Query 047807
Match_columns 169
No_of_seqs 161 out of 1061
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 100.0 9.8E-34 3.3E-38 203.9 12.9 137 4-152 4-145 (145)
2 2foj_A Ubiquitin carboxyl-term 100.0 3.3E-33 1.1E-37 203.1 14.2 135 8-155 16-153 (155)
3 4gjh_A TNF receptor-associated 100.0 3.3E-31 1.1E-35 196.9 9.0 141 7-152 20-175 (178)
4 4ghu_A TNF receptor-associated 100.0 1.1E-30 3.7E-35 197.2 8.1 141 8-155 37-192 (198)
5 1lb6_A TNF receptor-associated 100.0 1.4E-29 4.9E-34 184.9 9.9 138 8-152 2-158 (160)
6 3hqi_A Speckle-type POZ protei 100.0 2.2E-29 7.6E-34 201.2 11.2 148 8-167 4-159 (312)
7 1ca9_A TRAF2, protein (TNF rec 100.0 2E-29 6.7E-34 189.4 7.6 138 8-151 40-191 (192)
8 2gkw_A TNF receptor-associated 100.0 1.9E-29 6.6E-34 189.5 7.1 136 9-151 38-188 (192)
9 1d00_A Tumor necrosis factor r 100.0 2.6E-29 9E-34 184.7 7.4 138 8-151 16-167 (168)
10 1flk_A TNF receptor associated 99.9 1.1E-28 3.8E-33 189.9 7.1 138 9-153 74-226 (228)
11 2f1z_A Ubiquitin carboxyl-term 99.9 2.3E-27 7.9E-32 201.6 11.9 134 8-154 28-164 (522)
12 4gwm_A Meprin A subunit beta; 99.7 5.4E-17 1.8E-21 139.0 9.3 145 5-158 400-574 (592)
13 1yel_A AT1G16640; CESG, protei 63.8 23 0.00079 22.6 6.0 21 117-144 67-87 (104)
14 3v0r_A Major allergen ALT A 1; 52.8 3.2 0.00011 28.4 0.2 30 8-38 9-38 (133)
15 1wid_A DNA-binding protein RAV 30.6 51 0.0018 22.0 3.5 13 117-129 81-93 (130)
16 1jya_A YOPE regulator; specifi 26.6 95 0.0032 21.0 4.2 32 29-71 24-55 (130)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=100.00 E-value=9.8e-34 Score=203.86 Aligned_cols=137 Identities=24% Similarity=0.376 Sum_probs=115.9
Q ss_pred CCCcCCCCeEEEEEcCcccccccCCCcEEeCcEEEcCe---EeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCC
Q 047807 4 EKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGY---YWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAA 78 (169)
Q Consensus 4 ~~~~~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~---~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~ 78 (169)
.|.+...++|+|+|+|||.+++..++.++||+|.+||| +| +|++||+|+ +..+|||+||+|.+.. +
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~----~- 74 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW----CLRVNPKGLDEESKDYLSLYLLLVSCP----K- 74 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEE----EEEEETTCSSGGGTTEEEEEEEEEECS----S-
T ss_pred CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceE----EEEEEcCCCCCCCCCeEEEEEEEcCCC----C-
Confidence 46788899999999999998752247899999999995 99 999999998 3468999999998752 2
Q ss_pred eEEEEEEEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecC
Q 047807 79 WSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP 152 (169)
Q Consensus 79 w~~~~~f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~ 152 (169)
|+++|+|+|+|+||+++....... ...+.|.. ..+|||++||++++|++++++||+||+|+|+|+|+|+++
T Consensus 75 w~v~a~f~l~llnq~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 75 SEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEC--SSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred CcEEEEEEEEEEecCCCceeeecc--cceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999999999999886554321 35688874 689999999999999776799999999999999999864
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=100.00 E-value=3.3e-33 Score=203.09 Aligned_cols=135 Identities=16% Similarity=0.301 Sum_probs=114.4
Q ss_pred CCCCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCC---CCCeEEEEEEeccCCCCCCCCeEEEEE
Q 047807 8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKG---SSDHLSLYLKIDESNSYPNAAWSVNVC 84 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~---~~~~lSvyL~~~~~~~~~~~~w~~~~~ 84 (169)
...++|+|+|+|||.++ +.++|+.|.+||++| +|++||+|+. ..+|||+||+|.... .+.+ |++.|+
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W----~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~-w~v~a~ 85 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPW----KIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTS-WSCHAQ 85 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEE----EEEEEEEC------CBEEEEEEEESTTC-CCSS-CEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccE----EEEEEECCCCCCCCCCEEEEEEEeCCCC-CCCC-CEEEEE
Confidence 45689999999999995 689999999999999 9999999972 468999999996543 3555 999999
Q ss_pred EEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCCC
Q 047807 85 YRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDT 155 (169)
Q Consensus 85 f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~~ 155 (169)
|+|+|+||+++.....+ ...+.|.....+|||++||++++|+++++|||+||+|+|+|+|+|.+++|.
