Query 047808
Match_columns 131
No_of_seqs 90 out of 92
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 12.2 52 0.0018 22.2 0.3 11 68-78 46-56 (74)
2 3c8l_A FTSZ-like protein of un 10.8 74 0.0025 23.3 0.7 28 69-96 21-49 (122)
3 2alg_A Non-specific lipid tran 10.2 1.5E+02 0.005 19.7 2.0 59 53-111 4-78 (92)
4 1l6h_A LTP2, non-specific lipi 10.2 99 0.0034 19.5 1.1 26 60-86 8-36 (69)
5 1bwo_A NS-LTP1, nonspecific li 9.7 1.6E+02 0.0053 19.5 2.0 58 53-110 3-76 (90)
6 1ebo_A Ebola virus envelope pr 9.5 73 0.0025 23.5 0.3 9 68-76 83-91 (131)
7 2knp_A Mcocc-1; disulfide-rich 9.4 54 0.0018 19.0 -0.4 10 84-93 18-27 (33)
8 1n89_A Lipid transfer protein; 9.3 1.4E+02 0.0046 18.7 1.5 28 60-88 7-37 (67)
9 3l32_A Phosphoprotein; antipar 8.8 1.3E+02 0.0044 18.7 1.1 20 39-58 15-34 (45)
10 2rkn_A DIR1 protein, AT5G48485 8.7 66 0.0023 20.5 -0.2 34 53-86 5-43 (77)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=12.19 E-value=52 Score=22.19 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=8.2
Q ss_pred hccChhhhHHH
Q 047808 68 ADIGPDCCRAI 78 (131)
Q Consensus 68 ~~IGp~CCkAI 78 (131)
.-+||+||-.+
T Consensus 46 ~ilgpdc~i~~ 56 (74)
T 2ebo_A 46 HILGPDCAIEP 56 (74)
T ss_dssp HHHGGGGGCCC
T ss_pred eecCCccccCH
Confidence 46899999543
No 2
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=10.84 E-value=74 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=21.7
Q ss_pred ccChhhhHHHH-hhhcccccccccCCCCC
Q 047808 69 DIGPDCCRAID-IITRNCWSAMLTSLGFT 96 (131)
Q Consensus 69 ~IGp~CCkAI~-~I~~~CWP~Mfps~pFt 96 (131)
+.-.++.+|++ .|.+||.|.|+...|+.
T Consensus 21 D~TkAA~RAvrDAI~~nslp~~~~~~g~~ 49 (122)
T 3c8l_A 21 EPTIAASRAVRNAIAHNALPGVWEVAGLS 49 (122)
T ss_dssp CHHHHHHHHHHHHHTTCCCSSHHHHHTCS
T ss_pred cHHHHHHHHHHHHHhhhcchhHHHHCCCC
Confidence 34467778876 47889999999988884
No 3
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=10.21 E-value=1.5e+02 Score=19.65 Aligned_cols=59 Identities=24% Similarity=0.557 Sum_probs=37.1
Q ss_pred hhhhhhccchhHHhh---hccChhhhHHHHhhh-------c-----ccccccccCC-CCCcchhhhhhhcccccC
Q 047808 53 CWNALMELKSCSNEI---ADIGPDCCRAIDIIT-------R-----NCWSAMLTSL-GFTAEEGNILRGYCDAFS 111 (131)
Q Consensus 53 CWsSL~~i~gC~~EI---~~IGp~CCkAI~~I~-------~-----~CWP~Mfps~-pFtpee~~~LKg~C~~~~ 111 (131)
|=..+.++..|..-+ +.-.++||.+++.+. | .|-=...+.. ++.+.-+.-|-+.|.-..
T Consensus 4 C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~ 78 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSI 78 (92)
T ss_dssp HHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCC
T ss_pred hHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCC
Confidence 555666777788777 335678999999975 3 3442222222 555655667778886543
No 4
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=10.19 E-value=99 Score=19.51 Aligned_cols=26 Identities=27% Similarity=0.764 Sum_probs=16.9
Q ss_pred cchhHHhh---hccChhhhHHHHhhhcccc
Q 047808 60 LKSCSNEI---ADIGPDCCRAIDIITRNCW 86 (131)
Q Consensus 60 i~gC~~EI---~~IGp~CCkAI~~I~~~CW 86 (131)
+..|..-| +.-.++||.+++.. ..|.
