCDLLNNPFTIFLEKSISY 1095
Query: 86 RLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNT 140
+L + +Q + ++Q KS TF + G+ F+ L L G+L+NNT
Sbjct: 1096 KLTLINQ-KNPNESIQ--KSSSHTFSIKEFNHGYGSFIGLFSLLNPNNGFLVNNT 1147
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana
GN=At5g43560 PE=1 SV=1
Length = 1055
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 35 VFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIR 94
VFE GGY W + + YP+G +HLSL+L + WS + + V ++
Sbjct: 90 VFEVGGYKWYI----LIYPQGCDVCNHLSLFLCVAHHEKLL-PGWSHFAQFTIAVSNKDP 144
Query: 95 KDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTC-TFGAEIYVIK 151
K + F ++ + G+ KF+ L +L + G++ ++ C T A++ VI+
Sbjct: 145 KK----SKHSDTLHRFWKKEHDWGWKKFIELPKLKE---GFIDDSGCLTIKAQVQVIR 195
>sp|P90846|BAT39_CAEEL BTB and MATH domain-containing protein 39 OS=Caenorhabditis elegans
GN=bath-39 PE=4 SV=2
Length = 370
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 20 FNLLADSTVDG-FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAA 78
FN+ +DG + S + E G YWCV R+ K +S+YL + +NS P+
Sbjct: 55 FNIYNFEHLDGSYTSDLKEHNGIYWCV--RIQSNKAAKSQKRRVSIYLVCNPNNSSPD-- 110
Query: 79 WSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLL 137
WSV + + + K + + TF + G + T EL G+L+
Sbjct: 111 WSVTTSFGFRIINSWGKSRNKISTLFN--HTFTSNETSKGTSGYCTWDELTAANSGFLV 167
>sp|P05981|HEPS_HUMAN Serine protease hepsin OS=Homo sapiens GN=HPN PE=1 SV=1
Length = 417
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 55 GKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQT 114
G S +++ L+ D+ YP S + RL V+D+ + + ++S R
Sbjct: 33 GAASWAIVAVLLRSDQEPLYPVQVSSADA--RLMVFDKTEGTWRLLCSSRSNARVAGLSC 90
Query: 115 SELGFDKFLTLAELNQHLKGYLLNNTCTF 143
E+GF + LT +EL+ G N T F
Sbjct: 91 EEMGFLRALTHSELDVRTAG--ANGTSGF 117
>sp|Q5R5E8|HEPS_PONAB Serine protease hepsin OS=Pongo abelii GN=HPN PE=2 SV=1
Length = 417
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 55 GKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQT 114
G S +++ L+ D+ YP S + RL V+D+ + + ++S R
Sbjct: 33 GAASWAIVAVLLRSDQEPLYPVQVSSADA--RLMVFDKTEGTWRLLCSSRSNARVAGLSC 90
Query: 115 SELGFDKFLTLAELNQHLKG 134
E+GF + LT +EL+ G
Sbjct: 91 VEMGFLRALTHSELDVRTAG 110
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis
thaliana GN=BPM3 PE=1 SV=1
Length = 408
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 15 FKIKSFNLLADSTVDGF-ESGVFESGGYYWCVCTRLVFYPKGKGSSD---HLSLYLKIDE 70
F I+ ++L + F +S +F GGY W + FYP GK D ++SL++ +
Sbjct: 29 FTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAI----YFYPDGKNPEDQSSYISLFIALAS 84
Query: 71 SNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDA-----KSGVRTFDQQTSELGFDKFL-- 123
++ + + L + DQ K V + G T + S G+ +F
Sbjct: 85 DSN------DIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGYKRFFKR 138
Query: 124 TLAELNQHLKGYLLNNTCTFG 144
+ E + +LK L CT G
Sbjct: 139 SALETSDYLKDDCLVINCTVG 159
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 25 DSTVDGFESGVFESGGYYWCVCTRLVFYPKGKG----SSDHLSLYLKIDESNSYPNAAWS 80
D T D SG G R V Y K S H+ + D ++ YP+ +
Sbjct: 670 DGTPDAAGSGATSENGGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQA 729
Query: 81 VNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDK-FLTLAELNQHLKGYLLNN 139
N+C+ D++ D +Q + D T E+G K F A + + L G LL +
Sbjct: 730 HNLCFTTLALDEV--DLAGLQP------SVDYSTFEVGDQKLFFVHAHIRESLLGILLRD 781