T Consensus 86 ~~l~l~~~~~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 86 AVLKIINYRDDEKSFSR---RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp EEEEECCSSCGGGCEEE---EEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEEEEEcCCCCcceEEe---ccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 99999999987633332 257889876789999999999999988899999999999999999888763
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.97 E-value=3.3e-31 Score=196.90 Aligned_cols=141 Identities=19% Similarity=0.294 Sum_probs=112.5
Q ss_pred cCCCCeEEEEEcCccccccc---C-CCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCC-CCCC
Q 047807 7 SLPPADYIFKIKSFNLLADS---T-VDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNS-YPNA 77 (169)
Q Consensus 7 ~~~~~~~~w~I~nfs~l~~~---~-~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~-~~~~ 77 (169)
....++|+|+|+|||.+++. + +..++||.|.+| ||+| +|.+||+|+ +..+|||+||+|.+.+. ...+
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~ 95 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRL----CARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQ 95 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEE----EEEEEECCCCCCCCCEEEEEEEEecCCCCcccC
Confidence 35689999999999998762 2 248999999999 9999 999999998 34589999999976543 1224
Q ss_pred CeEEEEEEEEEEEeCCCCceeeEee--cCCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807 78 AWSVNVCYRLFVYDQIRKDYLAVQD--AKSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151 (169)
Q Consensus 78 ~w~~~~~f~l~l~nq~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~ 151 (169)
|++.++|+|+|+||+++....... .....+.|+. .+.+|||.+||++++|++++++||+||+|+|+|+|+|.+
T Consensus 96 -W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 96 -WPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp -SSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred -CceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 999999999999999875433221 0113467763 357899999999999997779999999999999997765
Q ss_pred C
Q 047807 152 P 152 (169)
Q Consensus 152 ~ 152 (169)
.
T Consensus 175 ~ 175 (178)
T 4gjh_A 175 L 175 (178)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.96 E-value=1.1e-30 Score=197.15 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=111.1
Q ss_pred CCCCeEEEEEcCcccccc---cC-CCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCC
Q 047807 8 LPPADYIFKIKSFNLLAD---ST-VDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAA 78 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~---~~-~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~ 78 (169)
...++|+|+|+|||.+++ .+ ++.++||+|.+| ||+| +|.+||+|+ +..+|||+||.+.+++.. ..+
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W----~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~- 111 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP- 111 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEE----EEEEEeCCCCCCCCCeEEEEEEecCCccCCCCC-
Confidence 467999999999999876 23 478999999999 9999 999999998 346899999999875431 123
Q ss_pred eEEEEEEEEEEEeCCCCceeeEeecC--Cc----eeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecC
Q 047807 79 WSVNVCYRLFVYDQIRKDYLAVQDAK--SG----VRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP 152 (169)
Q Consensus 79 w~~~~~f~l~l~nq~~~~~~~~~~~~--~~----~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~ 152 (169)
|++.++|+|+|+||.++......... .. .+.|...+.+|||++||++++|+ ++|||+||+|+|+|+|+|+..
T Consensus 112 wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 112 WPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp SSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTC
T ss_pred ceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccC
Confidence 99999999999999976543322100 01 12233446789999999999999 589999999999999999887
Q ss_pred CCC
Q 047807 153 TDT 155 (169)
Q Consensus 153 ~~~ 155 (169)
++.