T Consensus 8 L~pC~~~v~~~~~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 8 LTVCTGAIAGGARPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp HHHHHHHHTTCCSTTHHHHHHHHHH-HHHH
T ss_pred cccCHHHHcCCCCCCHHHHHhhCCC-CCCC
Confidence 34455555 34567899999976 5664
No 5
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=9.73 E-value=1.6e+02 Score=19.48 Aligned_cols=58 Identities=12% Similarity=0.417 Sum_probs=36.1
Q ss_pred hhhhhhccchhHHhh---hccChhhhHHHHhhhc------------ccccccccCC-CCCcchhhhhhhccccc
Q 047808 53 CWNALMELKSCSNEI---ADIGPDCCRAIDIITR------------NCWSAMLTSL-GFTAEEGNILRGYCDAF 110 (131)
Q Consensus 53 CWsSL~~i~gC~~EI---~~IGp~CCkAI~~I~~------------~CWP~Mfps~-pFtpee~~~LKg~C~~~ 110 (131)
|=..+.++..|..-+ +.-.++||.+++.+.. .|.=....+. ++.+.-+.-|-+.|.-.
T Consensus 3 C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 555666777788887 2245689999998753 4542222332 45555556677788653
No 6
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=9.52 E-value=73 Score=23.51 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=7.4
Q ss_pred hccChhhhH
Q 047808 68 ADIGPDCCR 76 (131)
Q Consensus 68 ~~IGp~CCk 76 (131)
.-+||+||-
T Consensus 83 ~iLGPdCcI 91 (131)
T 1ebo_A 83 HILGPDCRI 91 (131)
T ss_dssp HHHGGGGGC
T ss_pred eecCCcccc
Confidence 568999994
No 7
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=9.40 E-value=54 Score=19.03 Aligned_cols=10 Identities=20% Similarity=0.986 Sum_probs=7.3
Q ss_pred ccccccccCC
Q 047808 84 NCWSAMLTSL 93 (131)
Q Consensus 84 ~CWP~Mfps~ 93 (131)
+|||..-|..
T Consensus 18 rcwptvtpgv 27 (33)
T 2knp_A 18 RCWPTVTPGV 27 (33)
T ss_dssp CEEECSSTTE
T ss_pred eeccccCCCe
Confidence 7899876643
No 8
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=9.27 E-value=1.4e+02 Score=18.74 Aligned_cols=28 Identities=25% Similarity=0.718 Sum_probs=17.7
Q ss_pred cchhHHhh---hccChhhhHHHHhhhcccccc
Q 047808 60 LKSCSNEI---ADIGPDCCRAIDIITRNCWSA 88 (131)
Q Consensus 60 i~gC~~EI---~~IGp~CCkAI~~I~~~CWP~ 88 (131)
+..|...| +.-.++||.+++.. ..|-=.
T Consensus 7 L~pC~~~v~~~~~Ps~~CC~~lk~~-~~ClC~ 37 (67)
T 1n89_A 7 LAVCASAILSGAKPSGECCGNLRAQ-QGCFCQ 37 (67)
T ss_dssp THHHHHHHTTCCCCCHHHHHHHHHH-SSHHHH
T ss_pred cccCHHHHcCCCCCCHHHHHhhCCC-CCCCCc
Confidence 34455555 34567899999976 566433
No 9
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=8.80 E-value=1.3e+02 Score=18.75 Aligned_cols=20 Identities=10% Similarity=0.434 Sum_probs=16.9
Q ss_pred chhhhhhhcCCchhhhhhhh
Q 047808 39 DLATRLEASGGLTKCWNALM 58 (131)
Q Consensus 39 ~l~~rl~~~~~~~kCWsSL~ 58 (131)
-+..|++.|++..|=||...
T Consensus 15 qiVrkmKtGe~FfKiWS~~~ 34 (45)
T 3l32_A 15 QIVRQMRSGERFLKIWSQTV 34 (45)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHH
Confidence 46778898999999999874
No 10
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=8.66 E-value=66 Score=20.54 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=20.1
Q ss_pred hhhhhhccchhHHhh-----hccChhhhHHHHhhhcccc
Q 047808 53 CWNALMELKSCSNEI-----ADIGPDCCRAIDIITRNCW 86 (131)
Q Consensus 53 CWsSL~~i~gC~~EI-----~~IGp~CCkAI~~I~~~CW 86 (131)
|=..+.++..|..-+ ..-.++||.+++..+..|-
T Consensus 5 C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~~~~Cl 43 (77)
T 2rkn_A 5 CGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACL 43 (77)
T ss_dssp TTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTCCHHHH
T ss_pred HHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhcCcCCc
Confidence 333344444555555 1345679999998666664
Done!