Query 047808
Match_columns 131
No_of_seqs 90 out of 92
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.9 3.9E-26 8.4E-31 171.1 7.4 69 43-116 38-115 (118)
2 PF05617 Prolamin_like: Prolam 99.7 1.8E-17 3.8E-22 110.0 2.1 57 52-108 1-70 (70)
3 PF07172 GRP: Glycine rich pro 95.7 0.009 2E-07 43.2 2.5 28 1-29 1-28 (95)
4 PF03058 Sar8_2: Sar8.2 family 67.9 4.6 9.9E-05 29.8 2.2 31 1-32 1-32 (93)
5 smart00499 AAI Plant lipid tra 32.0 36 0.00079 21.0 1.8 36 53-88 1-43 (79)
6 PLN00214 putative protein; Pro 26.5 38 0.00083 25.9 1.3 31 61-91 45-85 (115)
7 cd04660 nsLTP_like nsLTP_like: 22.2 43 0.00092 22.2 0.8 31 57-87 5-41 (73)
8 PF09585 Lin0512_fam: Conserve 18.4 56 0.0012 24.7 0.8 29 69-97 17-46 (113)
9 PF15240 Pro-rich: Proline-ric 17.0 1.2E+02 0.0026 24.6 2.5 12 8-19 2-13 (179)
10 cd01959 nsLTP2 nsLTP2: Non-spe 15.5 99 0.0022 20.7 1.4 34 58-92 4-40 (66)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.93 E-value=3.9e-26 Score=171.14 Aligned_cols=69 Identities=26% Similarity=0.663 Sum_probs=60.3
Q ss_pred hhhhcCCchhhhhhhhccchhHHhh---------hccChhhhHHHHhhhcccccccccCCCCCcchhhhhhhcccccCCC
Q 047808 43 RLEASGGLTKCWNALMELKSCSNEI---------ADIGPDCCRAIDIITRNCWSAMLTSLGFTAEEGNILRGYCDAFSAP 113 (131)
Q Consensus 43 rl~~~~~~~kCWsSL~~i~gC~~EI---------~~IGp~CCkAI~~I~~~CWP~Mfps~pFtpee~~~LKg~C~~~~~~ 113 (131)
++.+..|+.||||||++++||+.|| ++||++|||||++.+ ||||+| |.+||+| ++||++|++++..
T Consensus 38 ~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fP---p~LK~~Cs~i~~~ 112 (118)
T PLN00213 38 LIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFP---PMLKEQCSRVAGA 112 (118)
T ss_pred CCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccc---hHHHHHHhcccCC
Confidence 3444458999999999999999999 899999999999977 999995 9999999 6999999998555
Q ss_pred CCC
Q 047808 114 SPG 116 (131)
Q Consensus 114 ~p~ 116 (131)
+|.
T Consensus 113 ~~~ 115 (118)
T PLN00213 113 TPP 115 (118)
T ss_pred CCC
Confidence 543
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.67 E-value=1.8e-17 Score=109.99 Aligned_cols=57 Identities=32% Similarity=0.751 Sum_probs=49.0
Q ss_pred hhhhhhhccchhHHhh---------hccChhhhHHHHhhhcccccccccCCCCCcchhh----hhhhccc
Q 047808 52 KCWNALMELKSCSNEI---------ADIGPDCCRAIDIITRNCWSAMLTSLGFTAEEGN----ILRGYCD 108 (131)
Q Consensus 52 kCWsSL~~i~gC~~EI---------~~IGp~CCkAI~~I~~~CWP~Mfps~pFtpee~~----~LKg~C~ 108 (131)
|||+++.++++|..|| .+||++||++|+.++++|||+|+...+++|++.+ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 6999999999999999 4899999999999999999995554455555556 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.67 E-value=0.009 Score=43.22 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhccccc
Q 047808 1 MALNHVFFILALTCLIMANIANATSMNDC 29 (131)
Q Consensus 1 MA~~~~fl~~~l~~~~~a~~~~~~~~r~~ 29 (131)
|||+ .|||++|.|.++.+|||.|+.|++
T Consensus 1 MaSK-~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASK-AFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred Cchh-HHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9954 466666655555667899999988
No 4
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=67.90 E-value=4.6 Score=29.82 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCchh-HHHHHHHHHHHHHhhhhhhcccccccC
Q 047808 1 MALNH-VFFILALTCLIMANIANATSMNDCLNN 32 (131)
Q Consensus 1 MA~~~-~fl~~~l~~~~~a~~~~~~~~r~~~~~ 32 (131)
|++++ .||-+.|++++|. |||-+.+|+...+
T Consensus 1 M~~Ktnlfl~lSLailLmI-ISSqv~AREms~A 32 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMI-ISSQVDAREMSKA 32 (93)
T ss_pred CcchhhhHHHHHHHHHHHH-HhhHHHHHHHhcc
Confidence 88888 7777777445544 5888888887654
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=31.98 E-value=36 Score=21.03 Aligned_cols=36 Identities=19% Similarity=0.588 Sum_probs=24.9
Q ss_pred hhhhhhccchhHHhhh------ccChhhhHHHHhh-hcccccc
Q 047808 53 CWNALMELKSCSNEIA------DIGPDCCRAIDII-TRNCWSA 88 (131)
Q Consensus 53 CWsSL~~i~gC~~EI~------~IGp~CCkAI~~I-~~~CWP~ 88 (131)
|...+.+..+|..-+. .-...||..+..+ ...|+=.