T Consensus 190 ~~~ 192 (198)
T 4ghu_A 190 PDP 192 (198)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 5
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.96 E-value=1.4e-29 Score=184.88 Aligned_cols=138 Identities=19% Similarity=0.263 Sum_probs=104.6
Q ss_pred CCCCeEEEEEcCcccccc-cC-CC--cEEeCcEEEc--CeEeeeceEEEEeeCCCC---CCCeEEEEEEeccCCCC-CCC
Q 047807 8 LPPADYIFKIKSFNLLAD-ST-VD--GFESGVFESG--GYYWCVCTRLVFYPKGKG---SSDHLSLYLKIDESNSY-PNA 77 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~-~~-~~--~~~S~~f~~g--G~~W~~~~~l~~yP~g~~---~~~~lSvyL~~~~~~~~-~~~ 77 (169)
...++|+|+|+|||.+++ .+ ++ .++||+|.+| ||+| +|++||+|++ ..+|||+||.+.+++.. ..+
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w----~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~ 77 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKL----CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLP 77 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEE----EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeE----EEEEEecCCCCCCCCCEEEEEEEEeecCCCccCC
Confidence 356899999999999875 22 34 8999999999 9999 9999999973 26899999999865442 233
Q ss_pred CeEEEEEEEEEEEeCCCCcee--eEee--cCCceeeecC-----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807 78 AWSVNVCYRLFVYDQIRKDYL--AVQD--AKSGVRTFDQ-----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY 148 (169)
Q Consensus 78 ~w~~~~~f~l~l~nq~~~~~~--~~~~--~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~ 148 (169)
|++.++|+|+|+||.++... .... .......|.. ...+|||++||++++|+ +++||+||+|+|+|+|.
T Consensus 78 -wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~ 154 (160)
T 1lb6_A 78 -WPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS 154 (160)
T ss_dssp -SSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred -CceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEE
Confidence 99999999999999876311 1100 0011223542 13479999999999999 68999999999999999
Q ss_pred EecC
Q 047807 149 VIKP 152 (169)
Q Consensus 149 v~~~ 152 (169)
|+.+
T Consensus 155 v~~~ 158 (160)
T 1lb6_A 155 TRFD 158 (160)
T ss_dssp C---
T ss_pred Eeec
Confidence 9765
No 6
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.96 E-value=2.2e-29 Score=201.25 Aligned_cols=148 Identities=22% Similarity=0.338 Sum_probs=116.0
Q ss_pred CCCCeEEEEEcCcccccccCCCcEEeCcEEEcCe---EeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeEEE
Q 047807 8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGY---YWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWSVN 82 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~---~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~~~ 82 (169)
...++|+|+|+|||.++...++.++||.|.+||| +| +|.+||+|+ +..+|+|+||.|.+... |++.
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W----~i~~yP~G~~~~~~~~lslyL~~~~~~~-----~~v~ 74 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW----CLRVNPKGLDEESKDYLSLYLLLVSCPK-----SEVR 74 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEE----EEEEETTCCC--CTTEEEEEEEEEECCC------CEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceE----EEEEECCCCCccCCCcEEEEEEEcCCCC-----CcEE
Confidence 4568999999999999743358999999999985 99 999999998 35689999999986542 9999
Q ss_pred EEEEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCCCcee---E
Q 047807 83 VCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGT---L 159 (169)
Q Consensus 83 ~~f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~~~~~---~ 159 (169)
|+|+|+|+||+++....... ...+.|.+ +.+|||++||++++|+++++|||+||+|+|+|+|+|++....... .
