BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047808
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
           From Burkholderia Thailandensis E264
          Length = 309

 Score = 29.3 bits (64), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 66  EIADIGPDCCRAIDIITRNCWSAMLTSLGFTAEEGNILRGYCD 108
           ++ D   + C+  D++T + W    TS+GF AE     R + D
Sbjct: 205 QVFDDPNEACKGADLVTTDVW----TSMGFEAENEARKRAFAD 243


>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
           Colwellia Psychrerythraea
 pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
           Colwellia Psychrerythraea
 pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
           Colwellia Psychrerythraea
          Length = 609

 Score = 28.1 bits (61), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 59  ELKSCSNEIADIGPDCCRAIDIITRNCWSAMLTSLGFTAEEGNILRGYCDAFSAPSP 115
           EL S SN IA I  D     DI T+N    M     + A E N   GY D +   SP
Sbjct: 82  ELLSISNTIAGIKLD---DADITTKNNQQVMAGLTRYFAGEPNFNIGYIDTWMGLSP 135


>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
 pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
          Length = 492

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 23 ATSMNDCLNNNIKPGYDLATRLEASGGLTKCWNA 56
          ++  N+C  NN+    +   R+E+ GGL + WN+
Sbjct: 2  SSKFNECQLNNLN-ALEPDHRVESEGGLIETWNS 34


>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
          Length = 493

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 23 ATSMNDCLNNNIKPGYDLATRLEASGGLTKCWNA 56
          ++  N+C  NN+    +   R+E+ GGL + WN+
Sbjct: 3  SSKFNECQLNNLN-ALEPDHRVESEGGLIETWNS 35


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,175
Number of Sequences: 62578
Number of extensions: 131906
Number of successful extensions: 292
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)