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 4455555667777662 2357799999999 8888653
No 6
>PLN00214 putative protein; Provisional
Probab=26.54 E-value=38 Score=25.87 Aligned_cols=31 Identities=16% Similarity=0.458 Sum_probs=25.3
Q ss_pred chhHHhh-------hccChhhhHHHHhhhccc---cccccc
Q 047808 61 KSCSNEI-------ADIGPDCCRAIDIITRNC---WSAMLT 91 (131)
Q Consensus 61 ~gC~~EI-------~~IGp~CCkAI~~I~~~C---WP~Mfp 91 (131)
+-|..|| +.....||+-+...+.+| |=+++.
T Consensus 45 ~KCa~EI~a~i~~N~t~s~~CC~~LVk~GK~CH~~LiK~i~ 85 (115)
T PLN00214 45 PKCALDIIAVVFENGTLIDPCCNDLVKEGKVCHDTLIKYIA 85 (115)
T ss_pred HhhHHHHHHHHHcCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 6799999 455889999999999999 445554
No 7
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=22.24 E-value=43 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=20.7
Q ss_pred hhccchhHHhh--hc----cChhhhHHHHhhhccccc
Q 047808 57 LMELKSCSNEI--AD----IGPDCCRAIDIITRNCWS 87 (131)
Q Consensus 57 L~~i~gC~~EI--~~----IGp~CCkAI~~I~~~CWP 87 (131)
+..+..|..-+ +. -.++||.+++.++..|-=
T Consensus 5 ~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 5 LDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLC 41 (73)
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEe
Confidence 34555676666 22 355799999998877753
No 8
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=18.44 E-value=56 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=23.1
Q ss_pred ccChhhhHHHH-hhhcccccccccCCCCCc
Q 047808 69 DIGPDCCRAID-IITRNCWSAMLTSLGFTA 97 (131)
Q Consensus 69 ~IGp~CCkAI~-~I~~~CWP~Mfps~pFtp 97 (131)
+.-+++++|++ .|.+||.|.|+...|+..
T Consensus 17 D~TkAA~RAv~DAI~~nslp~l~~~~~~~~ 46 (113)
T PF09585_consen 17 DYTKAAVRAVRDAISHNSLPGLFEILGLDL 46 (113)
T ss_pred cHHHHHHHHHHHHHhhcchHHHHHHcCCCh
Confidence 34568888885 578999999999988854
No 9
>PF15240 Pro-rich: Proline-rich
Probab=16.97 E-value=1.2e+02 Score=24.62 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHh
Q 047808 8 FILALTCLIMAN 19 (131)
Q Consensus 8 l~~~l~~~~~a~ 19 (131)
|+++||..|+|+
T Consensus 2 LlVLLSvALLAL 13 (179)
T PF15240_consen 2 LLVLLSVALLAL 13 (179)
T ss_pred hhHHHHHHHHHh
Confidence 566666777776
No 10
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=15.50 E-value=99 Score=20.70 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=24.5
Q ss_pred hccchhHHhh---hccChhhhHHHHhhhcccccccccC
Q 047808 58 MELKSCSNEI---ADIGPDCCRAIDIITRNCWSAMLTS 92 (131)
Q Consensus 58 ~~i~gC~~EI---~~IGp~CCkAI~~I~~~CWP~Mfps 92 (131)
+++..|...| +.-..+||.++++.+ .|.=..+.+
T Consensus 4 ~~L~~C~~ai~~~~~Ps~~CC~~Lk~~~-~CLC~y~~~ 40 (66)
T cd01959 4 TQLSPCLPAILGGSPPSAACCAKLKEQQ-SCLCQYAKN 40 (66)
T ss_pred hhcccCHHHHhCCCCCCHHHHHHHhcCC-CCeeeeecC
Confidence 4566777777 345789999999965 887666543
Done!