T Consensus 75 a~~~~~l~~~~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~ 151 (312)
T 3hqi_A 75 AKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM 151 (312)
T ss_dssp EEEEEEEECTTSCEEEEEEC--SSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred EEEEEEEEeCCCCccccccc--CCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence 99999999999876554331 35678885 569999999999999877789999999999999999975432221 1
Q ss_pred EeeecCCc
Q 047807 160 SKEDSLAI 167 (169)
Q Consensus 160 ~~~~~~~~ 167 (169)
..+.+|++
T Consensus 152 ~~~~~p~~ 159 (312)
T 3hqi_A 152 NMVKVPEC 159 (312)
T ss_dssp SSCCCCCC
T ss_pred cccCCCCc
Confidence 23556654
No 7
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.96 E-value=2e-29 Score=189.36 Aligned_cols=138 Identities=19% Similarity=0.271 Sum_probs=108.5
Q ss_pred CCCCeEEEEEcCccccccc-C-CC--cEEeCcEEE--cCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCC-CCC
Q 047807 8 LPPADYIFKIKSFNLLADS-T-VD--GFESGVFES--GGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYP-NAA 78 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~~-~-~~--~~~S~~f~~--gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~-~~~ 78 (169)
...++|+|+|+|||.+++. + ++ .++||.|.+ |||+| +|.+||+|+ +..+|||+||++.+....+ .+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~- 114 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM----CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR- 114 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEE----EEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCC-
Confidence 4689999999999998752 2 33 699999999 99999 999999997 3458999999998765432 34
Q ss_pred eEEEEEEEEEEEeCCCCceeeEee-cCCceeeec----CCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807 79 WSVNVCYRLFVYDQIRKDYLAVQD-AKSGVRTFD----QQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151 (169)
Q Consensus 79 w~~~~~f~l~l~nq~~~~~~~~~~-~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~ 151 (169)
|++.++|+|+|+||+++......- .......|. ..+.+|||++||++++|++ ++|||+||+|+|+|+|+|.+
T Consensus 115 W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 115 WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp SSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred CceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999999999874322110 001123464 2356899999999999986 58999999999999998854
No 8
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.96 E-value=1.9e-29 Score=189.50 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=108.2
Q ss_pred CCCeEEEEEcCcccccc-cC-CC--cEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCe
Q 047807 9 PPADYIFKIKSFNLLAD-ST-VD--GFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAW 79 (169)
Q Consensus 9 ~~~~~~w~I~nfs~l~~-~~-~~--~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w 79 (169)
..++|+|+|+|||.+++ .+ ++ .++||+|.+| ||+| +|++||+|+ +..+|+|+||++.+++.. ..+ |
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw----~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~-w 112 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP-W 112 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-S
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEE----EEEEEeCCCCCCCCCEEEEEEEEecCCCCccCC-C
Confidence 68999999999999874 22 34 5999999999 9999 999999998 346899999999865542 224 9
Q ss_pred EEEEEEEEEEEeCCCCceeeEeec--CCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807 80 SVNVCYRLFVYDQIRKDYLAVQDA--KSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151 (169)
Q Consensus 80 ~~~~~f~l~l~nq~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~ 151 (169)
++.++|+|+|+||.++........ ....+.|.. .+.+|||++||++++|+ ++|||+||+|+|+|+|.|.+
T Consensus 113 p~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 113 PFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp SCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred cEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 999999999999998754332110 012356753 24789999999999999 47999999999999997754
No 9
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.96 E-value=2.6e-29 Score=184.71 Aligned_cols=138 Identities=19% Similarity=0.275 Sum_probs=107.0
Q ss_pred CCCCeEEEEEcCccccccc-C-CC--cEEeCcEE--EcCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCC-CCC
Q 047807 8 LPPADYIFKIKSFNLLADS-T-VD--GFESGVFE--SGGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYP-NAA 78 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~~-~-~~--~~~S~~f~--~gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~-~~~ 78 (169)
...++|+|+|+|||.+++. + ++ .++||+|. +|||+| +|++||+|+ +..+|||+||++.+....+ .+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~- 90 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM----CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR- 90 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEE----EEEEEeCCCCCCCCcEEEEEEEEecCCCCccCC-