Query: 140 TCTFGAEIYVIKPTDT--EGTLSKEDSLAIKV 169
+ PT T E L + AIKV
Sbjct: 782 WLAMRKAVRARIPTSTPEEAVLLDKQQSAIKV 813
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 11 ADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLK 67
A Y + +K+F+ L D T S +F++G W R+V +PKG +++ S++L+
Sbjct: 52 ASYSWVVKNFSTLEDKTY----SPLFKAGHTTW----RIVLFPKGCNQTEYASVFLE 100
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 25 DSTVDGFESGVFESGGYYWCVCTRLVFYPKGKG----SSDHLSLYLKIDESNSYPNAAWS 80
D T D SG G R V Y K S H+ + D ++ YP+ +
Sbjct: 670 DGTPDAAGSGATSENGGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQA 729
Query: 81 VNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDK-FLTLAELNQHLKGYLLNN 139
N+C+ D++ D +Q + + T E+G K F A + + L G LL +
Sbjct: 730 HNLCFTTLALDEV--DLAGLQP------SVNYSTFEVGDQKLFFVHAHIRESLLGILLRD 781
Query: 140 TCTFGAEIYVIKPTDT--EGTLSKEDSLAIKV 169
+ PT T E L + AIKV
Sbjct: 782 WLAMRKAVRARIPTSTPEEAVLLDKQQSAIKV 813
>sp|Q6IWL4|TRAF6_DANRE TNF receptor-associated factor 6 OS=Danio rerio GN=traf6 PE=2 SV=2
Length = 542
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 13 YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRL-VFYPKGKGSSDHLSLYLK 67
Y++++++F+ + G S F +G + +C RL + P S+ +SL++
Sbjct: 377 YVWRVENFSHHLRNQEAGQPIVLHSPPFYTGRPGYKLCLRLHLQTPSAPRCSNFISLFVH 436
Query: 68 IDESNSYPNAAWSVNVCYRLFVYDQIR-KDYLAVQDAKSGVRTFDQQT-----SELGFDK 121
+ +W + RL V DQ+ + ++ V + K ++ F + T G+
Sbjct: 437 TMQGEFDSQLSWPLQGTIRLAVLDQVEGQHHIEVMETKPDLQAFQRPTVMRNPKGFGYVT 496
Query: 122 FLTLAELNQ 130
FL L L Q
Sbjct: 497 FLHLQALRQ 505
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2
Length = 501
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 13 YIFKIKSFNLLADSTVDGFESGVFE----SGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
+I+KI F V G +F + Y + +C R+ G G HLSL+ +
Sbjct: 354 FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVV 413
Query: 69 DESNSYPNAAWSVNVCYRLFVYDQIRKDYL 98
+ + W N L + DQ ++++
Sbjct: 414 MKGPNDALLRWPFNQKVTLMLLDQNNREHV 443
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2
Length = 557
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Query: 14 IFKIKSFNLLADSTVDGFESGVFESGGYY----WCVCTRLVFYPKGKGSSDHLSLYLKID 69
I+K+ + + VDG +F Y + +C R G G HLSLY +
Sbjct: 407 IWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVM 466
Query: 70 ESNSYPNAAWSVNVCYRLFVYDQI-RKDYLAVQDAKSGVRTFDQQTSEL----GFDKFLT 124
W L + DQ +K+ + +F + E+ G +F+
Sbjct: 467 RGEFDSLLQWPFRQRVTLMLLDQSGKKNIMETFKPDPNSSSFKRPDGEMNIASGCPRFVA 526
Query: 125 LAELNQHLKGYLLNNT 140
+ L Y+ ++T
Sbjct: 527 HSVLENAKNAYIKDDT 542
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2 OS=Mus musculus GN=Traf2 PE=1 SV=1
Length = 501
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 13 YIFKIKSFNLLADSTVDGFESGVFE----SGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
+I+KI F V G +F + Y + +C R+ G G HLSL+ +
Sbjct: 354 FIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVV 413
Query: 69 DESNSYPNAAWSVNVCYRLFVYDQIRKDYL 98
+ + W N L + D ++++
Sbjct: 414 MKGPNDALLQWPFNQKVTLMLLDHNNREHV 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,419,192
Number of Sequences: 539616
Number of extensions: 2597653
Number of successful extensions: 4555
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4546
Number of HSP's gapped (non-prelim): 33
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)