Confidence 3689999999999998763 2 33 49999996 789999 999999997 3458999999998765432 34
Q ss_pred eEEEEEEEEEEEeCCCCceeeEee-cCCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807 79 WSVNVCYRLFVYDQIRKDYLAVQD-AKSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151 (169)
Q Consensus 79 w~~~~~f~l~l~nq~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~ 151 (169)
|++.++|+|+|+||+++.+....- .....+.|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 91 w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 91 WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp SSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred CceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 999999999999999865332110 0001235653 3578999999999999942 3999999999999998753
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.95 E-value=1.1e-28 Score=189.86 Aligned_cols=138 Identities=19% Similarity=0.223 Sum_probs=109.6
Q ss_pred CCCeEEEEEcCcccccc-cC-C--CcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCe
Q 047807 9 PPADYIFKIKSFNLLAD-ST-V--DGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAW 79 (169)
Q Consensus 9 ~~~~~~w~I~nfs~l~~-~~-~--~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w 79 (169)
..++|+|+|+|||.+++ .+ + ..++||+|.+| ||+| +|.+||+|+ +..+|+|+||++.+++.. ..+ |
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w----~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~-W 148 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP-W 148 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEE----CEEEETTCCGGGTTTEEEEEECCBCCTTTTSSC-S
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEE----EEEEEcCCCCCCCCCEEEEEEEEecCCccccCC-C
Confidence 68999999999999875 22 2 38999999999 9999 999999998 346899999999865542 224 9
Q ss_pred EEEEEEEEEEEeCCCCceeeEeec--CCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCC
Q 047807 80 SVNVCYRLFVYDQIRKDYLAVQDA--KSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPT 153 (169)
Q Consensus 80 ~~~~~f~l~l~nq~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~ 153 (169)
++.++|+|+|+||.++........ ....+.|.. .+.+|||++||++++|+ ++|||+||+|+|+|+|.|.+.+
T Consensus 149 p~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 149 PFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp SCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTTSC
T ss_pred cEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccccc
Confidence 999999999999998764332110 012335652 35689999999999999 5899999999999999887644
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=201.64 Aligned_cols=134 Identities=16% Similarity=0.305 Sum_probs=112.2
Q ss_pred CCCCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCC--C-CCCeEEEEEEeccCCCCCCCCeEEEEE
Q 047807 8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK--G-SSDHLSLYLKIDESNSYPNAAWSVNVC 84 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~--~-~~~~lSvyL~~~~~~~~~~~~w~~~~~ 84 (169)
.+.++|+|+|+|||.++ +.++|++|.+||++| +|.+||+|+ + ..+|||+||.|.+.. .+.+ |.+.|+
T Consensus 28 ~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W----~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~-w~v~a~ 97 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPW----KIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTS-WSCHAQ 97 (522)
T ss_dssp CSEEEEEEEESSCTTCC----SCEECCCEEETTEEE----EEEECBC--------CBBCEEEEESTTC-CCSS-CBEEEE
T ss_pred cCCcEEEEEECChhhcC----CceeCCCEEECCEee----EEEEEeCCCCCCCCCCeEEEEEEecCCC-CCCC-ceEEEE
Confidence 46789999999999997 379999999999999 999999996 2 568999999998763 4556 999999
Q ss_pred EEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCC
Q 047807 85 YRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTD 154 (169)
Q Consensus 85 f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~ 154 (169)
|+|+|+||.++.....+ ...++|.....+|||.+||++++|.++++|||+||+++|+|+|+|..+++
T Consensus 98 f~l~l~n~~~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 98 AVLKIINYRDDEKSFSR---RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp EEEEECCTTCGGGCEEE---ECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred EEEEEEcCCCCccceec---cceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 99999999987654433 25788987678999999999999987789999999999999999976554
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.69 E-value=5.4e-17 Score=138.99 Aligned_cols=145 Identities=14% Similarity=0.183 Sum_probs=109.4
Q ss_pred CCcCCCCeEEEEEcCcccccccCCCcEEeCcEEE-cCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCCCCCCCeEE-E
Q 047807 5 KRSLPPADYIFKIKSFNLLADSTVDGFESGVFES-GGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSV-N 82 (169)
Q Consensus 5 ~~~~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~-gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~~~~~~w~~-~ 82 (169)
+++..+..+.|+|.||+++...++..++||.|.. .||++ +|.+||++ ..|+|+|+++.+++....-+|++ .
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~----~v~l~~~~---~~~~~~~~~l~sG~~D~~L~WP~~~ 472 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAF----QIYLNLAH---VTNAGIYFHLISGANDDQLQWPCPW 472 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEE----EEEEECCS---SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEE----EEEEecCC---CceEEEEEEEecCCCCCCccCCCCC
Confidence 5677899999999999998765557899999985 69999 99999976 57999999999876511111999 5
Q ss_pred EEEEEEEEeCCCCceee---Ee--ec------CC------------ceeeecC-----CCCCcCccccccchhhccCCCC
Q 047807 83 VCYRLFVYDQIRKDYLA---VQ--DA------KS------------GVRTFDQ-----QTSELGFDKFLTLAELNQHLKG 134 (169)
Q Consensus 83 ~~f~l~l~nq~~~~~~~---~~--~~------~~------------~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~ 134 (169)
-+++|+|+||+...... .. +. .. ....|.+ ++.+|||+.||+++.|+ ++.
T Consensus 473 ~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~ 550 (592)
T 4gwm_A 473 QQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRD 550 (592)
T ss_dssp EEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STT
T ss_pred CEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcC
Confidence 78999999997553211 10 00 00 0112222 24578999999999999 688
Q ss_pred eEeCCEEEEEEEEEEecCCCCcee
Q 047807 135 YLLNNTCTFGAEIYVIKPTDTEGT 158 (169)
Q Consensus 135 fl~~D~l~i~~~V~v~~~~~~~~~ 158 (169)
||+||+|+|.++|+-+......++
T Consensus 551 fiK~d~~~i~~~~eD~~~l~~~~~ 574 (592)
T 4gwm_A 551 FIKGDDVYILLTVEDISHLNSTQI 574 (592)
T ss_dssp SSBTTBEEEEEEEEECGGGSSCCC
T ss_pred cccCCeEEEEEEEEeCccccccCC
Confidence 999999999999988877665443
No 13
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=63.83 E-value=23 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=15.5
Q ss_pred cCccccccchhhccCCCCeEeCCEEEEE
Q 047807 117 LGFDKFLTLAELNQHLKGYLLNNTCTFG 144 (169)
Q Consensus 117 ~G~~~fi~~~~L~~~~~~fl~~D~l~i~ 144 (169)
-||.+|+.-..|+ .+|.|+++
T Consensus 67 ~GW~~Fv~~~~L~-------~GD~lvF~ 87 (104)
T 1yel_A 67 VGWENFVKDNNLE-------DGKYLQFI 87 (104)
T ss_dssp TTHHHHHHHHTCC-------TTCEEEEE
T ss_pred cChHHHHHHcCCC-------CCCEEEEE
Confidence 3899999888887 45556654
No 14
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=52.77 E-value=3.2 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCcccccccCCCcEEeCcEEE
Q 047807 8 LPPADYIFKIKSFNLLADSTVDGFESGVFES 38 (169)
Q Consensus 8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~ 38 (169)
..+|.+.|+|.+|+..+.. +..+.|-.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKpe-Gty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKPE-GTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEETT-SSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcCC-CCceeeEEEEE
Confidence 4678899999999987754 25566666654
No 15
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=30.62 E-value=51 Score=21.97 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=10.6
Q ss_pred cCccccccchhhc
Q 047807 117 LGFDKFLTLAELN 129 (169)
Q Consensus 117 ~G~~~fi~~~~L~ 129 (169)
.||..|+.-..|.
T Consensus 81 ~GW~~FV~~~~L~ 93 (130)
T 1wid_A 81 KGWSRFVKEKNLR 93 (130)
T ss_dssp SSHHHHHHHTTCC
T ss_pred CChHHHHHHcCCC
Confidence 3899999887776
No 16
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=26.61 E-value=95 Score=20.99 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=26.6
Q ss_pred CcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccC
Q 047807 29 DGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDES 71 (169)
Q Consensus 29 ~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~ 71 (169)
+.++ .+.+||+.- .|..||. +||.+|-.+...
T Consensus 24 e~I~--SL~Vd~~t~----hite~p~-----~~LlmFs~L~~~ 55 (130)
T 1jya_A 24 EPVI--GVKVGEFAC----HITEHPV-----GQILMFTLPSLD 55 (130)
T ss_dssp CSEE--EEEETTEEE----EEEECST-----TEEEEEECCCCC
T ss_pred CceE--EEEECCeEE----EEEecCC-----CeEEEEeccCcc
Confidence 5676 478999999 9999997 699999887654
Done!